Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 270 of 328
Found at i:80892480 original size:40 final size:40
Alignment explanation
Indices: 80892372--80892581 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80892362 CGGGATTTAA
* * * * *
80892372 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80892412 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80892452 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80892492 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80892532 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80892572 CCGGATATAT
1 CCGGATATAT
80892582 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80900617 original size:40 final size:40
Alignment explanation
Indices: 80900509--80900718 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80900499 CGGGATTTAA
* * * * *
80900509 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80900549 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80900589 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80900629 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80900669 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80900709 CCGGATATAT
1 CCGGATATAT
80900719 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80906191 original size:19 final size:20
Alignment explanation
Indices: 80906174--80906276 Score: 86
Period size: 21 Copynumber: 4.9 Consensus size: 20
80906164 TATATAATAG
80906174 TATTAGAAATATACAATATAA
1 TATTAGAAATATAC-ATATAA
80906195 TATTAGAAATATACATATAA
1 TATTAGAAATATACATATAA
* *
80906215 TAGTATAAAAATATATAACTAATAA
1 TA-T-TAGAAATATA-CA-T-ATAA
*
80906240 TATTA-AAATATATATAATAA
1 TATTAGAAATATACAT-ATAA
80906260 TATATA-AAATATA-ATAT
1 TAT-TAGAAATATACATAT
80906277 TAAAAATTTA
Statistics
Matches: 73, Mismatches: 3, Indels: 14
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.03
20 19 0.26
21 25 0.34
22 16 0.22
23 3 0.04
24 2 0.03
25 6 0.08
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TATTAGAAATATACATATAA
Found at i:80906249 original size:44 final size:42
Alignment explanation
Indices: 80906159--80906272 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 42
80906149 ACACATATAT
*
80906159 ATATATATATAATAGTATTAGAAATATACAATATAATATTAGAA
1 ATATA-ATATAATAGTA-TAAAAATATACAATATAATATTAGAA
*
80906203 ATATACATATAATAGTATAAAAATATATAACTAATAATATTA-AA
1 ATATA-ATATAATAGTATAAAAATATACAA-T-ATAATATTAGAA
*
80906247 ATAT-ATATAATAATATATAAAATATA
1 ATATAATATAATAGTATA-AAAATATA
80906273 ATATTAAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
42 12 0.19
43 19 0.30
44 23 0.37
45 9 0.14
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.36
Consensus pattern (42 bp):
ATATAATATAATAGTATAAAAATATACAATATAATATTAGAA
Found at i:80906254 original size:12 final size:11
Alignment explanation
Indices: 80906182--80906327 Score: 59
Period size: 11 Copynumber: 12.5 Consensus size: 11
80906172 AGTATTAGAA
*
80906182 ATATACAATAT
1 ATATAAAATAT
80906193 AATATTAGAAATAT
1 -ATA-TA-AAATAT
* *
80906207 ACATATAATAGT
1 ATATAAAATA-T
80906219 ATA-AAAATAT
1 ATATAAAATAT
*
80906229 ATA-ACTAATA-
1 ATATA-AAATAT
80906239 ATATTAAAATAT
1 ATA-TAAAATAT
*
80906251 ATATAATA-AT
1 ATATAAAATAT
80906261 ATATAAAATAT
1 ATATAAAATAT
*
80906272 AATATTAAAAATTT
1 -ATA-T-AAAATAT
*
80906286 ATATACATAACAT
1 ATATA-A-AATAT
*
80906299 ATATGAAAA-AC
1 ATAT-AAAATAT
*
80906310 ATATATAATAT
1 ATATAAAATAT
80906321 AATATAA
1 -ATATAA
80906328 TATTAAAACA
Statistics
Matches: 102, Mismatches: 16, Indels: 32
0.68 0.11 0.21
Matches are distributed among these distances:
10 20 0.20
11 30 0.29
12 24 0.24
13 16 0.16
14 12 0.12
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (11 bp):
ATATAAAATAT
Found at i:80906262 original size:34 final size:35
Alignment explanation
Indices: 80906218--80906301 Score: 100
Period size: 34 Copynumber: 2.4 Consensus size: 35
80906208 CATATAATAG
* *
80906218 TATAAAAATATAT-AACTAATAATATT-AAAATATA
1 TATAATAATATATAAAAT-ATAATATTAAAAATATA
*
80906252 TATAATAATATATAAAATATAATATTAAAAATTTA
1 TATAATAATATATAAAATATAATATTAAAAATATA
*
80906287 TATACATAACATATA
1 TATA-ATAATATATA
80906302 TGAAAAACAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
34 20 0.47
35 14 0.33
36 9 0.21
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (35 bp):
TATAATAATATATAAAATATAATATTAAAAATATA
Found at i:80906314 original size:59 final size:52
Alignment explanation
Indices: 80906202--80906341 Score: 129
Period size: 59 Copynumber: 2.5 Consensus size: 52
80906192 TAATATTAGA
* * * *
80906202 AATATACATATAATAGTATAAAAATATATAACTAATAATATTAAAATATATATAAT
1 AATATA-ATATAATA-T-TAAAAATTTATAACTAACAATATGAAAATACATAT-AT
80906258 AATATATAAAATATAATATTAAAAATTTATATACATAACATATATGAAAA-ACATATAT
1 -A-ATAT--AATATAATATTAAAAATTTATA-AC-TAACA-ATATGAAAATACATATAT
80906316 AATATAATATAATATTAAAACATTTA
1 AATATAATATAATATTAAAA-ATTTA
80906342 CATAATATAT
Statistics
Matches: 72, Mismatches: 4, Indels: 16
0.78 0.04 0.17
Matches are distributed among these distances:
54 15 0.21
55 5 0.07
56 4 0.06
57 13 0.18
58 9 0.12
59 17 0.24
60 9 0.12
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (52 bp):
AATATAATATAATATTAAAAATTTATAACTAACAATATGAAAATACATATAT
Found at i:80906505 original size:3 final size:3
Alignment explanation
Indices: 80906485--80906633 Score: 175
Period size: 3 Copynumber: 49.7 Consensus size: 3
80906475 CAACATATAC
80906485 ATA ATA TATA ATA A-A ATA ATA AT- ATA CATA AT- ATA TATA A-A ATA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA
* * *
80906529 CATA TATA ACA A-A ACA TATA CT- ATA ATA ATA ATA ATA ATA ATA ATA
1 -ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
80906575 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
80906623 ATA ATA ATA AT
1 ATA ATA ATA AT
80906634 GTAAAAAAAC
Statistics
Matches: 130, Mismatches: 5, Indels: 22
0.83 0.03 0.14
Matches are distributed among these distances:
2 11 0.08
3 102 0.78
4 17 0.13
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:80906508 original size:18 final size:18
Alignment explanation
Indices: 80906485--80906659 Score: 125
Period size: 18 Copynumber: 9.8 Consensus size: 18
80906475 CAACATATAC
80906485 ATAATATATAATAAAATA
1 ATAATATATAATAAAATA
*
80906503 ATAATATACATAATATATATA
1 ATAATAT--ATAATA-AAATA
* * *
80906524 A-AATACAT-ATATAACA
1 ATAATATATAATAAAATA
* * *
80906540 A-AACATATACTATAATA
1 ATAATATATAATAAAATA
80906557 ATAATA-ATAATAATAATA
1 ATAATATATAATAA-AATA
80906575 ATAATA-ATAATAATAATA
1 ATAATATATAATAA-AATA
80906593 ATAATA-ATAATAATAATA
1 ATAATATATAATAA-AATA
80906611 ATAATA-ATAATAATAATA
1 ATAATATATAATAA-AATA
* *
80906629 ATAATGTA-AA-AAAACA
1 ATAATATATAATAAAATA
* *
80906645 AGAATATTTAATAAA
1 ATAATATATAATAAA
80906660 GAAATGAAAA
Statistics
Matches: 131, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
16 16 0.12
17 19 0.15
18 80 0.61
19 1 0.01
20 10 0.08
21 5 0.04
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (18 bp):
ATAATATATAATAAAATA
Found at i:80907712 original size:13 final size:13
Alignment explanation
Indices: 80907670--80907712 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
80907660 AGGGTATTGG
80907670 GTTGTTGGGTTTGA
1 GTTGTTGGGTTT-A
* * *
80907684 GTAGTTGGGCTAA
1 GTTGTTGGGTTTA
80907697 GTTGTTGGGTTTA
1 GTTGTTGGGTTTA
80907710 GTT
1 GTT
80907713 TAGGCATTAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.12, C:0.02, G:0.40, T:0.47
Consensus pattern (13 bp):
GTTGTTGGGTTTA
Found at i:80908544 original size:14 final size:14
Alignment explanation
Indices: 80908514--80908549 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
80908504 GAGTTGATTT
80908514 TTGAAACAACAGAAA
1 TTGAAA-AACAGAAA
*
80908529 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
80908543 TTGAAAA
1 TTGAAAA
80908550 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.58, C:0.08, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:80908594 original size:88 final size:84
Alignment explanation
Indices: 80908451--80908767 Score: 379
Period size: 88 Copynumber: 3.7 Consensus size: 84
80908441 TTGAAAAACA
* * *
80908451 GAAATTAAAAATACCTCAGCGTGCCCCGAGGCTGAACTCACCTCTCGCAACATGAGTTGATTTTT
1 GAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
80908516 GAAACAACAGAAATTGAAAAACG
66 GAAA-AA-ATAAATT-AAAAA-G
* * *
80908539 GAAATTGAAAATACCTCAGCGTG-CCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTT
1 GAAATTAAAAATACCTCAGCGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
80908603 TGAAAAGTATAAATTAAACAG
65 TGAAAA-AATAAATTAAAAAG
* * * *
80908624 G-AATTAAAAATTCCTCAGCATGTGAGCCGAGGCTTAACTCATCTCTCGCAATATGAGTTGATTT
1 GAAATTAAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
80908688 TT-AAAAAATTAAATTAAACAG
64 TTGAAAAAA-TAAATTAAAAAG
* * *
80908709 GAATTTAAAAATACATCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 GAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
80908768 GTTTAAAAAT
Statistics
Matches: 199, Mismatches: 23, Indels: 18
0.83 0.10 0.08
Matches are distributed among these distances:
84 52 0.26
85 19 0.10
