Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 271 of 328
Found at i:81114181 original size:60 final size:60
Alignment explanation
Indices: 81114081--81114344 Score: 341
Period size: 60 Copynumber: 4.4 Consensus size: 60
81114071 TGACTTTAGG
* * * * * * * * * *
81114081 TTGCTCACATAAGCTGACATTATGATAGAAATGCTTACACAAGCTAAAATTGTAATAGAT
1 TTGCTCACACAAGCTGACTTTATAATAGTATTGCTCACACAAGTTGACATTATAATAGAT
81114141 TTGCTCACACAAGCTGACTTTATAATAGTATTGCTCACACAAGTTGACATTATAATAGAT
1 TTGCTCACACAAGCTGACTTTATAATAGTATTGCTCACACAAGTTGACATTATAATAGAT
* * *
81114201 TTGCTCACACAAGCTAACTTTATGATAGTATTGCTCACACAAGTTGACATTATAGTAGAT
1 TTGCTCACACAAGCTGACTTTATAATAGTATTGCTCACACAAGTTGACATTATAATAGAT
* * * *
81114261 TTGCTCACACAAGTTGACTTTATAATAAG-GTTGCTCACACAAGTTGACATTATGATAGAA
1 TTGCTCACACAAGCTGACTTTATAAT-AGTATTGCTCACACAAGTTGACATTATAATAGAT
* *
81114321 TTGCTCACATAAGCTGACATTATA
1 TTGCTCACACAAGCTGACTTTATA
81114345 TCAAGATCAC
Statistics
Matches: 180, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
60 178 0.99
61 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (60 bp):
TTGCTCACACAAGCTGACTTTATAATAGTATTGCTCACACAAGTTGACATTATAATAGAT
Found at i:81124076 original size:17 final size:17
Alignment explanation
Indices: 81124054--81124092 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
81124044 AAATATTTTT
*
81124054 AAAATAAATGCAAAAAA
1 AAAATAAATCCAAAAAA
*
81124071 AAAATAACTCCAAAAAA
1 AAAATAAATCCAAAAAA
*
81124088 TAAAT
1 AAAAT
81124093 TAATTAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.72, C:0.10, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAATAAATCCAAAAAA
Found at i:81128542 original size:2 final size:2
Alignment explanation
Indices: 81128535--81128569 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
81128525 TCATGGCATG
81128535 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81128570 CATCTCAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:81129210 original size:44 final size:41
Alignment explanation
Indices: 81129114--81129234 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 41
81129104 TGTAATTAAT
* * *
81129114 ATCGATGCCACTATCCCAGACAGGGTTTTACACGAAATCAA
1 ATCGATGCCAATATCCCAGACATGGTCTTACACGAAATCAA
* *
81129155 ATACGATGCCAATTTCCCAGACATGGTCTTATACGTAAATCTCAA
1 AT-CGATGCCAATATCCCAGACATGGTCTTACACG-AAA--TCAA
** **
81129200 ATCGATGCCAACGTCCCAGATGTGGTCTTACACGA
1 ATCGATGCCAATATCCCAGACATGGTCTTACACGA
81129235 TAACACATAT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
41 2 0.03
42 27 0.41
43 4 0.06
44 27 0.41
45 6 0.09
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (41 bp):
ATCGATGCCAATATCCCAGACATGGTCTTACACGAAATCAA
Found at i:81130196 original size:18 final size:18
Alignment explanation
Indices: 81130169--81130258 Score: 117
Period size: 18 Copynumber: 5.0 Consensus size: 18
81130159 TTACACAACT
* *
81130169 TGGCATACGACGGTGTGG
1 TGGCACACGACCGTGTGG
*
81130187 TGGCACACGACGGTGTGG
1 TGGCACACGACCGTGTGG
*
81130205 TGGCACACAACCGTGTGG
1 TGGCACACGACCGTGTGG
*
81130223 TGGCACATGACCGTGTGG
1 TGGCACACGACCGTGTGG
* *
81130241 TGGTACACGACTGTGTGG
1 TGGCACACGACCGTGTGG
81130259 CTCACATGCC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.18, C:0.21, G:0.40, T:0.21
Consensus pattern (18 bp):
TGGCACACGACCGTGTGG
Found at i:81132620 original size:14 final size:14
Alignment explanation
Indices: 81132603--81132632 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81132593 TAGCCAACTA
*
81132603 CAAGACCATTTAAC
1 CAAGACCATTCAAC
81132617 CAAGACCATTCAAC
1 CAAGACCATTCAAC
81132631 CA
1 CA
81132633 TACCACATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.33, G:0.07, T:0.17
Consensus pattern (14 bp):
CAAGACCATTCAAC
Found at i:81133883 original size:17 final size:19
Alignment explanation
Indices: 81133847--81133887 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
81133837 GCCATATAAT
81133847 TATCATGAACCAAATCATA
1 TATCATGAACCAAATCATA
*
81133866 TATCAT-AA-CAAATTATA
1 TATCATGAACCAAATCATA
81133883 T-TCAT
1 TATCAT
81133888 TTAGTATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 4 0.19
17 9 0.43
18 2 0.10
19 6 0.29
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.34
Consensus pattern (19 bp):
TATCATGAACCAAATCATA
Found at i:81137713 original size:28 final size:29
Alignment explanation
Indices: 81137646--81137725 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 29
81137636 ATGTGAAAAA
* *
81137646 GGCACTTAGTGTCCGAAACTTCCAGAAAT
1 GGCACTTAGTGTACGAAACATCCAGAAAT
* * *
81137675 GGCACTTAGTGTGCGAGACATCCAG-GAT
1 GGCACTTAGTGTACGAAACATCCAGAAAT
*
81137703 GGCACTTAGTGTACGATACATCC
1 GGCACTTAGTGTACGAAACATCC
81137726 GTGAAGGAAC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
28 23 0.51
29 22 0.49
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (29 bp):
GGCACTTAGTGTACGAAACATCCAGAAAT
Found at i:81146013 original size:20 final size:22
Alignment explanation
Indices: 81145973--81146016 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 22
81145963 ATTTTATAAA
81145973 TTATTTAATAATTAAAAATAATT
1 TTATTTAATAATT-AAAATAATT
81145996 TTATTT-ATAATT-AAATAATT
1 TTATTTAATAATTAAAATAATT
81146016 T
1 T
81146017 GAAAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.43
22 6 0.29
23 6 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTATTTAATAATTAAAATAATT
Found at i:81155297 original size:19 final size:18
Alignment explanation
Indices: 81155240--81155304 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 18
81155230 CTAGTAATTT
* *
81155240 TTTTTAAAATAAATTAAA
1 TTTTTAAAATTAATTGAA
* *
81155258 ATTTT-AAGTT-ATTGAA
1 TTTTTAAAATTAATTGAA
81155274 TTTTTAAAATTAATTGATA
1 TTTTTAAAATTAATTGA-A
*
81155293 TTTTTATAATTA
1 TTTTTAAAATTA
81155305 GAGCTATACA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
16 9 0.24
17 7 0.19
18 9 0.24
19 12 0.32
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (18 bp):
TTTTTAAAATTAATTGAA
Found at i:81159598 original size:25 final size:25
Alignment explanation
Indices: 81159541--81159609 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
81159531 AAATAATTCT
*
81159541 ATTTTAAAATATTAAAATTTAATAA
1 ATTTTTAAATATTAAAATTTAATAA
*** * *
81159566 AAAATTAAATATTAATATTTAATAC
1 ATTTTTAAATATTAAAATTTAATAA
*
81159591 ATTTTTAATATATTTAAAT
1 ATTTTTAA-ATATTAAAAT
81159610 CTCATAATTT
Statistics
Matches: 32, Mismatches: 11, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
25 24 0.75
26 8 0.25
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTTTTAAATATTAAAATTTAATAA
Found at i:81162089 original size:47 final size:46
Alignment explanation
Indices: 81161889--81162252 Score: 287
Period size: 47 Copynumber: 7.8 Consensus size: 46
81161879 TGGGATATAC
* *
81161889 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGTG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-C-TG
* * * * * *
81161939 TGCTGATGCATGTCCCAGACATATCTTACACTAG--CACAACT-TT
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCTG
* **
81161982 TAGCCGATGCGTGTCCCAGACACATCTTACACTGG-T-T-ATCTCTG
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCTG
*
81162026 TCGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCCCTCATCTCTG
1 T----GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCTG
* * * *
81162076 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCTG
* * * * *
81162125 -GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCT-AG
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCTG
* * **
81162169 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGT-AATG
1 -TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCTG
*
81162217 TGGCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGC
81162253 ACACAAATCA
Statistics
Matches: 257, Mismatches: 39, Indels: 40
0.76 0.12 0.12
Matches are distributed among these distances:
43 5 0.02
44 32 0.12
45 1 0.00
46 44 0.17
47 85 0.33
48 58 0.23
49 18 0.07
50 14 0.05
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCTG
Found at i:81162142 original size:94 final size:93
Alignment explanation
Indices: 81161889--81162249 Score: 385
Period size: 94 Copynumber: 3.9 Consensus size: 93
81161879 TGGGATATAC
* * *
81161889 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGTGTGCTGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTC
* * * *
81161953 CCAGACATATCTTACACTAG--CACAACTTT
63 CCAGACATGTCTTACACTAGCCCTCATCTTG
* ** * *
81161982 TAGCCGATG-CGTGTCCCAGACA-CATCTTACACTGGTTATC-TCTGTCGA-GGCCGATGCATGT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGT
*
81162043 CCCAGACATGTCTTACACTGGCCCTCATCTCTG
62 CCCAGACATGTCTTACACTAGCCCTCATCT-TG
* *
81162076 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
* *
81162141 GACATGTCTTACACTAGCCCTCGTCTAG
66 GACATGTCTTACACTAGCCCTCATCTTG
* * * * * *
81162169 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTAATGTGGCCGAAGCATGTCCC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCC
81162234 AGACATGTCTTACACT
65 AGACATGTCTTACACT
81162250 GGCACACAAA
Statistics
Matches: 224, Mismatches: 31, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
91 31 0.14
92 15 0.07
93 27 0.12
94 132 0.59
95 18 0.08
96 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCCCTCATCTTG
Found at i:81162183 original size:141 final size:137
Alignment explanation
Indices: 81161889--81162255 Score: 393
Period size: 141 Copynumber: 2.6 Consensus size: 137
81161879 TGGGATATAC
*
81161889 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGTGTGCTGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-T-C-TGTGCTGATGCATGTCC
* * * * * *
81161954 CAGACATATCTTACACTAGCACAACTTTTAGCCGATGCGTGTCCCAGACACATCTTACACTGGTT
63 CAGACATGTCTTACACTGGCACAACGTATAGCCGATGCATGTCCCAGACACATCTTACACTAG-T
*
81162019 ATCTCTGTCGA
127 ACCTCTGTCGA
* *
81162030 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCCCTCATCTCTGTGCTGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TCTGTGCTGATG-CATGTCCC
* * **
81162093 AGACATGGTCTTACACTGGCTATCATA-GTATGGCTGATGCATGTCCCAGACATGTCTTACACTA
64 AGACAT-GTCTTACACTGGC-A-CA-ACGTATAGCCGATGCATGTCCCAGACACATCTTACACTA
*
81162157 G-CCCTC-GTCTAGA
125 GTACCTCTGTC--GA
* * ** * *
81162170 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTAATGTGGCCGAAGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCTGT-GCTGATGCATGTCCCA
81162235 GACATGTCTTACACTGGCACA
65 GACATGTCTTACACTGGCACA
81162256 CAAATCACCC
Statistics
Matches: 192, Mismatches: 24, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
137 10 0.05
138 20 0.10
139 34 0.18
140 37 0.19
141 68 0.35
142 23 0.12
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (137 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCTGTGCTGATGCATGTCCCAG
ACATGTCTTACACTGGCACAACGTATAGCCGATGCATGTCCCAGACACATCTTACACTAGTACCT
CTGTCGA
Found at i:81166375 original size:9 final size:9
Alignment explanation
Indices: 81166363--81166392 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
81166353 AGAATAAGTA
81166363 AAATAAAAT
1 AAATAAAAT
*
81166372 AAATAATAT
1 AAATAAAAT
81166381 AAATAAAAT
1 AAATAAAAT
81166390 AAA
1 AAA
81166393 AAATAATAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAAAT
