Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 274 of 328
Found at i:81996841 original size:48 final size:48
Alignment explanation
Indices: 81996787--81997103 Score: 300
Period size: 48 Copynumber: 6.6 Consensus size: 48
81996777 TGAGATCCCA
* *
81996787 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCCT-G
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGA-GCTAG
* ** * * * *
81996835 TATAAGACCATGTCTGTAACATGGCATCGGCATTGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCTAG
* * *
81996883 TGTAAGACTATGTCTGGGACATGGCATCAGCCA-C-ATTATGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GGCATCGA-GATGAGAGCTAG
* * *
81996931 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGAAGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCTAG
* * * *
81996979 TGTAAGACCATGTCTGGGACATGGCATCGGCTTCGACG-TGTGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GATGAGAGCTAG
* * * * * ** ** *
81997027 TATAAGACCATGTCTGGGACATGGTATCGACATTGATATGTTATTTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCTAG
*
81997075 TGTAAGACCATGTCTGGGACATGACATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
81997104 TTATGAGACA
Statistics
Matches: 217, Mismatches: 45, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
47 5 0.02
48 207 0.95
49 5 0.02
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCTAG
Found at i:81997040 original size:144 final size:144
Alignment explanation
Indices: 81996787--81997050 Score: 361
Period size: 144 Copynumber: 1.8 Consensus size: 144
81996777 TGAGATCCCA
* * *
81996787 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCCTGTATAAGACCATGTCTGT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAAGAGATCCTGTATAAGACCATGTCTGG
* * * * * *
81996852 AACATGGCATCGGCATTGATATGTGTGCTAGTGTAAGACTATGTCTGGGACATGGCATCAGCCAC
66 AACATGGCATCGGCATTGACATGTGAGCCAATATAAGACCATGTCTGGGACATGGCATCAGCCAC
81996917 ATTATGAGAGCTAG
131 ATTATGAGAGCTAG
* * * *
81996931 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGAAGAGA-GCTAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAAGAGATCCT-GTATAAGACCATGTCTG
* *
81996995 GGACATGGCATCGGC-TTCGACGTGTGAGCCAATATAAGACCATGTCTGGGACATGG
65 GAACATGGCATCGGCATT-GACATGTGAGCCAATATAAGACCATGTCTGGGACATGG
81997051 TATCGACATT
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
143 4 0.04
144 99 0.96
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAAGAGATCCTGTATAAGACCATGTCTGG
AACATGGCATCGGCATTGACATGTGAGCCAATATAAGACCATGTCTGGGACATGGCATCAGCCAC
ATTATGAGAGCTAG
Found at i:81997078 original size:144 final size:143
Alignment explanation
Indices: 81996787--81997111 Score: 356
Period size: 144 Copynumber: 2.3 Consensus size: 143
81996777 TGAGATCCCA
* * * * *
81996787 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCCTGTATAAGACCATGTCTGT
1 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGAAGAGATCCTGTATAAGACCATGTCTGG
* * * * * *
81996852 AACATGGCATCGGCATTGATATGTGTGCTAGTGTAAGACTATGTCTGGGACATGGCATCAGCCAC
66 AACATGGCATCGGCATTGACATGTGAGCCAATATAAGACCATGTCTGGGACATGGCATCAG-CAC
81996917 ATTATGAGAGCTAG
130 ATTATGAGAGCTAG
* *
81996931 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGAAGAGA-GCTAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGAAGAGATCCT-GTATAAGACCATGTCTG
* * *
81996995 GGACATGGCATCGGC-TTCGACGTGTGAGCCAATATAAGACCATGTCTGGGACATGGTATC-G-A
65 GAACATGGCATCGGCATT-GACATGTGAGCCAATATAAGACCATGTCTGGGACATGGCATCAGCA
** *
81997057 CATTGAT-ATGTTATTTCG
129 CATT-ATGA-G--AGCTAG
* *
81997075 TGTAAGACCATGTCTGGGACATGACATCGTTA-TGAGA
1 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGA
81997112 CATCGTGTAA
Statistics
Matches: 154, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
141 6 0.04
142 3 0.02
143 10 0.06
144 135 0.88
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (143 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGAAGAGATCCTGTATAAGACCATGTCTGG
AACATGGCATCGGCATTGACATGTGAGCCAATATAAGACCATGTCTGGGACATGGCATCAGCACA
TTATGAGAGCTAG
Found at i:81997103 original size:96 final size:95
Alignment explanation
Indices: 81996787--81997103 Score: 343
Period size: 96 Copynumber: 3.3 Consensus size: 95
81996777 TGAGATCCCA
* * * *
81996787 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCCTGTATAAGACCATGTCTGT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAG-TGAGAGCCAGTATAAGACCATGTCTGG
*
81996852 AACATGGCATCGGCATTGATATGTGT-GCTAG
65 GACATGGCATCGGCATTGATATGT-TAGCTAG
* * * * *
81996883 TGTAAGACTATGTCTGGGACATGGCATCAGCCA-C-ATTATGAGAGCTAGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATC-GGCATCGA--GTGAGAGCCAGTATAAGACCATGTCT
* * * **
81996946 GGGACATGGCATCGGTATTGAGAAGAGAGCTAG
63 GGGACATGGCATCGGCATTGATATGTTAGCTAG
* * *
81996979 TGTAAGACCATGTCTGGGACATGGCATCGGCTTCGACGTGTGAGCCAATATAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GTGAGAGCCAGTATAAGACCATGTCTGG
* * ** *
81997044 GACATGGTATCGACATTGATATGTTATTTCG
65 GACATGGCATCGGCATTGATATGTTAGCTAG
*
81997075 TGTAAGACCATGTCTGGGACATGACATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
81997104 TTATGAGACA
Statistics
Matches: 180, Mismatches: 35, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
95 3 0.02
96 173 0.96
97 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGTGAGAGCCAGTATAAGACCATGTCTGGG
ACATGGCATCGGCATTGATATGTTAGCTAG
Found at i:82001293 original size:42 final size:42
Alignment explanation
Indices: 82001227--82001390 Score: 188
Period size: 42 Copynumber: 3.9 Consensus size: 42
82001217 AATTCGACGC
* * *
82001227 TAGCTTCAGCTATGCATTGGCACTTAATTTGCGAGATTGAGA
1 TAGCTTCGGCTATGTATTGGCACTTAATGTGCGAGATTGAGA
* * * **
82001269 TAGCTTTGGCTATGTATTGACACTTAGTGTATGAGATTGAGA
1 TAGCTTCGGCTATGTATTGGCACTTAATGTGCGAGATTGAGA
* *
82001311 TAGCTTCGGCTAT-TCATTGGCACTTAGTGTGTGTA-ATTGAGA
1 TAGCTTCGGCTATGT-ATTGGCACTTAATGTGCG-AGATTGAGA
* *
82001353 TAGCTTCGGCTACGTATTGGCACTTAATGTTCGAGATT
1 TAGCTTCGGCTATGTATTGGCACTTAATGTGCGAGATT
82001391 TCTAAGCAGC
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.02
42 99 0.96
43 2 0.02
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.37
Consensus pattern (42 bp):
TAGCTTCGGCTATGTATTGGCACTTAATGTGCGAGATTGAGA
Found at i:82001389 original size:84 final size:84
Alignment explanation
Indices: 82001227--82001390 Score: 215
Period size: 84 Copynumber: 2.0 Consensus size: 84
82001217 AATTCGACGC
* * *
82001227 TAGCTTCAGCTATGCATTGGCACTTAATTTGCGAGATTGAGATAGCTTTGGCTATGTATTGACAC
1 TAGCTTCAGCTATGCATTGGCACTTAATGTGCGAGATTGAGATAGCTTCGGCTACGTATTGACAC
*
82001292 TTAGTGTATGAGATTGAGA
66 TTAATGTATGAGATTGAGA
* * * * *
82001311 TAGCTTCGGCTATTCATTGGCACTTAGTGTGTGTA-ATTGAGATAGCTTCGGCTACGTATTGGCA
1 TAGCTTCAGCTATGCATTGGCACTTAATGTGCG-AGATTGAGATAGCTTCGGCTACGTATTGACA
82001375 CTTAATGT-TCGAGATT
65 CTTAATGTAT-GAGATT
82001391 TCTAAGCAGC
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
83 1 0.01
84 67 0.97
85 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.37
Consensus pattern (84 bp):
TAGCTTCAGCTATGCATTGGCACTTAATGTGCGAGATTGAGATAGCTTCGGCTACGTATTGACAC
TTAATGTATGAGATTGAGA
Found at i:82001495 original size:32 final size:32
Alignment explanation
Indices: 82001459--82001521 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
82001449 TCTGAGATTA
* *