86 56 0.28
87 12 0.06
88 60 0.30
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (84 bp):
GAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GAAAAAATAAATTAAAAAG
Found at i:80908676 original size:86 final size:83
Alignment explanation
Indices: 80908446--80908767 Score: 394
Period size: 86 Copynumber: 3.8 Consensus size: 83
80908436 GATTTTTGAA
* * *
80908446 AAACAGAAATTAAAAATACCTCAGCGTGCCCCGAGGCTGAACTCACCTCTCGCAACATGAGTTGA
1 AAACAGGAATTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
80908511 TTTTTGAAACAACAGAAATT
65 TTTTTGAAA-AATATAAATT
* * *
80908531 GAAAAACGGAAATTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AAACA-GG-AATTAAAAATACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAGT
* *
80908596 TGACTTTTGAAAAGTATAAATT
62 TGATTTTTGAAAAATATAAATT
* * * *
80908618 AAACAGGAATTAAAAATTCCTCAGCATGTGAGCCGAGGCTTAACTCATCTCTCGCAATATGAGTT
1 AAACAGGAATTAAAAATACCTCAGC--GTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
80908683 GATTTTTAAAAAAT-TAAATT
63 GATTTTTGAAAAATATAAATT
*
80908703 AAACAGGAATTTAAAAATACATCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACAGGAA-TTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
80908768 GTTTAAAAAT
Statistics
Matches: 203, Mismatches: 26, Indels: 16
0.83 0.11 0.07
Matches are distributed among these distances:
84 51 0.25
85 17 0.08
86 64 0.32
87 13 0.06
88 58 0.29
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (83 bp):
AAACAGGAATTAAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAATATAAATT
Found at i:80921199 original size:29 final size:30
Alignment explanation
Indices: 80921154--80921224 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 30
80921144 ATACTATGTA
*
80921154 CAAAAATATATACATA-AT---ATGGTATT
1 CAAAAATATATACATATATAACATAGTATT
80921180 -AAAAATATATACATATATAACATAGTATT
1 CAAAAATATATACATATATAACATAGTATT
* *
80921209 CAAGAATGTATACATA
1 CAAAAATATATACATA
80921225 AGATGATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 15 0.41
26 2 0.05
29 7 0.19
30 13 0.35
ACGTcount: A:0.52, C:0.08, G:0.07, T:0.32
Consensus pattern (30 bp):
CAAAAATATATACATATATAACATAGTATT
Found at i:80921242 original size:19 final size:19
Alignment explanation
Indices: 80921218--80921276 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
80921208 TCAAGAATGT
80921218 ATACATAAGATGATATAAA
1 ATACATAAGATGATATAAA
* *
80921237 ATACAT-ACATG-TGT---
1 ATACATAAGATGATATAAA
80921251 ATACATAAGATGATATAAA
1 ATACATAAGATGATATAAA
80921270 ATACATA
1 ATACATA
80921277 CATGGAATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
14 6 0.19
15 4 0.13
16 2 0.06
17 2 0.06
18 4 0.13
19 13 0.42
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (19 bp):
ATACATAAGATGATATAAA
Found at i:80921254 original size:33 final size:33
Alignment explanation
Indices: 80921215--80921280 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
80921205 TATTCAAGAA
80921215 TGTATACATAAGATGATATAAAATACATACATG
1 TGTATACATAAGATGATATAAAATACATACATG
80921248 TGTATACATAAGATGATATAAAATACATACATG
1 TGTATACATAAGATGATATAAAATACATACATG
80921281 GAATAGTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.30
Consensus pattern (33 bp):
TGTATACATAAGATGATATAAAATACATACATG
Found at i:80921564 original size:2 final size:2
Alignment explanation
Indices: 80921557--80921597 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
80921547 TAGTATGAAA
* *
80921557 AT AT AT AT AT AT AT AT AC AT AC AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80921598 GTGTTAGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:80921740 original size:3 final size:3
Alignment explanation
Indices: 80921734--80921822 Score: 51
Period size: 3 Copynumber: 30.0 Consensus size: 3
80921724 AATAGTAGCT
* *
80921734 ATA ATA ATA AT- ATA TTA ATA ATGA ATA ATA A-A AGGA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA A-TA ATA ATA ATA
* * * * * *
80921778 ATA GTA ATA ATA ACA ATG ATA ATC ATG AGA ATA AT- ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
80921823 TTTAAAATGA
Statistics
Matches: 65, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
2 8 0.12
3 50 0.77
4 7 0.11
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:80925357 original size:104 final size:104
Alignment explanation
Indices: 80925177--80925375 Score: 389
Period size: 104 Copynumber: 1.9 Consensus size: 104
80925167 ATTACAATAA
80925177 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
1 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
80925242 CATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGT
66 CATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGT
80925281 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
1 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
*
80925346 CATTAGTAAACATATGCAAGCCCATTTGGG
66 CATCAGTAAACATATGCAAGCCCATTTGGG
80925376 GAGACTACTC
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 94 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (104 bp):
ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
CATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGT
Found at i:80925660 original size:25 final size:27
Alignment explanation
Indices: 80925623--80925676 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
80925613 TCAAACATGC
80925623 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
80925649 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
80925675 AT
1 AT
80925677 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:80927247 original size:25 final size:26
Alignment explanation
Indices: 80927153--80927261 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
80927143 CATGATATTC
80927153 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80927179 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
80927205 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
80927231 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
80927256 TTATCA
1 TTATCA
80927262 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80931233 original size:105 final size:105
Alignment explanation
Indices: 80931073--80931272 Score: 400
Period size: 105 Copynumber: 1.9 Consensus size: 105
80931063 ATTACAATAA
80931073 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
1 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
80931138 CATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGGT
66 CATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGGT
80931178 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
1 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
80931243 CATCAGTAAACATATGCAAGCCCATTTGGG
66 CATCAGTAAACATATGCAAGCCCATTTGGG
80931273 GAGACTACTC
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 95 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (105 bp):
ACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAA
CATCAGTAAACATATGCAAGCCCATTTGGGTAACAGTGGT
Found at i:80931557 original size:25 final size:26
Alignment explanation
Indices: 80931520--80931571 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
80931510 TCAAACATGC
80931520 ATTTAGGTCAATTTA-ACCCTAGGGGT
1 ATTTAGGTCAATTTACA-CCTAGGGGT
* *
80931546 ATTTCGGT-AATTTTCACCTAGGGGT
1 ATTTAGGTCAATTTACACCTAGGGGT
80931571 A
1 A
80931572 AAACTGTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (26 bp):
ATTTAGGTCAATTTACACCTAGGGGT
Found at i:80933085 original size:26 final size:26
Alignment explanation
Indices: 80933049--80933158 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
80933039 ACATGAATTC
80933049 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
80933075 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
80933101 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
80933127 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
80933153 TTATCA
1 TTATCA
80933159 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80934269 original size:29 final size:29
Alignment explanation
Indices: 80934235--80934308 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
80934225 TAATCGATCA
**
80934235 CGCACACTTAGTGCCATGTGATTT-AAGCT
1 CGCACACTTAGTGCCAT-ACATTTCAAGCT
80934264 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAGCT
*
80934293 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80934309 ATCTCATCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 4 0.10
29 37 0.90
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCAAGCT
Found at i:80937145 original size:44 final size:44
Alignment explanation
Indices: 80936988--80937166 Score: 150
Period size: 44 Copynumber: 4.0 Consensus size: 44
80936978 AAGCAGATCT
* ** * *
80936988 AAGATGATTTGGCATCTCTGTA-TTGTCATAGAGCAGATCGAAG
1 AAGATGATTTGGCATCTCTGTATTTGACAGGGAGCAAATCCAAG
*
80937031 ATAG-TAGATTTGGCATCT-TCGTATTTTGGC-GAGGAGCAAATCCAAG
1 A-AGAT-GATTTGGCATCTCT-GTA-TTTGACAG-GGAGCAAATCCAAG
* * * * * * *
80937077 ATGACAGATTTGGTATCTCCGTATTCGACGGGGAGCAAAACCAAG
1 AAGA-TGATTTGGCATCTCTGTATTTGACAGGGAGCAAATCCAAG
*
80937122 AAGATGATTTGGCATCTCTGTATTTGACAGGGAGCAAATCGAAG