Found at i:81166384 original size:18 final size:18
Alignment explanation
Indices: 81166363--81166397 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81166353 AGAATAAGTA
*
81166363 AAATAAAATAAATAATAT
1 AAATAAAATAAAAAATAT
81166381 AAATAAAATAAAAAATA
1 AAATAAAATAAAAAATA
81166398 ATAGGATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (18 bp):
AAATAAAATAAAAAATAT
Found at i:81169539 original size:8 final size:8
Alignment explanation
Indices: 81169526--81169603 Score: 65
Period size: 8 Copynumber: 10.0 Consensus size: 8
81169516 TTATGTTTAG
81169526 TATATTAT
1 TATATTAT
81169534 TATATTAT
1 TATATTAT
81169542 TATATTAT
1 TATATTAT
* *
81169550 TATATAAA
1 TATATTAT
* *
81169558 GATACT-T
1 TATATTAT
*
81169565 TATGTT-T
1 TATATTAT
81169572 TATATATAT
1 TATAT-TAT
81169581 TATATTA-
1 TATATTAT
81169588 TAT-TATAT
1 TATAT-TAT
81169596 TATATTAT
1 TATATTAT
81169604 ATTATATATA
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
6 1 0.02
7 13 0.24
8 34 0.62
9 7 0.13
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (8 bp):
TATATTAT
Found at i:81169586 original size:5 final size:5
Alignment explanation
Indices: 81169571--81169610 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
81169561 ACTTTATGTT
81169571 TTATA -TATA TTATA TTATA TTATA TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
81169611 ATAAACTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 30 0.88
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:81171225 original size:45 final size:45
Alignment explanation
Indices: 81171161--81171440 Score: 375
Period size: 45 Copynumber: 6.1 Consensus size: 45
81171151 CTGTTACCGC
* *
81171161 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
81171206 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
81171251 TACTGTTACCGTTACCGATTCGGCAC--TATGTGCCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * * *
81171294 TACTCTTACCATTACTGATTTGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
81171339 TACTGTTACCGTTACCGATTTGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
81171384 TACTATTACCGTTACCGTTACCGATTCAGCACTTTGTGTGTTGGATATTGT
1 TAC---T---GTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
81171435 TACTGT
1 TACTGT
81171441 ACTGCTACTG
Statistics
Matches: 210, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
43 37 0.18
45 131 0.62
48 2 0.01
51 40 0.19
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:81171322 original size:88 final size:89
Alignment explanation
Indices: 81171161--81171400 Score: 356
Period size: 88 Copynumber: 2.7 Consensus size: 89
81171151 CTGTTACCGC
* * * *
81171161 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACTGTTACCGATT
1 TACTGTTACCGTTACCGATTCGGCAC-TTGTGTGTCGAATATTGTTACTATTACCGTTACCGATT
81171226 CGGCACTTTGTGTGTCGAATATTGT
65 CGGCACTTTGTGTGTCGAATATTGT
* * * * * *
81171251 TACTGTTACCGTTACCGATTCGGCAC-TATGTGCCGAATATTGTTACTCTTACCATTACTGATTT
1 TACTGTTACCGTTACCGATTCGGCACTTGTGTGTCGAATATTGTTACTATTACCGTTACCGATTC
81171315 GGCACTTTGTGTGTCGAATATTGT
66 GGCACTTTGTGTGTCGAATATTGT
*
81171339 TACTGTTACCGTTACCGATTTGGCACTTTGTGTGTCGAATATTGTTACTATTACCGTTACCG
1 TACTGTTACCGTTACCGATTCGGCAC-TTGTGTGTCGAATATTGTTACTATTACCGTTACCG
81171401 TTACCGATTC
Statistics
Matches: 133, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
88 80 0.60
90 53 0.40
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.40
Consensus pattern (89 bp):
TACTGTTACCGTTACCGATTCGGCACTTGTGTGTCGAATATTGTTACTATTACCGTTACCGATTC
GGCACTTTGTGTGTCGAATATTGT
Found at i:81171724 original size:54 final size:54
Alignment explanation
Indices: 81171616--81171801 Score: 171
Period size: 54 Copynumber: 3.4 Consensus size: 54
81171606 AAAGGTATAA
* * * * *
81171616 AATAACTGATTATTTCTGAATAATTGA-CTGTTACTGTAT-ATTAGACTGTTACTG
1 AATAACTGACTATTACTGAATAATTGATC-GTTACTGAATAACT-GATTGTTACTG
* * *
81171670 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGTCACTG
1 AATAACTGACTATTACTGAATAATTGATCGTTACTGAATAACTGATTGTTACTG
* * * * * * *
81171724 AATGGA-TGACTGTTACTAAATAACTTAATTGTTACTGAATATCTGATTTTTACTG
1 AAT-AACTGACTATTACTGAATAA-TTGATCGTTACTGAATAACTGATTGTTACTG
*
81171779 AATAACTGACTGTTACTGAATAA
1 AATAACTGACTATTACTGAATAA
81171802 ATAATTGTTC
Statistics
Matches: 108, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
54 60 0.56
55 48 0.44
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (54 bp):
AATAACTGACTATTACTGAATAATTGATCGTTACTGAATAACTGATTGTTACTG
Found at i:81171779 original size:55 final size:54
Alignment explanation
Indices: 81171666--81171814 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
81171656 TTAGACTGTT
* * * * * **
81171666 ACTGAATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGTC
1 ACTGAATAACTGACTGTTACTAAATAAATAATTGTTACTGAATAACTGATTGTC
* * * * *
81171720 ACTGAATGGA-TGACTGTTACTAAATAACTTAATTGTTACTGAATATCTGATTTTT
1 ACTGAAT-AACTGACTGTTACTAAATAA-ATAATTGTTACTGAATAACTGATTGTC
*
81171775 ACTGAATAACTGACTGTTACTGAATAAATAATTGTT-CTGA
1 ACTGAATAACTGACTGTTACTAAATAAATAATTGTTACTGA
81171815 GAGTTAATGA
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.05
54 30 0.38
55 45 0.57
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (54 bp):
ACTGAATAACTGACTGTTACTAAATAAATAATTGTTACTGAATAACTGATTGTC
Found at i:81171810 original size:18 final size:18
Alignment explanation
Indices: 81171616--81171814 Score: 152
Period size: 18 Copynumber: 11.1 Consensus size: 18
81171606 AAAGGTATAA
* *
81171616 AATAACTGATTATTTCTG
1 AATAACTGATTGTTACTG
* *
81171634 AATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* * *
81171652 TAT-ATTAGACTGTTACTG
1 AATAACT-GATTGTTACTG
* *
81171670 AATAACTGAATATTACTG
1 AATAACTGATTGTTACTG
* **
81171688 AATAATTGATCATTACTG
1 AATAACTGATTGTTACTG
*
81171706 AATAACTGATTGTCACTG
1 AATAACTGATTGTTACTG
* * *
81171724 AATGGA-TGACTGTTACTA
1 AAT-AACTGATTGTTACTG
*
81171742 AATAACTTAATTGTTACTG
1 AATAAC-TGATTGTTACTG
* *
81171761 AATATCTGATTTTTACTG
1 AATAACTGATTGTTACTG
*
81171779 AATAACTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
81171797 AATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTG
81171814 A
1 A
81171815 GAGTTAATGA
Statistics
Matches: 143, Mismatches: 33, Indels: 11
0.76 0.18 0.06
Matches are distributed among these distances:
17 8 0.06
18 118 0.83
19 17 0.12
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (18 bp):
AATAACTGATTGTTACTG
Found at i:81176790 original size:45 final size:45
Alignment explanation
Indices: 81176726--81177007 Score: 444
Period size: 45 Copynumber: 6.3 Consensus size: 45
81176716 CTGTTACCGC
* * *
81176726 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTAT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
81176771 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
81176816 TACTGTTACCGTTACCGATTCGGCAC--TGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
81176859 TACTCTTACCATTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
81176904 TACTGTTACCGTTACCGATTTGGCACTTTGTGTGTCAAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
81176949 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTTGGATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
81176994 TACTG-TACTGTTAC
1 TACTGTTACCGTTAC
81177008 TGTTACTGTT
Statistics
Matches: 221, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
43 41 0.19
44 8 0.04
45 172 0.78
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:81176964 original size:133 final size:134
Alignment explanation
Indices: 81176737--81176997 Score: 452
Period size: 133 Copynumber: 1.9 Consensus size: 134
81176727 ACTGCTACTG
*
81176737 TTACCGATTCGGCACTTTGTGTGTCGAATATTATTACTGTTACTGTTACCGATTCGGCACTTTGT
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTATTACTGTTACCGTTACCGATTCGGCACTTTGT
*
81176802 GTGTCGAATATTGTTACTGTTACCGTTACCGATTCGGCAC-TGTGTGTCGAATATTGTTACTCTT
66 GTGTCAAATATTGTTACTGTTACCGTTACCGATTCGGCACTTGTGTGTCGAATATTGTTACTCTT
81176866 ACCA
131 ACCA
* *
81176870 TTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGTTACCGTTACCGATTTGGCACTTTGT
1 TTACCGATTCGGCACTTTGTGTGTCGAATATTATTACTGTTACCGTTACCGATTCGGCACTTTGT
* *
81176935 GTGTCAAATATTGTTACTGTTACCGTTACCGATTCGGCACTTTGTGTGTTGGATATTGTTACT
66 GTGTCAAATATTGTTACTGTTACCGTTACCGATTCGGCAC-TTGTGTGTCGAATATTGTTACT
81176998 GTACTGTTAC
Statistics
Matches: 120, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
133 101 0.84
135 19 0.16
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (134 bp):
TTACCGATTCGGCACTTTGTGTGTCGAATATTATTACTGTTACCGTTACCGATTCGGCACTTTGT
GTGTCAAATATTGTTACTGTTACCGTTACCGATTCGGCACTTGTGTGTCGAATATTGTTACTCTT
ACCA
Found at i:81177251 original size:36 final size:36
Alignment explanation
Indices: 81177196--81177366 Score: 161
Period size: 36 Copynumber: 4.7 Consensus size: 36
81177186 CTGATTATTT
* * *
81177196 CTGAATAATTGACTGTTACTGTAT-ATTAGACTGTTA
1 CTGAATAACTGAATGTTACTGAATAATT-GACTGTTA
* *
81177232 CTGAATAACTGAATATTACTGAATAATTGA-TCATTA
1 CTGAATAACTGAATGTTACTGAATAATTGACT-GTTA
* *
81177268 CTGAATAACTGATTGTCACTGAATGAA-TGACTGTTA
1 CTGAATAACTGAATGTTACTGAAT-AATTGACTGTTA
* * * *
81177304 CTAAATAACTTAATTGTTACTGAAT-ATATGATTTTTA
1 CTGAATAACTGAA-TGTTACTGAATAAT-TGACTGTTA
*
81177341 CTGAATAACTGACTGTTACTGAATAA
1 CTGAATAACTGAATGTTACTGAATAA
81177367 ATAATTGTTC
Statistics
Matches: 109, Mismatches: 18, Indels: 15
0.77 0.13 0.11
Matches are distributed among these distances:
35 2 0.02
36 73 0.67
37 34 0.31
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (36 bp):
CTGAATAACTGAATGTTACTGAATAATTGACTGTTA
Found at i:81177269 original size:54 final size:53
Alignment explanation
Indices: 81177181--81177366 Score: 171
Period size: 54 Copynumber: 3.4 Consensus size: 53
81177171 AAAGGTATAA
* * * *
81177181 AATAACTGATTATTTCTGAATAATTGA-CTGTTACTGTATATTAGACTGTTACTG
1 AATAACTGACTATTACTGAATAATTGATC-GTTACTGAATA-TAGATTGTTACTG
* * *
81177235 AATAACTGAATATTACTGAATAATTGATCATTACTGAATA-ACTGATTGTCACTG
1 AATAACTGACTATTACTGAATAATTGATCGTTACTGAATATA--GATTGTTACTG
* * * * *
81177289 AATGAA-TGACTGTTACTAAATAACTTAATTGTTACTGAATATATGATTTTTACTG
1 AAT-AACTGACTATTACTGAATAA-TTGATCGTTACTGAATATA-GATTGTTACTG
*
81177344 AATAACTGACTGTTACTGAATAA
1 AATAACTGACTATTACTGAATAA
81177367 ATAATTGTTC
Statistics
Matches: 110, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
52 1 0.01
54 62 0.56
55 46 0.42
56 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (53 bp):
AATAACTGACTATTACTGAATAATTGATCGTTACTGAATATAGATTGTTACTG
Found at i:81177344 original size:55 final size:54
Alignment explanation
Indices: 81177231--81177379 Score: 151
Period size: 55 Copynumber: 2.8 Consensus size: 54
81177221 TTAGACTGTT
* * * * * **
81177231 ACTGAATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGTC
1 ACTGAATAACTGACTGTTACTAAATAAATAATTGTTACTGAATAACTGATTGTC
* * *
81177285 ACTGAATGAA-TGACTGTTACTAAATAACTTAATTGTTACTGAATATA-TGATTTTT
1 ACTGAAT-AACTGACTGTTACTAAATAA-ATAATTGTTACTGAATA-ACTGATTGTC
*
81177340 ACTGAATAACTGACTGTTACTGAATAAATAATTGTT-CTGA
1 ACTGAATAACTGACTGTTACTAAATAAATAATTGTTACTGA
81177380 GAGTTAATGA
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
53 4 0.05
54 31 0.38
55 45 0.56