82001459 GTACGAGATGGTGCAGGTATGTACGGAAATTG
1 GTACGAGATGGTACAGGTATGTACGAAAATTG
*
82001491 GTACGAGATGGTATAGGTATGTACGAAAATT
1 GTACGAGATGGTACAGGTATGTACGAAAATT
82001522 CAGTTGAGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.08, G:0.33, T:0.27
Consensus pattern (32 bp):
GTACGAGATGGTACAGGTATGTACGAAAATTG
Found at i:82003678 original size:14 final size:14
Alignment explanation
Indices: 82003638--82003696 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
82003628 CTAGATACAT
82003638 TATATTTTATTATA
1 TATATTTTATTATA
*
82003652 TA-ACATTTATTATA
1 TATA-TTTTATTATA
* *
82003666 TATATTTTTTTATG
1 TATATTTTATTATA
*
82003680 T-TATGTATATTATA
1 TATAT-TTTATTATA
82003694 TAT
1 TAT
82003697 TATCTATCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
13 4 0.12
14 28 0.82
15 2 0.06
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (14 bp):
TATATTTTATTATA
Found at i:82003711 original size:28 final size:28
Alignment explanation
Indices: 82003680--82003739 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
82003670 TTTTTTTATG
*
82003680 TTATGTATATTATATATTA-TCTATCATA
1 TTATATATATTATATATTACTC-ATCATA
* * *
82003708 TTATATATGTTTTATATTACTCATTATA
1 TTATATATATTATATATTACTCATCATA
82003736 TTAT
1 TTAT
82003740 TTAATTTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 25 0.93
29 2 0.07
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (28 bp):
TTATATATATTATATATTACTCATCATA
Found at i:82004055 original size:28 final size:28
Alignment explanation
Indices: 82004024--82004087 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
82004014 TTTTGACAAT
*
82004024 TACTCACTTTATTTTATAT-TTTTATATA
1 TACTCA-TTTATCTTATATATTTTATATA
* *
82004052 TACT-AATTCTCTTATATATTTTATATA
1 TACTCATTTATCTTATATATTTTATATA
82004079 TA-TCATTTA
1 TACTCATTTA
82004088 CGTATTAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
26 10 0.34
27 15 0.52
28 4 0.14
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (28 bp):
TACTCATTTATCTTATATATTTTATATA
Found at i:82005516 original size:30 final size:30
Alignment explanation
Indices: 82005480--82005547 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
82005470 CGTATGGCTT
82005480 GACCGTGTTTGACATATGGCCTTGGTACAC
1 GACCGTGTTTGACATATGGCCTTGGTACAC
*
82005510 GACCGTGTTTGACATATGGCCTTGGTACAT
1 GACCGTGTTTGACATATGGCCTTGGTACAC
82005540 GACCGTGT
1 GACCGTGT
82005548 GTCCCTTGGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (30 bp):
GACCGTGTTTGACATATGGCCTTGGTACAC
Found at i:82006742 original size:19 final size:19
Alignment explanation
Indices: 82006718--82006756 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
82006708 CAAACAGAAC
82006718 AGTAAACCATTCAATTCAT
1 AGTAAACCATTCAATTCAT
82006737 AGTAAACCATTCAATTCAT
1 AGTAAACCATTCAATTCAT
82006756 A
1 A
82006757 CATCAATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.31
Consensus pattern (19 bp):
AGTAAACCATTCAATTCAT
Found at i:82007793 original size:40 final size:40
Alignment explanation
Indices: 82007741--82008066 Score: 366
Period size: 40 Copynumber: 8.1 Consensus size: 40
82007731 AACAAACTAA
* ** *
82007741 ACAGAAGTTCATAAGAGCTAATCCAACTAAAAC-TGGCCAA
1 ACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT-GCCAG
*
82007781 ACATAAGCTCATAAGAGCTAATCCAACCGAAACATGCCAG
1 ACAGAAGCTCATAAGAGCTAATCCAACCGAAACATGCCAG
* **
82007821 ACAAAAGCTCATAAGAGCTAATCCAACCGAAACACACCAG
1 ACAGAAGCTCATAAGAGCTAATCCAACCGAAACATGCCAG
*
82007861 ACAGAAGTTCATAAGAGCTAATCCAACCGAAACATGCCAG
1 ACAGAAGCTCATAAGAGCTAATCCAACCGAAACATGCCAG
* ** * *
82007901 ATAGAAGCTCATAAGAGCTAATCCAACTAAAAAAATGCTAG
1 ACAGAAGCTCATAAGAGCTAATCCAAC-CGAAACATGCCAG
* * * * **
82007942 ATAGAAGTTCACAGGAGCTAATCCAACCGAAACATGCTTG
1 ACAGAAGCTCATAAGAGCTAATCCAACCGAAACATGCCAG
* * * * * *
82007982 GCAGAAGCTCACAAGAGCTAATCCAATCAAAACACGCCGG
1 ACAGAAGCTCATAAGAGCTAATCCAACCGAAACATGCCAG
* **
82008022 ACAGAAGCTCATAAGAGCTAAGCCAACCGAAACACACCAG
1 ACAGAAGCTCATAAGAGCTAATCCAACCGAAACATGCCAG
82008062 ACAGA
1 ACAGA
82008067 GAGTATAACA
Statistics
Matches: 243, Mismatches: 41, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
40 209 0.86
41 34 0.14
ACGTcount: A:0.44, C:0.25, G:0.17, T:0.14
Consensus pattern (40 bp):
ACAGAAGCTCATAAGAGCTAATCCAACCGAAACATGCCAG
Found at i:82008027 original size:161 final size:160
Alignment explanation
Indices: 82007743--82008055 Score: 421
Period size: 161 Copynumber: 1.9 Consensus size: 160
82007733 CAAACTAAAC
* * * *
82007743 AGAAGTTCATAAGAGCTAATCCAACTAAAACTGGCCAAACATAAGCTCATAAGAGCTAATCCAAC
1 AGAAGCTCATAAGAGCTAATCCAACTAAAAATGGCCAAACAGAAGCTCACAAGAGCTAATCCAAC
* * *
82007808 CGAAACATGCCAGACAAAAGCTCATAAGAGCTAATCCAACCGAAACACACCAGACAGAAGTTCAT
66 CGAAACATGCCAGACAAAAGCTCACAAGAGCTAATCCAACCAAAACACACCAGACAGAAGCTCAT
*
82007873 AAGAGCTAATCCAACCGAAACATGCCAGAT
131 AAGAGCTAAGCCAACCGAAACATGCCAGAT
* * * * *
82007903 AGAAGCTCATAAGAGCTAATCCAACTAAAAAAAT-GCTAGATAGAAGTTCACAGGAGCTAATCCA
1 AGAAGCTCATAAGAGCTAATCCAACT--AAAAATGGCCAAACAGAAGCTCACAAGAGCTAATCCA
** * * * * *
82007967 ACCGAAACATGCTTGGCAGAAGCTCACAAGAGCTAATCCAATCAAAACACGCCGGACAGAAGCTC
64 ACCGAAACATGCCAGACAAAAGCTCACAAGAGCTAATCCAACCAAAACACACCAGACAGAAGCTC
82008032 ATAAGAGCTAAGCCAACCGAAACA
129 ATAAGAGCTAAGCCAACCGAAACA
82008056 CACCAGACAG
Statistics
Matches: 131, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
160 25 0.19
161 101 0.77
162 5 0.04
ACGTcount: A:0.44, C:0.25, G:0.17, T:0.15
Consensus pattern (160 bp):
AGAAGCTCATAAGAGCTAATCCAACTAAAAATGGCCAAACAGAAGCTCACAAGAGCTAATCCAAC
CGAAACATGCCAGACAAAAGCTCACAAGAGCTAATCCAACCAAAACACACCAGACAGAAGCTCAT
AAGAGCTAAGCCAACCGAAACATGCCAGAT
Found at i:82023566 original size:5 final size:5
Alignment explanation
Indices: 82023556--82023583 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
82023546 ATAAAAACCA
82023556 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
82023584 TATCAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:82025804 original size:22 final size:21
Alignment explanation
Indices: 82025757--82025805 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
82025747 TGCTCAAGTG
* *
82025757 CTCAAGAATGTTTAGATTCAT
1 CTCAATAATGTTTAGAATCAT
82025778 CTCAATAATGTATTAGAAT-AT
1 CTCAATAATGT-TTAGAATCAT
82025799 CATCAAT
1 C-TCAAT
82025806 GAATACAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (21 bp):
CTCAATAATGTTTAGAATCAT
Found at i:82029577 original size:41 final size:41
Alignment explanation
Indices: 82029525--82029679 Score: 193
Period size: 41 Copynumber: 3.8 Consensus size: 41
82029515 TTGTATATCA
* *
82029525 ATCTCGCACACTAAATGCCATACATAGCCAAAGCTATCTTG
1 ATCTCGCACACTAAATGCCATACATAGCCGAAGCTATCTCG
* * *
82029566 ATCTCGTACACTAAAGGTCATACATAGCCGAAGCTATCTCG
1 ATCTCGCACACTAAATGCCATACATAGCCGAAGCTATCTCG
* * * *
82029607 ATCTCGTACATTAAGTGCCATACATAGCCGAAGCTATCTCA
1 ATCTCGCACACTAAATGCCATACATAGCCGAAGCTATCTCG
* * * *
82029648 ATCTCGCACACTAAGTGCTACACATAGTCGAA
1 ATCTCGCACACTAAATGCCATACATAGCCGAA
82029680 TTTTCGTTGA
Statistics
Matches: 99, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 99 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (41 bp):
ATCTCGCACACTAAATGCCATACATAGCCGAAGCTATCTCG
Found at i:82032394 original size:82 final size:82
Alignment explanation
Indices: 82032257--82032429 Score: 337