1 AAGATGATTTGGCATCTCTGTATTTGACAGGGAGCAAATCCAAG
80937166 A
1 A
80937167 CATAGCAGAT
Statistics
Matches: 106, Mismatches: 20, Indels: 19
0.73 0.14 0.13
Matches are distributed among these distances:
43 3 0.03
44 51 0.48
45 21 0.20
46 31 0.29
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (44 bp):
AAGATGATTTGGCATCTCTGTATTTGACAGGGAGCAAATCCAAG
Found at i:80937285 original size:80 final size:79
Alignment explanation
Indices: 80937122--80937325 Score: 214
Period size: 80 Copynumber: 2.6 Consensus size: 79
80937112 CAAAACCAAG
* * * * *
80937122 AAGATGATTT-GGCATCTCTGTATTTGACAGGGAGCAAATCGAAGACATAGCAGATCTGACCTTT
1 AAGATGATTTGGGCATCTCTGTAATGGACAGGGAGCAAATCGAAGACATAGCAAATCTAACCTTC
* **
80937186 GTTGAGGCAGATCC
66 ATCAAGGCAGATCC
* *
80937200 AAGATGATTTGGGTATCTTTGTAATGGAC-GGAGAGCAAATCGAAGACATTAGCAAATCTAACCT
1 AAGATGATTTGGGCATCTCTGTAATGGACAGG-GAGCAAATCGAAGACA-TAGCAAATCTAACCT
* *
80937264 TCATCAAGGCTGATTC
64 TCATCAAGGCAGATCC
* * ** * *
80937280 AAGATGATTTGGGCGTCTCTGTATTCAACGGGGAGCAGATCGAAGA
1 AAGATGATTTGGGCATCTCTGTAATGGACAGGGAGCAAATCGAAGA
80937326 ACTCAAGACT
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
78 12 0.12
79 30 0.29
80 59 0.57
81 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (79 bp):
AAGATGATTTGGGCATCTCTGTAATGGACAGGGAGCAAATCGAAGACATAGCAAATCTAACCTTC
ATCAAGGCAGATCC
Found at i:80938857 original size:21 final size:21
Alignment explanation
Indices: 80938827--80938937 Score: 72
Period size: 20 Copynumber: 5.3 Consensus size: 21
80938817 TAAATTTTAT
* *
80938827 TATATGTTATATTTTAATATA
1 TATATATTATATTTTACTATA
80938848 TATATATTAT-TTATT-CTAT-
1 TATATATTATATT-TTACTATA
* *
80938867 TATGT-TTATATTTTATTATA
1 TATATATTATATTTTACTATA
*
80938887 TGT-TA-TATATTTTTACTATA
1 TATATATTATA-TTTTACTATA
*
80938907 TATATTATTATTTATTTTACCATA
1 TATA-TATTA--TATTTTACTATA
*
80938931 TTTATAT
1 TATATAT
80938938 GTAAAATATT
Statistics
Matches: 70, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
18 6 0.09
19 14 0.20
20 18 0.26
21 11 0.16
22 2 0.03
23 5 0.07
24 12 0.17
25 2 0.03
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (21 bp):
TATATATTATATTTTACTATA
Found at i:80938897 original size:19 final size:19
Alignment explanation
Indices: 80938814--80938899 Score: 81
Period size: 19 Copynumber: 4.6 Consensus size: 19
80938804 ATATACATCT
*
80938814 TTATAAATTTTATTATATG
1 TTATATATTTTATTATATG
*
80938833 TTATAT-TTTAATATATATATA
1 TTATATATTT--TAT-TATATG
* *
80938854 TTATTTATTCTA-T-TATG
1 TTATATATTTTATTATATG
80938871 TT-TATATTTTATTATATG
1 TTATATATTTTATTATATG
80938889 TTATATATTTT
1 TTATATATTTT
80938900 TACTATATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
16 7 0.13
17 6 0.11
18 10 0.19
19 13 0.25
20 5 0.09
21 10 0.19
22 2 0.04
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (19 bp):
TTATATATTTTATTATATG
Found at i:80939031 original size:42 final size:42
Alignment explanation
Indices: 80938950--80939039 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
80938940 AAAATATTTA
** *
80938950 TTATATCATTTTTATTATTTTATACTTTATCTATTATATGTT
1 TTATATCATTTTTATTATTTTATAAATTATCTATCATATGTT
*
80938992 TTATATCATTATTTATTTTTTTTATAAATT-T-TATCATATGTT
1 TTATATCATT-TTTA-TTATTTTATAAATTATCTATCATATGTT
*
80939034 ATATAT
1 TTATAT
80939040 TTTACTATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 25 0.61
43 5 0.12
44 11 0.27
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (42 bp):
TTATATCATTTTTATTATTTTATAAATTATCTATCATATGTT
Found at i:80940571 original size:23 final size:25
Alignment explanation
Indices: 80940520--80940583 Score: 80
Period size: 23 Copynumber: 2.7 Consensus size: 25
80940510 GTAACTCCTT
* *
80940520 TTTTTATACTAAAATATTATTTTTG
1 TTTTTATAATAAAATATTATTTTTA
80940545 TTTTTA-AATAAAATATT-TTTTTA
1 TTTTTATAATAAAATATTATTTTTA
*
80940568 TTTTTATTA-AAAATAT
1 TTTTTATAATAAAATAT
80940584 ATACAGGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 18 0.51
24 11 0.31
25 6 0.17
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (25 bp):
TTTTTATAATAAAATATTATTTTTA
Found at i:80941160 original size:60 final size:60
Alignment explanation
Indices: 80941081--80941195 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
80941071 TTGTTTTTTA
* *
80941081 TAATTATTTTAAAATTAATTTGTTAGTAATTTAAGATTATA-TTATAAATTTTTGTATTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAAGATTA-AGTTATAAATTGTTGTATTTG
*
80941141 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAAGATTAAGTTATAAATTGTTGT
80941196 GTTTAGTTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
59 1 0.02
60 50 0.98
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAAGATTAAGTTATAAATTGTTGTATTTG
Found at i:80944486 original size:46 final size:45
Alignment explanation
Indices: 80944436--80944607 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
80944426 TGGGCATCCA
*
80944436 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
* *** * *
80944482 AACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
* *
80944529 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
80944574 AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80944608 GCAGGTTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 59 0.58
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCG
Found at i:80944587 original size:93 final size:93
Alignment explanation
Indices: 80944428--80944599 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
80944418 AGGATGTTTG
* **
80944428 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
*
80944493 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
80944521 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGA
80944585 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
80944600 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 3 0.04
93 69 0.96
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:80948394 original size:40 final size:40
Alignment explanation
Indices: 80948349--80948556 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
80948339 CGGAATACAA
* *
80948349 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
80948389 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
*
80948429 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
80948469 CCGGATGTGGTC-ACTAGCAC-AATGACCTTTGGGTCTTAAC
1 CCGGATAT-AACAACTTGCACGAATG-CCTTCGGGTCTTAGC
* ** * ** * *
80948509 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
80948549 CCGGATAT
1 CCGGATAT
80948557 CATTCAATTG
Statistics
Matches: 137, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
39 4 0.03
40 128 0.93
41 5 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:80948489 original size:80 final size:80
Alignment explanation
Indices: 80948349--80948555 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 80
80948339 CGGAATACAA
* * *
80948349 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
80948414 -CCTTCGGGTATTAGC
65 ACCTTCGGGTATTAAC
* * **
80948429 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
* *
80948493 ACCTTTGGGTCTTAAC
65 ACCTTCGGGTATTAAC
* ** * ** * *
80948509 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
80948556 TCATTCAATT
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
79 4 0.04
80 99 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGA
CCTTCGGGTATTAAC
Found at i:80953215 original size:27 final size:26
Alignment explanation
Indices: 80953197--80953267 Score: 117
Period size: 27 Copynumber: 2.7 Consensus size: 26
80953187 CAGTCATGCC
80953197 TTTG-AGATAGGCTCAACCAATTGCG
1 TTTGTAGATAGGCTCAACCAATTGCG
80953222 TTTGTCAGATAGGCTCAACCAATTGCG
1 TTTGT-AGATAGGCTCAACCAATTGCG
80953249 TTTGTTAGATAGGCTCAAC
1 TTTG-TAGATAGGCTCAAC
80953268 TAGTCGCGCC
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
25 4 0.09
27 38 0.88
28 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (26 bp):
TTTGTAGATAGGCTCAACCAATTGCG
Found at i:80953285 original size:27 final size:27
Alignment explanation
Indices: 80953255--80953322 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
80953245 TGCGTTTGTT
* * * *
80953255 AGATAGGCTCAACTAGTCGCGCCTATC
1 AGATAGACACAACCAGTCGCGCCTACC
*
80953282 AGATAGACACAACCATTCGCGCCTACC
1 AGATAGACACAACCAGTCGCGCCTACC
*
80953309 AGATAGACGCAACC
1 AGATAGACACAACC
80953323 TATATACCAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.16
Consensus pattern (27 bp):
AGATAGACACAACCAGTCGCGCCTACC
Found at i:80953604 original size:15 final size:16
Alignment explanation
Indices: 80953577--80953608 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
80953567 TGTCATCAAA
80953577 AAATATATTAAAAAAT
1 AAATATATTAAAAAAT
80953593 AAATAT-TTAAAAAAT
1 AAATATATTAAAAAAT
80953608 A
1 A
80953609 GTTATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATATATTAAAAAAT
Found at i:80954219 original size:18 final size:19
Alignment explanation
Indices: 80954182--80954220 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
80954172 AATACAAAAT
*
80954182 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTATAA
80954201 AATTCAAAAT-ATTTATAA
1 AATTCAAAATAATTTATAA