56 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (54 bp):
ACTGAATAACTGACTGTTACTAAATAAATAATTGTTACTGAATAACTGATTGTC
Found at i:81177375 original size:18 final size:18
Alignment explanation
Indices: 81177181--81177379 Score: 132
Period size: 18 Copynumber: 11.1 Consensus size: 18
81177171 AAAGGTATAA
* * *
81177181 AATAACTGATTATTTCTG
1 AATAAATGATTGTTACTG
* *
81177199 AATAATTGACTGTTACTG
1 AATAAATGATTGTTACTG
* * *
81177217 TAT-ATTAGACTGTTACTG
1 AATAAAT-GATTGTTACTG
* * *
81177235 AATAACTGAATATTACTG
1 AATAAATGATTGTTACTG
* **
81177253 AATAATTGATCATTACTG
1 AATAAATGATTGTTACTG
* *
81177271 AATAACTGATTGTCACTG
1 AATAAATGATTGTTACTG
* * *
81177289 AATGAATGACTGTTACTA
1 AATAAATGATTGTTACTG
* *
81177307 AATAACTTAATTGTTACTG
1 AATAA-ATGATTGTTACTG
* *
81177326 AATATATGATTTTTACTG
1 AATAAATGATTGTTACTG
* *
81177344 AATAACTGACTGTTACTG
1 AATAAATGATTGTTACTG
*
81177362 AATAAATAATTGTT-CTG
1 AATAAATGATTGTTACTG
81177379 A
1 A
81177380 GAGTTAATGA
Statistics
Matches: 141, Mismatches: 37, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
17 7 0.05
18 119 0.84
19 15 0.11
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (18 bp):
AATAAATGATTGTTACTG
Found at i:81179984 original size:30 final size:30
Alignment explanation
Indices: 81179950--81180021 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
81179940 GCCATGACAA
** * *
81179950 ACGGGCATGTGGCCTGCTTGTGTGTCTCAC
1 ACGGGCATGTGGCCTGCCCGTATGACTCAC
*
81179980 ACGGGCCTGTGGCCTGCCCGTATGACTCAC
1 ACGGGCATGTGGCCTGCCCGTATGACTCAC
*
81180010 ACGGGCGTGTGG
1 ACGGGCATGTGG
81180022 TTTAGCTGTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.11, C:0.29, G:0.36, T:0.24
Consensus pattern (30 bp):
ACGGGCATGTGGCCTGCCCGTATGACTCAC
Found at i:81180733 original size:174 final size:174
Alignment explanation
Indices: 81180442--81180768 Score: 478
Period size: 174 Copynumber: 1.9 Consensus size: 174
81180432 CTTGGGTTAC
* *
81180442 CATAGTCCAACTATAGCCTTACACCTTATATTCCCCGTGTTTATTGTCCTGGTAGACTACTAGGA
1 CATAGTCCAACTATAGCCTTACACCTTATATTCCCCGTGTTTACTGTCCTGATAGACTACTAGGA
* * *
81180507 TACCATAACATCTTCCAACTATGGTTTTAGTCCTCTCTACCATGATTCCATGGCATCTTTTAGCC
66 TACCATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATGGCATCTTTCAGCC
81180572 ATGATCTTACTCAATTT-AGTCATAGTCCTGTCCACCTGGGTTGT
131 ATGATCTTACTC-ATTTCAGTCATAGTCCTGTCCACCTGGGTTGT
* * **
81180616 CATAGTCCAACTATAGTCTTACACCTTATATTTCTTGTGTTTACTGT-CTCGATAGACTACTAGG
1 CATAGTCCAACTATAGCCTTACACCTTATATTCCCCGTGTTTACTGTCCT-GATAGACTACTAGG
*** * * *
81180680 ATACCATAGTGTCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACTCCATGGCTTCTTTCAGC
65 ATACCATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATGGCATCTTTCAGC
*
81180745 CATGGTCTTACTCATTTCAGTCAT
130 CATGATCTTACTCATTTCAGTCAT
81180769 GATGCCATAG
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
173 6 0.04
174 129 0.96
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (174 bp):
CATAGTCCAACTATAGCCTTACACCTTATATTCCCCGTGTTTACTGTCCTGATAGACTACTAGGA
TACCATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATGGCATCTTTCAGCC
ATGATCTTACTCATTTCAGTCATAGTCCTGTCCACCTGGGTTGT
Found at i:81180770 original size:45 final size:45
Alignment explanation
Indices: 81180736--81180897 Score: 146
Period size: 45 Copynumber: 3.6 Consensus size: 45
81180726 CTCCATGGCT
81180736 TCTTTCAGCCATGGTCTTACTCATTTCAGTCATGATGCCATAGCA
1 TCTTTCAGCCATGGTCTTACTCATTTCAGTCATGATGCCATAGCA
* * * * * * * * **
81180781 TCTTTTAGCTATGGTATTAGTCCTATCTA-CCATGATGCCATGGGG
1 TCTTTCAGCCATGGTCTTACTCATTTC-AGTCATGATGCCATAGCA
* ** * * *
81180826 TATTTCAGCCACAGTCTTTACTCATTTTAGTCATGATGTCATATCA
1 TCTTTCAGCCATGGTC-TTACTCATTTCAGTCATGATGCCATAGCA
*
81180872 TCTTTCAGCTATGGTCTTACTCATTT
1 TCTTTCAGCCATGGTCTTACTCATTT
81180898 TATAGCTTAT
Statistics
Matches: 84, Mismatches: 30, Indels: 6
0.70 0.25 0.05
Matches are distributed among these distances:
45 54 0.64
46 30 0.36
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (45 bp):
TCTTTCAGCCATGGTCTTACTCATTTCAGTCATGATGCCATAGCA
Found at i:81180801 original size:90 final size:91
Alignment explanation
Indices: 81180691--81180886 Score: 261
Period size: 90 Copynumber: 2.2 Consensus size: 91
81180681 TACCATAGTG
* * * * * **
81180691 TCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACT-CCATGGCTTCTTTCAGCCATGGTC-TT
1 TCTTTCAGCTATGGTATTAGTCCTATCTACCATGA-TGCCATGGCGTATTTCAGCCACAGTCTTT
81180754 ACTCATTTCAGTCATGATGCCATAGCA
65 ACTCATTTCAGTCATGATGCCATAGCA
* *
81180781 TCTTTTAGCTATGGTATTAGTCCTATCTACCATGATGCCATGGGGTATTTCAGCCACAGTCTTTA
1 TCTTTCAGCTATGGTATTAGTCCTATCTACCATGATGCCATGGCGTATTTCAGCCACAGTCTTTA
* * *
81180846 CTCATTTTAGTCATGATGTCATATCA
66 CTCATTTCAGTCATGATGCCATAGCA
81180872 TCTTTCAGCTATGGT
1 TCTTTCAGCTATGGT
81180887 CTTACTCATT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
89 1 0.01
90 50 0.55
91 40 0.44
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.39
Consensus pattern (91 bp):
TCTTTCAGCTATGGTATTAGTCCTATCTACCATGATGCCATGGCGTATTTCAGCCACAGTCTTTA
CTCATTTCAGTCATGATGCCATAGCA
Found at i:81181633 original size:15 final size:15
Alignment explanation
Indices: 81181587--81181637 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
81181577 TAAACTTAAA
81181587 AAGACAATGCTGAAG
1 AAGACAATGCTGAAG
81181602 AAGAC--TGACTGAAG
1 AAGACAATG-CTGAAG
*
81181616 AAGACAATGCTCAAG
1 AAGACAATGCTGAAG
81181631 AAGACAA
1 AAGACAA
81181638 AACTTCCTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 2 0.06
14 11 0.34
15 17 0.53
16 2 0.06
ACGTcount: A:0.49, C:0.16, G:0.24, T:0.12
Consensus pattern (15 bp):
AAGACAATGCTGAAG
Found at i:81185302 original size:21 final size:21
Alignment explanation
Indices: 81185277--81185320 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
81185267 CACACCCATA
81185277 TGGAGGCCACACATGCCCGTG
1 TGGAGGCCACACATGCCCGTG
** *
81185298 TGGAGGGGACACATGTCCGTG
1 TGGAGGCCACACATGCCCGTG
81185319 TG
1 TG
81185321 AGTAGCTCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.25, G:0.39, T:0.18
Consensus pattern (21 bp):
TGGAGGCCACACATGCCCGTG
Found at i:81187392 original size:83 final size:83
Alignment explanation
Indices: 81187228--81187393 Score: 206
Period size: 83 Copynumber: 2.0 Consensus size: 83
81187218 TGTGGGTCCA
* * *
81187228 CACGGGCATGTGATATCTGGGCCAAGCCGTGTGGTCCACACGAGCAAGGCTAATCTAGGCATGTG
1 CACGGGCATGTGATATCTGGGCCAAGCCATGTGATCCACACGAGCAAGGCCAATCTAGGCATGTG
81187293 AGCCCACACGGACAAGCC
66 AGCCCACACGGACAAGCC
* * * * * * *
81187311 CACGGGCATGTGATATCTGGTCCAGGCCATGTGATCTACATGGGCAAGGCCAATCTGGGCGTGTG
1 CACGGGCATGTGATATCTGGGCCAAGCCATGTGATCCACACGAGCAAGGCCAATCTAGGCATGTG
* * * *
81187376 GGCCTATACGGGCAAGCC
66 AGCCCACACGGACAAGCC
81187394 ATAATGGCAT
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
83 69 1.00
ACGTcount: A:0.23, C:0.27, G:0.32, T:0.18
Consensus pattern (83 bp):
CACGGGCATGTGATATCTGGGCCAAGCCATGTGATCCACACGAGCAAGGCCAATCTAGGCATGTG
AGCCCACACGGACAAGCC
Found at i:81189110 original size:21 final size:19
Alignment explanation
Indices: 81189073--81189112 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
81189063 GTTTCTTTTT
*
81189073 TAGTAATCTAATATTGCTA
1 TAGTAATATAATATTGCTA
81189092 TAGTATATATAATGATTGCTA
1 TAGTA-ATATAAT-ATTGCTA
81189113 AAGAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.42
Consensus pattern (19 bp):
TAGTAATATAATATTGCTA
Found at i:81205445 original size:18 final size:18
Alignment explanation
Indices: 81205422--81205458 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
81205412 TTCAAAGGTG
81205422 TATGGTAAGTATATTTTC
1 TATGGTAAGTATATTTTC
81205440 TATGGTAAGTATATTTTC
1 TATGGTAAGTATATTTTC
81205458 T
1 T
81205459 GACTATGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.51
Consensus pattern (18 bp):
TATGGTAAGTATATTTTC
Found at i:81209706 original size:70 final size:69
Alignment explanation
Indices: 81209593--81209887 Score: 297
Period size: 70 Copynumber: 4.2 Consensus size: 69
81209583 TGTGGCCTCA
* * *
81209593 TGCTAATTATTTTGGAGGCTGTGGTATTGAACCTGCTAGCCTTAAAATTACAATTGGGAGCTTGA
1 TGCTAACTATTTTGG-GGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAATTGGGAGCTTGA
81209658 GCTCG
65 GCTCG
* * * ** * * *
81209663 TGCTAACTATTTTGGGCGATGCGATACTAAACCTATTAGCCTTAAACTTACAATTGGGAACTTAA
1 TGCTAACTATTTTGGG-GCTGCGATATTGAACCTGCTAGCCTTAAAATTACAATTGGGAGCTTGA
*
81209728 GCTTG
65 GCTCG
** * * * * * *
81209733 CACTAACTATTTCGGGGCTGCGATATTGAACTTGCTATCCTTAAAATTATAGTTGCGAGCTTGAG
1 TGCTAACTATTTTGGGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAATTGGGAGCTTGAG
*
81209798 CTCA
66 CTCG
* * *
81209802 TGCTAACTAATTTGGAGGCTGCGCTATTGAA-CTGGCTAGCCTTAAAATTACAGTTGGGAGCTTG
1 TGCTAACTATTTTGG-GGCTGCGATATTGAACCT-GCTAGCCTTAAAATTACAATTGGGAGCTTG
* *
81209866 AGTTTAG
64 AG-CTCG
81209873 -GCTAACTATTTTGGG
1 TGCTAACTATTTTGGG
81209888 AGGGAATATA
Statistics
Matches: 178, Mismatches: 43, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
69 52 0.29
70 125 0.70
71 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (69 bp):
TGCTAACTATTTTGGGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAATTGGGAGCTTGAG
CTCG
Found at i:81209878 original size:139 final size:140
Alignment explanation
Indices: 81209594--81209883 Score: 318
Period size: 139 Copynumber: 2.1 Consensus size: 140
81209584 GTGGCCTCAT
* * * * *
81209594 GCTAATTATTTTGGAGGCTGTGGTATTGAACCTGCTAGCCTTAAAATTACAATTGGGAGCTTGAG
1 GCTAACTATTTCGGAGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAATTGCGAGCTTGAG
* * * *
81209659 CTCGTGCTAACTATTTTGGGCGATGCGATACTAAACCTATTAGCCTTAAACTTACAATTGGGAAC
66 CTCATGCTAACTAATTTGGGCGATGCGATACTAAACCTACTAGCCTTAAAATTACAATTGGGAAC
81209724 TTAAGCTTGC
131 TTAAGCTTGC
* * * * *
81209734 ACTAACTATTTCGG-GGCTGCGATATTGAACTTGCTATCCTTAAAATTATAGTTGCGAGCTTGAG
1 GCTAACTATTTCGGAGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAATTGCGAGCTTGAG
* * * * * *
81209798 CTCATGCTAACTAATTTGGAG-GCTGCGCTATTGAA-CTGGCTAGCCTTAAAATTACAGTTGGGA
66 CTCATGCTAACTAATTTGG-GCGATGCGATACTAAACCT-ACTAGCCTTAAAATTACAATTGGGA
* * *
81209861 GCTTGAGTTTAG-
129 ACTTAAGCTT-GC
81209873 GCTAACTATTT
1 GCTAACTATTT
81209884 TGGGAGGGAA
Statistics
Matches: 123, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
138 2 0.02
139 108 0.88
140 13 0.11
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (140 bp):
GCTAACTATTTCGGAGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAATTGCGAGCTTGAG
CTCATGCTAACTAATTTGGGCGATGCGATACTAAACCTACTAGCCTTAAAATTACAATTGGGAAC
TTAAGCTTGC
Found at i:81221241 original size:46 final size:46
Alignment explanation
Indices: 81221093--81221305 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 46
81221083 CACTTGTGTG
* * * * *
81221093 AGCTAGTGTAACACATGTCTAGGACATACATCGGCCAC-A-TTATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-A
* * *
81221138 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT-
1 -AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA-TA-TA
81221188 -GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA
* * * * *
81221233 AGCCAGTGTAAGACGTATCTGGGACATGCATCGG-CT--ATGACATG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATATA
* *
81221277 TGTTAGTGTAAGACCATGTCTGGGACATG