Period size: 82 Copynumber: 2.1 Consensus size: 82
82032247 ACTTCTGAAC
82032257 TTCACATATTTGCTGGAAAAAATATCGGTTTAGCTTTTAACTCTGCTAGAATCGAACCATCATCA
1 TTCACATATTTGCTGGAAAAAATATCGGTTTAGCTTTTAACTCTGCTAGAATCGAACCATCATCA
82032322 GACAAAGTCAGACAAAG
66 GACAAAGTCAGACAAAG
*
82032339 TTCACATATTTGCTGGAAAAAATATCGGTTTAGCTTTTAACTCTGCTATAATCGAACCATCATCA
1 TTCACATATTTGCTGGAAAAAATATCGGTTTAGCTTTTAACTCTGCTAGAATCGAACCATCATCA
82032404 GACAAAGTCAGACAAAG
66 GACAAAGTCAGACAAAG
82032421 TTCACATAT
1 TTCACATAT
82032430 CTGCGACTAC
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 90 1.00
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.29
Consensus pattern (82 bp):
TTCACATATTTGCTGGAAAAAATATCGGTTTAGCTTTTAACTCTGCTAGAATCGAACCATCATCA
GACAAAGTCAGACAAAG
Found at i:82036217 original size:17 final size:18
Alignment explanation
Indices: 82036195--82036231 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
82036185 TCAAAATTTA
82036195 TTATAAAATTTAT-TATT
1 TTATAAAATTTATATATT
*
82036212 TTATAATATTTATATATT
1 TTATAAAATTTATATATT
82036230 TT
1 TT
82036232 TCAACAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATAAAATTTATATATT
Found at i:82036893 original size:19 final size:18
Alignment explanation
Indices: 82036865--82036904 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
82036855 ATGAAATTTT
82036865 AATTAGTATTATGAGATAA
1 AATTAGTATTATGAGA-AA
* *
82036884 AATTATTATTATTAGAAA
1 AATTAGTATTATGAGAAA
82036902 AAT
1 AAT
82036905 ATTTCTGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (18 bp):
AATTAGTATTATGAGAAA
Found at i:82042374 original size:41 final size:41
Alignment explanation
Indices: 82042260--82042366 Score: 187
Period size: 41 Copynumber: 2.6 Consensus size: 41
82042250 GCAAAAGATG
*
82042260 TATCTCAATCTCACACACTAAGTGCCATACATAGCCGAAGC
1 TATCTCGATCTCACACACTAAGTGCCATACATAGCCGAAGC
*
82042301 TATCTTGATCTCACACACTAAGTGCCATACATAGCCGAAGC
1 TATCTCGATCTCACACACTAAGTGCCATACATAGCCGAAGC
*
82042342 TATCTCGATCTCGCACACTAAGTGC
1 TATCTCGATCTCACACACTAAGTGC
82042367 TACACATATC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (41 bp):
TATCTCGATCTCACACACTAAGTGCCATACATAGCCGAAGC
Found at i:82048170 original size:68 final size:68
Alignment explanation
Indices: 82047986--82048178 Score: 233
Period size: 68 Copynumber: 2.8 Consensus size: 68
82047976 ACTGTAGCCC
* * * * * * * * * *
82047986 AGCTATGCTCTTAGACAATATAAACCCATGCTTACCGTCCTGGTGAACTTTATATGTTTTCATAA
1 AGCTATGATCTTACACAGTATAAACTCATGTTTACTGTCCTGATGGACTCTATATGTTGTCATAA
82048051 ACT
66 ACT
* * *
82048054 AGCTATGATCTTACACAGTATAAACTTATGTTTATTGTCCTGTTGGACTCTATATGTTGTCATAA
1 AGCTATGATCTTACACAGTATAAACTCATGTTTACTGTCCTGATGGACTCTATATGTTGTCATAA
*
82048119 CCT
66 ACT
* * *
82048122 AGCTATGGTCTTACACAGTATAAACTCATGTTTACTGTCCTGACGGACTCCATATGT
1 AGCTATGATCTTACACAGTATAAACTCATGTTTACTGTCCTGATGGACTCTATATGT
82048179 AACAGCCCAA
Statistics
Matches: 106, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 106 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (68 bp):
AGCTATGATCTTACACAGTATAAACTCATGTTTACTGTCCTGATGGACTCTATATGTTGTCATAA
ACT
Found at i:82049945 original size:63 final size:66
Alignment explanation
Indices: 82049765--82049945 Score: 183
Period size: 68 Copynumber: 2.8 Consensus size: 66
82049755 AGATGGATGT
** * * * * *
82049765 AGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACGAGACATTATGA
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGCTACGAGA-ATTATAA
82049830 TG
65 TG
* * * *
82049832 TAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAAAGAGCTACGAG-A-TA-A
1 -AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGT-GTACAAGAGAGCTACGAGAATTATA
82049893 ACTG
64 A-TG
*
82049897 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGC
82049946 CAAAATTATG
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 42 0.45
64 1 0.01
65 4 0.04
66 1 0.01
68 44 0.47
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (66 bp):
AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGCTACGAGAATTATAAT
G
Found at i:82059643 original size:24 final size:24
Alignment explanation
Indices: 82059610--82059675 Score: 114
Period size: 24 Copynumber: 2.8 Consensus size: 24
82059600 TCGTTCTTTG
* *
82059610 GTAAATGATGAATAGACGGAAAAT
1 GTAAAGGATGAATTGACGGAAAAT
82059634 GTAAAGGATGAATTGACGGAAAAT
1 GTAAAGGATGAATTGACGGAAAAT
82059658 GTAAAGGATGAATTGACG
1 GTAAAGGATGAATTGACG
82059676 ATAATTTACC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.45, C:0.05, G:0.29, T:0.21
Consensus pattern (24 bp):
GTAAAGGATGAATTGACGGAAAAT
Found at i:82062285 original size:10 final size:10
Alignment explanation
Indices: 82062256--82062294 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
82062246 TTAAATTCTA
*
82062256 AAAGATATAT
1 AAAGATAAAT
82062266 ACAA-ATAAAT
1 A-AAGATAAAT
82062276 AAAGATAAAT
1 AAAGATAAAT
82062286 AAAGATAAA
1 AAAGATAAA
82062295 AGCTAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:82065100 original size:42 final size:42
Alignment explanation
Indices: 82064988--82065136 Score: 131
Period size: 43 Copynumber: 3.5 Consensus size: 42
82064978 TGTGTTTTCT
* * * * *
82064988 TGTACGACCACGTCTGGGACATTGGCATCG-ACTTATGCTTTACG
1 TGTAAGACCAAGTCTGGGACAATGGCATCGTA-TT-TGATTT-TG
*
82065032 TGTAAGACCAAGTCTAGGA-AATTGGCATCGTATTTGATTTTG
1 TGTAAGACCAAGTCTGGGACAA-TGGCATCGTATTTGATTTTG
** * *
82065074 TGTAAGACCCTGTCTGGGACAATGGCATCGATATTTGATTATA
1 TGTAAGACCAAGTCTGGGACAATGGCATCG-TATTTGATTTTG
* *
82065117 TGTAAGACCACGTCTAGGAC
1 TGTAAGACCAAGTCTGGGAC
82065137 GTTGGGATTG
Statistics
Matches: 87, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 25 0.29
43 35 0.40
44 26 0.30
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCAAGTCTGGGACAATGGCATCGTATTTGATTTTG
Found at i:82071179 original size:50 final size:49
Alignment explanation
Indices: 82071066--82071254 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
82071056 TGAGGTCGCA
* * * * ** * *
82071066 TGTGTAGTACTATGTACAAGCTACTATGCATACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACG
* **
82071117 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
82071167 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * *
82071216 TGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
82071255 GCTTTGACTA
Statistics
Matches: 115, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
49 39 0.34
50 46 0.40
51 30 0.26
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:82084088 original size:25 final size:25
Alignment explanation
Indices: 82084059--82084106 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
82084049 TTATAATATG
* *
82084059 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
82084084 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
82084107 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:82084193 original size:20 final size:20
Alignment explanation
Indices: 82084143--82084193 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
82084133 ATTTTGATAA
* *
82084143 ACATGATATATATGATATGC
1 ACATGACATGTATGATATGC
82084163 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
82084183 ACATGAGATGT
1 ACATGACATGT
82084194 TCATAAATGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:82084318 original size:47 final size:45