80954219 AA
1 AA
80954221 ATTTTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTCAAAATAATTTATAA
Found at i:80957995 original size:27 final size:27
Alignment explanation
Indices: 80957942--80957998 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
80957932 TATATTATTA
** *
80957942 TTATTGTACATTATTTTGGTAATTTTT
1 TTATTGTACATTATTTTAATAAATTTT
* *
80957969 TTATTTTATATTATTTTAATAAATTTT
1 TTATTGTACATTATTTTAATAAATTTT
80957996 TTA
1 TTA
80957999 AGACATAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (27 bp):
TTATTGTACATTATTTTAATAAATTTT
Found at i:80958143 original size:23 final size:23
Alignment explanation
Indices: 80958113--80958156 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
80958103 AATTCATGTA
80958113 TTTTTAATTTAAAAAATTTAATT
1 TTTTTAATTTAAAAAATTTAATT
**
80958136 TTTTTAATTTTTAAAATTTAA
1 TTTTTAATTTAAAAAATTTAA
80958157 AATTAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTTTAATTTAAAAAATTTAATT
Found at i:80959611 original size:15 final size:16
Alignment explanation
Indices: 80959593--80959626 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
80959583 AATTCTTTAA
80959593 AAATTATAAAAAT-AT
1 AAATTATAAAAATAAT
*
80959608 AAATTATTAAAATAAT
1 AAATTATAAAAATAAT
80959624 AAA
1 AAA
80959627 ATTACATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATTATAAAAATAAT
Found at i:80959625 original size:24 final size:24
Alignment explanation
Indices: 80959592--80959659 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 24
80959582 TAATTCTTTA
*
80959592 AAAATTATAAAAATATAAATTATT
1 AAAATAATAAAAATATAAATTATT
* *
80959616 AAAATAAT-AAAAT-TACATTTTT
1 AAAATAATAAAAATATAAATTATT
**
80959638 ACTATAATAAAAATATACAATT
1 AAAATAATAAAAATATA-AATT
80959660 TAATTTCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
22 13 0.37
23 10 0.29
24 9 0.26
25 3 0.09
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAATAATAAAAATATAAATTATT
Found at i:80962398 original size:5 final size:5
Alignment explanation
Indices: 80962390--80962428 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
80962380 GAGAAGAGAA
* *
80962390 AAAAG AAAAG AAAAG TAAAG AAGAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
80962429 TGTAATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:80962424 original size:25 final size:27
Alignment explanation
Indices: 80962381--80962433 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 27
80962371 CAACAGAGGG
80962381 AGAAGAGAAAAAAGAAAAGAAAA-GTAA
1 AGAAGAG-AAAAAGAAAAGAAAATGTAA
80962408 AGAAGAG-AAAAGAAAAGAAAATGTAA
1 AGAAGAGAAAAAGAAAAGAAAATGTAA
80962434 TTTTTTATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 4 0.16
27 7 0.28
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.06
Consensus pattern (27 bp):
AGAAGAGAAAAAGAAAAGAAAATGTAA
Found at i:80963375 original size:9 final size:10
Alignment explanation
Indices: 80963335--80963378 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 10
80963325 CTGATGATAT
80963335 TGACGAT-AA
1 TGACGATGAA
*
80963344 AGAC-ATGAA
1 TGACGATGAA
80963353 TGACGATGAA
1 TGACGATGAA
80963363 -GACG-TGAA
1 TGACGATGAA
80963371 TGACGATG
1 TGACGATG
80963379 GAAACATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
8 6 0.21
9 16 0.55
10 7 0.24
ACGTcount: A:0.41, C:0.11, G:0.30, T:0.18
Consensus pattern (10 bp):
TGACGATGAA
Found at i:80963378 original size:18 final size:18
Alignment explanation
Indices: 80963335--80963378 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
80963325 CTGATGATAT
*
80963335 TGACGATAAAGACATGAA
1 TGACGATGAAGACATGAA
*
80963353 TGACGATGAAGACGTGAA
1 TGACGATGAAGACATGAA
80963371 TGACGATG
1 TGACGATG
80963379 GAAACATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.41, C:0.11, G:0.30, T:0.18
Consensus pattern (18 bp):
TGACGATGAAGACATGAA
Found at i:80966082 original size:93 final size:93
Alignment explanation
Indices: 80965921--80966093 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
80965911 CGCCCATAAG
* * **
80965921 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGCGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
80965986 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * * *
80966014 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATTCATAAGTGAACTCGGACTCAAGTTA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
80966079 ACGAGTTTGGATGCC
66 ACGAGTTCGGATGCC
80966094 CAAATATCCT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:80970453 original size:15 final size:16
Alignment explanation
Indices: 80970427--80970456 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80970417 TATTAGTTTC
80970427 ATATTATTTTATGTAA
1 ATATTATTTTATGTAA
80970443 ATATT-TTTTATGTA
1 ATATTATTTTATGTA
80970457 TACTTTCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (16 bp):
ATATTATTTTATGTAA
Found at i:80970899 original size:18 final size:18
Alignment explanation
Indices: 80970849--80970899 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
80970839 ATTATATACA
* *
80970849 TTATATCTTATTATGTGTT
1 TTATATATTATT-TATGTT
*
80970868 TTAT-TATTCTTTTATGTT
1 TTATATATT-ATTTATGTT
80970886 TTATATATTATTTA
1 TTATATATTATTTA
80970900 AGCTATCATG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.67
Consensus pattern (18 bp):
TTATATATTATTTATGTT
Found at i:80972448 original size:153 final size:153
Alignment explanation
Indices: 80972170--80972477 Score: 598
Period size: 153 Copynumber: 2.0 Consensus size: 153
80972160 CTGCGATTGC
80972170 TGCTGATCCAGTAAATCAGAATCCTGCTCCACGCACTATGTATGATTATGCTAAACCTAATTTAA
1 TGCTGATCCAGTAAATCAGAATCCTGCTCCACGCACTATGTATGATTATGCTAAACCTAATTTAA
80972235 CTGGAATTGAGTCAAGTATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAAC
66 CTGGAATTGAGTCAAGTATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAAC
80972300 ACAATTCAAATGATACAACAGTT
131 ACAATTCAAATGATACAACAGTT
*
80972323 TGCTGATCCAGTAAATCAGAATCCTGCTCCATGCACTATGTATGATTATGCTAAACCTAATTTAA
1 TGCTGATCCAGTAAATCAGAATCCTGCTCCACGCACTATGTATGATTATGCTAAACCTAATTTAA
*
80972388 CTGGAATTGCGTCAAGTATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAAC
66 CTGGAATTGAGTCAAGTATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAAC
80972453 ACAATTCAAATGATACAACAGTT
131 ACAATTCAAATGATACAACAGTT
80972476 TG
1 TG
80972478 TTCAGTTTGA
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 153 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (153 bp):
TGCTGATCCAGTAAATCAGAATCCTGCTCCACGCACTATGTATGATTATGCTAAACCTAATTTAA
CTGGAATTGAGTCAAGTATAGTTAGACCTACTATTGCTGCAAATAATTTTGAACTGAAACCTAAC
ACAATTCAAATGATACAACAGTT
Found at i:80974611 original size:64 final size:64
Alignment explanation
Indices: 80974531--80974714 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
80974521 AGACATTATG
** *
80974531 ATGTAGCTAGGTCGCATGGGTAATACTATGTGTACACCATGTAGACAAGAGAGCTAC-AGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGA-GATAA
* * * * *
80974595 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
80974660 AA
63 AA
* * *
80974662 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
80974715 CAAAATTATG
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 24 0.24
66 21 0.21
67 30 0.31
68 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:80990420 original size:35 final size:35
Alignment explanation
Indices: 80990396--80990558 Score: 175
Period size: 35 Copynumber: 4.5 Consensus size: 35
80990386 GGCAAAGTGT
80990396 GAAATGTAGGTATGGTATCATCCATACTGAGCTGC
1 GAAATGTAGGTATGGTATCATCCATACTGAGCTGC
*
80990431 GAAATGTAGGTATGGTATTATCCATACTGAGCTGC
1 GAAATGTAGGTATGGTATCATCCATACTGAGCTGC
* **
80990466 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGG---TATC--ATCCATACTGAGCTGC
* * * * *
80990506 GAAATGTAGGTATGGCAT-TTCCCATACCGAGTTGA
1 GAAATGTAGGTATGGTATCAT-CCATACTGAGCTGC
*
80990541 AAAATGTAGGTATGGTAT
1 GAAATGTAGGTATGGTAT
80990559 TTCAATGAGG
Statistics
Matches: 111, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
34 1 0.01
35 77 0.69
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.31
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATCATCCATACTGAGCTGC
Found at i:80990511 original size:75 final size:75
Alignment explanation
Indices: 80990396--80990563 Score: 206
Period size: 75 Copynumber: 2.3 Consensus size: 75
80990386 GGCAAAGTGT
** *
80990396 GAAATGTAGGTATGG---TATC--ATCCATACTGAGCTGCGAAATGTAGGTATGGTATTAT-CCA
1 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGCTAAGAAATGTAGGTATGGCATT-TCCCA
* *
80990455 TACTGAGCTGC
65 TACCGAGCTGA
*
80990466 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCCCAT
1 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGCTAAGAAATGTAGGTATGGCATTTCCCAT
*
80990531 ACCGAGTTGA
66 ACCGAGCTGA
*
80990541 AAAATGTAGGTATGGTATT-TCAA
1 GAAATGTAGGTATGGTATTATCAA
80990564 TGAGGAAAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 15 0.18
73 4 0.05
74 5 0.06
75 60 0.71
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (75 bp):
GAAATGTAGGTATGGTATTATCAAATCCATACTGAGCTAAGAAATGTAGGTATGGCATTTCCCAT
ACCGAGCTGA
