Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 273 of 328
Found at i:81754398 original size:32 final size:33
Alignment explanation
Indices: 81754344--81754410 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 33
81754334 TGATATATAA
81754344 AATATTTTTAAAAAAATAAATATAATAATAAAT
1 AATATTTTTAAAAAAATAAATATAATAATAAAT
* * * * *
81754377 AATA-TTTTAAATAATTTAATATAATGATATAT
1 AATATTTTTAAAAAAATAAATATAATAATAAAT
81754409 AA
1 AA
81754411 AATATAATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 25 0.86
33 4 0.14
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (33 bp):
AATATTTTTAAAAAAATAAATATAATAATAAAT
Found at i:81754856 original size:15 final size:15
Alignment explanation
Indices: 81754822--81754870 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
81754812 ATTTAAAATT
81754822 TTAAAAATATA-AAGA
1 TTAAAAATATATAA-A
*
81754837 CTAAAAATA-ATCAAA
1 TTAAAAATATAT-AAA
81754852 TT-AAAATATATAAA
1 TTAAAAATATATAAA
81754866 TTAAA
1 TTAAA
81754871 TCTGCACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 12 0.43
15 14 0.50
16 2 0.07
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (15 bp):
TTAAAAATATATAAA
Found at i:81765957 original size:76 final size:76
Alignment explanation
Indices: 81765831--81765982 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
81765821 TAGGTGTAGT
81765831 TAGTAGCTTAATTTTGACAAGAAATAAAACAAAAAGAAAAGGGATGTCATCTTTTCATCTTTCTT
1 TAGTAGCTTAATTTTGACAAGAAATAAAACAAAAAGAAAAGGGATGTCATCTTTTCATCTTTCTT
81765896 CCTTCCTCCAC
66 CCTTCCTCCAC
81765907 TAGTAGCTTAATTTTGACAAGAAATAAAACAAAAAGAAAAGGGATGTCATCTTTTCATCTTTCTT
1 TAGTAGCTTAATTTTGACAAGAAATAAAACAAAAAGAAAAGGGATGTCATCTTTTCATCTTTCTT
81765972 CCTTCCTCCAC
66 CCTTCCTCCAC
81765983 AAAAAATACC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.33
Consensus pattern (76 bp):
TAGTAGCTTAATTTTGACAAGAAATAAAACAAAAAGAAAAGGGATGTCATCTTTTCATCTTTCTT
CCTTCCTCCAC
Found at i:81766311 original size:20 final size:19
Alignment explanation
Indices: 81766275--81766325 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
81766265 AAAGGATTTT
*
81766275 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
81766294 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
81766314 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
81766326 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:81770805 original size:67 final size:65
Alignment explanation
Indices: 81770654--81770806 Score: 191
Period size: 67 Copynumber: 2.3 Consensus size: 65
81770644 CATCATGTGT
* * * * *
81770654 ACAAGAGAGCTACGAGACATTTGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
1 ACAAGAGAGCTACGAG--ATATGATGTAGCTAGGTCGCATGCGTGATACCATGAGGACACCATGT
81770719 AG
64 AG
* *
81770721 ACAAGAGAGCTACGAGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGATATGATGTAGCTAGGTCGCATGCGTGATACCA--TG-AGGACACCATG
81770785 TAG
63 TAG
81770788 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
81770807 AACTGGCTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
64 24 0.32
65 3 0.04
66 2 0.03
67 47 0.62
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGAGATATGATGTAGCTAGGTCGCATGCGTGATACCATGAGGACACCATGTAG
Found at i:81774412 original size:7 final size:7
Alignment explanation
Indices: 81774393--81774447 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
81774383 TCTAGTTTTG
81774393 GGGTTTA
1 GGGTTTA
* *
81774400 GAGTTTG
1 GGGTTTA
*
81774407 GGGTTTG
1 GGGTTTA
81774414 GGGTTTA
1 GGGTTTA
*
81774421 GTGTTT-
1 GGGTTTA
81774427 GTGGTTTA
1 G-GGTTTA
81774435 GGGTTTA
1 GGGTTTA
81774442 GGGTTT
1 GGGTTT
81774448 TAAGGCTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 1 0.03
7 38 0.95
8 1 0.03
ACGTcount: A:0.09, C:0.00, G:0.44, T:0.47
Consensus pattern (7 bp):
GGGTTTA
Found at i:81774413 original size:21 final size:21
Alignment explanation
Indices: 81774389--81774447 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
81774379 GGTGTCTAGT
81774389 TTTGGGGTTTAGAGTTTGGGG
1 TTTGGGGTTTAGAGTTTGGGG
* *
81774410 TTTGGGGTTTAGTGTTTGTGG
1 TTTGGGGTTTAGAGTTTGGGG
* *
81774431 TTTAGGGTTTAGGGTTT
1 TTTGGGGTTTAGAGTTT
81774448 TAAGGCTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.08, C:0.00, G:0.42, T:0.49
Consensus pattern (21 bp):
TTTGGGGTTTAGAGTTTGGGG
Found at i:81774510 original size:15 final size:15
Alignment explanation
Indices: 81774490--81774521 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81774480 TTTAATTTAA
81774490 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
81774505 AAGATAAATATATAT
1 AAGATAAATATAAAT
81774520 AA
1 AA
81774522 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:81775719 original size:37 final size:37
Alignment explanation
Indices: 81775661--81775897 Score: 316
Period size: 37 Copynumber: 6.5 Consensus size: 37
81775651 TTCCCCAAAT
* *
81775661 CCTTCGCCCCGTGCATTGCAACCCATCTCTTCCATCG
1 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCG
** * *
81775698 CCTTTACCCCGTGCATCGCAACCCA--TCCTCCGTCA
1 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCG
* *
81775733 CCTTCGCCCCGTGGATCGCAACCCATCCCCTCCATCG
1 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCG
81775770 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCG
1 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCG
** *
81775807 CCTTTTCCCCGTGCATCGCAACTCATCTCCTCCATCG
1 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCG
* * *
81775844 CCTTCGCCTCGTGCATCACAACCCATCTCCTCCATTG
1 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCG
* *
81775881 CCTTCGCCTCGTACATC
1 CCTTCGCCCCGTGCATC
81775898 TACTGTATAG
Statistics
Matches: 174, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
35 29 0.17
37 145 0.83
ACGTcount: A:0.14, C:0.48, G:0.13, T:0.25
Consensus pattern (37 bp):
CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCG
Found at i:81775817 original size:109 final size:110
Alignment explanation
Indices: 81775661--81775897 Score: 341
Period size: 109 Copynumber: 2.2 Consensus size: 110
81775651 TTCCCCAAAT
* *
81775661 CCTTCGCCCCGTGCATTGCAACCCATCTCTTCCATCGCCTTTACCCCGTGCATCGCAACCCA-TC
1 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCGCCTTTACCCCGTGCATCGCAACCCACTC
* * *
81775725 CTCCGTCACCTTCGCCCCGTGGATCGCAACCCATCCCCTCCATCG
66 CTCCATCACCTTCGCCCCGTGCATCACAACCCATCCCCTCCATCG
* *
81775770 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCGCCTTTTCCCCGTGCATCGCAACTCATCT
1 CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCGCCTTTACCCCGTGCATCGCAACCCA-CT
* * * *
81775835 CCTCCATCGCCTTCGCCTCGTGCATCACAACCCATCTCCTCCATTG
65 CCTCCATCACCTTCGCCCCGTGCATCACAACCCATCCCCTCCATCG
* *
81775881 CCTTCGCCTCGTACATC
1 CCTTCGCCCCGTGCATC
81775898 TACTGTATAG
Statistics
Matches: 113, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
109 58 0.51
111 55 0.49
ACGTcount: A:0.14, C:0.48, G:0.13, T:0.25
Consensus pattern (110 bp):
CCTTCGCCCCGTGCATCGCAACCCATCTCCTCCATCGCCTTTACCCCGTGCATCGCAACCCACTC
CTCCATCACCTTCGCCCCGTGCATCACAACCCATCCCCTCCATCG
Found at i:81775844 original size:19 final size:19
Alignment explanation
Indices: 81775783--81775844 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
81775773 TCGCCCCGTG
*
81775783 CATCGCAACCCATCTCCTC
1 CATCGCAACTCATCTCCTC
** * *
81775802 CATCGC--CTTTTCCCCGTG
1 CATCGCAACTCATCTCC-TC
81775820 CATCGCAACTCATCTCCTC
1 CATCGCAACTCATCTCCTC
81775839 CATCGC
1 CATCGC
81775845 CTTCGCCTCG
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
17 5 0.16
18 7 0.23
19 13 0.42
20 6 0.19
ACGTcount: A:0.16, C:0.48, G:0.10, T:0.26
Consensus pattern (19 bp):
CATCGCAACTCATCTCCTC
Found at i:81776299 original size:28 final size:28
Alignment explanation
Indices: 81776267--81776323 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
81776257 AGTAAGTTTT
81776267 TTACTTAAGTACTTTTACATTTATGTTC
1 TTACTTAAGTACTTTTACATTTATGTTC
81776295 TTACTTAAGTACTTTTACATTTATGTTC
1 TTACTTAAGTACTTTTACATTTATGTTC
81776323 T
1 T
81776324 GTGTATTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.54
Consensus pattern (28 bp):
TTACTTAAGTACTTTTACATTTATGTTC
Found at i:81778245 original size:27 final size:27
Alignment explanation
Indices: 81778214--81778322 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
81778204 ATCTTAATGT
81778214 TAAATATATATCATATAATAACTTACA
1 TAAATATATATCATATAATAACTTACA
*
81778241 TAAATATATATCATATCATAACTTACA
1 TAAATATATATCATATAATAACTTACA
* *
81778268 TAACT-TATATACCT-TACATAA--TACA
1 TAAATATATAT-CATATA-ATAACTTACA
*
81778293 TAAATATATATCATAAAATAACTTACA
1 TAAATATATATCATATAATAACTTACA
81778320 TAA
1 TAA
81778323 CTTACATAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
25 14 0.20
26 12 0.17
27 43 0.62
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (27 bp):
TAAATATATATCATATAATAACTTACA
Found at i:81778269 original size:9 final size:9
Alignment explanation
Indices: 81778257--81778417 Score: 84
Period size: 9 Copynumber: 18.1 Consensus size: 9
81778247 TATATCATAT
81778257 CATAACTTA
1 CATAACTTA
81778266 CATAACTTA
1 CATAACTTA
* *
81778275 TATACCTTA
1 CATAACTTA
81778284 CATAA--TA
1 CATAACTTA
*
81778291 CATAA-ATA
1 CATAACTTA
* * *
81778299 TATATCATAA
1 CATAAC-TTA
*
81778309 AATAACTTA
1 CATAACTTA
81778318 CATAACTTA
1 CATAACTTA
*
81778327 CATAAATGT-
1 CATAACT-TA
* *
81778336 -ATATCATA
1 CATAACTTA
81778344 TCATAACTTA
1 -CATAACTTA
*
81778354 CATACCTTA
1 CATAACTTA
*
81778363 CATAAATGT-
1 CATAACT-TA
* *
81778372 -ATATCATA
1 CATAACTTA
81778380 TCATAACTTA
1 -CATAACTTA
81778390 CATAACTTA
1 CATAACTTA
*
81778399 CAAAACTTA
1 CATAACTTA
*
81778408 CTTAACTTA
1 CATAACTTA
81778417 C
1 C
81778418 GTAATACATA
Statistics
Matches: 112, Mismatches: 29, Indels: 22
0.69 0.18 0.13
Matches are distributed among these distances:
7 9 0.08
8 11 0.10
9 73 0.65