Alignment explanation
Indices: 82084240--82084393 Score: 251
Period size: 47 Copynumber: 3.4 Consensus size: 45
82084230 AGGAAGTGCA
82084240 AAAGGGCTTATG-CCCAGTATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTATCAAAAGGGCTTA-GCCCCAGTTATT
82084285 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAG-TATCAAAAGGGCTTA-GCCCCAGTTATT
82084332 AAAGGGCTTATGCCCCAG-AT-AAAAGGGCTTAGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTATCAAAAGGGCTTAGCCCCAGTTATT
*
82084375 AAAGGGCTTTTGCCCCAGT
1 AAAGGGCTTATGCCCCAGT
82084394 TATTAAAGAG
Statistics
Matches: 104, Mismatches: 2, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
43 29 0.28
44 11 0.11
45 14 0.13
46 5 0.05
47 45 0.43
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (45 bp):
AAAGGGCTTATGCCCCAGTATCAAAAGGGCTTAGCCCCAGTTATT
Found at i:82084416 original size:24 final size:23
Alignment explanation
Indices: 82084240--82084420 Score: 230
Period size: 23 Copynumber: 8.0 Consensus size: 23
82084230 AGGAAGTGCA
*
82084240 AAAGGGCTTATG-CCCAG-TATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
82084262 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
82084285 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
82084309 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
82084332 AAAGGGCTTATGCCCCAG--ATA
1 AAAGGGCTTATGCCCCAGTTATT
82084353 AAAGGGCTTA-GCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
82084375 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
82084398 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
82084421 ATGATAAAGC
Statistics
Matches: 141, Mismatches: 10, Indels: 14
0.85 0.06 0.08
Matches are distributed among these distances:
20 7 0.05
21 12 0.09
22 22 0.16
23 64 0.45
24 36 0.26
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:82084417 original size:90 final size:92
Alignment explanation
Indices: 82084240--82084420 Score: 273
Period size: 90 Copynumber: 2.0 Consensus size: 92
82084230 AGGAAGTGCA
82084240 AAAGGGCTTATGCCCAGTATCAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTT
1 AAAGGGCTTATGCCCAGTATCAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTT
*
82084305 ATCAAAAGGGCTTATGCCCCAGTTATT
66 ATCAAAAGGGCTTAGGCCCCAGTTATT
*
82084332 AAAGGGCTTATGCCCCAG-AT-AAAAGGGCTTA-GCCCCAGTTATTAAAGGGCTTTTGCCCCAGT
1 AAAGGGCTTATG-CCCAGTATCAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGT
*
82084394 TAT-TAAAGAGGC-TAGGCCTCCAGTTAT
65 TATCAAAAG-GGCTTAGGCC-CCAGTTAT
82084421 ATGATAAAGC
Statistics
Matches: 83, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
89 9 0.11
90 44 0.53
91 11 0.13
92 14 0.17
93 5 0.06
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (92 bp):
AAAGGGCTTATGCCCAGTATCAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTT
ATCAAAAGGGCTTAGGCCCCAGTTATT
Found at i:82086248 original size:42 final size:42
Alignment explanation
Indices: 82086143--82086309 Score: 165
Period size: 43 Copynumber: 3.9 Consensus size: 42
82086133 CAATATGTGT
* * * * *
82086143 TTTCGTGTAAAACCACGTCTAGGATATTAGCATC-AACTTATGA
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTA-TT-TGA
82086186 TTTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGA
* * *
82086229 TTTCGTGTAAGACCCTGTCTGGGACAATGGCATCGATATTTGA
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATCG-TATTTGA
* * * * * *
82086272 TTACATGTAAGACCATGTATGGGACTTTGGCATTGTAT
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTAT
82086310 GAGCTTTCCA
Statistics
Matches: 106, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.30
43 44 0.42
44 29 0.27
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGA
Found at i:82089769 original size:10 final size:11
Alignment explanation
Indices: 82089754--82089823 Score: 78
Period size: 11 Copynumber: 6.8 Consensus size: 11
82089744 ATTTTGATAT
*
82089754 ACATGATTTG-
1 ACATGATATGC
82089764 ACATGATATGC
1 ACATGATATGC
82089775 ACATGATATG-
1 ACATGATATGC
*
82089785 -TATGATATGC
1 ACATGATATGC
82089795 ACATGATATG-
1 ACATGATATGC
*
82089805 -TATGATATGC
1 ACATGATATGC
82089815 ACATGATAT
1 ACATGATAT
82089824 ATTCATATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
9 16 0.32
10 9 0.18
11 25 0.50
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (11 bp):
ACATGATATGC
Found at i:82089791 original size:20 final size:20
Alignment explanation
Indices: 82089766--82089823 Score: 116
Period size: 20 Copynumber: 2.9 Consensus size: 20
82089756 ATGATTTGAC
82089766 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
82089786 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
82089806 ATGATATGCACATGATAT
1 ATGATATGCACATGATAT
82089824 ATTCATATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:82089905 original size:25 final size:25
Alignment explanation
Indices: 82089869--82089963 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
82089859 GAGGAAGTGC
82089869 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
82089894 AAAAGGGATTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
82089919 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
82089944 AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
82089964 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:82090278 original size:31 final size:30
Alignment explanation
Indices: 82090210--82090303 Score: 154
Period size: 29 Copynumber: 3.1 Consensus size: 30
82090200 TGATATGAAT
*
82090210 TATGAATTATGAAAAGGCTTCGGCCCAGTA
1 TATGACTTATGAAAAGGCTTCGGCCCAGTA
82090240 -ATGACTTATGAAAAGGCTTCGGCCCAGTAA
1 TATGACTTATGAAAAGGCTTCGGCCCAGT-A
*
82090270 TATGACTTATGAAAAGGCTTCGGCCCAATA
1 TATGACTTATGAAAAGGCTTCGGCCCAGTA
82090300 TATG
1 TATG
82090304 TTGAGATTGA
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
29 27 0.45
30 6 0.10
31 27 0.45
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (30 bp):
TATGACTTATGAAAAGGCTTCGGCCCAGTA
Found at i:82097578 original size:28 final size:28
Alignment explanation
Indices: 82097510--82097609 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 28
82097500 GGCAAGATTG
* * *
82097510 GCACTAAGTGTGCG-GTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
82097539 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
82097567 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
82097596 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82097610 GATTCACTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 34 0.53
30 4 0.06
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:82101986 original size:29 final size:29
Alignment explanation
Indices: 82101925--82102023 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
82101915 AATGAGATTG
82101925 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
82101953 GCACTAAGTGTGCGAGTTTGAATTGCATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
82101982 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
82102010 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82102024 GACTTACTGT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
28 34 0.51
29 32 0.48
30 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:82106473 original size:29 final size:29
Alignment explanation