1 AGCTAGTGTAAGA-CATGTCTGGGACATG
81221306 GAATCGGCAC
Statistics
Matches: 136, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 15 0.11
45 16 0.12
46 55 0.40
47 27 0.20
48 19 0.14
49 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA
Found at i:81221995 original size:16 final size:16
Alignment explanation
Indices: 81221974--81222005 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81221964 TGTAGGTAAA
*
81221974 GGTGGCAATGAGGCTT
1 GGTGGCAATGAAGCTT
81221990 GGTGGCAATGAAGCTT
1 GGTGGCAATGAAGCTT
81222006 AGTAAATAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.12, G:0.41, T:0.25
Consensus pattern (16 bp):
GGTGGCAATGAAGCTT
Found at i:81227732 original size:40 final size:39
Alignment explanation
Indices: 81227637--81227843 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
81227627 CGGAATACAA
* *
81227637 CCGGATATAACCACATGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
* *
81227676 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* *
81227716 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
81227756 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
81227796 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
81227836 CCGGATAT
1 CCGGATAT
81227844 CATTCAATTG
Statistics
Matches: 141, Mismatches: 23, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 25 0.18
40 114 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:81235701 original size:40 final size:39
Alignment explanation
Indices: 81235656--81235863 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
81235646 CGGAATACAA
*
81235656 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
81235696 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
81235736 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
81235776 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
81235816 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
81235856 CCGGATAT
1 CCGGATAT
81235864 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:81235796 original size:80 final size:81
Alignment explanation
Indices: 81235656--81235861 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
81235646 CGGAATACAA
* * *
81235656 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
81235720 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
81235736 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
81235799 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
81235816 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
81235862 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:81241217 original size:2 final size:2
Alignment explanation
Indices: 81241210--81241237 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
81241200 ATATGCAATC
81241210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81241238 TGATTCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81242492 original size:21 final size:21
Alignment explanation
Indices: 81242446--81242493 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
81242436 TATTAATGAT
* *
81242446 TTGACTCCACTATTCATGTAC
1 TTGACACCACTATTCATGGAC
81242467 TTGACACCACTATTCATAGGAC
1 TTGACACCACTATTCAT-GGAC
81242489 -TGACA
1 TTGACA
81242494 TTCTGAACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.31
Consensus pattern (21 bp):
TTGACACCACTATTCATGGAC
Found at i:81247414 original size:4 final size:4
Alignment explanation
Indices: 81247405--81247462 Score: 63
Period size: 4 Copynumber: 15.5 Consensus size: 4
81247395 ATAGAAAGGT
*
81247405 AATA AATA AATA AATA AAT- AAT- AAT- AAT- AATA AAGGA AA-A AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AA-TA AATA AATA
81247449 AATA AATA AATA AA
1 AATA AATA AATA AA
81247463 GATGCACAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
3 15 0.30
4 32 0.64
5 3 0.06
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:81247474 original size:40 final size:38
Alignment explanation
Indices: 81247405--81247482 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 38
81247395 ATAGAAAGGT
*
81247405 AATAAATAAATAAATAAATAATAATAATAATAAAGGAAAA
1 AATAAATAAATAAATAAATAATAACAATAA-AAA-GAAAA
* *
81247445 AATAAATAAATAAATAAA-GATGCACAATAAAAAGAAAA
1 AATAAATAAATAAATAAATAAT-AACAATAAAAAGAAAA
81247483 TACAAAAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 5 0.15
39 5 0.15
40 24 0.71
ACGTcount: A:0.72, C:0.03, G:0.06, T:0.19
Consensus pattern (38 bp):
AATAAATAAATAAATAAATAATAACAATAAAAAGAAAA
Found at i:81248498 original size:2 final size:2
Alignment explanation
Indices: 81248491--81248520 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
81248481 CCATTTTACA
81248491 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81248521 GTTTTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81249114 original size:89 final size:88
Alignment explanation
Indices: 81248959--81249721 Score: 455
Period size: 89 Copynumber: 8.4 Consensus size: 88
81248949 GGAATTGCTG
* * * * * * * * * * *
81248959 CTTCAATCTGCCCCACTACAACTTCAAGGATATAAGGTTTATAGCTGTAATCTACTCTACTCCAA
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAA-GATTGTAGCTTTAATCTACTCCACTGCAA
81249024 CTTCAGAGAGATAAGATTTGCTAT
65 CTTCAGAGAGATAAGATTTGCTAT
* * * * * *
81249048 CTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTAGCTATAATCTGCTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGA-TTGTAGCTTTAATCTACTCCACTGCAA
* * * * *
81249113 CTTTAGGGAGATGAGACTCG-TAT
65 CTTCAGAGAGATAAGATTTGCTAT
* * * * * ** *
81249136 CTTCAATTTGCTCCACTGTAATTTTAGGGAGATAAGATTAGTCA-CTTCAGCCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATT-GT-AGCTTTAATCTACTCCACTGCA
* * *
81249200 ACTCCAGGGAGATAGGATTTGCTAT
64 ACTTCAGAGAGATAAGATTTGCTAT
* * * * * * * *
81249225 CTTCAATCTGCTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTAATCTACTACAA
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAA-GATTGTAGCTTTAATCTACTCCACTGCAA
81249290 CTTCAGAGAGATAAGATTTGCTAT
65 CTTCAGAGAGATAAGATTTGCTAT
* * * * * *
81249314 CTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAGACTTGTA-ATTTCAACCTATTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGA-TTGTAGCTTT-AATCTACTCCACTGCA
* * * *
81249378 ACTTTA-AGGAGATAAGGTTT-ATAG
64 ACTTCAGA-GAGATAAGATTTGCTAT
* * * * * *
81249402 CTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTTAATCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATT--GTAGCTTTAATCTACTCCACTGCA
* *
81249467 ACTTCA-AGAAGATAAGATTTGTGGTTTGTAG
64 ACTTCAGAG-AGATAAGA-TT-T-G---CTAT
* * * * * *
81249498 CTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGA-TTG-TAGCTTTAATCTACTCCACTGCA
*
81249563 ACTTCA-AGGAGATAAGATTTGTAACTTGTAG
64 ACTTCAGA-GAGATAAGATTTG---C---TAT
* ** * * * * * * * * *
81249594 CTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCGTTATCTTCAATCTACTCTATTGTA
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATT-G-TAGCTTTAATCTACTCCACTGCA
* *
81249659 ACTTTAGAGAGAAAAGATTTG-TGA-
64 ACTTCAGAGAGATAAGATTTGCT-AT
* **
81249683 CTTTAATCTTTTCCACTGCAACTTTAGGGAGATAAGATT
1 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATT
81249722 CACCATGATA
Statistics
Matches: 537, Mismatches: 108, Indels: 58
0.76 0.15 0.08
Matches are distributed among these distances:
87 4 0.01
88 108 0.20
89 258 0.48
90 9 0.02
91 1 0.00
93 2 0.00
94 1 0.00
95 4 0.01
96 146 0.27
97 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (88 bp):
CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTGTAGCTTTAATCTACTCCACTGCAAC
TTCAGAGAGATAAGATTTGCTAT
Found at i:81249115 original size:44 final size:44
Alignment explanation
Indices: 81248958--81249815 Score: 459
Period size: 44 Copynumber: 18.9 Consensus size: 44
81248948 AGGAATTGCT
* * * * * *
81248958 GCTTCAATCTGCCCCACTACAACTTCAAGGATATAAGGTTTATA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * *
81249002 GCTGT-AATCTACTCTACTCCAACTTCAGAGAGATAAGATTTGCTA
1 GCT-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * *
81249047 TCTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * *
81249091 GCTAT-AATCTGCTCCACTGCAACTTTAGGGAGATGAGACTCGTA
1 GCT-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * * *
81249135 TCTTCAATTTGCTCCACTGTAATTTTAGGGAGATAAGATTAGTCA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A
** * *
81249180 -CTTCAGCCTGCTCCACTGCAACTCCAGGGAGATAGGATTTGCTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * *
81249224 TCTTCAATCTGCTCCACTGCAACTTTAGAGAGATAAGGTTTATA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * ** * * *
81249268 GCTTTAATTTAATCTACTACAACTTCAGAGAGATAAGATTTGCTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * ** *
81249313 TCTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAGACTTGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
** * ** * * * *
81249357 ATTTCAACCTATTCCACTGCAACTTTAAGGAGATAAGGTTTATA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * * **
81249401 GCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTA
* * * *
81249446 TCTTTAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTTGTGGTTTGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-------TTTGTA
* ** * *
81249497 GCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* *
81249542 TCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA----T---TTGTA
* * * * * *
81249593 GCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCGTTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * * * *
81249638 TCTTCAATCTACTCTATTGTAACTTTAGAGAGAAAAGATTTGT-
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* ** *
81249681 GACTTTAATCTTTTCCACTGCAACTTTAGGGAGATAAGATTCACCATGATA
1 G-CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TA
* * * * * * *
81249732 ACTTCGATCCG-TCCCACTGTAACTTTAGGG-GTATAGGATTTGTG
1 GCTTCAATCTGCT-CCACTGCAACTTCAGGGAG-ATAAGATTTGTA
* * * *
81249776 GCTTTAATCTGCTCTACTGTAACTTCAGGGAAATAAGATT
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
81249816 CACCATGATT
Statistics
Matches: 619, Mismatches: 157, Indels: 76
0.73 0.18 0.09
Matches are distributed among these distances:
43 1 0.00
44 306 0.49
45 205 0.33
47 1 0.00
49 5 0.01
50 30 0.05
51 66 0.11
52 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
Found at i:81249277 original size:133 final size:133
Alignment explanation
Indices: 81248960--81249488 Score: 485
Period size: 133 Copynumber: 4.0 Consensus size: 133
81248950 GAATTGCTGC
* * * * * * *
81248960 TTCAATCTGCCCCACTACAACTTCA-AGGATATAAGGTTTATAGCTGTAATCTACTCTACTCCAA
1 TTCAATCTGCTCCACTGCAACTTTAGA-GAGATAAGGTTTATAGCTTTAATTTACTCTACTGCAA
* * ** * * * *
81249024 CTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTG
65 CTTTAGAGAGATAAGATTAGCTATCTTCAGCCTACTCCACTGCAACTCCAGGGAGATAAGACTTG
*
81249089 TAGCT
130 TA-AT
* * * ** ** * * * * * *
81249094 AT-AATCTGCTCCACTGCAACTTTAGGGAGATGAGACTCGTATCTTCAATTTGCTCCACTGTAAT
1 TTCAATCTGCTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTACTCTACTGCAAC
* * * *
81249158 TTTAGGGAGATAAGATTAG-TCA-CTTCAGCCTGCTCCACTGCAACTCCAGGGAGATAGGATTTG
66 TTTAGAGAGATAAGATTAGCT-ATCTTCAGCCTACTCCACTGCAACTCCAGGGAGATAAGACTTG
81249221 CT-AT
130 -TAAT
* *