10 19 0.17
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:81778333 original size:36 final size:36
Alignment explanation
Indices: 81778280--81778400 Score: 192
Period size: 36 Copynumber: 3.4 Consensus size: 36
81778270 ACTTATATAC
* **
81778280 CTTACATAA--TACATAAATATATATCATAAAATAA
1 CTTACATAACTTACATAAATGTATATCATATCATAA
81778314 CTTACATAACTTACATAAATGTATATCATATCATAA
1 CTTACATAACTTACATAAATGTATATCATATCATAA
*
81778350 CTTACATACCTTACATAAATGTATATCATATCATAA
1 CTTACATAACTTACATAAATGTATATCATATCATAA
81778386 CTTACATAACTTACA
1 CTTACATAACTTACA
81778401 AAACTTACTT
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
34 9 0.11
36 71 0.89
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.35
Consensus pattern (36 bp):
CTTACATAACTTACATAAATGTATATCATATCATAA
Found at i:81778349 original size:79 final size:79
Alignment explanation
Indices: 81778214--81778367 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 79
81778204 ATCTTAATGT
* * * * *
81778214 TAAATATATATCATATAATAACTTACATAAATATATATCATATCATAACTTACATAACTTATATA
1 TAAATATATATCATAAAATAACTTACATAAATATACATCAAATCATAACATACATAACTTACATA
81778279 CCTTACATAATACA
66 CCTTACATAATACA
* * *
81778293 TAAATATATATCATAAAATAACTTACATAACT-TACAT-AAATGTATATCATATCATAACTTACA
1 TAAATATATATCATAAAATAACTTACATAAATATACATCAAAT-CATAACATA-CATAACTTACA
81778356 TACCTTACATAA
64 TACCTTACATAA
81778368 ATGTATATCA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
77 3 0.05
78 10 0.15
79 52 0.80
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.36
Consensus pattern (79 bp):
TAAATATATATCATAAAATAACTTACATAAATATACATCAAATCATAACATACATAACTTACATA
CCTTACATAATACA
Found at i:81781891 original size:48 final size:48
Alignment explanation
Indices: 81781820--81782125 Score: 420
Period size: 48 Copynumber: 6.6 Consensus size: 48
81781810 TGTTACAACA
* *
81781820 TTCACATTAGCCATTCGGCTTTACCACATATACATATAGCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATATCATATATAT
* *
81781868 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATATCATATATAT
*
81781916 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATATCATATATAT
*
81781962 TTCACATTAGCCA--------TACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATATCATATATAT
* *
81782002 TTCACATTAGCCATTCGACTTTACCACATATACATATCA-CACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT-ATCATATATAT
*
81782050 TTCACATTAGCCATTCGGCTTTACCACATATACATATCA-CACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT-ATCATATATAT
*
81782098 TTCACATTAGCCATTCGGCTTCACCACA
1 TTCACATTAGCCATTCGGCTTTACCACA
81782126 CATATATAAA
Statistics
Matches: 238, Mismatches: 9, Indels: 22
0.88 0.03 0.08
Matches are distributed among these distances:
38 19 0.08
40 19 0.08
46 19 0.08
48 181 0.76
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATATCATATATAT
Found at i:81782024 original size:134 final size:135
Alignment explanation
Indices: 81781841--81782111 Score: 454
Period size: 134 Copynumber: 2.0 Consensus size: 135
81781831 CATTCGGCTT
* *
81781841 TACCACATATACATATAGCATACATATTTCACATTCGCCATTCGGCTTTACCACATATACATATC
1 TACCACATATACATATAGCATACATATTTCACATTAGCCATTCGACTTTACCACATATACATATC
* * *
81781906 TCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT-CTCATATATTTCACATT
66 ACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATACACATATATTTCACATT
81781970 AGCCA
131 AGCCA
** *
81781975 TACCACATATACATATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATACATATC
1 TACCACATATACATATAGCATACATATTTCACATTAGCCATTCGACTTTACCACATATACATATC
81782040 ACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACAT
66 ACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT-ACACATATATTTCACAT
81782105 TAGCCA
130 TAGCCA
81782111 T
1 T
81782112 TCGGCTTCAC
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
134 105 0.83
136 22 0.17
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (135 bp):
TACCACATATACATATAGCATACATATTTCACATTAGCCATTCGACTTTACCACATATACATATC
ACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATACACATATATTTCACATT
AGCCA
Found at i:81792547 original size:13 final size:14
Alignment explanation
Indices: 81792531--81792559 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81792521 TTTTAAATAT
81792531 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
81792544 TTATAATGGTTTAA
1 TTATAATGGTTTAA
81792558 TT
1 TT
81792560 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:81793409 original size:43 final size:42
Alignment explanation
Indices: 81793309--81793492 Score: 145
Period size: 43 Copynumber: 4.3 Consensus size: 42
81793299 AATATATATT
* ** * *
81793309 TTTAGCGGCGTTTAAGATAAAAGCGCCACTAAAGGTCGA-GTTC
1 TTTAGCGGCATTTGTGA-AAAAGCGCCGCTAAAAGTC-ACGTTC
** * *
81793352 TTTAGTAGCGTTTGTGCAAAAAGTGCCGCTAAAAGTCACGTTC
1 TTTAGCGGCATTTGTG-AAAAAGCGCCGCTAAAAGTCACGTTC
* * * * *
81793395 TTTAGCGGCATTTGTAGAAAGAGCGCAGCTAAAGGTCACATTT
1 TTTAGCGGCATTTGT-GAAAAAGCGCCGCTAAAAGTCACGTTC
* ** *
81793438 TTTAGCGGCATTTTTTTAAAAGCACCGCTAAAAGTCACGTTC
1 TTTAGCGGCATTTGTGAAAAAGCGCCGCTAAAAGTCACGTTC
* *
81793480 TTTAACGACATTT
1 TTTAGCGGCATTT
81793493 TTCTGAATAT
Statistics
Matches: 111, Mismatches: 27, Indels: 7
0.77 0.19 0.05
Matches are distributed among these distances:
42 31 0.28
43 78 0.70
44 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (42 bp):
TTTAGCGGCATTTGTGAAAAAGCGCCGCTAAAAGTCACGTTC
Found at i:81793634 original size:41 final size:42
Alignment explanation
Indices: 81793547--81793684 Score: 134
Period size: 42 Copynumber: 3.3 Consensus size: 42
81793537 TAAAGGTAAA
* * * ** * *
81793547 GTTCTTTAGCGGCGTTTGTACAAAAAGTGCCATTAAAGGTCAC
1 GTTCTTTAGCGGCATTT-TTCTAAAAGCACCACTAAAAGTCAC
* * *
81793590 GTTCTTTAGTGGCATTTTT-TTAAAGCACCGCTAAAAGTCAC
1 GTTCTTTAGCGGCATTTTTCTAAAAGCACCACTAAAAGTCAC
* ** *
81793631 GTTCTTTAACGGTGTTTTTCTAAAAGCACCACTAAAAGTCAT
1 GTTCTTTAGCGGCATTTTTCTAAAAGCACCACTAAAAGTCAC
81793673 GTTCTTTAGCGG
1 GTTCTTTAGCGG
81793685 TGTTTTTTTA
Statistics
Matches: 76, Mismatches: 18, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
41 30 0.39
42 31 0.41
43 15 0.20
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (42 bp):
GTTCTTTAGCGGCATTTTTCTAAAAGCACCACTAAAAGTCAC
Found at i:81793670 original size:42 final size:41
Alignment explanation
Indices: 81793580--81793692 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 41
81793570 AAAGTGCCAT
* * ** * *
81793580 TAAAGGTCACGTTCTTTAGTGGCATTTTTTTAAAGCACCGC
1 TAAAAGTCACGTTCTTTAGCGGTGTTTTTTAAAAGCACCAC
*
81793621 TAAAAGTCACGTTCTTTAACGGTGTTTTTCTAAAAGCACCAC
1 TAAAAGTCACGTTCTTTAGCGGTGTTTTT-TAAAAGCACCAC
*
81793663 TAAAAGTCATGTTCTTTAGCGGTGTTTTTT
1 TAAAAGTCACGTTCTTTAGCGGTGTTTTTT
81793693 TACATAAATG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 25 0.40
42 37 0.60
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (41 bp):
TAAAAGTCACGTTCTTTAGCGGTGTTTTTTAAAAGCACCAC
Found at i:81793726 original size:35 final size:35
Alignment explanation
Indices: 81793678--81793761 Score: 134
Period size: 34 Copynumber: 2.4 Consensus size: 35
81793668 GTCATGTTCT
** *
81793678 TTAGCGGTGTTTTTTTACATAAATGCCATAAAATG
1 TTAGCGGCATTTTTTTACATAAACGCCATAAAATG
81793713 TTAGCGGCA-TTTTTTACATAAACGCCATAAAATG
1 TTAGCGGCATTTTTTTACATAAACGCCATAAAATG
81793747 TTAGCGGCATTTTTT
1 TTAGCGGCATTTTTT
81793762 GCGGCGCTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
34 33 0.73
35 12 0.27
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (35 bp):
TTAGCGGCATTTTTTTACATAAACGCCATAAAATG
Found at i:81793731 original size:34 final size:34
Alignment explanation
Indices: 81793688--81793761 Score: 139
Period size: 34 Copynumber: 2.2 Consensus size: 34
81793678 TTAGCGGTGT
*
81793688 TTTTTTACATAAATGCCATAAAATGTTAGCGGCA
1 TTTTTTACATAAACGCCATAAAATGTTAGCGGCA
81793722 TTTTTTACATAAACGCCATAAAATGTTAGCGGCA
1 TTTTTTACATAAACGCCATAAAATGTTAGCGGCA
81793756 TTTTTT
1 TTTTTT
81793762 GCGGCGCTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (34 bp):
TTTTTTACATAAACGCCATAAAATGTTAGCGGCA
Found at i:81799259 original size:12 final size:12
Alignment explanation
Indices: 81799242--81799270 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
81799232 CCTAGTATGT
81799242 CACCATGGGGAG
1 CACCATGGGGAG
81799254 CACCATGGGGAG
1 CACCATGGGGAG
81799266 CACCA
1 CACCA
81799271 GTGTTATTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.31, G:0.34, T:0.07
Consensus pattern (12 bp):
CACCATGGGGAG
Found at i:81800228 original size:5 final size:5
Alignment explanation
Indices: 81800212--81800241 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
81800202 TAGAAAGATA
*
81800212 TTATT TTGTT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT
81800242 AATTTAGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:81802009 original size:40 final size:40
Alignment explanation
Indices: 81801950--81802091 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
81801940 AAATTGAATG
* * *
81801950 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
81801990 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
81802030 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
81802070 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
81802092 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:81802092 original size:40 final size:39
Alignment explanation
Indices: 81801989--81802117 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
81801979 TGCTGGAAAT
* * *
81801989 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
81802029 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
81802069 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
81802109 TATATCCGG
1 TATATCCGG
81802118 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:81809943 original size:40 final size:40