Indices: 82106462--82106533 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
82106452 TGTCCAGCTT
*
82106462 GCACACTTAGTGCCATATGTTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
82106491 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCAC
82106520 GCACACTTAGTGCC
1 GCACACTTAGTGCC
82106534 GATCTCATCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAC
Found at i:82106494 original size:58 final size:58
Alignment explanation
Indices: 82106403--82106533 Score: 147
Period size: 58 Copynumber: 2.3 Consensus size: 58
82106393 AATTTAAGCC
* * * * *
82106403 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTAT-TTGTCCAGCT
1 CGCACACTTAGTGCCATACCCTTCCAGCACGCACACCCAGTGCCATATATT-TCCAGCA
* *** **
82106461 TGCACACTTAGTGCCATATGTTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACCCTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
82106519 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
82106534 GATCTCATCA
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
58 58 0.97
59 2 0.03
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACCCTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:82111822 original size:11 final size:11
Alignment explanation
Indices: 82111806--82111830 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82111796 ATGCTATGAG
82111806 TGGAAACATGT
1 TGGAAACATGT
82111817 TGGAAACATGT
1 TGGAAACATGT
82111828 TGG
1 TGG
82111831 GTTAGTGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (11 bp):
TGGAAACATGT
Found at i:82113044 original size:29 final size:29
Alignment explanation
Indices: 82112983--82113081 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
82112973 AATGAGATTG
82112983 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
82113011 GCACTAAGTGTGCGAGTTTGAATTGCATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
82113040 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
82113068 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82113082 GACTTACTGT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
28 34 0.51
29 32 0.48
30 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:82114739 original size:25 final size:25
Alignment explanation
Indices: 82114709--82114759 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
82114699 CCCTTATAAT
* * *
82114709 GTGAAAATGACCTTTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
82114734 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
82114759 G
1 G
82114760 GTTTAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:82114822 original size:11 final size:10
Alignment explanation
Indices: 82114790--82114845 Score: 62
Period size: 11 Copynumber: 5.6 Consensus size: 10
82114780 CATGAGATTT
82114790 TGATAT-ACA
1 TGATATGACA
*
82114799 TGATTTGACA
1 TGATATGACA
82114809 TGATATGCACA
1 TGATATG-ACA
*
82114820 TGATATG-TA
1 TGATATGACA
82114829 TGATATGCACA
1 TGATATG-ACA
82114840 TGATAT
1 TGATAT
82114846 ATTCATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 13 0.33
10 9 0.23
11 17 0.44
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:82114833 original size:20 final size:20
Alignment explanation
Indices: 82114808--82114845 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
82114798 ATGATTTGAC
82114808 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
82114828 ATGATATGCACATGATAT
1 ATGATATGCACATGATAT
82114846 ATTCATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:82114925 original size:25 final size:25
Alignment explanation
Indices: 82114891--82114985 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
82114881 GAGGAAGTGC
* *
82114891 AAAAAGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
82114916 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
* *
82114941 AAAAGGGCTTTGCCTCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCG
82114966 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
82114986 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:82115010 original size:50 final size:51
Alignment explanation
Indices: 82114905--82115010 Score: 137
Period size: 50 Copynumber: 2.1 Consensus size: 51
82114895 AGGCTTTGCC
* **
82114905 CCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCGAAAAGGGCTTTGCCT
1 CCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCGAAAAGGGCTAGGCCT
* *
82114956 -CAGTTTATCAAAAAGGGCTTTGCCCCAG-TTAT-TAAAAGAGGCTAGGCCT
1 CCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCGAAAAG-GGCTAGGCCT
82115005 CCAGTT
1 CCAGTT
82115011 ATATAATAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.10
49 12 0.25
50 31 0.65
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (51 bp):
CCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTATCGAAAAGGGCTAGGCCT
Found at i:82115459 original size:12 final size:12
Alignment explanation
Indices: 82115442--82115467 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82115432 CGTAATATGG
82115442 TCACTATGAATT
1 TCACTATGAATT
82115454 TCACTATGAATT
1 TCACTATGAATT
82115466 TC
1 TC
82115468 TAGTGATGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (12 bp):
TCACTATGAATT
Found at i:82121693 original size:14 final size:14
Alignment explanation
Indices: 82121674--82121703 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
82121664 ATAAAAATTT
82121674 TACATATATATATA
1 TACATATATATATA
82121688 TACATATATATATA
1 TACATATATATATA
82121702 TA
1 TA
82121704 TATTTATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TACATATATATATA
Found at i:82121725 original size:2 final size:2
Alignment explanation
Indices: 82121677--82121712 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
82121667 AAAATTTTAC
* *
82121677 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82121713 GATTTTCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82132464 original size:40 final size:40
Alignment explanation
Indices: 82132379--82132529 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
82132369 AATTGAATGA
* * *
82132379 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
82132419 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
82132460 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
82132499 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
82132530 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:82132543 original size:40 final size:40
Alignment explanation
Indices: 82132416--82132545 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
82132406 ATGCTGGAAA
* * * *
82132416 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
82132456 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
82132496 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
82132536 TTATATCCGG
1 TTATATCCGG
82132546 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:82136220 original size:46 final size:48
Alignment explanation
Indices: 82136146--82136249 Score: 131
Period size: 46 Copynumber: 2.2 Consensus size: 48
82136136 GGACAGGACA
* * * *
82136146 AGACAGAAATGAGCTATGTAAGTCCATA-T-CAGATATATGGCTTTGG
1 AGACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGG
* * *
82136192 AGATAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGG
1 AGACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGG
82136240 AGACAGGAAT
1 AGACAGGAAT
82136250 AATTCATGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 24 0.50
47 1 0.02
48 23 0.48
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (48 bp):
AGACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGG
Found at i:82143374 original size:26 final size:26
Alignment explanation
Indices: 82143330--82143399 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
82143320 CCTTTACATA
* *
82143330 TATGCTCACATAAGTTATGAAATGAG
1 TATGCTCACACAAGCTATGAAATGAG
*
82143356 TATGCTCACACAAGCTATGAAATGGG
1 TATGCTCACACAAGCTATGAAATGAG
* *
82143382 TTTGCTCACACGAGCTAT
1 TATGCTCACACAAGCTAT
82143400 CAGTTAGAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (26 bp):
TATGCTCACACAAGCTATGAAATGAG
Found at i:82146881 original size:41 final size:41
Alignment explanation
Indices: 82146824--82147009 Score: 228
Period size: 41 Copynumber: 4.5 Consensus size: 41
82146814 CAAAAATTTA
* **
82146824 GCTATGTATAGCACTTAGTGCACGAGATCGAGATAGCTTTG
1 GCTATGTATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
* *
82146865 GCTATGTATGGCACTTAGTGTGCAAGATCGAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
* ** *
82146906 GCTATTTATGAAACTTATTGTGCGAGATCGAGATAGCTTTG
1 GCTATGTATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
* ** * * *
82146947 GTTATGTATGGCACTTAGTGTGCGAGATTAAAATAGCCTTA
1 GCTATGTATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
82146988 GCTATGTATTGGCACTTAGTGT
1 GCTATGTA-TGGCACTTAGTGT
82147010 ACGGGATTTT
Statistics
Matches: 122, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
41 109 0.89
42 13 0.11
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (41 bp):
GCTATGTATGGCACTTAGTGTGCGAGATCGAGATAGCTTTG
Found at i:82148731 original size:16 final size:16
Alignment explanation
Indices: 82148712--82148742 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82148702 CTTCTTCACT
82148712 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
82148728 TACTTACTTACTTAA
1 TACTCACTTACTTAA
82148743 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:82148748 original size:20 final size:20
Alignment explanation
Indices: 82148709--82148748 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
82148699 AAACTTCTTC
* *
82148709 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
82148729 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
82148749 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:82149124 original size:55 final size:53
Alignment explanation
Indices: 82148934--82149187 Score: 234
Period size: 53 Copynumber: 4.8 Consensus size: 53
82148924 ACACGGGTAC
* * * * *
82148934 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
82148983 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
82149036 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
82149091 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * * * *
82149144 CCTTACCAATTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
82149188 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 39 0.23
55 41 0.24
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:82149125 original size:108 final size:109
Alignment explanation
Indices: 82148981--82149177 Score: 317
Period size: 108 Copynumber: 1.8 Consensus size: 109
82148971 ATCCTTTTGA
* *
82148981 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
82149044 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
82149089 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
82149154 TCCATGCCTTGGCATGGTCTTACA
66 GCCATGCCTTGGCATGGTCTTACA
82149178 CGGTATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
107 1 0.01
108 49 0.60
109 31 0.38
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:82156289 original size:16 final size:16
Alignment explanation
Indices: 82156270--82156300 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82156260 CTTCTTCACT
82156270 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
82156286 TACTTACTTACTTAA
1 TACTCACTTACTTAA
82156301 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:82156306 original size:20 final size:20
Alignment explanation
Indices: 82156267--82156306 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
82156257 AAACTTCTTC
* *
82156267 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
82156287 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
82156307 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:82156680 original size:107 final size:110
Alignment explanation
Indices: 82156539--82156735 Score: 321
Period size: 107 Copynumber: 1.8 Consensus size: 110
82156529 ATCCTTTTGA
*
82156539 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG-TGTCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTA-GAAACCTCACCAA
82156601 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
82156646 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTAGAAACCTCACCAAT
82156711 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
82156736 CGGTATCCTT
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
107 36 0.44
108 14 0.17
109 7 0.09
110 25 0.30
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATGTCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:82156745 original size:55 final size:54
Alignment explanation
Indices: 82156492--82156745 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
82156482 ACACGGGTAC
* * *
82156492 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
82156541 CTTACC-ATTGCCATGTCTTGACATGGTCTTACAT-GTGTCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * *
82156593 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * *
82156648 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
82156701 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
82156746 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
48 7 0.04
49 31 0.18
51 2 0.01
52 33 0.20
53 13 0.08
54 10 0.06
55 70 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:82167939 original size:15 final size:15
Alignment explanation
Indices: 82167916--82167952 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
82167906 AGAGACACGG
*
82167916 GTGTATGTCTCAGCC
1 GTGTGTGTCTCAGCC
82167931 GTGTGTGTCTCAGCC
1 GTGTGTGTCTCAGCC
82167946 GTGTGTG
1 GTGTGTG
82167953 ACACACGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.08, C:0.22, G:0.35, T:0.35
Consensus pattern (15 bp):
GTGTGTGTCTCAGCC
Found at i:82171410 original size:11 final size:11
Alignment explanation
Indices: 82171369--82171411 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
82171359 TTAAAAATAT
82171369 TATTTTATTAA
1 TATTTTATTAA
*
82171380 TA-TTTAATAA
1 TATTTTATTAA
*
82171390 GATATTTATTAA
1 TAT-TTTATTAA
82171402 TATTTTATTA
1 TATTTTATTA
82171412 TTTTATTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 8 0.31
11 9 0.35
12 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:82173190 original size:23 final size:23
Alignment explanation
Indices: 82173155--82173247 Score: 141
Period size: 23 Copynumber: 4.0 Consensus size: 23
82173145 CCCGATATAT
* *
82173155 GGCTCTTCATGAGCTTCCCGATA
1 GGCTATTCGTGAGCTTCCCGATA
82173178 GGCTATTCGTGAGCTTCCCGATA
1 GGCTATTCGTGAGCTTCCCGATA