81249225 CTTCAATCTGCTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTAATCTACTACAA
1 -TTCAATCTGCTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTACTCTACTGCAA
* * * * *
81249290 CTTCAGAGAGATAAGATTTGCTATCTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAGACTTG
65 CTTTAGAGAGATAAGATTAGCTATCTTCAGCCTACTCCACTGCAACTCCAGGGAGATAAGACTTG
81249355 TAAT
130 TAAT
* ** *
81249359 TTCAACCTATTCCACTGCAACTTTA-AGGAGATAAGGTTTATAGCTTTAATCTACTCTACTGCAA
1 TTCAATCTGCTCCACTGCAACTTTAGA-GAGATAAGGTTTATAGCTTTAATTTACTCTACTGCAA
* * ** * * * * *
81249423 CTTTAGAGAGATAAGATTAACTATCTTTAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTTG
65 CTTTAGAGAGATAAGATTAGCTATCTTCAGCCTACTCCACTGCAACTCCAGGGAGATAAGACTTG
81249488 T
130 T
81249489 GGTTTGTAGC
Statistics
Matches: 313, Mismatches: 73, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
131 1 0.00
132 35 0.11
133 238 0.76
134 39 0.12
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (133 bp):
TTCAATCTGCTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTACTCTACTGCAAC
TTTAGAGAGATAAGATTAGCTATCTTCAGCCTACTCCACTGCAACTCCAGGGAGATAAGACTTGT
AAT
Found at i:81249436 original size:266 final size:265
Alignment explanation
Indices: 81248946--81249441 Score: 645
Period size: 266 Copynumber: 1.9 Consensus size: 265
81248936 ACTGCAACTT
*
81248946 ATAGGAATTGCTGCTTCAATCTGCCCCACTACAACTTCAAGGATATAAGGTTTATAGCTGTAATC
1 ATAGGAATTGCTGCTTCAATCTGCCCCACTACAACTTCAAGGAGATAAGGTTTATAGCTGTAATC
* * * *
81249011 TACTCTACTCCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCATTGTAACTTCAGG
66 TAATCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAGG
* * * * * * * *
81249076 GAGATTAGACTTGTAGCTATAATCTGCTCCACTGCAACTTTAGGGAGATGAGACTCGTATCTTCA
131 GAGATAAGACTTGTAGATATAACCTACTCCACTGCAACTTTAAGGAGATAAGACTCATAGCTTCA
* * * * *
81249141 ATTTGCTCCACTGTAATTTTAGGGAGATAAGATTAGTCACTTCAGCCTGCTCCACTGCAACTCCA
196 ATCTACTCCACTGCAACTTTAGAGAGATAAGATTAGTCACTTCAGCCTGCTCCACTGCAACTCCA
81249206 GGGAG
261 GGGAG
* * * * * *
81249211 ATAGGATTTGCTATCTTCAATCTGCTCCACTGCAACTT-TAGAGAGATAAGGTTTATAGCTTTAA
1 ATAGGAATTGCT-GCTTCAATCTGCCCCACTACAACTTCAAG-GAGATAAGGTTTATAGCTGTAA
* * *
81249275 TTTAATCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTATTCCACTGCAACTTCA
64 TCTAATCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCA
* * ** *
81249340 GGGAGATAAGACTTGTA-ATTTCAACCTATTCCACTGCAACTTTAAGGAGATAAGGTTTATAGCT
129 GGGAGATAAGACTTGTAGATAT-AACCTACTCCACTGCAACTTTAAGGAGATAAGACTCATAGCT
* *
81249404 TTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTA
193 TCAATCTACTCCACTGCAACTTTAGAGAGATAAGATTA
81249442 ACTATCTTTA
Statistics
Matches: 194, Mismatches: 34, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
265 15 0.08
266 179 0.92
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (265 bp):
ATAGGAATTGCTGCTTCAATCTGCCCCACTACAACTTCAAGGAGATAAGGTTTATAGCTGTAATC
TAATCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAGG
GAGATAAGACTTGTAGATATAACCTACTCCACTGCAACTTTAAGGAGATAAGACTCATAGCTTCA
ATCTACTCCACTGCAACTTTAGAGAGATAAGATTAGTCACTTCAGCCTGCTCCACTGCAACTCCA
GGGAG
Found at i:81249533 original size:51 final size:49
Alignment explanation
Indices: 81249447--81249632 Score: 175
Period size: 51 Copynumber: 3.8 Consensus size: 49
81249437 GATTAACTAT
*
81249447 CTTTAATCTGCTCCACTGCAACTTCA-AGAAGATAAGATTTGTGGTTTGTAG
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTTGT-G-TTGTAG
** * * *
81249498 CTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGA-TT-TG--CTAT
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGTGTTGTAG
* * * *
81249543 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAG
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGT--GTTGTAG
* * *
81249594 CTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATT
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATT
81249633 CGTTATCTTC
Statistics
Matches: 107, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
45 33 0.31
46 2 0.02
47 1 0.01
48 1 0.01
49 1 0.01
50 2 0.02
51 64 0.60
52 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (49 bp):
CTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGTGTTGTAG
Found at i:81249533 original size:96 final size:96
Alignment explanation
Indices: 81249393--81249721 Score: 359
Period size: 96 Copynumber: 3.5 Consensus size: 96
81249383 AAGGAGATAA
* * * * * * *
81249393 GGTTTATAGCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTTAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAGCTATCTTCAATCTGC
81249458 TCCACTGCAACTTCAAGAAGATAAGATTTGT
66 TCCACTGCAACTTCAAGAAGATAAGATTTGT
*
81249489 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAGCTATCTTCAATCTGC
*
81249554 TCCACTGCAACTTCAAGGAGATAAGATTTGT
66 TCCACTGCAACTTCAAGAAGATAAGATTTGT
*** * * * * * * *
81249585 AACTTGTAGCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCGTTATCTTCAATCTAC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAGCTATCTTCAATCTGC
* * * * *
81249650 TCTATTGTAACTT-TAGAGAGAAAAGA-TT-T
66 TCCACTGCAACTTCAAGA-AGATAAGATTTGT
* *
81249679 -G--TG-A-CTTTAATCTTTTCCACTGCAACTTTAGGGAGATAAGATT
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATT
81249722 CACCATGATA
Statistics
Matches: 201, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
89 34 0.17
90 1 0.00
91 2 0.01
94 1 0.00
95 4 0.02
96 159 0.79
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (96 bp):
GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAGCTATCTTCAATCTGC
TCCACTGCAACTTCAAGAAGATAAGATTTGT
Found at i:81251224 original size:71 final size:71
Alignment explanation
Indices: 81251138--81251300 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
81251128 CGATTTGTCT
81251138 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81251203 CTTTCA
66 CTTTCA
81251209 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
81251274 CTTTCA
66 CTTTCA
81251280 CGTAGCTC-CTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
81251301 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 13 0.14
71 79 0.86
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:81252717 original size:94 final size:93
Alignment explanation
Indices: 81252593--81252836 Score: 346
Period size: 94 Copynumber: 2.6 Consensus size: 93
81252583 GGTTGTCACA
* * *
81252593 ATGATAACTTCGATCTGTCTCACTGTAACTTCAGGGTTATAGGATTTGTGGCTTTAATCTGCTCC
1 ATGATAACTTCGAACTGTCCCACTGTAACTTCAGGG-TATAGGATTTGTGGCTTTAATATGCTCC
*
81252658 ACTGCAACTTCAGGGAGATAAGATTCGCT
65 ACTGCAACTTCAGGGAGATAAGATTCGCC
** *
81252687 ATGATAACTTCGAACTGTCCCACTACAACTTCAGGGGTATATGATTTGTGGCTTTAATATGCTCC
1 ATGATAACTTCGAACTGTCCCACTGTAACTTCA-GGGTATAGGATTTGTGGCTTTAATATGCTCC
* *
81252752 ATTGCAACTTTAGGGAGATAAGATTCGCC
65 ACTGCAACTTCAGGGAGATAAGATTCGCC
* *
81252781 ATGATAACTT-TAATTCGTCCCACTGTAACTTCAGAGGTATAGGATTTGTGGCTTTA
1 ATGATAACTTCGAACT-GTCCCACTGTAACTTCAG-GGTATAGGATTTGTGGCTTTA
81252837 CTGATCTGTT
Statistics
Matches: 133, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
93 4 0.03
94 126 0.95
95 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (93 bp):
ATGATAACTTCGAACTGTCCCACTGTAACTTCAGGGTATAGGATTTGTGGCTTTAATATGCTCCA
CTGCAACTTCAGGGAGATAAGATTCGCC
Found at i:81253694 original size:14 final size:14
Alignment explanation
Indices: 81253677--81253718 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
81253667 CTCTCCATTT
81253677 TTTTCTCTTTTTTC
1 TTTTCTCTTTTTTC
81253691 TTTTCT-TTGTTTTC
1 TTTTCTCTT-TTTTC
*
81253705 TTTCTTTCTTTTTT
1 TTT-TCTCTTTTTT
81253719 TTTAGGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 2 0.08
14 14 0.58
15 6 0.25
16 2 0.08
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (14 bp):
TTTTCTCTTTTTTC
Found at i:81263817 original size:42 final size:42
Alignment explanation
Indices: 81263717--81263881 Score: 143
Period size: 42 Copynumber: 4.1 Consensus size: 42
81263707 GCAAATTGAA
81263717 AAACGCCGCAAAAGG-TA-AAGC-ATAAGTGG--TGTTTTCTCAT
1 AAACGCCGCAAAAGGTTAGAA-CAAT-AGTGGCAT-TTTTCTCAT
* * *
81263757 AAACGCCGTAAAAAGTTAGAACAACAGTGGCATTTTTCTCAT
1 AAACGCCGCAAAAGGTTAGAACAATAGTGGCATTTTTCTCAT
** * * *
81263799 GGACG-CGACAAAAGGTTAGAACTATAGCGACA-TTTTCTCAT
1 AAACGCCG-CAAAAGGTTAGAACAATAGTGGCATTTTTCTCAT
*
81263840 AAACGCCGCAAAAGG-TA-AGCAATAGTGGCATTTTT-TCAT
1 AAACGCCGCAAAAGGTTAGAACAATAGTGGCATTTTTCTCAT
81263879 AAA
1 AAA
81263882 TGCCATGAAT
Statistics
Matches: 100, Mismatches: 17, Indels: 17
0.75 0.13 0.13
Matches are distributed among these distances:
39 16 0.16
40 19 0.19
41 29 0.29
42 35 0.35
43 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (42 bp):
AAACGCCGCAAAAGGTTAGAACAATAGTGGCATTTTTCTCAT
Found at i:81263876 original size:41 final size:42
Alignment explanation
Indices: 81263717--81263876 Score: 106
Period size: 41 Copynumber: 3.9 Consensus size: 42
81263707 GCAAATTGAA
*
81263717 AAACGCCG-CAAAAGGTAAAGC-ATAAGTGG--TGTTTTCTCAT
1 AAACGCCGACAAAAGGT-AAGCAAT-AGTGGCATTTTTTCTCAT
* * *
81263757 AAACGCCGTA-AAAAGTTAGAACAACAGTGGCA-TTTTTCTCAT
1 AAACGCCG-ACAAAAGGTA-AGCAATAGTGGCATTTTTTCTCAT
** * * **
81263799 GGACG-CGACAAAAGGTTAG-AACTA-TAGCGACATTTTCTCAT
1 AAACGCCGACAAAAGGTAAGCAA-TAGTGGC-ATTTTTTCTCAT
81263840 AAACGCCG-CAAAAGGTAAGCAATAGTGGCATTTTTTC
1 AAACGCCGACAAAAGGTAAGCAATAGTGGCATTTTTTC
81263877 ATAAATGCCA
Statistics
Matches: 89, Mismatches: 18, Indels: 25
0.67 0.14 0.19
Matches are distributed among these distances:
39 5 0.06
40 13 0.15
41 51 0.57
42 20 0.22
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (42 bp):
AAACGCCGACAAAAGGTAAGCAATAGTGGCATTTTTTCTCAT
Found at i:81264087 original size:73 final size:73
Alignment explanation
Indices: 81263970--81264234 Score: 284
Period size: 73 Copynumber: 3.6 Consensus size: 73
81263960 AGTTTTCCCG
* * * * *
81263970 AAATCCCTACGTTCTTTTCCCAAATCCCTTTCTTTCTTCCCCAATTTCTTTTCCCCAAATCAATT
1 AAATCCCTAAG-T-TTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTT
81264035 CCCCTCCCTA
64 CCCCTCCCTA
* * *
81264045 AAATCCCCAAGTTTTTCCTCTAAT-CCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTTA
1 AAATCCCTAAGTTTTTCC-CAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTTC
*
81264109 CCCTCCCCA
65 CCCTCCCTA
* * * * *
81264118 TAATCCCTAAGCTTTTTGCCAAATCCCTTTC-TTTTTTCCCAACTTCTTTTACCCAAATCAGTTC
1 AAATCCCTAAG-TTTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTTC
* *
81264182 TCCT-CCTCG
65 CCCTCCCT-A
* * *
81264191 AAATCCCTAACTTTTTCCCCAAATCCCCTCCTTTTTTCCCCAAT
1 AAATCCCTAAGTTTTT-CCCAAATCCCTTCCTTTTTTTCCCAAT
81264235 GTTTGTTGCA
Statistics
Matches: 157, Mismatches: 27, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
72 7 0.04
73 115 0.73
74 26 0.17
75 9 0.06
ACGTcount: A:0.20, C:0.38, G:0.03, T:0.39
Consensus pattern (73 bp):
AAATCCCTAAGTTTTTCCCAAATCCCTTCCTTTTTTTCCCAATTTCTTTTCCCCAAATCAGTTCC
CCTCCCTA
Found at i:81264466 original size:17 final size:17
Alignment explanation
Indices: 81264433--81264469 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
81264423 AATTCTGGTA
*
81264433 ATTTTTTATTTCATTTT
1 ATTTTTTATATCATTTT
81264450 ATTTTTTATATC-TTTT
1 ATTTTTTATATCATTTT
81264466 -TTTT
1 ATTTT
81264470 AAATTTCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 4 0.21
16 4 0.21
17 11 0.58