Alignment explanation
Indices: 81809877--81810043 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
81809867 AAATTGAATG
* * *
81809877 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
81809916 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
81809956 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
81809996 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
81810036 ATATCCGG
1 ATATCCGG
81810044 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:81813330 original size:113 final size:113
Alignment explanation
Indices: 81813132--81813351 Score: 350
Period size: 113 Copynumber: 1.9 Consensus size: 113
81813122 ATATTGTGGG
* * *
81813132 AATTCGTCAAAAAGACACTGAATCACTCTACGATTGCTGGGAACGATACAAAAAGTTGTGCGCAA
1 AATTCGTCAAAAAGACACTGAATCACTCTACGATTACTAGGAACAATACAAAAAGTTGTGCGCAA
81813197 GCTGCCCACAACATGGACTGACTGAACAGTCACTCTTGCAGTATTGGA
66 GCTGCCCACAACATGGACTGACTGAACAGTCACTCTTGCAGTATTGGA
** * * *
81813245 AATTCGTCAAAAAGATGCTGAATCGCTCTACGGTTACTAGGAGCAATACAAAAAGTTGTGCGCAA
1 AATTCGTCAAAAAGACACTGAATCACTCTACGATTACTAGGAACAATACAAAAAGTTGTGCGCAA
* *
81813310 GCTGCCCATAACATGGACTGATTGAACAGTCACTCTTGCAGT
66 GCTGCCCACAACATGGACTGACTGAACAGTCACTCTTGCAGT
81813352 TTTTACTCCC
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
113 97 1.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.23
Consensus pattern (113 bp):
AATTCGTCAAAAAGACACTGAATCACTCTACGATTACTAGGAACAATACAAAAAGTTGTGCGCAA
GCTGCCCACAACATGGACTGACTGAACAGTCACTCTTGCAGTATTGGA
Found at i:81819851 original size:27 final size:26
Alignment explanation
Indices: 81819780--81819856 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 26
81819770 CTTACCCTAA
81819780 ACCCAAATACCAAACTACCCAA-CCATC
1 ACCC-AATACCAAAC-ACCCAATCCATC
* * * *
81819807 AGCACAATACCCACCACCCAATCCACTT
1 A-CCCAATACCAAACACCCAATCCA-TC
*
81819835 ACCCAATACCAAACACCTAATC
1 ACCCAATACCAAACACCCAATC
81819857 TAATTAACTC
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 6 0.15
27 29 0.74
28 4 0.10
ACGTcount: A:0.42, C:0.44, G:0.01, T:0.13
Consensus pattern (26 bp):
ACCCAATACCAAACACCCAATCCATC
Found at i:81819917 original size:13 final size:13
Alignment explanation
Indices: 81819899--81819923 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81819889 ACATAATATA
81819899 CCAACACCCAAAC
1 CCAACACCCAAAC
81819912 CCAACACCCAAA
1 CCAACACCCAAA
81819924 ACAAGCCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (13 bp):
CCAACACCCAAAC
Found at i:81823330 original size:5 final size:5
Alignment explanation
Indices: 81823314--81823356 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
81823304 TAGGAAGATA
*
81823314 TTATT TTGTT TTATT TTATT TTATTAT TTATT ATTATT TTATT
1 TTATT TTATT TTATT TTATT TTA-T-T TTATT -TTATT TTATT
81823357 AATTTAGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 22 0.67
6 7 0.21
7 4 0.12
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:81823350 original size:18 final size:18
Alignment explanation
Indices: 81823323--81823362 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
81823313 ATTATTTTGT
81823323 TTTATTTTATTTTATT-A
1 TTTATTTTATTTTATTAA
81823340 TTTATTATTATTTTATTAA
1 TTTATT-TTATTTTATTAA
81823359 TTTA
1 TTTA
81823363 GGTTAAGCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.29
18 10 0.48
19 5 0.24
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTATTTTATTAA
Found at i:81828579 original size:23 final size:23
Alignment explanation
Indices: 81828553--81828601 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
81828543 TGAACATAGG
81828553 AAGATTTCCAAAAGGAGTTCAAA
1 AAGATTTCCAAAAGGAGTTCAAA
81828576 AAGATTTCCAAAAGGAGTTCAAA
1 AAGATTTCCAAAAGGAGTTCAAA
81828599 AAG
1 AAG
81828602 TAGTTTTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.20
Consensus pattern (23 bp):
AAGATTTCCAAAAGGAGTTCAAA
Found at i:81828598 original size:11 final size:11
Alignment explanation
Indices: 81828561--81828599 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
81828551 GGAAGATTTC
81828561 CAAAAGGAGTT
1 CAAAAGGAGTT
* *
81828572 CAAAAAGATTT
1 CAAAAGGAGTT
81828583 CCAAAAGGAGTT
1 -CAAAAGGAGTT
81828595 CAAAA
1 CAAAA
81828600 AGTAGTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.18
Consensus pattern (11 bp):
CAAAAGGAGTT
Found at i:81828740 original size:23 final size:23
Alignment explanation
Indices: 81828713--81828760 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
81828703 CTTCAAATAT
81828713 TTGACTTAAGTGAGAAATAAACA
1 TTGACTTAAGTGAGAAATAAACA
81828736 TTGACTTAAGTGAGAAATAAACA
1 TTGACTTAAGTGAGAAATAAACA
81828759 TT
1 TT
81828761 CTACTGGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (23 bp):
TTGACTTAAGTGAGAAATAAACA
Found at i:81834900 original size:37 final size:37
Alignment explanation
Indices: 81834854--81834932 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
81834844 TAAAAATATA
* * *
81834854 TTTTGGTCAAAAAAAACTTTTGAGCAAAAACTAAAAT
1 TTTTTGTCAAAAAAAAATTTTAAGCAAAAACTAAAAT
*
81834891 TTTTTGTCAAAAAAAAATTTTAAGTAAAAACTAAAAT
1 TTTTTGTCAAAAAAAAATTTTAAGCAAAAACTAAAAT
81834928 TTTTT
1 TTTTT
81834933 ACTTTTGCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.37
Consensus pattern (37 bp):
TTTTTGTCAAAAAAAAATTTTAAGCAAAAACTAAAAT
Found at i:81834909 original size:18 final size:18
Alignment explanation
Indices: 81834854--81834931 Score: 61
Period size: 19 Copynumber: 4.2 Consensus size: 18
81834844 TAAAAATATA
* *
81834854 TTTTGGTCAAAAAAAACT
1 TTTTAGTCAAAAAAAAAT
*
81834872 TTTGAG-CAAAAACTAAAAT
1 TTTTAGTCAAAAA--AAAAT
*
81834891 TTTTTGTCAAAAAAAAAT
1 TTTTAGTCAAAAAAAAAT
*
81834909 TTTAAGT-AAAAACTAAAAT
1 TTTTAGTCAAAAA--AAAAT
81834928 TTTT
1 TTTT
81834932 TACTTTTGCT
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
17 11 0.23
18 14 0.30
19 16 0.34
20 6 0.13
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (18 bp):
TTTTAGTCAAAAAAAAAT
Found at i:81835050 original size:18 final size:17
Alignment explanation
Indices: 81835023--81835061 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
81835013 CTTATTTAAT
81835023 AATATTTTTACCTCAAA
1 AATATTTTTACCTCAAA
*
81835040 AATATTTTTTATCTCAAA
1 AATA-TTTTTACCTCAAA
81835058 AATA
1 AATA
81835062 AAAAGGAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (17 bp):
AATATTTTTACCTCAAA
Found at i:81838858 original size:30 final size:30
Alignment explanation
Indices: 81838822--81838881 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
81838812 TTAGGGATGG
81838822 AAAAACAGGTTAAAAACAGGCAAACTAGAT
1 AAAAACAGGTTAAAAACAGGCAAACTAGAT
81838852 AAAAACAGGTTAAAAACAGGCAAACTAGAT
1 AAAAACAGGTTAAAAACAGGCAAACTAGAT
81838882 TTCTTTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (30 bp):
AAAAACAGGTTAAAAACAGGCAAACTAGAT
Found at i:81840816 original size:21 final size:20
Alignment explanation
Indices: 81840792--81840849 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
81840782 ATGAATTCAT
81840792 AAATCATAAATTCCAAAGCTA
1 AAATC-TAAATTCCAAAGCTA
* * *
81840813 AAATTTTAAAATCCAAATCTA
1 AAA-TCTAAATTCCAAAGCTA
*
81840834 AATTCTAAATTCCAAA
1 AAATCTAAATTCCAAA
81840850 TTCCAAACAC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 11 0.37
21 18 0.60
22 1 0.03
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.29
Consensus pattern (20 bp):
AAATCTAAATTCCAAAGCTA
Found at i:81840842 original size:20 final size:21
Alignment explanation
Indices: 81840798--81840850 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
81840788 TCATAAATCA
* *
81840798 TAAATTCCAAAGCTAAAATTT
1 TAAATTCCAAATCTAAAATTC
*
81840819 TAAAATCCAAATCT-AAATTC
1 TAAATTCCAAATCTAAAATTC
81840839 TAAATTCCAAAT
1 TAAATTCCAAAT
81840851 TCCAAACACC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (21 bp):
TAAATTCCAAATCTAAAATTC
Found at i:81841241 original size:52 final size:53
Alignment explanation
Indices: 81841178--81841282 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 53
81841168 AAAGCACAAT
*
81841178 ATATGAATGATACTCATGAGTGTGAGACGCTAATCGTCAATAACAT-AACATA
1 ATATGAATGATACTCATGAGTGTGAGACACTAATCGTCAATAACATAAACATA
*
81841230 ATATGAATGATACTCCTGAGTGTGAGACACTAATCGTCAATAACATAAACATA
1 ATATGAATGATACTCATGAGTGTGAGACACTAATCGTCAATAACATAAACATA
81841283 TCAATAGTGT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 44 0.88
53 6 0.12
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (53 bp):
ATATGAATGATACTCATGAGTGTGAGACACTAATCGTCAATAACATAAACATA
Found at i:81841595 original size:99 final size:99
Alignment explanation
Indices: 81841424--81841621 Score: 360
Period size: 99 Copynumber: 2.0 Consensus size: 99
81841414 GTCACTATTG
* *
81841424 ATATATTTGAAGTTTCCACAATGTGCTAAGGAAGTTTCCACTTCCAACACTACTACGACAAAACA
1 ATATATCTGAAGTATCCACAATGTGCTAAGGAAGTTTCCACTTCCAACACTACTACGACAAAACA
*
81841489 AAAATTTGTAATTTTTTGAAGATTGACAATTTAT
66 AAAATTTGCAATTTTTTGAAGATTGACAATTTAT
*
81841523 ATATATCTGAAGTATCCACAATGTGCTAAGGAAGTTTCCACTTTCAACACTACTACGACAAAACA
1 ATATATCTGAAGTATCCACAATGTGCTAAGGAAGTTTCCACTTCCAACACTACTACGACAAAACA
81841588 AAAATTTGCAATTTTTTGAAGATTGACAATTTAT
66 AAAATTTGCAATTTTTTGAAGATTGACAATTTAT
81841622 TGAACAAATC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (99 bp):
ATATATCTGAAGTATCCACAATGTGCTAAGGAAGTTTCCACTTCCAACACTACTACGACAAAACA
AAAATTTGCAATTTTTTGAAGATTGACAATTTAT
Found at i:81842844 original size:19 final size:19
Alignment explanation
Indices: 81842815--81842851 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
81842805 GAAATATTTT
81842815 TAAAAAAATT-ATAAAAAA
1 TAAAAAAATTAATAAAAAA
81842833 TAAAAAATATTAATAAAAA
1 TAAAAAA-ATTAATAAAAA
81842852 CTATGTCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 3 0.18
20 7 0.41
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
TAAAAAAATTAATAAAAAA
Found at i:81845270 original size:50 final size:50