Found at i:80998738 original size:26 final size:26
Alignment explanation
Indices: 80998700--80998807 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
80998690 CGATACAAAT
* *
80998700 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
80998726 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
80998752 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
80998778 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
80998804 TGAT
1 TGAT
80998808 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:81003077 original size:21 final size:21
Alignment explanation
Indices: 81003045--81003094 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
81003035 TCAAATATAT
*
81003045 TTAAAA-ATATAAAAAAAATA
1 TTAAAACAAATAAAAAAAATA
**
81003065 TTAAAACAAATAAAAATGATA
1 TTAAAACAAATAAAAAAAATA
*
81003086 CTAAAACAA
1 TTAAAACAA
81003095 TTCTTAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.22
Consensus pattern (21 bp):
TTAAAACAAATAAAAAAAATA
Found at i:81008483 original size:35 final size:35
Alignment explanation
Indices: 81008439--81008605 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
81008429 TCCTCATTGA
** *
81008439 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
81008474 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
81008514 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
81008549 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
81008584 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
81008606 CTTTTCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:81008522 original size:75 final size:73
Alignment explanation
Indices: 81008434--81008605 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
81008424 GGTTTTCCTC
** * * **
81008434 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
81008498 TCAGTATGG
65 TCAGTATGG
*
81008507 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
81008572 CTCAGTATGG
64 CTCAGTATGG
81008582 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
81008606 CTTTTCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:81010004 original size:26 final size:26
Alignment explanation
Indices: 81009975--81010070 Score: 165
Period size: 26 Copynumber: 3.7 Consensus size: 26
81009965 GGCCGTTACA
*
81009975 TTACCTAACCCATTATCATGGAATAT
1 TTACCTAACCCATTATCATGGAACAT
*
81010001 TTACCTAACCCATTATCATGAAACAT
1 TTACCTAACCCATTATCATGGAACAT
81010027 TTACCTAACCCATTATCATGGAACAT
1 TTACCTAACCCATTATCATGGAACAT
*
81010053 TTACCTAACTCATTATCA
1 TTACCTAACCCATTATCA
81010071 ATTTGTATCA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (26 bp):
TTACCTAACCCATTATCATGGAACAT
Found at i:81011782 original size:31 final size:31
Alignment explanation
Indices: 81011744--81011809 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
81011734 CCACGTGGGA
*
81011744 AACCGAGGAAGCTATGAGAAAATAGTACCCT
1 AACCGAGGAAGCTATGAGAAAACAGTACCCT
81011775 AACCGAGGAAGCTATGAGAAAACAGTACCCT
1 AACCGAGGAAGCTATGAGAAAACAGTACCCT
81011806 AACC
1 AACC
81011810 TATTTTCTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.14
Consensus pattern (31 bp):
AACCGAGGAAGCTATGAGAAAACAGTACCCT
Found at i:81013348 original size:15 final size:15
Alignment explanation
Indices: 81013328--81013358 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
81013318 GGAAAAGATA
81013328 ATGGTACATGGATGT
1 ATGGTACATGGATGT
81013343 ATGGTACATGGATGT
1 ATGGTACATGGATGT
81013358 A
1 A
81013359 AGCAATGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.32, T:0.32
Consensus pattern (15 bp):
ATGGTACATGGATGT
Found at i:81013954 original size:25 final size:23
Alignment explanation
Indices: 81013926--81013976 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
81013916 CTGCCCACCA
81013926 AGTAAATATGGCTTTCCCATAGTAG
1 AGTAAATAT--CTTTCCCATAGTAG
* *
81013951 AGT-ACTATCTTTCCCGTAGTAG
1 AGTAAATATCTTTCCCATAGTAG
81013973 AGTA
1 AGTA
81013977 CCATTGTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
22 16 0.70
24 4 0.17
25 3 0.13
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (23 bp):
AGTAAATATCTTTCCCATAGTAG
Found at i:81015637 original size:111 final size:112
Alignment explanation
Indices: 81015406--81015627 Score: 326
Period size: 111 Copynumber: 2.0 Consensus size: 112
81015396 ACAAAACAAA
*
81015406 TATATT-AAAATACTAAAAATAATATGCCAATAAAAAAAAACATAACATAAAAGATACATAATAA
1 TATATTAAAAATACTAAAAATAACATGCCAATAAAAAAAAACATAACATAAAAGATACATAATAA
* * *
81015470 ATACAAATATTTTTCTTATTATTTTAAAATGATAGTAAGTAAGTTTT
66 ATACAAATATTTTTCTTATTACTTTAAAATGATAATAAGTAAATTTT
* * * *
81015517 TATATTAAAAATACTAAGAATAACATGTCAAT-AACAAAAACATAACATAAACGATACATAATAA
1 TATATTAAAAATACTAAAAATAACATGCCAATAAAAAAAAACATAACATAAAAGATACATAATAA
*
81015581 ATACAAATA-TTTT-TTATTACTTTAAAATGATAATACGTAAATATTT
66 ATACAAATATTTTTCTTATTACTTTAAAATGATAATAAGTAAAT-TTT
81015627 T
1 T
81015628 TGGTTTAAAA
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
109 25 0.25
110 8 0.08
111 45 0.45
112 22 0.22
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.34
Consensus pattern (112 bp):
TATATTAAAAATACTAAAAATAACATGCCAATAAAAAAAAACATAACATAAAAGATACATAATAA
ATACAAATATTTTTCTTATTACTTTAAAATGATAATAAGTAAATTTT
Found at i:81016282 original size:6 final size:6
Alignment explanation
Indices: 81016271--81016322 Score: 58
Period size: 6 Copynumber: 9.3 Consensus size: 6
81016261 CTACCCACCC
* *
81016271 TCTCCT TCTCCT TCTTCT TCTTCT TCT-CT TCTCCT TCT-CT T-T-CT
1 TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT
81016315 TCTCCT TC
1 TCTCCT TC
81016323 ACTCACGGCA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
4 4 0.10
5 9 0.21
6 29 0.69
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (6 bp):
TCTCCT
Found at i:81016722 original size:8 final size:8
Alignment explanation
Indices: 81016709--81016734 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
81016699 ATATGATATT
81016709 TTAAAATA
1 TTAAAATA
81016717 TTAAAATA
1 TTAAAATA
81016725 TTAAAATA
1 TTAAAATA
81016733 TT
1 TT
81016735 TTATAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TTAAAATA
Found at i:81019493 original size:46 final size:46
Alignment explanation
Indices: 81019418--81019540 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 46
81019408 CATATTCTTT
* * * *
81019418 AGTCCGCAACATATGCAAGAG-TTGAGAACCTAAATTTGTATACTTC-
1 AGTCCACAACATATGTAAGAGCTAG-GAACCTAAATTCGTATAC-TCG
* *
81019464 AGTCCACAACATATGTAGGAGCTAGGAACCTAAATTCGTATTCTCG
1 AGTCCACAACATATGTAAGAGCTAGGAACCTAAATTCGTATACTCG
* *
81019510 AGTCCGCAACATATGTAAGAGCTAGCAACCT
1 AGTCCACAACATATGTAAGAGCTAGGAACCT
81019541 GGACAAAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 2 0.03
46 62 0.94
47 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (46 bp):
AGTCCACAACATATGTAAGAGCTAGGAACCTAAATTCGTATACTCG
Found at i:81021539 original size:29 final size:29
Alignment explanation
Indices: 81021497--81021554 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
81021487 CTCTATAACA
81021497 TAACATCACAGCATATCTTCGAGAATTTG
1 TAACATCACAGCATATCTTCGAGAATTTG
*
81021526 TAACATCACAGCATATCTTTGAGAATTTG
1 TAACATCACAGCATATCTTCGAGAATTTG
81021555 AATCACACGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (29 bp):
TAACATCACAGCATATCTTCGAGAATTTG
Found at i:81024209 original size:43 final size:44
Alignment explanation
Indices: 81024134--81024302 Score: 148
Period size: 48 Copynumber: 3.7 Consensus size: 44
81024124 ATGCCATATC
* * * *
81024134 CCAGATATGGTCTTACATGAGATCATAGATCGAAGC-TGATAGT
1 CCAGACATGGTCTTACATGGGATCACATATCGAAGCATGATAGT
* *
81024177 CCAG-CTATGGTCTTACATGGGATCACATATCGATGCCAAAGCCAT-GT
1 CCAGAC-ATGGTCTTACATGGGATCACATATCGAAG-C-ATG--ATAGT
*
81024224 CCCAGACATGGTCTTACATGGGATCACATATCGATACCAATG-TCATGT
1 -CCAGACATGGTCTTACATGGGATCACATATCGA-AGC-ATGAT-A-GT
81024272 CCTAGACATGGTCTTACATGGGATCACATAT
1 CC-AGACATGGTCTTACATGGGATCACATAT
81024303 AACCCTAATG
Statistics
Matches: 104, Mismatches: 9, Indels: 21
0.78 0.07 0.16
Matches are distributed among these distances:
43 29 0.28
44 1 0.01
45 1 0.01
46 1 0.01
47 4 0.04
48 67 0.64
49 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (44 bp):
CCAGACATGGTCTTACATGGGATCACATATCGAAGCATGATAGT
Found at i:81024240 original size:48 final size:48
Alignment explanation
Indices: 81024183--81024302 Score: 204
Period size: 48 Copynumber: 2.5 Consensus size: 48
81024173 TAGTCCAGCT
*
81024183 ATGGTCTTACATGGGATCACATATCGATGCCAAAGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATACCAAAGCCATGTCCCAGAC
* * *
81024231 ATGGTCTTACATGGGATCACATATCGATACCAATGTCATGTCCTAGAC
1 ATGGTCTTACATGGGATCACATATCGATACCAAAGCCATGTCCCAGAC
81024279 ATGGTCTTACATGGGATCACATAT
1 ATGGTCTTACATGGGATCACATAT
81024303 AACCCTAATG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATACCAAAGCCATGTCCCAGAC
Found at i:81030302 original size:46 final size:46
Alignment explanation
Indices: 81030218--81030312 Score: 129
Period size: 46 Copynumber: 2.1 Consensus size: 46
81030208 TAGTTAGAAG
*
81030218 CCTAAATTAGTATTCTCCAATCCACAACATATAAAGGAGCTGGTAA
1 CCTAAATTAGTATTCTCCAATCCACAACATATAAAGGAGCTGGGAA
* ** *