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (17 bp):
ATTTTTTATATCATTTT
Found at i:81268132 original size:19 final size:17
Alignment explanation
Indices: 81268112--81268173 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
81268102 ATTTTTATAT
*
81268112 TTTTTAATAACTTTTAAA
1 TTTTTAA-AAATTTTAAA
* *
81268130 TTTTAAAAAAATTTTATA
1 TTTT-TAAAAATTTTAAA
*
81268148 TTTTTAAAATTTTTAAA
1 TTTTTAAAAATTTTAAA
*
81268165 TTTTGAAAA
1 TTTTTAAAA
81268174 TTAAATAATT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
17 18 0.50
18 16 0.44
19 2 0.06
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
TTTTTAAAAATTTTAAA
Found at i:81277625 original size:3 final size:3
Alignment explanation
Indices: 81277617--81277649 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
81277607 AAAATGGTTC
81277617 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
81277650 GATGATGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:81277654 original size:3 final size:3
Alignment explanation
Indices: 81277648--81277685 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
81277638 AATAATAATA
81277648 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
81277686 AACAATAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:81277959 original size:21 final size:20
Alignment explanation
Indices: 81277935--81277975 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
81277925 TAAAATTTCA
*
81277935 GAATTATAAAAGGATATAAAT
1 GAATAATAAAAGGATA-AAAT
*
81277956 GAATAATAAAATGATAAAAT
1 GAATAATAAAAGGATAAAAT
81277976 CACATAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (20 bp):
GAATAATAAAAGGATAAAAT
Found at i:81277982 original size:21 final size:21
Alignment explanation
Indices: 81277940--81277982 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
81277930 TTTCAGAATT
*
81277940 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATATAAATCAATA
*
81277961 ATAAAATGATA-AAATCACATA
1 ATAAAAGGATATAAATCA-ATA
81277982 A
1 A
81277983 AATAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.63, C:0.05, G:0.09, T:0.23
Consensus pattern (21 bp):
ATAAAAGGATATAAATCAATA
Found at i:81278001 original size:11 final size:11
Alignment explanation
Indices: 81277985--81278009 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81277975 TCACATAAAA
81277985 TAAATATTAGG
1 TAAATATTAGG
81277996 TAAATATTAGG
1 TAAATATTAGG
81278007 TAA
1 TAA
81278010 TTAAACACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:81279212 original size:8 final size:8
Alignment explanation
Indices: 81279199--81279224 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
81279189 GGGGCTAAGG
81279199 TTTCACCA
1 TTTCACCA
81279207 TTTCACCA
1 TTTCACCA
81279215 TTTCACCA
1 TTTCACCA
81279223 TT
1 TT
81279225 CAACCACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.35, G:0.00, T:0.42
Consensus pattern (8 bp):
TTTCACCA
Found at i:81280793 original size:30 final size:29
Alignment explanation
Indices: 81280699--81280800 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
81280689 TATAGTGAAT
* * *
81280699 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
81280728 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
81280756 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
81280786 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
81280801 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:81288722 original size:29 final size:29
Alignment explanation
Indices: 81288689--81288820 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
81288679 GTGACGAGAT
*
81288689 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
81288718 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
81288747 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
81288776 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
81288805 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81288821 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:81291938 original size:30 final size:29
Alignment explanation
Indices: 81291844--81291945 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
81291834 TATAGTGAAT
* * *
81291844 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
81291873 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
81291901 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
81291931 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
81291946 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:81294261 original size:22 final size:21
Alignment explanation
Indices: 81294230--81294276 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
81294220 TATTTGGACT
81294230 GTTTTAA-TTTAGATCTTATTTG
1 GTTTTAATTTTA-ATC-TATTTG
*
81294252 GTTTTCATTTTAATCTATTTG
1 GTTTTAATTTTAATCTATTTG
81294273 GTTT
1 GTTT
81294277 ATTTATTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 10 0.43
22 9 0.39
23 4 0.17
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.62
Consensus pattern (21 bp):
GTTTTAATTTTAATCTATTTG
Found at i:81294285 original size:13 final size:13
Alignment explanation
Indices: 81294267--81294297 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
81294257 CATTTTAATC
*
81294267 TATTTGGTTTATT
1 TATTTGGCTTATT
81294280 TATTTGGCTTATT
1 TATTTGGCTTATT
81294293 TATTT
1 TATTT
81294298 ATTGTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.03, G:0.13, T:0.68
Consensus pattern (13 bp):
TATTTGGCTTATT
Found at i:81295909 original size:42 final size:43
Alignment explanation
Indices: 81295857--81295942 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
81295847 TTGTAAGTTA
81295857 GAACACGATC-TTTTTTTAACTCTCGAGAATATTTAAAATTTT
1 GAACACGATCTTTTTTTTAACTCTCGAGAATATTTAAAATTTT
*
81295899 GAACACGATCTTTTTTTTTAACTCTTGAGAATATTTAAAATTTT
1 GAACACGATC-TTTTTTTTAACTCTCGAGAATATTTAAAATTTT
81295943 TACTTTAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 10 0.24
44 31 0.76
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (43 bp):
GAACACGATCTTTTTTTTAACTCTCGAGAATATTTAAAATTTT
Found at i:81296210 original size:27 final size:27
Alignment explanation
Indices: 81296179--81296231 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
81296169 ATATAAGATA
81296179 AAAAATAAACAAGCCAAAAA-TAAAAAAG
1 AAAAAT-AACAAG-CAAAAACTAAAAAAG
*
81296207 AAAAATAACAAGTAAAAACTAAAAA
1 AAAAATAACAAGCAAAAACTAAAAA
81296232 TTTGAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 12 0.52
28 6 0.26
ACGTcount: A:0.75, C:0.09, G:0.06, T:0.09
Consensus pattern (27 bp):
AAAAATAACAAGCAAAAACTAAAAAAG
Found at i:81296223 original size:13 final size:13
Alignment explanation
Indices: 81296179--81296229 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 13
81296169 ATATAAGATA
81296179 AAAAATAAACAAG
1 AAAAATAAACAAG
*
81296192 CCAAAAATAAAAAAG
1 --AAAAATAAACAAG
81296207 AAAAAT-AACAAG
1 AAAAATAAACAAG
81296219 TAAAAACTAAA
1 -AAAAA-TAAA
81296230 AATTTGAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 5 0.16
13 11 0.35
14 1 0.03
15 14 0.45
ACGTcount: A:0.75, C:0.10, G:0.06, T:0.10
Consensus pattern (13 bp):
AAAAATAAACAAG
Found at i:81296676 original size:3 final size:3
Alignment explanation
Indices: 81296670--81296720 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
81296660 AATAATAATA
81296670 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT-
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
81296717 ATG A
1 ATG A
81296721 CAAAACAACA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:81296886 original size:3 final size:3
Alignment explanation
Indices: 81296860--81296962 Score: 113
Period size: 3 Copynumber: 34.0 Consensus size: 3
81296850 ATGTAATTTG
81296860 TAA TAA -AA TATA TACA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* **
81296907 CAA TAA TAA TAA TAA TAA TAA TAA TAA TTG TAA -AA TTAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
*
81296952 TGA T-A TAA TAA
1 TAA TAA TAA TAA
81296963 AATTTTAAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
2 6 0.07
3 70 0.81
4 9 0.10
5 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:81297007 original size:21 final size:20
Alignment explanation
Indices: 81296978--81297018 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
81296968 TAAAATTTCA
*
81296978 GAATTATAAAAGGATATAAAT
1 GAATAATAAAAGGATA-AAAT
81296999 GAATAATAAAAGGATAAAAT
1 GAATAATAAAAGGATAAAAT
81297019 CACATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.61, C:0.00, G:0.15, T:0.24
Consensus pattern (20 bp):
GAATAATAAAAGGATAAAAT
Found at i:81297025 original size:21 final size:21
Alignment explanation
Indices: 81296983--81297025 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
81296973 TTTCAGAATT
*
81296983 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATATAAATCAATA
81297004 ATAAAAGGATA-AAATCACATA
1 ATAAAAGGATATAAATCA-ATA
81297025 A
1 A
81297026 AATAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.63, C:0.05, G:0.12, T:0.21
Consensus pattern (21 bp):
ATAAAAGGATATAAATCAATA
Found at i:81300889 original size:40 final size:39
Alignment explanation
Indices: 81300729--81300891 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
81300719 TGTGTATGAA
*
81300729 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
81300768 TGTGCGAGTTGTGATATCCGGGCTAAGCCAGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81300807 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
81300846 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
81300886 TGTGCG
1 TGTGCG
81300892 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81300907 original size:40 final size:40
Alignment explanation
Indices: 81300746--81300927 Score: 154
Period size: 39 Copynumber: 4.6 Consensus size: 40
81300736 ATTGTGATAT
* *** *
81300746 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * * ** *
81300785 CCGGGCTAAG-CCAGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
81300824 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
81300863 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
81300903 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81300928 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
39 79 0.64
40 45 0.36
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:81308813 original size:40 final size:39
Alignment explanation
Indices: 81308653--81308815 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
81308643 TGTGTATGAA
*
81308653 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
81308692 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81308731 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
81308770 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
81308810 TGTGCG
1 TGTGCG
81308816 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81308831 original size:40 final size:39
Alignment explanation
Indices: 81308653--81308846 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
81308643 TGTGTATGAA
* *
81308653 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
81308692 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
81308731 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