Alignment explanation
Indices: 81845195--81845294 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
81845185 TCGAGATGAA
81845195 AGAAAAATACGCCTCATGGAGGATCAATTCCTGGCTCAACAACGATAATT
1 AGAAAAATACGCCTCATGGAGGATCAATTCCTGGCTCAACAACGATAATT
81845245 AGAAAAATACGCCTCATGGAGGATCAATTCCTGGCTCAACAACGATAATT
1 AGAAAAATACGCCTCATGGAGGATCAATTCCTGGCTCAACAACGATAATT
81845295 TCAGGAGCAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (50 bp):
AGAAAAATACGCCTCATGGAGGATCAATTCCTGGCTCAACAACGATAATT
Found at i:81854828 original size:17 final size:16
Alignment explanation
Indices: 81854808--81854868 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 16
81854798 TCATGATCCA
81854808 TTTCAATTCAATTTCAT
1 TTTCAATTC-ATTTCAT
81854825 TTTC-ATATCATTCTCA-
1 TTTCAAT-TCATT-TCAT
81854841 TTTCAATTTCATTTCAT
1 TTTCAA-TTCATTTCAT
* *
81854858 GTTCAAATCAT
1 TTTCAATTCAT
81854869 ATATTGCCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
16 16 0.43
17 20 0.54
18 1 0.03
ACGTcount: A:0.28, C:0.20, G:0.02, T:0.51
Consensus pattern (16 bp):
TTTCAATTCATTTCAT
Found at i:81854844 original size:33 final size:33
Alignment explanation
Indices: 81854806--81854868 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
81854796 TTTCATGATC
* *
81854806 CATTTCAA-TTCAATTTCATTTTCATATCATTCT
1 CATTTCAATTTC-ATTTCATGTTCAAATCATTCT
81854839 CATTTCAATTTCATTTCATGTTCAAATCAT
1 CATTTCAATTTCATTTCATGTTCAAATCAT
81854869 ATATTGCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 24 0.89
34 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.02, T:0.49
Consensus pattern (33 bp):
CATTTCAATTTCATTTCATGTTCAAATCATTCT
Found at i:81854862 original size:6 final size:5
Alignment explanation
Indices: 81854806--81854862 Score: 51
Period size: 6 Copynumber: 10.4 Consensus size: 5
81854796 TTTCATGATC
* *
81854806 CATTT CAATT CAATTT CATTTT CATAT CATTCT CATTT CAATTT CATTT
1 CATTT CATTT C-ATTT CA-TTT CATTT CATT-T CATTT C-ATTT CATTT
81854855 CATGTT CA
1 CAT-TT CA
81854863 AATCATATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
5 20 0.47
6 23 0.53
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.51
Consensus pattern (5 bp):
CATTT
Found at i:81855077 original size:5 final size:5
Alignment explanation
Indices: 81855067--81855114 Score: 78
Period size: 5 Copynumber: 9.4 Consensus size: 5
81855057 AAAACTCATA
*
81855067 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAC AAAAT AAAAT AAATAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AA
81855115 CTAGTCTTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 36 0.90
6 4 0.10
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81855896 original size:18 final size:17
Alignment explanation
Indices: 81855868--81855912 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 17
81855858 TATACTAGTA
*
81855868 ATTAATAAAATATTATT
1 ATTATTAAAATATTATT
81855885 ACTTATTAAAATATTATT
1 A-TTATTAAAATATTATT
81855903 ATTATTAAAA
1 ATTATTAAAA
81855913 ATATCATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTATTAAAATATTATT
Found at i:81855916 original size:18 final size:18
Alignment explanation
Indices: 81855873--81855912 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
81855863 TAGTAATTAA
81855873 TAAAATATTATTACTTAT
1 TAAAATATTATTACTTAT
81855891 TAAAATATTATTA-TTAT
1 TAAAATATTATTACTTAT
81855908 TAAAA
1 TAAAA
81855913 ATATCATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAAATATTATTACTTAT
Found at i:81861893 original size:6 final size:6
Alignment explanation
Indices: 81861836--81861954 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
81861826 AAGAAATATT
* * * * *
81861836 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATTAGA ATCAGGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * * *
81861885 ATCAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATTAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A
81861936 A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
81861955 GTGAATACAA
Statistics
Matches: 82, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
5 6 0.07
6 65 0.79
7 7 0.09
8 4 0.05
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:81861904 original size:31 final size:31
Alignment explanation
Indices: 81861850--81861932 Score: 94
Period size: 31 Copynumber: 2.7 Consensus size: 31
81861840 GAACTAGAAT
* * *
81861850 CAAAATGAGAATCAAAATTAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGGTGA
* * *
81861881 TAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGGTGA
* *
81861912 CAAAATTAGAATCAGTATCAG
1 CAAAATCAGAATCAGAATCAG
81861933 GTAACAGAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (31 bp):
CAAAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:81861922 original size:25 final size:25
Alignment explanation
Indices: 81861890--81861954 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
81861880 ATAGAATCAG
* *
81861890 AATCAGAATCAGAATTAGGTGACAA
1 AATCAGAATCAGAATCAGGTAACAA
* * *
81861915 AATTAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAA
81861940 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
81861955 GTGAATACAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAA
Found at i:81861954 original size:31 final size:29
Alignment explanation
Indices: 81861857--81861954 Score: 78
Period size: 31 Copynumber: 3.4 Consensus size: 29
81861847 AATCAAAATG
* *
81861857 AGAATCAAAATTAGAATCAGGTGATAGAATC
1 AGAATCAGAATCAGAATCAGGT-A-AGAATC
*
81861888 AGAATCAGAATCAGAATTAGGT--G-A-C
1 AGAATCAGAATCAGAATCAGGTAAGAATC
* * *
81861913 AAAATTAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGT-A-AGAATC
81861944 AGAATCAGAAT
1 AGAATCAGAAT
81861955 GTGAATACAA
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
25 19 0.37
26 1 0.02
27 1 0.02
29 1 0.02
30 1 0.02
31 29 0.56
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.21
Consensus pattern (29 bp):
AGAATCAGAATCAGAATCAGGTAAGAATC
Found at i:81862802 original size:27 final size:27
Alignment explanation
Indices: 81862772--81863108 Score: 260
Period size: 27 Copynumber: 13.0 Consensus size: 27
81862762 GGGGCAAAAT
* *
81862772 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
81862799 GGTAATTCTACCTTATAAAGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
81862826 GGT-A---TACCCTAAAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
81862849 AGTAATTTTATCCTACAGGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
81862876 AGTAATTCTACCCTATAAGTGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
81862903 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
81862930 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
81862957 GGTAATTCTACCCTAC-A-GG----T-
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
81862977 --TAATTTTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
81863002 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
81863029 AGT-ATTTCTACCCTACAACGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
81863056 GGT-ATTTCTACCCTACAGGGGCATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
81863083 AGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTTTACCCTACAAGGGTATTT
81863109 TAATAATTTT
Statistics
Matches: 253, Mismatches: 40, Indels: 34
0.77 0.12 0.10
Matches are distributed among these distances:
18 12 0.05
20 2 0.01
21 1 0.00
23 18 0.07
24 2 0.01
25 2 0.01
26 9 0.04
27 201 0.79
28 6 0.02
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:81862900 original size:54 final size:54
Alignment explanation
Indices: 81862773--81863108 Score: 331
Period size: 54 Copynumber: 6.5 Consensus size: 54
81862763 GGGCAAAATG
* * * * * * * *
81862773 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTATAAAGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
* * * * *
81862827 GT-A---TACCCTAAAAGGGTATTTCAGTAATTT-TATCCTACAGGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGT-ATTTCTACCCTACAAGGGTATTTCA
* *
81862877 GTAATTCTACCCTATAAGTGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
* *
81862931 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC-A-GG----T--
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
* * * *
81862977 -TAATTTTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
* * * *
81863030 GTATTTCTACCCTACAACGGTATTTCGGTATTTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
*
81863084 GTAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
81863109 TAATAATTTT
Statistics
Matches: 228, Mismatches: 39, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
45 35 0.15
46 1 0.00
47 2 0.01
48 1 0.00
50 33 0.14
51 5 0.02
52 2 0.01
53 6 0.03
54 143 0.63
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCA
Found at i:81863001 original size:99 final size:99
Alignment explanation
Indices: 81862878--81863074 Score: 340
Period size: 99 Copynumber: 2.0 Consensus size: 99
81862868 GGTATCTCAG
* *
81862878 TAATTCTACCCTATAAGTGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTATAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
*
81862943 TACAAGGGTATTTCGGTAATTCTACCCTACAGGT
66 TACAACGGTATTTCGGTAATTCTACCCTACAGGT
* *
81862977 TAATTTTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTATAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
*
81863042 TACAACGGTATTTCGGTATTTCTACCCTACAGG
66 TACAACGGTATTTCGGTAATTCTACCCTACAGG
81863075 GGCATTTCAG
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 92 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (99 bp):
TAATTCTACCCTATAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
TACAACGGTATTTCGGTAATTCTACCCTACAGGT
Found at i:81863026 original size:126 final size:126
Alignment explanation
Indices: 81862851--81863101 Score: 394