81030264 CCTAAATCTA-TATTCTCCAATCTACAACATATGCAGGAGTTGGGAA
1 CCTAAAT-TAGTATTCTCCAATCCACAACATATAAAGGAGCTGGGAA
81030310 CCT
1 CCT
81030313 GAGCAAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
46 41 0.95
47 2 0.05
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (46 bp):
CCTAAATTAGTATTCTCCAATCCACAACATATAAAGGAGCTGGGAA
Found at i:81033342 original size:17 final size:17
Alignment explanation
Indices: 81033299--81033351 Score: 54
Period size: 16 Copynumber: 3.1 Consensus size: 17
81033289 ACTCAATTCG
* *
81033299 AAAGATGGAAAAATGAAG
1 AAAGAT-GAAAAATAAAA
*
81033317 AAATA-GAAAAATAAAA
1 AAAGATGAAAAATAAAA
81033333 AAAGATGAAAAATATAAA
1 AAAGATGAAAAATA-AAA
81033351 A
1 A
81033352 TTTCATTGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 13 0.45
17 8 0.28
18 8 0.28
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (17 bp):
AAAGATGAAAAATAAAA
Found at i:81034557 original size:2 final size:2
Alignment explanation
Indices: 81034550--81034585 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
81034540 CTTGAGTTAA
81034550 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81034586 TGCTAATTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81034688 original size:29 final size:29
Alignment explanation
Indices: 81034632--81034691 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
81034622 GTTCTAAATT
*
81034632 TTTTTATCATTTATATATTTAGAGTTTAG
1 TTTTTATCATTTATATATTTAGAATTTAG
* *
81034661 TTTTTAT-ATTTTTATTTTTAGAAATTTAG
1 TTTTTATCATTTATATATTTAG-AATTTAG
81034690 TT
1 TT
81034692 CCTCTATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (29 bp):
TTTTTATCATTTATATATTTAGAATTTAG
Found at i:81034744 original size:23 final size:23
Alignment explanation
Indices: 81034718--81034762 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
81034708 TTTAAAATGT
*
81034718 AAATTTATTTGTTAATATTGTTA
1 AAATTTATTTGTTAAAATTGTTA
81034741 AAATTTATTTGTTAAAATTGTT
1 AAATTTATTTGTTAAAATTGTT
81034763 GGTGTGACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (23 bp):
AAATTTATTTGTTAAAATTGTTA
Found at i:81040445 original size:16 final size:15
Alignment explanation
Indices: 81040426--81040460 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
81040416 AAAGAAAAAG
*
81040426 AAAAACCTACCCCAA
1 AAAAACCTAACCCAA
81040441 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
81040456 AAAAA
1 AAAAA
81040461 AGAAGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:81040461 original size:16 final size:15
Alignment explanation
Indices: 81040426--81040461 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
81040416 AAAGAAAAAG
*
81040426 AAAAACCTACCCCAA
1 AAAAACCTACCCAAA
81040441 AAAAACCTAACCCAAA
1 AAAAACCT-ACCCAAA
81040457 AAAAA
1 AAAAA
81040462 GAAGAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.64, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTACCCAAA
Found at i:81040467 original size:46 final size:47
Alignment explanation
Indices: 81040388--81040491 Score: 165
Period size: 46 Copynumber: 2.2 Consensus size: 47
81040378 CCATTAAGCC
81040388 CCCCAAAAAAACCAAACCCAAGAAAAAAAAAGAAAAAGAAAAACCTA
1 CCCCAAAAAAACCAAACCCAAGAAAAAAAAAGAAAAAGAAAAACCTA
* *
81040435 CCCCAAAAAAACCTAACCCAA-AAAAAAGAAGAAAAAGAAAAACCTA
1 CCCCAAAAAAACCAAACCCAAGAAAAAAAAAGAAAAAGAAAAACCTA
* *
81040481 ACCAAAAAAAA
1 CCCCAAAAAAA
81040492 AAAGATAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
46 33 0.62
47 20 0.38
ACGTcount: A:0.68, C:0.23, G:0.06, T:0.03
Consensus pattern (47 bp):
CCCCAAAAAAACCAAACCCAAGAAAAAAAAAGAAAAAGAAAAACCTA
Found at i:81040486 original size:30 final size:29
Alignment explanation
Indices: 81040439--81040508 Score: 97
Period size: 30 Copynumber: 2.4 Consensus size: 29
81040429 AACCTACCCC
*
81040439 AAAAAAACCTAACCCAAAAAAAAGAAGAAA
1 AAAAAAACCTAACCCAAAAAAAAAAAG-AA
*
81040469 AAGAAAAACCTAA-CCAAAAAAAAAAAGAT
1 AA-AAAAACCTAACCCAAAAAAAAAAAGAA
81040498 AAAAAAACCTA
1 AAAAAAACCTA
81040509 GCCACCTAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 9 0.24
29 3 0.08
30 15 0.41
31 10 0.27
ACGTcount: A:0.73, C:0.16, G:0.06, T:0.06
Consensus pattern (29 bp):
AAAAAAACCTAACCCAAAAAAAAAAAGAA
Found at i:81040492 original size:47 final size:47
Alignment explanation
Indices: 81040392--81040492 Score: 150
Period size: 47 Copynumber: 2.1 Consensus size: 47
81040382 TAAGCCCCCC
**
81040392 AAAAAAACCAAACCCAAGAAAAAAAAAGAAAAAGAAAAACCTACCCC
1 AAAAAAACCAAACCCAAGAAAAAAAAAGAAAAAGAAAAACCTACCAA
* *
81040439 AAAAAAACCTAACCCAA-AAAAAAGAAGAAAAAGAAAAACCTAACCAA
1 AAAAAAACCAAACCCAAGAAAAAAAAAGAAAAAGAAAAACCT-ACCAA
81040486 AAAAAAA
1 AAAAAAA
81040493 AAGATAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
46 23 0.47
47 26 0.53
ACGTcount: A:0.71, C:0.20, G:0.06, T:0.03
Consensus pattern (47 bp):
AAAAAAACCAAACCCAAGAAAAAAAAAGAAAAAGAAAAACCTACCAA
Found at i:81040504 original size:46 final size:45
Alignment explanation
Indices: 81040410--81040504 Score: 102
Period size: 46 Copynumber: 2.1 Consensus size: 45
81040400 CAAACCCAAG
* ** * *
81040410 AAAAAAAAAGAAAAAGAAAAACCTACCCCAAAAAAACCTAACCCAA
1 AAAAAAAAAGAAAAAGAAAAACCTACACCAAAAAAA-AAAAACAAA
* *
81040456 AAAAAAGAAGAAAAAGAAAAACCTA-ACCAAAAAAAAAAAGATAAA
1 AAAAAAAAAGAAAAAGAAAAACCTACACCAAAAAAAAAAA-ACAAA
81040501 AAAA
1 AAAA
81040505 CCTAGCCACC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
44 2 0.05
45 15 0.37
46 24 0.59
ACGTcount: A:0.74, C:0.16, G:0.06, T:0.04
Consensus pattern (45 bp):
AAAAAAAAAGAAAAAGAAAAACCTACACCAAAAAAAAAAAACAAA
Found at i:81041046 original size:2 final size:2
Alignment explanation
Indices: 81041041--81041071 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
81041031 TAAATACTAT
81041041 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81041072 TTTTTAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81041049 original size:39 final size:39
Alignment explanation
Indices: 81040977--81041051 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
81040967 TTTATATATA
* * *
81040977 TTATGTATATATTTTTTAATGCCATTAGTTATATATTTC
1 TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
*
81041016 TTATGTATATATTCTTAAATACTATTA-TATATATAT
1 TTATGTATATATTCTTAAATACCATTAGT-TATATAT
81041052 ATATATATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.03
39 30 0.97
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (39 bp):
TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
Found at i:81041197 original size:18 final size:18
Alignment explanation
Indices: 81041174--81041210 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81041164 TGTACATATG
81041174 TATATATATATATACATA
1 TATATATATATATACATA
* *
81041192 TATATATATTTGTACATA
1 TATATATATATATACATA
81041210 T
1 T
81041211 CATTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (18 bp):
TATATATATATATACATA
Found at i:81041252 original size:15 final size:15
Alignment explanation
Indices: 81041232--81041261 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81041222 ATTATTGTTG
81041232 TATATTTTTTATGTA
1 TATATTTTTTATGTA
81041247 TATATTTTTTATGTA
1 TATATTTTTTATGTA
81041262 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TATATTTTTTATGTA
Found at i:81043096 original size:12 final size:12
Alignment explanation
Indices: 81043079--81043114 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
81043069 ATCCATTTGA
81043079 CATTCATGCATT
1 CATTCATGCATT
81043091 CATTCATGCATT
1 CATTCATGCATT
*
81043103 CATTCATACATT
1 CATTCATGCATT
81043115 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:81048124 original size:68 final size:68
Alignment explanation
Indices: 81047977--81048132 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
81047967 AGCCGATTTG
* * * * *
81047977 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
81048042 TATC
65 TATA
* *
81048046 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
81048108 ATATAGTA
62 ATATA-TA
81048116 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
81048133 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:81055587 original size:68 final size:68
Alignment explanation
Indices: 81055440--81055595 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
81055430 AGCCGATTTG
* * * * *
81055440 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
81055505 TATC
65 TATA
* *
81055509 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
81055571 ATATAGTA
62 ATATA-TA
81055579 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
81055596 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:81058399 original size:71 final size:69
Alignment explanation
Indices: 81058297--81058471 Score: 208
Period size: 71 Copynumber: 2.5 Consensus size: 69
81058287 TTTTCAAGGG
* *
81058297 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACATTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTAT
81058361 GTTTT
65 GTTTT
* ** * * *
81058366 CAAAATCAACTCATATTGCGAGAAGTGAATTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTA
81058431 TGTTTT
64 TGTTTT
** * *
81058437 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