82173201 GGCTATTCGTGAGCTTCCCGATA
1 GGCTATTCGTGAGCTTCCCGATA
* * *
82173224 GGCTCTTTGTGAGCTTCCGGATA
1 GGCTATTCGTGAGCTTCCCGATA
82173247 G
1 G
82173248 TTCTCGCTTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.16, C:0.26, G:0.27, T:0.31
Consensus pattern (23 bp):
GGCTATTCGTGAGCTTCCCGATA
Found at i:82175005 original size:21 final size:22
Alignment explanation
Indices: 82174972--82175012 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
82174962 TTCATTTATG
*
82174972 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
82174993 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
82175013 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:82175453 original size:28 final size:28
Alignment explanation
Indices: 82175422--82175496 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
82175412 AAACCATTCG
* * *
82175422 ATATTTTGCACATTAAGTTTCATTTTCA
1 ATATTTCGCACATTAAGTGTCATTCTCA
*
82175450 ATATCTCGCACATTAAGTGTCATTCTCA
1 ATATTTCGCACATTAAGTGTCATTCTCA
* *
82175478 ATATTTCGTACACTAAGTG
1 ATATTTCGCACATTAAGTG
82175497 CCATATTTGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (28 bp):
ATATTTCGCACATTAAGTGTCATTCTCA
Found at i:82183541 original size:20 final size:20
Alignment explanation
Indices: 82183509--82183565 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
82183499 TGTATGGGTT
*
82183509 TGCATTTTGGTGCCTCTGAT-
1 TGCACTTTGGTGCCTCT-ATC
82183529 TGCACATTT-GTGCCTCTATC
1 TGCAC-TTTGGTGCCTCTATC
82183549 TGCACTTTGGTGCCTCT
1 TGCACTTTGGTGCCTCT
82183566 TTGCGCATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.42
Consensus pattern (20 bp):
TGCACTTTGGTGCCTCTATC
Found at i:82186032 original size:19 final size:19
Alignment explanation
Indices: 82186008--82186053 Score: 78
Period size: 17 Copynumber: 2.5 Consensus size: 19
82185998 ACTAATTTCA
82186008 ATTGAAAAACAATATGTGG
1 ATTGAAAAACAATATGTGG
82186027 ATTG--AAACAATATGTGG
1 ATTGAAAAACAATATGTGG
82186044 ATTGAAAAAC
1 ATTGAAAAAC
82186054 TTTAGTGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.68
19 8 0.32
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.26
Consensus pattern (19 bp):
ATTGAAAAACAATATGTGG
Found at i:82187949 original size:29 final size:29
Alignment explanation
Indices: 82187914--82187980 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
82187904 GTTAATGCCA
* * *
82187914 CAACATTGGGATCAGAATGCTCAATGCTG
1 CAACATTGGGATCAAAATGCCCAAGGCTG
* *
82187943 CAACATTGAGATCAAAATGCCCAAGGTTG
1 CAACATTGGGATCAAAATGCCCAAGGCTG
82187972 CAACATTGG
1 CAACATTGG
82187981 CTAGGGAAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (29 bp):
CAACATTGGGATCAAAATGCCCAAGGCTG
Found at i:82191283 original size:16 final size:17
Alignment explanation
Indices: 82191252--82191285 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
82191242 GGTAAGCACC
82191252 TTCTGTGTGCCTTTCTT
1 TTCTGTGTGCCTTTCTT
*
82191269 TTCTGTTTG-CTTTCTT
1 TTCTGTGTGCCTTTCTT
82191285 T
1 T
82191286 GCTCTTGCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.00, C:0.21, G:0.15, T:0.65
Consensus pattern (17 bp):
TTCTGTGTGCCTTTCTT
Found at i:82195842 original size:23 final size:22
Alignment explanation
Indices: 82195780--82195843 Score: 56
Period size: 23 Copynumber: 2.8 Consensus size: 22
82195770 TTTACTTGAA
* *
82195780 AAATAATTTTAAGAAATATTTAT
1 AAATAATATTAA-AAATTTTTAT
* * **
82195803 AAAAAAGATTTTAAATTTTTAT
1 AAATAATATTAAAAATTTTTAT
82195825 CAAATAATATTAAAAATTT
1 -AAATAATATTAAAAATTT
82195844 AAAAAAAAAA
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
22 9 0.30
23 21 0.70
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (22 bp):
AAATAATATTAAAAATTTTTAT
Found at i:82199334 original size:21 final size:22
Alignment explanation
Indices: 82199321--82199369 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
82199311 AAATATATAT
82199321 AAATTATTTTTAAAAATTATTA
1 AAATTATTTTTAAAAATTATTA
*
82199343 AAATTA--TTTAAAAAGTATTA
1 AAATTATTTTTAAAAATTATTA
*
82199363 ACATTAT
1 AAATTAT
82199370 AAAAATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 18 0.75
22 6 0.25
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
AAATTATTTTTAAAAATTATTA
Found at i:82199901 original size:2 final size:2
Alignment explanation
Indices: 82199894--82199932 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
82199884 TTTATAATAA
* * *
82199894 AT AT AT AT AT CT AT AT CT AT CT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82199933 CACATACATA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82199914 original size:10 final size:10
Alignment explanation
Indices: 82199895--82199932 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
82199885 TTATAATAAA
82199895 TATATATATC
1 TATATATATC
*
82199905 TATATCTATC
1 TATATATATC
*
82199915 TATATATATA
1 TATATATATC
82199925 TATATATA
1 TATATATA
82199933 CACATACATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (10 bp):
TATATATATC
Found at i:82200879 original size:2 final size:2
Alignment explanation
Indices: 82200837--82200861 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82200827 TCCTATCAAA
82200837 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
82200862 AAGAATTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82203153 original size:15 final size:15
Alignment explanation
Indices: 82203133--82203171 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
82203123 AAACAAATAA
82203133 GGTCCAAATTAAAAC
1 GGTCCAAATTAAAAC
82203148 GGTCCAAATTAAAAC
1 GGTCCAAATTAAAAC
*
82203163 AGTCCAAAT
1 GGTCCAAAT
82203172 AGTCCACTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.46, C:0.21, G:0.13, T:0.21
Consensus pattern (15 bp):
GGTCCAAATTAAAAC
Found at i:82204275 original size:26 final size:27
Alignment explanation
Indices: 82204246--82204297 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
82204236 TACATAATCT
*
82204246 CTTTTAAATCTATT-TATATATATTTC
1 CTTTCAAATCTATTGTATATATATTTC
*
82204272 CTTTCAAATCTATTGTGTATATATTT
1 CTTTCAAATCTATTGTATATATATTT
82204298 TATTATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.29, C:0.12, G:0.04, T:0.56
Consensus pattern (27 bp):
CTTTCAAATCTATTGTATATATATTTC
Found at i:82208272 original size:19 final size:19
Alignment explanation
Indices: 82208248--82208294 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
82208238 CGACGCCTTC
*
82208248 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
82208267 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
82208286 TATGCATTA
1 TTTGCATTA
82208295 AAGTCCATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:82214461 original size:49 final size:49
Alignment explanation
Indices: 82214395--82214589 Score: 264
Period size: 49 Copynumber: 4.0 Consensus size: 49
82214385 GCTATTGTGA
*
82214395 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
82214444 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* ** *
82214493 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
82214543 AGTCGCATGTGTAGTAGTAAGTGCAGGCTACTATGCGTACCAGATAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
82214590 CTTCGGCTAC
Statistics
Matches: 126, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
49 84 0.67
50 42 0.33