Period size: 126 Copynumber: 2.0 Consensus size: 126
81862841 GGTATTTCAG
* * * *
81862851 TAATTTTATCCTACAGGGGTATCTCAGTAATTCTACCCTATAAGTGTATTTCGGTATTTCTACCC
1 TAATTTTACCCTACAGGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
* * *
81862916 TACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGT
66 TACAACGGTATTTCAGTATTTCTACCCTACAAGGGCATTTCAGTAATTCTACCCTACAGGT
* * *
81862977 TAATTTTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
1 TAATTTTACCCTACAGGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
* *
81863042 TACAACGGTATTTCGGTATTTCTACCCTACAGGGGCATTTCAGTAATTCTACCCTACAGG
66 TACAACGGTATTTCAGTATTTCTACCCTACAAGGGCATTTCAGTAATTCTACCCTACAGG
81863102 GGTATTTTAA
Statistics
Matches: 113, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 113 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (126 bp):
TAATTTTACCCTACAGGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCC
TACAACGGTATTTCAGTATTTCTACCCTACAAGGGCATTTCAGTAATTCTACCCTACAGGT
Found at i:81863185 original size:27 final size:27
Alignment explanation
Indices: 81863137--81863438 Score: 247
Period size: 27 Copynumber: 11.3 Consensus size: 27
81863127 AGGGTAAAAT
* * * *
81863137 GGTAATTCTATAAATTGGGGGTACTTT-
1 GGTAATTTTACAAATCGAGGGTA-TTTC
*
81863164 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTC
* * * *
81863191 AGTAGTTTTATAAATCAAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTC
** *
81863218 AATAATTTTGCAAA-CTGAGGGTATTTC
1 GGTAATTTTACAAATC-GAGGGTATTTC
*
81863245 GATAATTTTACAAATCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTC
* **
81863272 AGTAATTTTAC-AATCGACAGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTC
* ** *
81863298 GATAATTTTACAAATTAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTC
* * *
81863325 AGTAATTTTAC-AATCGATGATATTTC
1 GGTAATTTTACAAATCGAGGGTATTTC
* * *
81863351 GGTAATTTTACAAATTGAGGATATTTG
1 GGTAATTTTACAAATCGAGGGTATTTC
* * *
81863378 GGTAATTTTATAAACCGGGGGTACTTT-
1 GGTAATTTTACAAATCGAGGGTA-TTTC
* *
81863405 GGTAATTTTACAACT-GGGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTC
*
81863431 AGTAATTT
1 GGTAATTT
81863439 GATAAACTAA
Statistics
Matches: 220, Mismatches: 48, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
25 3 0.01
26 60 0.27
27 153 0.70
28 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTC
Found at i:81863203 original size:54 final size:53
Alignment explanation
Indices: 81863139--81863438 Score: 266
Period size: 53 Copynumber: 5.6 Consensus size: 53
81863129 GGTAAAATGG
* * * *
81863139 TAATTCTATAAATTGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTC-A
1 TAATTTTACAAATTGAGGGTA-TTTCAGTAATTTTACAA-TCGAGGGTATTTCGA
* * ** * * *
81863192 GTAGTTTTATAAATCAAGGGTATTTCAATAATTTTGCAAACTGAGGGTATTTCGA
1 -TAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATC-GAGGGTATTTCGA
* **
81863247 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACAGTATTTCGA
1 TAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGA
* * * * *
81863300 TAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAATCGATGATATTTCGG
1 TAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGA
* ** * * * *
81863353 TAATTTTACAAATTGAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTT-GG
1 TAATTTTACAAATTGAGGGTATTTCAGTAATTTTA-CAATCGAGGGTA-TTTCGA
* *
81863407 TAATTTTAC-AACTGGGGGTATTTCAGTAATTT
1 TAATTTTACAAATTGAGGGTATTTCAGTAATTT
81863439 GATAAACTAA
Statistics
Matches: 203, Mismatches: 38, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
53 110 0.54
54 89 0.44
55 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (53 bp):
TAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGA
Found at i:81863335 original size:80 final size:79
Alignment explanation
Indices: 81863155--81863438 Score: 286
Period size: 80 Copynumber: 3.6 Consensus size: 79
81863145 TATAAATTGG
* * * * *
81863155 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAGTTTTATAAATCAAGGGTATTTCAA
1 GGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA-CAATCGA-GGTATTTCGA
*
81863220 TAATTTTGCAAACTGA
64 TAATTTTACAAACTGA
* *
81863236 GGGTA-TTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACAGTATTTCGA
1 GGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGA-GGTATTTCGA
* *
81863300 TAATTTTACAAATTAA
64 TAATTTTACAAACTGA
* * * * * * * *
81863316 GGGTATTTTAGTAATTTTAC-AATCGATGATATTTCGGTAATTTTACAAATTGAGGATATTTGGG
1 GGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AATCGAGG-TATTTCGA
* * *
81863380 TAATTTTATAAACCGG
64 TAATTTTACAAACTGA
* *
81863396 GGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 GGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
81863439 GATAAACTAA
Statistics
Matches: 166, Mismatches: 32, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
79 24 0.14
80 98 0.59
81 44 0.27
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (79 bp):
GGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAGGTATTTCGATA
ATTTTACAAACTGA
Found at i:81863446 original size:27 final size:26
Alignment explanation
Indices: 81863379--81863446 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 26
81863369 GGATATTTGG
* *
81863379 GTAATTTTATAAACCGGGGGTACTTTG
1 GTAA-TTTATAAACTGGGGGTACTTTA
81863406 GTAATTT-TACAACTGGGGGTA-TTTCA
1 GTAATTTATA-AACTGGGGGTACTTT-A
81863432 GTAATTTGATAAACT
1 GTAATTT-ATAAACT
81863447 AATGTACTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
25 5 0.14
26 20 0.57
27 8 0.23
28 2 0.06
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (26 bp):
GTAATTTATAAACTGGGGGTACTTTA
Found at i:81865077 original size:17 final size:16
Alignment explanation
Indices: 81865056--81865117 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 16
81865046 TTCATGATCA
81865056 ATTTCAATTCAATTC-C
1 ATTTCAATTC-ATTCTC
*
81865072 ATTTTCATTTCATTCTC
1 A-TTTCAATTCATTCTC
81865089 ATTTCAATTTCATT-TC
1 ATTTCAA-TTCATTCTC
*
81865105 ATATTCAAATCAT
1 AT-TTCAATTCAT
81865118 ATATTGCCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 18 0.46
17 21 0.54
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTCAATTCATTCTC
Found at i:81866136 original size:18 final size:17
Alignment explanation
Indices: 81866108--81866152 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 17
81866098 TATAATAGTA
*
81866108 ATTAATAAAATATTATT
1 ATTATTAAAATATTATT
81866125 ACTTATTAAAATATTATT
1 A-TTATTAAAATATTATT
81866143 ATTATTAAAA
1 ATTATTAAAA
81866153 ATATCATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTATTAAAATATTATT
Found at i:81866156 original size:18 final size:18
Alignment explanation
Indices: 81866113--81866152 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
81866103 TAGTAATTAA
81866113 TAAAATATTATTACTTAT
1 TAAAATATTATTACTTAT
81866131 TAAAATATTATTA-TTAT
1 TAAAATATTATTACTTAT
81866148 TAAAA
1 TAAAA
81866153 ATATCATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAAATATTATTACTTAT
Found at i:81868777 original size:23 final size:24
Alignment explanation
Indices: 81868751--81868797 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
81868741 ACAAGAAGTA
81868751 AATAC-AAAAAAGAAACTCTAATC
1 AATACAAAAAAAGAAACTCTAATC
81868774 AATACAAAAAAAGAAACTCTAATC
1 AATACAAAAAAAGAAACTCTAATC
81868798 TAAGGTAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.62, C:0.17, G:0.04, T:0.17
Consensus pattern (24 bp):
AATACAAAAAAAGAAACTCTAATC
Found at i:81871553 original size:16 final size:17
Alignment explanation
Indices: 81871522--81871559 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
81871512 TCACCTTTTT
81871522 TTCTATTTACTTTATTC
1 TTCTATTTACTTTATTC
*
81871539 TTCTATTTA-TTTATTT
1 TTCTATTTACTTTATTC
81871555 TTCTA
1 TTCTA
81871560 ATTCTCCGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.68
Consensus pattern (17 bp):
TTCTATTTACTTTATTC
Found at i:81877814 original size:18 final size:17
Alignment explanation
Indices: 81877785--81877867 Score: 55
Period size: 18 Copynumber: 4.6 Consensus size: 17
81877775 TATCGTTAAT
81877785 ATTTTAAAATATAATATTA
1 ATTTT-AAATATAA-ATTA
*
81877804 ATTTTAAATAT--TTCTA
1 ATTTTAAATATAAAT-TA
*
81877820 AGTATTT-AATATTAATTA
1 A-T-TTTAAATATAAATTA
81877838 ATTATTAAATATAAATTA
1 ATT-TTAAATATAAATTA
*
81877856 TATTCTAAATAT
1 -ATTTTAAATAT
81877868 TTAACTATAA
Statistics
Matches: 52, Mismatches: 4, Indels: 17
0.71 0.05 0.23
Matches are distributed among these distances:
15 1 0.02
16 4 0.08
17 9 0.17
18 29 0.56
19 9 0.17
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (17 bp):
ATTTTAAATATAAATTA
Found at i:81879547 original size:30 final size:30
Alignment explanation
Indices: 81879511--81879568 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
81879501 TTTTTAGGAT
* *
81879511 CCACACGGGCTGGATACATGCCCGTGTGAG
1 CCACACGGGCTGGACACATGCCCATGTGAG
*
81879541 CCACACGGGCTGGACATATGCCCATGTG
1 CCACACGGGCTGGACACATGCCCATGTG
81879569 CTAGCCCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (30 bp):
CCACACGGGCTGGACACATGCCCATGTGAG
Found at i:81883786 original size:16 final size:15
Alignment explanation
Indices: 81883760--81883789 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81883750 ACTAGATCGG
81883760 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
81883775 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
81883790 TCGGTATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:81884571 original size:28 final size:27
Alignment explanation
Indices: 81884480--81884585 Score: 81
Period size: 28 Copynumber: 3.7 Consensus size: 27
81884470 ACTTGTTATA
* *
81884480 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
* *
81884508 GGGCTAGGCCCAGTATACTTTGATATTG-TAAG
1 GGGCTAGGCCCAG---A--TTAATATTGAT-AT
81884540 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
81884568 GGGCTAAGGCCCAG-TTAA