81058472 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 30 0.33
71 58 0.64
72 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTATG
TTTT
Found at i:81058686 original size:13 final size:13
Alignment explanation
Indices: 81058668--81058701 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
81058658 CGCTGAGGTA
*
81058668 TTTTCAATTTATG
1 TTTTCAATTTACG
81058681 TTTTCAATTTACG
1 TTTTCAATTTACG
81058694 TTGTTCAA
1 TT-TTCAA
81058702 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (13 bp):
TTTTCAATTTACG
Found at i:81058817 original size:140 final size:140
Alignment explanation
Indices: 81058565--81058969 Score: 679
Period size: 140 Copynumber: 2.9 Consensus size: 140
81058555 TGTTTTAATT
*
81058565 TCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
1 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
* * *
81058630 TGCGAGAGGTGAGTTGAACCTCAGGTCACGCTGAGGTATTTTCAATTTATGTTTTCAATTTACGT
66 TGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGT
81058695 TGTTCAAGAA
131 TGTTCAAGAA
* *
81058705 TCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACCTTTTCAAAATCAGCTCATAT
1 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
* *
81058770 TGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTAAGGTATTTTCAATTTCTGTTTTCAATTTATGT
66 TGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGT
81058835 TGTTCAAGAA
131 TGTTCAAGAA
81058845 TCAACTCATATTGCGAGAGGTGGGTT-AACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
1 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
*
81058909 TGCGAGAGGAGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAA
66 TGCGAGAGGTGAGTTGAGCCTCAGG-T--CATGCTGAGGTATTTTCAATTTCTGT-TTTCAA
81058970 AAAAAAAAAA
Statistics
Matches: 249, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
138 2 0.01
139 59 0.24
140 157 0.63
141 25 0.10
142 6 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
TGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGT
TGTTCAAGAA
Found at i:81058826 original size:13 final size:13
Alignment explanation
Indices: 81058808--81058841 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
81058798 TGCTAAGGTA
*
81058808 TTTTCAATTTCTG
1 TTTTCAATTTATG
81058821 TTTTCAATTTATG
1 TTTTCAATTTATG
81058834 TTGTTCAA
1 TT-TTCAA
81058842 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:81059093 original size:72 final size:72
Alignment explanation
Indices: 81058976--81059116 Score: 282
Period size: 72 Copynumber: 2.0 Consensus size: 72
81058966 TCAAAAAAAA
81058976 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
81059041 TGTTTCC
66 TGTTTCC
81059048 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
81059113 TGTT
66 TGTT
81059117 CAAAATGAGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTCC
Found at i:81059127 original size:49 final size:49
Alignment explanation
Indices: 81059070--81059165 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
81059060 ATATTGCGAG
*
81059070 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
81059119 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
81059166 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:81059213 original size:121 final size:121
Alignment explanation
Indices: 81058998--81059237 Score: 417
Period size: 121 Copynumber: 2.0 Consensus size: 121
81058988 ATATTGCGAG
*
81058998 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTCCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTCCAAAATTCAACTCATA
*
81059063 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
*
81059119 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTCCAAAATTCAACTCATA
** **
81059184 TTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
81059238 TTCAAAATTC
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 112 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTCCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:81059239 original size:72 final size:72
Alignment explanation
Indices: 81059119--81059316 Score: 333
Period size: 72 Copynumber: 2.8 Consensus size: 72
81059109 TTTCTGTTCA
81059119 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
81059184 TTGCGAG
66 TTGCGAG
** **
81059191 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
81059256 TTGCGAG
66 TTGCGAG
* * *
81059263 AAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTTGTTTTCAAAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAA
81059317 CAAAAAAAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 115 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAG
Found at i:81060170 original size:46 final size:48
Alignment explanation
Indices: 81060120--81060211 Score: 136
Period size: 46 Copynumber: 2.0 Consensus size: 48
81060110 TTAAGCCCCT
*
81060120 CCAAAAAACC-AAACCCAAGAAAAAAA-AA-AAGAAAGAAAAACCTACC
1 CCAAAAAACCTAAACCCAA-AAAAAAAGAAGAAAAAAGAAAAACCTACC
*
81060166 CCAAAAAACCTAACCCCAAAAAAAAAGAAGAAAAAAGAAAAACCTA
1 CCAAAAAACCTAAACCCAAAAAAAAAGAAGAAAAAAGAAAAACCTA
81060212 ACAAAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
46 17 0.41
47 9 0.22
48 15 0.37
ACGTcount: A:0.67, C:0.23, G:0.07, T:0.03
Consensus pattern (48 bp):
CCAAAAAACCTAAACCCAAAAAAAAAGAAGAAAAAAGAAAAACCTACC
Found at i:81060173 original size:15 final size:15
Alignment explanation
Indices: 81060155--81060188 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
81060145 AAAAAGAAAG
81060155 AAAAACCT-ACCCCA
1 AAAAACCTAACCCCA
81060169 AAAAACCTAACCCCA
1 AAAAACCTAACCCCA
81060184 AAAAA
1 AAAAA
81060189 AAAGAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.59, C:0.35, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCCA
Found at i:81060220 original size:48 final size:46
Alignment explanation
Indices: 81060122--81060221 Score: 121
Period size: 48 Copynumber: 2.1 Consensus size: 46
81060112 AAGCCCCTCC
* * **
81060122 AAAAAACCAAACCCAAGAAAAAAAAAAAGAAAGAAAAACCTACCCC
1 AAAAAACCAAACCCAAGAAAAAAAAAAAAAAAGAAAAACCTAACAA
*
81060168 AAAAAACCTAACCCCAA-AAAAAAAGAAGAAAAAAGAAAAACCTAACAA
1 AAAAAACC-AAACCCAAGAAAAAAA-AA-AAAAAAGAAAAACCTAACAA
81060216 AAAAAA
1 AAAAAA
81060222 AAAGATAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 15 0.33
47 9 0.20
48 22 0.48
ACGTcount: A:0.71, C:0.20, G:0.06, T:0.03
Consensus pattern (46 bp):
AAAAAACCAAACCCAAGAAAAAAAAAAAAAAAGAAAAACCTAACAA
Found at i:81060225 original size:33 final size:34
Alignment explanation
Indices: 81060169--81060234 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
81060159 ACCTACCCCA
**
81060169 AAAAACCTAACCCCAAAAAAAAAGA-AGAAAAAAG
1 AAAAACCTAACCAAAAAAAAAAAGATA-AAAAAAG
81060203 AAAAACCTAA-CAAAAAAAAAAAGATAAAAAAA
1 AAAAACCTAACCAAAAAAAAAAAGATAAAAAAA
81060235 CCTAGCCACC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 18 0.62
34 11 0.38
ACGTcount: A:0.76, C:0.14, G:0.06, T:0.05
Consensus pattern (34 bp):
AAAAACCTAACCAAAAAAAAAAAGATAAAAAAAG
Found at i:81060778 original size:2 final size:2
Alignment explanation
Indices: 81060773--81060801 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
81060763 TAAATACTAT
81060773 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81060802 TTTTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81060795 original size:38 final size:36
Alignment explanation
Indices: 81060701--81060797 Score: 97
Period size: 38 Copynumber: 2.6 Consensus size: 36
81060691 TTTAGGTATT
* *
81060701 TTATATATATTATGTATATATTTTTAATGCCATTAG
1 TTATATATATTATGTATATATTTTAAATACCATTAG
* *
81060737 TTATATATTTCTTATGTATATATTCTTAAATACTATTA-
1 TTATATA--TATTATGTATATATT-TTAAATACCATTAG
*
81060775 TATATATATATATATATATATAT
1 T-TATATATAT-TATGTATATAT
81060798 ATATTTTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
36 7 0.14
37 2 0.04
38 25 0.50
39 16 0.32
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.54
Consensus pattern (36 bp):
TTATATATATTATGTATATATTTTAAATACCATTAG
Found at i:81060932 original size:18 final size:18
Alignment explanation
Indices: 81060909--81060945 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81060899 TGTACATATG
81060909 TATATATATATATACATA
1 TATATATATATATACATA
* *
81060927 TATATATATTTGTACATA
1 TATATATATATATACATA
81060945 T
1 T
81060946 CATTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (18 bp):
TATATATATATATACATA
Found at i:81060987 original size:15 final size:15
Alignment explanation
Indices: 81060967--81060996 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81060957 ATTATTGTTG
81060967 TATATTTTTTATGTA
1 TATATTTTTTATGTA
81060982 TATATTTTTTATGTA
1 TATATTTTTTATGTA
81060997 CGTTTTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TATATTTTTTATGTA
Found at i:81069158 original size:43 final size:42
Alignment explanation
Indices: 81069119--81069250 Score: 133
Period size: 44 Copynumber: 3.0 Consensus size: 42
81069109 TTTTACATGT
* *
81069119 AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACAA
1 AATCAAATA-CGATGCCAATGTCCCAGACAGGGTCTTACACAA
* *
81069162 AATCAAATACGATGCCAATGTTCCAGACATGGTCTTACACATA
1 AATCAAATACGATGCCAATGTCCCAGACAGGGTCTTACACA-A