81308770 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
81308810 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
81308847 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:81320274 original size:26 final size:26
Alignment explanation
Indices: 81320238--81320288 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
81320228 GCAAGCTTCG
81320238 ATAGCCACTATAAAACACAGAAAAGA
1 ATAGCCACTATAAAACACAGAAAAGA
81320264 ATAGCCACTATAAAACACAGAAAAG
1 ATAGCCACTATAAAACACAGAAAAG
81320289 TAAATAGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.57, C:0.20, G:0.12, T:0.12
Consensus pattern (26 bp):
ATAGCCACTATAAAACACAGAAAAGA
Found at i:81326607 original size:93 final size:96
Alignment explanation
Indices: 81326444--81326708 Score: 265
Period size: 93 Copynumber: 2.8 Consensus size: 96
81326434 TACAATGTCG
* * * * *
81326444 ATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATCTAAGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACA-GGTCTTACACTGGCACACATATCTAAGCCGATGCCATGTCCCAGACA
*
81326509 GGTCTTACACT-GACTTTCATATATC-ATGACTC
65 GGTCTTACACTAG-CTTGCATATATCGA-GACTC
* *
81326541 ATGCCATGTCCCAGACAGGTCTTACACT-G-ACACATGTC-AAGCCGATGCCATGTCCCAGATAG
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCACACATATCTAAGCCGATGCCATGTCCCAGACAG
* * *
81326603 GTCTTACACTAGCTTGCATATCTCGAGGCTG
66 GTCTTACACTAGCTTGCATATATCGAGACTC
* * * * * ***
81326634 ATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCT-TAATATTGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCACACATATCTAA-GCCGATGCCATGTCCCAGACA
81326697 CGGTCTTACACT
65 -GGTCTTACACT
81326709 GGCTCTCATA
Statistics
Matches: 142, Mismatches: 19, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
92 23 0.16
93 49 0.35
94 16 0.11
95 18 0.13
96 21 0.15
97 15 0.11
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (96 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGGCACACATATCTAAGCCGATGCCATGTCCCAGACAG
GTCTTACACTAGCTTGCATATATCGAGACTC
Found at i:81326655 original size:48 final size:47
Alignment explanation
Indices: 81326443--81326757 Score: 211
Period size: 48 Copynumber: 6.7 Consensus size: 47
81326433 ATACAATGTC
* * * * * *
81326443 GATGCCATGTTCCAAACATGGTCTTACATTGGC-TCACATATCTAAG-T
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCTTCATATATC-AGGCT
*
81326490 CGATGCCATGTCCCAGACAGGTCTTACACT-GACTTTCATATATCATGACT
1 -GATGCCATGTCCCAGACAGGTCTTACACTAG-C-TTCATATATCA-GGCT
* * * * * *
81326540 CATGCCATGTCCCAGACAGGTCTTACACT-G--ACACATGTCAAGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTCATATATCAGGCT
* *
81326584 GATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTCGAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTT-CATATATC-AGGCT
* * * ***
81326633 GATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCT-TAATATT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCT-TCATATATCAGGCT
* **
81326679 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCATA-ATGTGGCT
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCT-TCATATATCAGGCT
* *
81326727 GATGCACA--TCCCAGACATGTATTACACTAGC
1 GATGC-CATGTCCCAGACAGGTCTTACACTAGC
81326758 ACACATCCAT
Statistics
Matches: 214, Mismatches: 38, Indels: 32
0.75 0.13 0.11
Matches are distributed among these distances:
44 28 0.13
45 8 0.04
46 18 0.08
47 34 0.16
48 78 0.36
49 47 0.22
50 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTCATATATCAGGCT
Found at i:81326741 original size:94 final size:95
Alignment explanation
Indices: 81326491--81326757 Score: 246
Period size: 93 Copynumber: 2.8 Consensus size: 95
81326481 TATCTAAGTC
* * *
81326491 GATGCCATGTCCCAGACAGGTCTTACACT-GACTTTCATATATC-ATGACTCATGC-CATGTCCC
1 GATGCCATGTCCCAGACAGGTCTTACACTAG-CTTGCATATATCGA-GGCTGATGCACA--TCCC
* * * * * * ***
81326553 AGACAGGTCTTACACT-G-ACACATGTCAA-GCC
62 AGACATGTATTACACTAGCTCTCATCTTAATATT
* * **
81326584 GATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTCGAGGCTGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCTGATGCACATCCCAGAC
*
81326649 ATGTCTTACACTAGCTCTCATCTTAATATT
66 ATGTATTACACTAGCTCTCATCTTAATATT
* *
81326679 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCT-CATA-AT-GTGGCTGATGCACATCCCAG
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCT-TGCATATATCGAGGCTGATGCACATCCCAG
81326741 ACATGTATTACACTAGC
64 ACATGTATTACACTAGC
81326758 ACACATCCAT
Statistics
Matches: 144, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
92 19 0.13
93 46 0.32
94 42 0.29
95 18 0.12
96 18 0.12
97 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCTGATGCACATCCCAGAC
ATGTATTACACTAGCTCTCATCTTAATATT
Found at i:81327448 original size:20 final size:20
Alignment explanation
Indices: 81327423--81327461 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
81327413 AAAATTTCAA
81327423 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
81327443 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
81327462 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:81331161 original size:18 final size:18
Alignment explanation
Indices: 81331125--81331169 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
81331115 CAATTGGGTG
81331125 TGTGGG-CCACACAAGCA
1 TGTGGGCCCACACAAGCA
* *
81331142 TGTGGGCCCAGACGAGCA
1 TGTGGGCCCACACAAGCA
*
81331160 TGTTGGCCCA
1 TGTGGGCCCA
81331170 TTATGCTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.22, C:0.29, G:0.33, T:0.16
Consensus pattern (18 bp):
TGTGGGCCCACACAAGCA
Found at i:81341022 original size:223 final size:222
Alignment explanation
Indices: 81340619--81341050 Score: 740
Period size: 223 Copynumber: 1.9 Consensus size: 222
81340609 TAAAGACTTG
* * *
81340619 TTAAATCCCTACAAATTTAATTTTATTCTCTTATTTAAGATTAAGCTGCAATCATTAAGTTTAAT
1 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
81340684 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
66 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
* * * *
81340749 TCAATAGGTCTTTTAAATAGGTTGTAACATGGCTAGGCTAGGGGTAGGTAAAAGATAGATAAATT
131 CCAATAGGTCTTTTAAATAGGTTGTAACATGACCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
81340814 TAGGCTAAAAACCCAATTTAATTTTAT
196 TAGGCTAAAAACCCAATTTAATTTTAT
81340841 TTAAATCCCTAAAAATATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATC-TTAAGTTTA
1 TTAAATCCCT-AAAA-ATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTA
* *
81340905 ATTTATGCCTTCATATGTTGAACATTGCAATTTCTCTCCACTAGTGTAGGTAGCACAAAAACTTG
64 ATTTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTG
* *
81340970 AACCAATAGGTCTTTTAAATAGGTTGTAGCATGACCAAGTTAGGGGTAGGTAAAAGATAGATAAA
129 AACCAATAGGTCTTTTAAATAGGTTGTAACATGACCAAGCTAGGGGTAGGTAAAAGATAGATAAA
81341035 TTTAGGCTAAAAACCC
194 TTTAGGCTAAAAACCC
81341051 TAGACTCAGC
Statistics
Matches: 197, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
222 10 0.05
223 150 0.76
224 37 0.19
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (222 bp):
TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
CCAATAGGTCTTTTAAATAGGTTGTAACATGACCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
TAGGCTAAAAACCCAATTTAATTTTAT
Found at i:81342835 original size:18 final size:18
Alignment explanation
Indices: 81342814--81342851 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
81342804 CGAAATTGTA
81342814 AGTTCTTCGAGAATTTTT
1 AGTTCTTCGAGAATTTTT
81342832 AGTTCTTCGAGAATTTTT
1 AGTTCTTCGAGAATTTTT
81342850 AG
1 AG
81342852 CACTTTCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (18 bp):
AGTTCTTCGAGAATTTTT
Found at i:81343573 original size:30 final size:30
Alignment explanation
Indices: 81343538--81343595 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
81343528 TAGACACTTC
*
81343538 CACACGGGT-GATCCACACGCCCGTGTGTGA
1 CACACGAGTAGAT-CACACGCCCGTGTGTGA
* *
81343568 CACACGAGTAGATCACATGCCTGTGTGT
1 CACACGAGTAGATCACACGCCCGTGTGT
81343596 CATGCCGCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (30 bp):
CACACGAGTAGATCACACGCCCGTGTGTGA
Found at i:81344760 original size:17 final size:19
Alignment explanation
Indices: 81344740--81344777 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
81344730 ATTTTATTGC
81344740 AATTT-ACTTTT-TTTTTT
1 AATTTGACTTTTCTTTTTT
*
81344757 AATTTGATTTTTCTTTTTT
1 AATTTGACTTTTCTTTTTT
81344776 AA
1 AA
81344778 ATTTTCTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 5 0.28
19 8 0.44
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (19 bp):
AATTTGACTTTTCTTTTTT
Found at i:81344970 original size:34 final size:34
Alignment explanation
Indices: 81344927--81344995 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
81344917 AGAAGAATGG
81344927 TACGAGGACGATATTCACACCACAACCGAGGAGA
1 TACGAGGACGATATTCACACCACAACCGAGGAGA
81344961 TACGAGGACGATATTCACACCACAACCGAGGAGA
1 TACGAGGACGATATTCACACCACAACCGAGGAGA
81344995 T
1 T
81344996 GGCTAAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.26, G:0.23, T:0.13
Consensus pattern (34 bp):
TACGAGGACGATATTCACACCACAACCGAGGAGA
Found at i:81348213 original size:14 final size:14
Alignment explanation
Indices: 81348194--81348243 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
81348184 ACCAATTCAT
*
81348194 TCATACCCTTTCGA
1 TCATACCATTTCGA
*
81348208 TCATACCAATTC-A
1 TCATACCATTTCGA
*
81348221 TTCATACCATTTCGT
1 -TCATACCATTTCGA
81348236 TCATACCA
1 TCATACCA
81348244 CTCTTACCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 1 0.03
14 29 0.97
ACGTcount: A:0.28, C:0.32, G:0.04, T:0.36
Consensus pattern (14 bp):
TCATACCATTTCGA
Found at i:81348224 original size:28 final size:28
Alignment explanation
Indices: 81348184--81348243 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
81348174 ACCTAAACCG
*
81348184 ACCAATTCATTCATACCCTTTCGATCAT
1 ACCAATTCATTCATACCATTTCGATCAT
*
81348212 ACCAATTCATTCATACCATTTCGTTCAT
1 ACCAATTCATTCATACCATTTCGATCAT
81348240 ACCA
1 ACCA
81348244 CTCTTACCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.30, C:0.32, G:0.03, T:0.35
Consensus pattern (28 bp):
ACCAATTCATTCATACCATTTCGATCAT
Found at i:81355196 original size:28 final size:28
Alignment explanation
Indices: 81355156--81355215 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
81355146 ACCTAAACCG
*
81355156 ACCAATTCATTCATACCCCTTCGATCAT
1 ACCAATTCATTCATACCACTTCGATCAT
* *
81355184 ACCAATTCATTCATACCATTTCGTTCAT
1 ACCAATTCATTCATACCACTTCGATCAT
81355212 ACCA
1 ACCA
81355216 CTCTTACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (28 bp):
ACCAATTCATTCATACCACTTCGATCAT
Found at i:81355197 original size:14 final size:14
Alignment explanation
Indices: 81355156--81355215 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
81355146 ACCTAAACCG
81355156 ACCAATTCATTCAT
1 ACCAATTCATTCAT
**
81355170 ACCCCTTCGA-TCAT
1 ACCAATTC-ATTCAT
81355184 ACCAATTCATTCAT
1 ACCAATTCATTCAT
* *
81355198 ACCATTTCGTTCAT
1 ACCAATTCATTCAT
81355212 ACCA
1 ACCA
81355216 CTCTTACCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
13 1 0.03
14 36 0.95
15 1 0.03
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (14 bp):
ACCAATTCATTCAT
Found at i:81358458 original size:93 final size:93
Alignment explanation