1 GGGCT-AGGCCCAGATTAA
81884586 CTTTGATTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
27 11 0.17
28 27 0.42
29 2 0.03
30 2 0.03
31 1 0.02
32 15 0.23
33 7 0.11
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATATTGATAT
Found at i:81892145 original size:27 final size:27
Alignment explanation
Indices: 81892047--81892155 Score: 114
Period size: 27 Copynumber: 4.0 Consensus size: 27
81892037 AGCATGGCTG
* *
81892047 CCAGAACAGATAATT-TGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
** *
81892073 CCAGATACAGATAACCGTGGCAGAACCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
81892101 TCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
81892128 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
81892155 C
1 C
81892156 TAGGACGCTT
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 6 0.09
27 47 0.70
28 14 0.21
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:81896213 original size:47 final size:47
Alignment explanation
Indices: 81896160--81896501 Score: 549
Period size: 47 Copynumber: 7.3 Consensus size: 47
81896150 ACAAGATATG
81896160 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
81896207 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
81896254 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
81896301 TATATGTGACAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
81896348 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
81896395 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
81896442 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
81896489 TAAATGTGATAAG
1 TATATGTGATAAG
81896502 TCCCGAAGGG
Statistics
Matches: 269, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 269 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:81896501 original size:94 final size:94
Alignment explanation
Indices: 81896160--81896497 Score: 604
Period size: 94 Copynumber: 3.6 Consensus size: 94
81896150 ACAAGATATG
81896160 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
81896225 ATGGCCGATGTGATGAATGTGAAAGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
81896254 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
*
81896319 ATGGCCGATGTAATGAATGTGAAAGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
81896348 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
* *
81896413 ATGGCCGATGTGATGGATGTGAAGGTGTA
66 ATGGCCGATGTGATGAATGTGAAAGTGTA
* *
81896442 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
81896498 TAAGTCCCGA
Statistics
Matches: 234, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 234 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:81898551 original size:38 final size:38
Alignment explanation
Indices: 81898448--81898560 Score: 120
Period size: 38 Copynumber: 3.0 Consensus size: 38
81898438 AATCCGGGCT
* * * * *
81898448 TAAAGACCCGATAACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGACCTGATGACTATATGCAGAGATTATGTCCGGG
** *
81898486 TAAAGACCTGATGACTATATGTGGAGATTATGCCCGGG
1 TAAAGACCTGATGACTATATGCAGAGATTATGTCCGGG
* *
81898524 TAAAGATCC-GATGGCTATGTGCAGAGATTATGTCCGG
1 TAAAGA-CCTGATGACTATATGCAGAGATTATGTCCGG
81898561 ATTAAAATTC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 61 0.97
39 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (38 bp):
TAAAGACCTGATGACTATATGCAGAGATTATGTCCGGG
Found at i:81898589 original size:38 final size:38
Alignment explanation
Indices: 81898471--81898590 Score: 109
Period size: 38 Copynumber: 3.2 Consensus size: 38
81898461 ACTATAAGTA
* * * *
81898471 GAGATTGTGTCCGGGTAAAGA-CCTGATGACTATATGTG
1 GAGATTATGCCCGGGTAAAGATCC-GATGGCTATGTGTG
**
81898509 GAGATTATGCCCGGGTAAAGATCCGATGGCTATGTGCA
1 GAGATTATGCCCGGGTAAAGATCCGATGGCTATGTGTG
* * * * *
81898547 GAGATTATGTCCGGATTAAA-ATTCGCTGGCTTTGTGTG
1 GAGATTATGCCCGG-GTAAAGATCCGATGGCTATGTGTG
81898585 GAGATT
1 GAGATT
81898591 TCATCAGAGT
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
38 61 0.91
39 6 0.09
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30
Consensus pattern (38 bp):
GAGATTATGCCCGGGTAAAGATCCGATGGCTATGTGTG
Found at i:81898681 original size:40 final size:40
Alignment explanation
Indices: 81898621--81898848 Score: 357
Period size: 40 Copynumber: 5.7 Consensus size: 40
81898611 GATGATGATT
*
81898621 CGGGTTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATC
1 CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATC
*
81898661 CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATT
1 CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATC
* * * *
81898701 CAGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTACATT
1 CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATC
81898741 CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATC
1 CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATC
* *
81898781 TGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATC
1 CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATC
** *
81898821 CGGGCTAAGTCCTGAAGGGCATTCGTGC
1 CGGGCTAAGTCCCAAAGAGCATTCGTGC
81898849 CGATGATGTG
Statistics
Matches: 174, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 174 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGTTACATC
Found at i:81899045 original size:25 final size:25
Alignment explanation
Indices: 81899017--81899072 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
81899007 TGTGTAATAA
*
81899017 CGAATTAATAT-AGGCACTATGTGTG
1 CGAATTAAT-TGAGACACTATGTGTG
* *
81899042 CGAATGAATTGAGACACTGTGTGTG
1 CGAATTAATTGAGACACTATGTGTG
81899067 CGAATT
1 CGAATT
81899073 CTTTAACCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (25 bp):
CGAATTAATTGAGACACTATGTGTG
Found at i:81899095 original size:28 final size:28
Alignment explanation
Indices: 81899056--81899209 Score: 118
Period size: 28 Copynumber: 5.5 Consensus size: 28
81899046 TGAATTGAGA
*
81899056 CACTGTGTGTGCGAATTCTTTAACCGAG
1 CACTATGTGTGCGAATTCTTTAACCGAG
** * **
81899084 CACTATGTGTGCGAGA-TCGGTCAGTG-G
1 CACTATGTGTGCGA-ATTCTTTAACCGAG
*
81899111 ACACTGTGTGTGCGAATTCTTTAACCGAG
1 -CACTATGTGTGCGAATTCTTTAACCGAG
** * **
81899140 CACTATGTGTGCGAGA-TCGGTCAGTG-G
1 CACTATGTGTGCGA-ATTCTTTAACCGAG
* *
81899167 ACACTGTGTGTGCAAATTCTTTAACCGAG
1 -CACTATGTGTGCGAATTCTTTAACCGAG
81899196 CACTATGTGTGCGA
1 CACTATGTGTGCGA
81899210 GATCGGTCAG
Statistics
Matches: 91, Mismatches: 27, Indels: 16
0.68 0.20 0.12
Matches are distributed among these distances:
27 4 0.04
28 83 0.91
29 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTATGTGTGCGAATTCTTTAACCGAG
Found at i:81899124 original size:56 final size:56
Alignment explanation
Indices: 81899054--81899236 Score: 348
Period size: 56 Copynumber: 3.3 Consensus size: 56
81899044 AATGAATTGA
81899054 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
81899110 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
*
81899166 GACACTGTGTGTGCAAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
*
81899222 GGCACTGTGTGTGCG
1 GACACTGTGTGTGCG
81899237 GATTTCGTTT
Statistics
Matches: 124, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 124 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (56 bp):
GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
Found at i:81899226 original size:28 final size:28
Alignment explanation
Indices: 81899083--81899236 Score: 114
Period size: 28 Copynumber: 5.5 Consensus size: 28
81899073 CTTTAACCGA
81899083 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* * ** * ** *
81899111 ACACTGTGTGTGCGA-ATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
81899139 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* * * ** * ** *
81899167 ACACTGTGTGTGC-AAATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
81899195 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
*
81899223 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
81899237 GATTTCGTTT
Statistics
Matches: 87, Mismatches: 35, Indels: 8
0.67 0.27 0.06
Matches are distributed among these distances:
27 3 0.03
28 81 0.93
29 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTGG
Found at i:81900238 original size:24 final size:24
Alignment explanation
Indices: 81900206--81900279 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
81900196 ACACAGTTCA
*
81900206 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTGATCAGCTCCTAAATCCTCT
81900230 CCCTGATCAGCTCCTAAATCCTCT
1 CCCTGATCAGCTCCTAAATCCTCT
*
81900254 CCCTTG-TCAGCTCCTAAATCTTCT
1 CCC-TGATCAGCTCCTAAATCCTCT
81900278 CC
1 CC
81900280 AGACAGACTT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
24 45 0.96
25 2 0.04
ACGTcount: A:0.20, C:0.42, G:0.07, T:0.31
Consensus pattern (24 bp):
CCCTGATCAGCTCCTAAATCCTCT
Found at i:81901328 original size:19 final size:17
Alignment explanation
Indices: 81901298--81901348 Score: 84
Period size: 17 Copynumber: 2.9 Consensus size: 17
81901288 AAAGGAAGGT
81901298 TTTTACAAAGAGAGAATG
1 TTTT-CAAAGAGAGAATG
81901316 TTTTCAAAGAGAGAATG
1 TTTTCAAAGAGAGAATG
*
81901333 TTTTCAAAGGGAGAAT
1 TTTTCAAAGAGAGAAT
81901349 ACTGAACAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 28 0.88
18 4 0.12
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (17 bp):
TTTTCAAAGAGAGAATG
Found at i:81901360 original size:18 final size:18
Alignment explanation
Indices: 81901337--81901372 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81901327 AGAATGTTTT
81901337 CAAAGGGAGAATACTGAA
1 CAAAGGGAGAATACTGAA
81901355 CAAAGGGAGAATACTGAA
1 CAAAGGGAGAATACTGAA
81901373 AGTAAGATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.28, T:0.11
Consensus pattern (18 bp):
CAAAGGGAGAATACTGAA
Found at i:81904480 original size:26 final size:26
Alignment explanation