* * *
81069205 AATCATAAGT-CGATGCCAACGTCCTAGA-TGTGGTCTTACACGAA
1 AATCA-AA-TACGATGCCAATGTCCCAGACAG-GGTCTTACAC-AA
81069249 AA
1 AA
81069251 CACATATCAG
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
42 28 0.37
43 15 0.20
44 30 0.40
45 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTCCCAGACAGGGTCTTACACAA
Found at i:81069188 original size:42 final size:42
Alignment explanation
Indices: 81069119--81069250 Score: 135
Period size: 42 Copynumber: 3.0 Consensus size: 42
81069109 TTTTACATGT
* *
81069119 AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACAA
1 AATCAAATA-CGATGCCAATGTTCCAGATAGGGTCTTACACAA
* *
81069162 AATCAAATACGATGCCAATGTTCCAGACATGGTCTTACACATA
1 AATCAAATACGATGCCAATGTTCCAGATAGGGTCTTACACA-A
*
81069205 AATCATAAGT-CGATGCCAACG-TCCTAGAT-GTGGTCTTACACGAA
1 AATCA-AA-TACGATGCCAATGTTCC-AGATAG-GGTCTTACAC-AA
81069249 AA
1 AA
81069251 CACATATCAG
Statistics
Matches: 76, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
42 28 0.37
43 18 0.24
44 28 0.37
45 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTTCCAGATAGGGTCTTACACAA
Found at i:81074087 original size:45 final size:45
Alignment explanation
Indices: 81074023--81074145 Score: 167
Period size: 45 Copynumber: 2.7 Consensus size: 45
81074013 TAGGATTCTA
*
81074023 ATATGTGTTTCTGA-GTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTT-TCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
81074068 ATATGTGTTTTCATGTAAGACTACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * *
81074113 TTATGTGGTTACGTGTAAGACCATGTCTGGGAC
1 ATATGTGTTTTCATGTAAGACCACGTCTGGGAC
81074146 ATCGACATTG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 2 0.03
45 67 0.97
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (45 bp):
ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:81082094 original size:30 final size:30
Alignment explanation
Indices: 81082058--81082117 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
81082048 ATCGAAGTTG
*
81082058 TTATATTATTAATTTTCGTGTTTGAATCCT
1 TTATATTATTAATTTTCGGGTTTGAATCCT
*
81082088 TTATATTATTAATTTTCGGGTTTGGATCCT
1 TTATATTATTAATTTTCGGGTTTGAATCCT
81082118 AAGTAGGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.22, C:0.10, G:0.13, T:0.55
Consensus pattern (30 bp):
TTATATTATTAATTTTCGGGTTTGAATCCT
Found at i:81083268 original size:15 final size:15
Alignment explanation
Indices: 81083250--81083280 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
81083240 AAAACATATC
81083250 AATTCAACTTATTCA
1 AATTCAACTTATTCA
81083265 AATTCAACTTATTCA
1 AATTCAACTTATTCA
81083280 A
1 A
81083281 TCATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTCAACTTATTCA
Found at i:81086776 original size:36 final size:38
Alignment explanation
Indices: 81086690--81086779 Score: 103
Period size: 36 Copynumber: 2.4 Consensus size: 38
81086680 ACCACTTCGA
** *
81086690 CCACCCTACACACCACAATTGGGCTACGGTAGGCCCAT
1 CCACCCTACACACCACAAAAGGACTACGGTAGGCCCAT
* * *
81086728 CCACCTTGCACACCA-AAAAGGACTATGGTA-GCCCAT
1 CCACCCTACACACCACAAAAGGACTACGGTAGGCCCAT
*
81086764 CGACCCTACACACCAC
1 CCACCCTACACACCAC
81086780 GATAGTGGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
36 18 0.43
37 11 0.26
38 13 0.31
ACGTcount: A:0.30, C:0.40, G:0.16, T:0.14
Consensus pattern (38 bp):
CCACCCTACACACCACAAAAGGACTACGGTAGGCCCAT
Found at i:81091896 original size:46 final size:46
Alignment explanation
Indices: 81091829--81091957 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
81091819 TGTAACCCGA
* * * *
81091829 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81091875 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81091921 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81091958 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81093962 original size:15 final size:15
Alignment explanation
Indices: 81093887--81093962 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
81093877 AGAAAACCGA
81093887 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
81093902 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
81093916 A-ATAA-AAATCC-AG
1 ATA-AAGAAATCCAAG
* *
81093929 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
81093945 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
81093960 ATA
1 ATA
81093963 CGATACTATG
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
13 5 0.11
14 10 0.22
15 29 0.64
16 1 0.02
ACGTcount: A:0.55, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:81096968 original size:46 final size:45
Alignment explanation
Indices: 81096867--81096960 Score: 136
Period size: 46 Copynumber: 2.1 Consensus size: 45
81096857 TGTAACCCGC
* * *
81096867 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAA
*
81096913 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
81096957 CCAT
1 CCAT
81096961 CCTAGTGACA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 9 0.20
46 35 0.80
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
Found at i:81098304 original size:19 final size:19
Alignment explanation
Indices: 81098251--81098318 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
81098241 AGAATCAAAC
* *
81098251 AAAAGAAAAAAATAAAATA
1 AAAACAAAAATATAAAATA
** * *
81098270 AAATGTAACAAT-TAAATTA
1 AAA-ACAAAAATATAAAATA
81098289 AAAACAAAAATATAAAATA
1 AAAACAAAAATATAAAATA
81098308 AAAACAAAAAT
1 AAAACAAAAAT
81098319 GGCTAAATTA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
18 5 0.13
19 29 0.76
20 4 0.11
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (19 bp):
AAAACAAAAATATAAAATA
Found at i:81101426 original size:19 final size:19
Alignment explanation
Indices: 81101402--81101441 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
81101392 AAAGAATTGT
81101402 TGCATGAACTTTGCCATGA
1 TGCATGAACTTTGCCATGA
81101421 TGCATGAACTTTGCCATGA
1 TGCATGAACTTTGCCATGA
81101440 TG
1 TG
81101442 TTTTGATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (19 bp):
TGCATGAACTTTGCCATGA
Found at i:81101566 original size:16 final size:16
Alignment explanation
Indices: 81101541--81101575 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
81101531 ATTGAACTGC
81101541 TATTGTTTGAATGG-T
1 TATTGTTTGAATGGAT
81101556 TATTAGTTTGAATGGAT
1 TATT-GTTTGAATGGAT
81101573 TAT
1 TAT
81101576 ATGCCTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 10 0.56
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (16 bp):
TATTGTTTGAATGGAT
Found at i:81101801 original size:25 final size:25
Alignment explanation
Indices: 81101767--81101823 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
81101757 TTTTGAGAGT
81101767 TTGATTTTTAACAAGAAACAAAATG
1 TTGATTTTTAACAAGAAACAAAATG
* *
81101792 TTGATTTTTAACGAGAAACAGAATG
1 TTGATTTTTAACAAGAAACAAAATG
81101817 TTG-TTTT
1 TTGATTTT
81101824 CATATCAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (25 bp):
TTGATTTTTAACAAGAAACAAAATG
Found at i:81103072 original size:21 final size:21
Alignment explanation
Indices: 81103046--81103098 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
81103036 AAAAATGGCC
81103046 GATGTCACGACGTGGGACTTT
1 GATGTCACGACGTGGGACTTT
*
81103067 GATGTCGCGACGTGGGACTTT
1 GATGTCACGACGTGGGACTTT
81103088 GATGTCACGAC
1 GATGTCACGAC
81103099 ATCGTGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.19, C:0.21, G:0.34, T:0.26
Consensus pattern (21 bp):
GATGTCACGACGTGGGACTTT
Found at i:81105271 original size:34 final size:33
Alignment explanation
Indices: 81105227--81105293 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
81105217 TCGATCAAAT
81105227 GCAATCTGGGCCTAAGCCCATTTCAGTTTCAGTA
1 GCAATCTGGGCCTAAGCCCA-TTCAGTTTCAGTA
* * *
81105261 GCAATTTGGGCCTTAGCCCATTCAGTTTTAGTA
1 GCAATCTGGGCCTAAGCCCATTCAGTTTCAGTA
81105294 TCAGATATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 12 0.40
34 18 0.60
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (33 bp):
GCAATCTGGGCCTAAGCCCATTCAGTTTCAGTA
Found at i:81114167 original size:30 final size:30
Alignment explanation
Indices: 81114081--81114344 Score: 282
Period size: 30 Copynumber: 8.8 Consensus size: 30
81114071 TGACTTTAGG
* * *
81114081 TTGCTCACATAAGCTGACATTATGATAGAA
1 TTGCTCACACAAGCTGACATTATAATAGAT
* * * * *
81114111 ATGCTTACACAAGCTAAAATTGTAATAGAT
1 TTGCTCACACAAGCTGACATTATAATAGAT
*
81114141 TTGCTCACACAAGCTGACTTTATAATAG-T
1 TTGCTCACACAAGCTGACATTATAATAGAT
*
81114170 ATTGCTCACACAAGTTGACATTATAATAGAT
1 -TTGCTCACACAAGCTGACATTATAATAGAT
* * *
81114201 TTGCTCACACAAGCTAACTTTATGATAG-T
1 TTGCTCACACAAGCTGACATTATAATAGAT
* *
81114230 ATTGCTCACACAAGTTGACATTATAGTAGAT
1 -TTGCTCACACAAGCTGACATTATAATAGAT
* * *
81114261 TTGCTCACACAAGTTGACTTTATAATA-AGG
1 TTGCTCACACAAGCTGACATTATAATAGA-T
* * *
81114291 TTGCTCACACAAGTTGACATTATGATAGAA
1 TTGCTCACACAAGCTGACATTATAATAGAT
*
81114321 TTGCTCACATAAGCTGACATTATA
1 TTGCTCACACAAGCTGACATTATA
81114345 TCAAGATCAC
Statistics
Matches: 194, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
29 3 0.02
30 188 0.97
31 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (30 bp):
TTGCTCACACAAGCTGACATTATAATAGAT
Done.