Indices: 81358347--81358517 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81358337 CCCATAAGTG
*
81358347 AACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81358411 CAAGCTCGGATGCCTAGTTACATCTCTCA
65 CAAGCTCGGATGCCTAGTTACATCTCTCA
* *
81358440 AACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
* *
81358505 GAGTTCGGATGCC
66 AAGCTCGGATGCC
81358518 CAAATATCCT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
AAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:81358508 original size:46 final size:46
Alignment explanation
Indices: 81358338--81358513 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 46
81358328 TGTAACCCGC
*
81358338 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* *
81358384 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
81358434 CTC-TCA---AACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
81358477 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81358514 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
45 2 0.02
46 60 0.56
47 25 0.23
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81361712 original size:40 final size:39
Alignment explanation
Indices: 81361547--81361730 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
81361537 AAATTGAATG
* * *
81361547 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
81361587 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
81361627 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
81361667 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
81361706 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
81361731 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:81361755 original size:80 final size:81
Alignment explanation
Indices: 81361587--81361775 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
81361577 GCTGGAAATT
* * * *
81361587 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
81361652 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
81361668 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
81361731 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
81361747 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
81361776 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:81369016 original size:40 final size:39
Alignment explanation
Indices: 81368851--81369034 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
81368841 AAATTGAATG
* * *
81368851 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
81368891 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
81368931 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
81368971 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
81369010 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
81369035 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:81369059 original size:80 final size:81
Alignment explanation
Indices: 81368891--81369079 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
81368881 GCTGGAAATT
* * * *
81368891 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
81368956 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
81368972 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
81369035 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
81369051 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
81369080 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:81373723 original size:45 final size:44
Alignment explanation
Indices: 81373659--81373832 Score: 186
Period size: 45 Copynumber: 3.8 Consensus size: 44
81373649 TGTAACCCGC
*
81373659 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGAT
* * *
81373704 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGAT
* *** * * *
81373750 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCG-AT
*
81373797 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
81373833 ATGCCTAAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
45 37 0.35
46 36 0.34
47 33 0.31
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGAT
Found at i:81373774 original size:92 final size:93
Alignment explanation
Indices: 81373667--81373839 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
81373657 GCCCATAAGT
* * * *
81373667 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCG-CTCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
81373731 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
81373759 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
*
81373824 CGAGTTCGGATGCCTA
66 CGAGCTCGGATGCCTA
81373840 AATATCCTAG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
92 31 0.42
93 43 0.58
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:81373852 original size:46 final size:46
Alignment explanation
Indices: 81373709--81373852 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
81373699 TCGCTCCATA
* * *
81373709 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--AATATC-CT
* * * ***
81373758 --CGAACTCAGACTCAACTCAACGAGTTCGGA--CATTCGTATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAAATATCC-T
81373801 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAAATATCCT
81373848 AGTGA
1 AGTGA
81373853 TATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
45 2 0.03
46 33 0.44
47 28 0.37
48 7 0.09
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAAATATCCT
Found at i:81391156 original size:27 final size:27
Alignment explanation
Indices: 81391119--81391180 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
81391109 GAAAAAATTA
* *
81391119 TTATAAATTAATTA-AAATTAAATATT
1 TTATAATTTAAGTACAAATTAAATATT
* *
81391145 TTAATAATTTAAGTACAATTTAATTATT
1 TT-ATAATTTAAGTACAAATTAAATATT
81391173 TTATAATT
1 TTATAATT
81391181 ATATTATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.07
27 16 0.53
28 12 0.40
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
TTATAATTTAAGTACAAATTAAATATT
Found at i:81392282 original size:37 final size:35
Alignment explanation
Indices: 81392204--81392295 Score: 96
Period size: 37 Copynumber: 2.5 Consensus size: 35
81392194 TTAAATTTAA
81392204 TATTAAAATAATCACTTGAATATTAAATTAATAAAATAC
1 TATTAAAATAAT-A-TT-AA-ATTAAATTAATAAAATAC
* *
81392243 TATTAAGATAAGTATTAAATTAAATTTAATATTAA-AC
1 TATTAAAATAA-TATTAAATTAAA-TTAATA-AAATAC
81392280 TATTAAAATAATATTA
1 TATTAAAATAATATTA
81392296 TTGTTGAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
36 11 0.23
37 20 0.43
38 4 0.09
39 11 0.23
40 1 0.02
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.39
Consensus pattern (35 bp):
TATTAAAATAATATTAAATTAAATTAATAAAATAC
Found at i:81401837 original size:40 final size:39
Alignment explanation
Indices: 81401766--81401971 Score: 180
Period size: 40 Copynumber: 5.2 Consensus size: 39
81401756 ATTGAATGAC
* * *
81401766 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTAT
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGC-AAGTAATTAT
* * * ** *
81401806 ATCCGGGTTAAGACCCGAAGGCCATTGTGCTAGTGACCAC
1 ATCCGGGCTAAGACCCGAAGG-CATTGTGCAAGTAATTAT
** *
81401846 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATTAT
* ** *
81401886 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTAATTAT
* **
81401926 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATTAT
81401966 ATCCGG
1 ATCCGG
81401972 TTGTATTCCA
Statistics
Matches: 137, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 7 0.05
40 126 0.92
41 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAATTAT
Found at i:81401902 original size:80 final size:81
Alignment explanation
Indices: 81401764--81401971 Score: 235
Period size: 80 Copynumber: 2.6 Consensus size: 81
81401754 CAATTGAATG
* * ** * *
81401764 ACATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTATATCCGGGTTAAGACCCGAAGGC
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTAGTTATATCCGGGCTAAGACCCGAAGG-
*
81401828 CA-TTGTGCTAGT-GACC
64 CATTTGTGCAAGTCGACC
* * *
81401844 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCA
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
**
81401909 TTTGTGCAAGTCGTTC
66 TTTGTGCAAGTCGACC
* * *
81401925 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
81401972 TTGTATTCCA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 4 0.04
80 103 0.94
81 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (81 bp):
ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCAAGTCGACC
Found at i:81405119 original size:11 final size:11
Alignment explanation
Indices: 81405103--81405146 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
81405093 TTATATGGCA
81405103 AATAGCATGGT
1 AATAGCATGGT
*
81405114 AATAGCATCAGT
1 AATAGCAT-GGT
81405126 -ATGAGCATGGT
1 AAT-AGCATGGT
81405137 AATAGCATGG
1 AATAGCATGG
81405147 GGCGTTCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.25
Consensus pattern (11 bp):
AATAGCATGGT
Found at i:81405241 original size:20 final size:20
Alignment explanation
Indices: 81405216--81405255 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
81405206 AATAATTAGT
81405216 AGAAAAATGA-AAATAATATG
1 AGAAAAATGAGAAA-AATATG
81405236 AGAAAAATGAGAAAAATATG
1 AGAAAAATGAGAAAAATATG
81405256 TATCAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.65, C:0.00, G:0.17, T:0.17
Consensus pattern (20 bp):
AGAAAAATGAGAAAAATATG
Found at i:81405479 original size:27 final size:27
Alignment explanation
Indices: 81405449--81405500 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
81405439 ATGAGGAAGG
*
81405449 GGTAGGATAAAGA-AAAGAGGAAGAAAA
1 GGTAGGAGAAAGAGAAA-AGGAAGAAAA
81405476 GGTAGGAGAAAGAGAAAAGGAAGAA
1 GGTAGGAGAAAGAGAAAAGGAAGAA
81405501 GAAAGGAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.58, C:0.00, G:0.37, T:0.06
Consensus pattern (27 bp):
GGTAGGAGAAAGAGAAAAGGAAGAAAA
Found at i:81405493 original size:18 final size:18
Alignment explanation
Indices: 81405470--81405505 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81405460 GAAAAGAGGA
* *
81405470 AGAAAAGGTAGGAGAAAG
1 AGAAAAGGAAGAAGAAAG
81405488 AGAAAAGGAAGAAGAAAG
1 AGAAAAGGAAGAAGAAAG
81405506 GAGAGTTGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.36, T:0.03
Consensus pattern (18 bp):
AGAAAAGGAAGAAGAAAG
Found at i:81406596 original size:20 final size:20
Alignment explanation
Indices: 81406571--81406613 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
81406561 AAAGAAGGTT
*
81406571 GTACCACATTATCAGTATTA
1 GTACCACATGATCAGTATTA
*
81406591 GTACCACATGATTAGTATTA
1 GTACCACATGATCAGTATTA
81406611 GTA
1 GTA
81406614 GTATGATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (20 bp):
GTACCACATGATCAGTATTA
Found at i:81412042 original size:31 final size:29
Alignment explanation
Indices: 81412007--81412072 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
81411997 AACTCACACT
* *
81412007 TGGTACCTATACTTTTATAAAATGTCCAATG
1 TGGTACCTATAC-TCT-GAAAATGTCCAATG
** *
81412038 TGGTATTTTTACTCTGAAAATGTCCAATG
1 TGGTACCTATACTCTGAAAATGTCCAATG
81412067 TGGTAC
1 TGGTAC
81412073 ATGCACTTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
29 18 0.62
30 2 0.07
31 9 0.31
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (29 bp):
TGGTACCTATACTCTGAAAATGTCCAATG
Done.