Indices: 81904444--81904527 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
81904434 TGATACAAAT
81904444 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
81904470 TGATAATAGGTTAGGTAAATGATCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
81904496 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
81904522 TGATAA
1 TGATAA
81904528 GAATTTAATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:81908170 original size:72 final size:72
Alignment explanation
Indices: 81908037--81908365 Score: 450
Period size: 72 Copynumber: 4.6 Consensus size: 72
81908027 TTTTATATAC
* * * * * *
81908037 AAAATCAAATATAAACAACTATTGATAAAGCTA-ATTTAGTATAAATAAGTGGAACATAAATTCA
1 AAAACCAAACATAAACAACTATTGATAAAACTAGATTAAGCATAAATAAGTAGAACATAAATTCA
81908101 ATATCCA
66 ATATCCA
* *
81908108 AAAACCAAACATAAACAATTATTGATAAAACTAGATTAAGCATAAATAAGTAGACCATAAATTCA
1 AAAACCAAACATAAACAACTATTGATAAAACTAGATTAAGCATAAATAAGTAGAACATAAATTCA
81908173 ATATCCA
66 ATATCCA
* * * * * * *
81908180 AAAATCAAACATAAACAACTGTTGATAAAATTAGATTGCA-CATAAACAAGTATAACTTAAATTC
1 AAAACCAAACATAAACAACTATTGATAAAACTAGATT-AAGCATAAATAAGTAGAACATAAATTC
81908244 AATATCCA
65 AATATCCA
*
81908252 AAAACCAAACATAAACAACTGTTGATAAAACTAGATTACA-CATAAATAAGTAGAACATAAATTC
1 AAAACCAAACATAAACAACTATTGATAAAACTAGATTA-AGCATAAATAAGTAGAACATAAATTC
81908316 AATATCCA
65 AATATCCA
* *
81908324 AAAACCAAACATTAACAACTATTGATAAAACTAG-TTTAGCAT
1 AAAACCAAACATAAACAACTATTGATAAAACTAGATTAAGCAT
81908366 TGTTGTTTAG
Statistics
Matches: 228, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
70 1 0.00
71 34 0.15
72 192 0.84
73 1 0.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (72 bp):
AAAACCAAACATAAACAACTATTGATAAAACTAGATTAAGCATAAATAAGTAGAACATAAATTCA
ATATCCA
Found at i:81908805 original size:21 final size:19
Alignment explanation
Indices: 81908780--81908825 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 19
81908770 TTTCTTTTTT
81908780 TCATTTCCATAAATGTGAACA
1 TCATTT-CA-AAATGTGAACA
81908801 TCATTT-AAAATGTGAACA
1 TCATTTCAAAATGTGAACA
81908819 TCATTTC
1 TCATTTC
81908826 TCACATTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 17 0.71
19 1 0.04
21 6 0.25
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCATTTCAAAATGTGAACA
Found at i:81908813 original size:18 final size:18
Alignment explanation
Indices: 81908790--81908824 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
81908780 TCATTTCCAT
81908790 AAATGTGAACATCATTTA
1 AAATGTGAACATCATTTA
81908808 AAATGTGAACATCATTT
1 AAATGTGAACATCATTT
81908825 CTCACATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (18 bp):
AAATGTGAACATCATTTA
Found at i:81910380 original size:30 final size:31
Alignment explanation
Indices: 81910346--81910409 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
81910336 ATTTATTTTA
*
81910346 TTGTTAA-TTTTCTTATTATTTTA-AAGACAT
1 TTGTTAATTTTTATTATTATTTTAGAAG-CAT
81910376 TTGTTAATTTTTATTATTATTTTAGAAGCAT
1 TTGTTAATTTTTATTATTATTTTAGAAGCAT
81910407 TTG
1 TTG
81910410 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 7 0.23
31 21 0.68
32 3 0.10
ACGTcount: A:0.28, C:0.05, G:0.09, T:0.58
Consensus pattern (31 bp):
TTGTTAATTTTTATTATTATTTTAGAAGCAT
Found at i:81911760 original size:22 final size:22
Alignment explanation
Indices: 81911708--81911761 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
81911698 ATTGAATCAA
* *
81911708 AGAAAGGAAAATAAGCTTTTGG
1 AGAAAAGAAAATAAGCTTTTGC
* *
81911730 AGAAGAGAAAATGAGCTTTTGC
1 AGAAAAGAAAATAAGCTTTTGC
*
81911752 ATAAAAGAAA
1 AGAAAAGAAA
81911762 GCAGTCGATC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.50, C:0.06, G:0.24, T:0.20
Consensus pattern (22 bp):
AGAAAAGAAAATAAGCTTTTGC
Found at i:81914904 original size:24 final size:24
Alignment explanation
Indices: 81914877--81914932 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
81914867 TAAAAGCAAC
*
81914877 ATAGAATACGTCGTAAAGGCGTTT
1 ATAGAATACGTCGTAAAGGCATTT
*
81914901 ATAGAATTCGTCGTAAAGGCATTT
1 ATAGAATACGTCGTAAAGGCATTT
81914925 ATAGAATA
1 ATAGAATA
81914933 TGTCAAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAGAATACGTCGTAAAGGCATTT
Found at i:81914978 original size:22 final size:23
Alignment explanation
Indices: 81914943--81915024 Score: 94
Period size: 23 Copynumber: 3.6 Consensus size: 23
81914933 TGTCAAAAAG
* *
81914943 GCCAAACAGAATACGCCACGC-A
1 GCCAAACAAAATACGCCACACAA
* *
81914965 GGCATACAAAATACGCCACACAA
1 GCCAAACAAAATACGCCACACAA
* *
81914988 GCCAAACAAAATATGCCACAAAA
1 GCCAAACAAAATACGCCACACAA
*
81915011 GCCAAACAGAATAC
1 GCCAAACAAAATAC
81915025 TCCATAAAGG
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
22 17 0.35
23 32 0.65
ACGTcount: A:0.49, C:0.30, G:0.13, T:0.07
Consensus pattern (23 bp):
GCCAAACAAAATACGCCACACAA
Found at i:81917378 original size:40 final size:40
Alignment explanation
Indices: 81917334--81917409 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
81917324 AAAAAAATAT
81917334 ATAATTTTTAT-ATCTTTTTAAGAGTTTTT-AAATTTTAAAA
1 ATAATTTTTATAAT-TTTTTAA-AGTTTTTAAAATTTTAAAA
*
81917374 ATAATTTTTATAATTTTTTAAATTTTTTAAAATTTT
1 ATAATTTTTATAATTTTTTAAAGTTTTTAAAATTTT
81917410 GAAAGTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
39 6 0.18
40 25 0.76
41 2 0.06
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (40 bp):
ATAATTTTTATAATTTTTTAAAGTTTTTAAAATTTTAAAA
Found at i:81917401 original size:9 final size:9
Alignment explanation
Indices: 81917338--81917409 Score: 54
Period size: 10 Copynumber: 7.3 Consensus size: 9
81917328 AAATATATAA
*
81917338 TTTTTATAT
1 TTTTTAAAT
*
81917347 CTTTTTAAGAG
1 -TTTTTAA-AT
81917358 TTTTTAAAT
1 TTTTTAAAT
**
81917367 TTTAAAAAT
1 TTTTTAAAT
81917376 AATTTTTATAAT
1 --TTTTTA-AAT
81917388 TTTTTAAAT
1 TTTTTAAAT
81917397 TTTTTAAAAT
1 TTTTT-AAAT
81917407 TTT
1 TTT
81917410 GAAAGTTTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
9 16 0.32
10 26 0.52
11 5 0.10
12 3 0.06
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:81927056 original size:19 final size:19
Alignment explanation
Indices: 81927032--81927072 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
81927022 ATTTAATCTT
81927032 AATTCTAATAAAATTATAA
1 AATTCTAATAAAATTATAA
* *
81927051 AATTCTCATAAAATTTTAA
1 AATTCTAATAAAATTATAA
81927070 AAT
1 AAT
81927073 ATAAATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (19 bp):
AATTCTAATAAAATTATAA
Found at i:81932486 original size:17 final size:17
Alignment explanation
Indices: 81932464--81932502 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
81932454 TGTTGAGGTT
81932464 AAATATAA-ATATTAATA
1 AAATATAATATA-TAATA
*
81932481 AAATATAATATATATTA
1 AAATATAATATATAATA
81932498 AAATA
1 AAATA
81932503 ATTTTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATATATAATA
Found at i:81935179 original size:19 final size:21
Alignment explanation
Indices: 81935130--81935180 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
81935120 AATAAGTAAA
81935130 ATAAAATA-ATATTACTATAT
1 ATAAAATATATATTACTATAT
*
81935150 ATAAAGGATATATA-TAC-ATGT
1 ATAAA--ATATATATTACTATAT
81935171 ATAAAATATA
1 ATAAAATATA
81935181 ATAGGGGTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
19 5 0.19
20 5 0.19
21 8 0.30
22 6 0.22
23 3 0.11
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (21 bp):
ATAAAATATATATTACTATAT
Found at i:81937260 original size:29 final size:28
Alignment explanation
Indices: 81937158--81937260 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
81937148 GTGACAAGAT
*
81937158 TGGCACTAAGTGTGCAAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATA-TA
**
81937187 TGGCACTAAGTGTGCGAATTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
81937216 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
81937245 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81937261 TGATCGATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.06
29 58 0.92
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:81944466 original size:29 final size:29
Alignment explanation
Indices: 81944424--81944482 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
81944414 TGAATTAGTT
81944424 AAATGTTCATATAGGTTGTCTTGATGAAA
1 AAATGTTCATATAGGTTGTCTTGATGAAA
81944453 AAATGTTCATATAGGTTGTCTTGATGAAA
1 AAATGTTCATATAGGTTGTCTTGATGAAA
81944482 A
1 A
81944483 GAGAAAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (29 bp):
AAATGTTCATATAGGTTGTCTTGATGAAA
Found at i:81945281 original size:29 final size:29
Alignment explanation
Indices: 81945212--81945313 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
81945202 GTGACAAGAT
81945212 TGGCACTAAGTGTGC-AAGCTTGAAA--ATA
1 TGGCACTAAGTGTGCGAA-CTT-AAATCATA
* *
81945240 TGGCACTAAGTGTGCGAATTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATCATA
* * *
81945269 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAACTTAAATCATA
81945298 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81945314 TGATCGATTA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 3 0.05
28 17 0.27
29 44 0.69
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATCATA
Found at i:81946754 original size:2 final size:2
Alignment explanation
Indices: 81946747--81946776 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
81946737 GGGTCTTACA
81946747 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81946777 TAGAAAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81947057 original size:25 final size:26
Alignment explanation
Indices: 81947029--81947082 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
81947019 AACGCTGATA
*
81947029 GATAAAAAATAAAA-ATAATAATAGT
1 GATAAAAAATAAAAGATAATAATAAT
*
81947054 GAT-AAAAATAAAAGATAATAGTAAT
1 GATAAAAAATAAAAGATAATAATAAT
81947079 GATA
1 GATA
81947083 GTGGTAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (26 bp):
GATAAAAAATAAAAGATAATAATAAT
Found at i:81947084 original size:31 final size:31
Alignment explanation
Indices: 81947030--81947100 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
81947020 ACGCTGATAG
81947030 ATAAAAAATAAAAATAATAATAGTGATAAAA
1 ATAAAAAATAAAAATAATAATAGTGATAAAA
* * * * * *
81947061 ATAAAAGATAATAGTAATGATAGTGGTAATA
1 ATAAAAAATAAAAATAATAATAGTGATAAAA
*
81947092 ATAATAAAT
1 ATAAAAAAT
81947101 CAATGAATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (31 bp):
ATAAAAAATAAAAATAATAATAGTGATAAAA
Found at i:81948588 original size:83 final size:84
Alignment explanation
Indices: 81948484--81948649 Score: 271
Period size: 83 Copynumber: 2.0 Consensus size: 84
81948474 CGTGACTTCA
* *
81948484 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTCGCTTAA-TCCACTGAAACTTCAAG
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTCGATCAATTCCACTGAAACTTCAAG
81948548 GAGATCTGCTGTGGCTTTG
66 GAGATCTGCTGTGGCTTTG
* ** *
81948567 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTATCAATTCCACTGGAACTTCAAG
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTCGATCAATTCCACTGAAACTTCAAG
81948632 GAGATCTGCTGTGGCTTT
66 GAGATCTGCTGTGGCTTT
81948650 TAGCTGCTCC
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 42 0.55
84 34 0.45
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (84 bp):
ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTCGATCAATTCCACTGAAACTTCAAG
GAGATCTGCTGTGGCTTTG
Found at i:81948651 original size:42 final size:42
Alignment explanation
Indices: 81948484--81948649 Score: 271
Period size: 42 Copynumber: 4.0 Consensus size: 42
81948474 CGTGACTTCA
* *
81948484 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTCG
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTG
* *
81948526 CTTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTG
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTG
*
81948567 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTT
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTG
*
81948609 ATCAATTCCACTGGAACTTCAAGGAGATCTGCTGTGGCTTT
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTT
81948650 TAGCTGCTCC
Statistics
Matches: 115, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 37 0.32
42 78 0.68
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (42 bp):
ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTG
Found at i:81959248 original size:41 final size:41
Alignment explanation
Indices: 81959195--81959344 Score: 194
Period size: 41 Copynumber: 3.7 Consensus size: 41
81959185 CGCTGACTCA
* *
81959195 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
81959236 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* *
81959276 AAAAACCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
81959317 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
81959345 TAAACCCCGA
Statistics
Matches: 88, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 29 0.33
41 59 0.67
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:81961262 original size:14 final size:14
Alignment explanation
Indices: 81961220--81961262 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
81961210 CACAACTTAG
*
81961220 ACACACGGGCCCGT
1 ACACACGGGCCTGT
81961234 ACACACGGGCCTGT
1 ACACACGGGCCTGT
*
81961248 ACACACGGGCGTGT
1 ACACACGGGCCTGT
81961262 A
1 A
81961263 ACTTGTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.23, C:0.35, G:0.30, T:0.12
Consensus pattern (14 bp):
ACACACGGGCCTGT
Found at i:81962628 original size:21 final size:21
Alignment explanation
Indices: 81962604--81962645 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
81962594 CTGTAGGATA
81962604 GTTTTAGCAAGACCGGATTGT
1 GTTTTAGCAAGACCGGATTGT
81962625 GTTTTAGCAAGACCGGATTGT
1 GTTTTAGCAAGACCGGATTGT
81962646 CGAACCCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (21 bp):
GTTTTAGCAAGACCGGATTGT
Found at i:81974037 original size:47 final size:48
Alignment explanation
Indices: 81973919--81974047 Score: 179
Period size: 47 Copynumber: 2.7 Consensus size: 48
81973909 ATGCGATTGA
* * * *
81973919 TACCTTGATTTGGATATGGGCCATGGTATAGGTATTTCGGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTAATCCGGAGAGAAGT
* ***
81973967 TACCTTGATTTCGCTACAAGCCATGGTATAGGTAATCCGG-GAGAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTAATCCGGAGAGAAGT
81974014 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA
81974048 CTTATCGATT
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 36 0.52
48 33 0.48
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (48 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTAATCCGGAGAGAAGT
Found at i:81980724 original size:39 final size:40
Alignment explanation
Indices: 81980681--81980764 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
81980671 GTTTTAATAA
* * *
81980681 AAAAATGCCACTAAAAA-CGAGCATTAGCGTCGCTTCTAC
1 AAAAACGCCACTAAAAATCGAGCATAAGCGGCGCTTCTAC
* *
81980720 AAAAACGCCACTAAAAATCGAGCATAAGCGGCGCTTTTAG
1 AAAAACGCCACTAAAAATCGAGCATAAGCGGCGCTTCTAC
81980760 AAAAA
1 AAAAA
81980765 AACGCCGCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 16 0.41
40 23 0.59
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.18
Consensus pattern (40 bp):
AAAAACGCCACTAAAAATCGAGCATAAGCGGCGCTTCTAC
Found at i:81983973 original size:21 final size:21
Alignment explanation
Indices: 81983949--81983989 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
81983939 TAAAATTTGA
*
81983949 TTTAA-TATAAATATTTTAATG
1 TTTAATTAT-AATAGTTTAATG
81983970 TTTAATTATAATAGTTTAAT
1 TTTAATTATAATAGTTTAAT
81983990 TTGTCGTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
TTTAATTATAATAGTTTAATG
Found at i:81984745 original size:31 final size:31
Alignment explanation
Indices: 81984703--81984768 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
81984693 TGTATTTTTT
*
81984703 ATGCTAAATTTGCTGTTTTTGGTTGCATTTC
1 ATGCTAAATTTGCTGTTTTTGGTTGCATTTA
* * *
81984734 ATGCTATATTTGCTGTTTTTTGTTGGATTTA
1 ATGCTAAATTTGCTGTTTTTGGTTGCATTTA
81984765 ATGC
1 ATGC
81984769 ATGAAGGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.53
Consensus pattern (31 bp):
ATGCTAAATTTGCTGTTTTTGGTTGCATTTA
Found at i:81987974 original size:42 final size:42
Alignment explanation
Indices: 81987906--81988076 Score: 193
Period size: 42 Copynumber: 4.0 Consensus size: 42
81987896 ATGGAAATAT
* **
81987906 TTGACGATAGCTTCGGCTATACATTGGCACTTAATGTGCGAGA
1 TTGA-GATAGCTTCAGCTACGCATTGGCACTTAATGTGCGAGA
* * * *
81987949 TTGAGATAGCTTCGGCTACGTATTGGCACATAATGTGCAAGA
1 TTGAGATAGCTTCAGCTACGCATTGGCACTTAATGTGCGAGA
* * *
81987991 TCT-AGATAGCTTCAGCTATGCATTGGCACTTAGTGTGC-ATAA
1 T-TGAGATAGCTTCAGCTACGCATTGGCACTTAATGTGCGA-GA
* *
81988033 TTGAGATAGCTTCAGCTACGTATTGGCACTTAGTGTGCGAGA
1 TTGAGATAGCTTCAGCTACGCATTGGCACTTAATGTGCGAGA
81988075 TT
1 TT
81988077 TCTGACTAAC
Statistics
Matches: 110, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
41 2 0.02
42 102 0.93
43 6 0.05
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTGAGATAGCTTCAGCTACGCATTGGCACTTAATGTGCGAGA
Found at i:81988016 original size:84 final size:84
Alignment explanation
Indices: 81987911--81988075 Score: 242
Period size: 84 Copynumber: 2.0 Consensus size: 84
81987901 AATATTTGAC
* * *
81987911 GATAGCTTCGGCTATACATTGGCACTTAATGTGCGA-GATTGAGATAGCTTCGGCTACGTATTGG
1 GATAGCTTCAGCTATACATTGGCACTTAATGTGC-ATAATTGAGATAGCTTCAGCTACGTATTGG
81987975 CACATAATGTGCAAGATCTA
65 CACATAATGTGCAAGATCTA
* *
81987995 GATAGCTTCAGCTATGCATTGGCACTTAGTGTGCATAATTGAGATAGCTTCAGCTACGTATTGGC
1 GATAGCTTCAGCTATACATTGGCACTTAATGTGCATAATTGAGATAGCTTCAGCTACGTATTGGC
* * *
81988060 ACTTAGTGTGCGAGAT
66 ACATAATGTGCAAGAT
81988076 TTCTGACTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
83 1 0.01
84 71 0.99
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (84 bp):
GATAGCTTCAGCTATACATTGGCACTTAATGTGCATAATTGAGATAGCTTCAGCTACGTATTGGC
ACATAATGTGCAAGATCTA
Found at i:81988177 original size:32 final size:32
Alignment explanation
Indices: 81988141--81988207 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
81988131 TAAGTATGAG
* *
81988141 ATTGGTATGAGATGGTACAGGTATGTACAGAA
1 ATTGGTACGAGATGGTACAGGTATGTACAAAA
*
81988173 ATTGGTACGAGATGGTATAGGTATGTACAAAA
1 ATTGGTACGAGATGGTACAGGTATGTACAAAA
81988205 ATT
1 ATT
81988208 CAATTGAGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (32 bp):
ATTGGTACGAGATGGTACAGGTATGTACAAAA
Found at i:81989053 original size:61 final size:60
Alignment explanation
Indices: 81988920--81989085 Score: 169
Period size: 60 Copynumber: 2.7 Consensus size: 60
81988910 ACTAGGCCTA
* * *
81988920 AGCCCTATTCAGAAATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCTAT
1 AGCCCTATT-ACAAATCAGAGTAT-ATTGGGCC-TAGCCCATATCAATATCAATCTGGGCTAT
* * *
81988982 AGCCC-CTTACAATATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAATCTGGG-TCGT
1 AGCCCTATTACAA-ATCAGAGTATATTGGGCCTAGCCCATATCAATATCAATCTGGGCT-AT
** *
81989042 AGCCCTATTACAAGGC-GAGATATATTGGGCCTTGCCCATATCAA
1 AGCCCTATTACAAATCAGAG-TATATTGGGCCTAGCCCATATCAA
81989086 CATAGTTGGG
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
59 4 0.05
60 55 0.62
61 23 0.26
62 6 0.07
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (60 bp):
AGCCCTATTACAAATCAGAGTATATTGGGCCTAGCCCATATCAATATCAATCTGGGCTAT
Found at i:81994130 original size:29 final size:29
Alignment explanation
Indices: 81994098--81994175 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
81994088 ATACCCTCCG
** *
81994098 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
81994127 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
81994156 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
81994176 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Done.