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:82214565 original size:99 final size:99
Alignment explanation
Indices: 82214394--82214575 Score: 301
Period size: 99 Copynumber: 1.8 Consensus size: 99
82214384 AGCTATTGTG
** *
82214394 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGT
82214459 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
* **
82214493 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTAGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGT
*
82214558 AGTAAGTGCAGGCTACTA
66 ACTAAGTGCAGGCTACTA
82214576 TGCGTACCAG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
99 76 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (99 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:82217326 original size:16 final size:15
Alignment explanation
Indices: 82217277--82217326 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
82217267 GTGCTGTAAA
82217277 TTGGATTT-TTGTATC
1 TTGGATTTCTT-TATC
*
82217292 ATGGATTTCTTTATC
1 TTGGATTTCTTTATC
82217307 TTGGATTTCTTTATTC
1 TTGGATTTCTTTA-TC
82217323 TTGG
1 TTGG
82217327 CTTCTCTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
15 23 0.74
16 8 0.26
ACGTcount: A:0.14, C:0.10, G:0.18, T:0.58
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:82219403 original size:30 final size:30
Alignment explanation
Indices: 82219367--82219426 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82219357 TTCCCAAGCC
82219367 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
82219397 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
82219427 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:82220141 original size:49 final size:49
Alignment explanation
Indices: 82220075--82220269 Score: 255
Period size: 49 Copynumber: 4.0 Consensus size: 49
82220065 GCTATTGTGA
*
82220075 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
82220124 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* ** *
82220173 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * * *
82220223 GGTCGCATGTGTAGTAGTAAGTGCAGGCCACTATGCGTACTAGATAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
82220270 CTTCGGCTAC
Statistics
Matches: 127, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
49 85 0.67
50 42 0.33
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:82220245 original size:99 final size:99
Alignment explanation
Indices: 82220074--82220255 Score: 301
Period size: 99 Copynumber: 1.8 Consensus size: 99
82220064 AGCTATTGTG
**
82220074 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
*
82220139 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAGGCCACTACGTGTATCAGATGGTT
* **
82220173 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
*
82220238 AGTAAGTGCAGGCCACTA
66 ACTAAGTGCAGGCCACTA
82220256 TGCGTACTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
99 76 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (99 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCCACTACGTGTATCAGATGGTT
Found at i:82238784 original size:19 final size:19
Alignment explanation
Indices: 82238760--82238797 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
82238750 AAGCAGACTA
82238760 AAGATTATAGATCTTATCT
1 AAGATTATAGATCTTATCT
82238779 AAGATTATAGATCTTATCT
1 AAGATTATAGATCTTATCT
82238798 CCCTAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (19 bp):
AAGATTATAGATCTTATCT
Found at i:82239088 original size:177 final size:177
Alignment explanation
Indices: 82238779--82239704 Score: 1294
Period size: 177 Copynumber: 5.2 Consensus size: 177
82238769 GATCTTATCT
* *** ** *
82238779 AAGATTATAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATAAAAAATGACGAATCTTATCTTC
1 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAAATGGCGAATCTTATCTTC
* *
82238844 CCGAGGTAGCAAGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAAAGAACAGG
66 CCGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAACAGG
* *
82238909 TTGAAGATGGTAGTCTTATCTTTCTGAGGTAGCAAGGAAGTAGACTG
131 TTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* * * *
82238956 AAGATTGTAGATTTTATCTCCCTAAGCAATAGCGGAGCAGATCGAAGATGGCGAATCTTATCTTC
1 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAAATGGCGAATCTTATCTTC
* * * * *
82239021 CCAAGGTAGTAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGTAAGAGAGCAGG
66 CCGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAACAGG
* *
82239086 TTGAAGATGATAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTG
131 TTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* * * *
82239133 ATGATTGTAGATCTTATCTCCCTAAGCAGTAACAGAGCAGATCAAAAATAGCGAATCTTATCTTC
1 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAAATGGCGAATCTTATCTTC
* * * * * *
82239198 CTGAGATAGCAGGGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGTAAGAGAACAGA
66 CCGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAACAGG
* *
82239263 TTGAATATGGTACTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
131 TTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* * *
82239310 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTAGAGCAAACCGAAAATGGCGAATCTTATCTTC
1 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAAATGGCGAATCTTATCTTC
** * ** *
82239375 TTGAGGTAGCAGGGGAGTAGATTTTAGCCACTGGCCTTATCTCTCTAAGGTAGCAAGAGAACAAG
66 CCGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAACAGG
*
82239440 TTGAAGATGGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTG
131 TTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* * * * * * *
82239487 AAGATTTTAGATCTTATCTTCCTAAGCAGTAGTAAAGCAGATAGAAGATGGTGAATCTTATCTTC
1 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAAATGGCGAATCTTATCTTC
* * * * *
82239552 CCAAGGTAGTAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTACCAAGAGAGCAGC
66 CCGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAACAGG
* * * *
82239617 TTGAAGATGGTAATCTTATCTTCTTGAGGTAGCAAGGAAGTAGATTG
131 TTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* *
82239664 AAGATTGTAGATGTTATCTCCCTAAGCAGTAGCGGAGCAGA
1 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGA
82239705 GGGGAGCAGA
Statistics
Matches: 662, Mismatches: 87, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
177 662 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (177 bp):
AAGATTGTAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAAATGGCGAATCTTATCTTC
CCGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAACAGG
TTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
Found at i:82239281 original size:44 final size:46
Alignment explanation
Indices: 82239233--82240002 Score: 178
Period size: 44 Copynumber: 17.2 Consensus size: 46
82239223 AGCCACCAGC
* * * *
82239233 CTTATCTCT-CTGAGGTAGTAAGAGAA-CAGATTGAATATGGTA-CT
1 CTTATCTCTCCTGAGGTAGCAAG-GAAGCAGACTGAAGATGGTAGAT
*
82239277 CTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGAT
1 CTTATCTCTCCTGAGGTAGCAAGGAAGCAGACTGAAGATGGTAGAT
* * * * * *
82239322 CTTATCTC-CCTAAGCAGTAG-TA-G-AGCAAACCGAAAATGG-CGAAT
1 CTTATCTCTCCTGAG--GTAGCAAGGAAGCAGACTGAAGATGGTAG-AT
* * * * * ** **** **
82239366 CTTATCT-TCTTGAGGTAGCAGGGGAGTAGATTTTAGCCACT-GGC
1 CTTATCTCTCCTGAGGTAGCAAGGAAGCAGACTGAAGATGGTAGAT
* *
82239410 CTTATCTCT-CTAAGGTAGCAAGAGAA-CA-AGTTGAAGATGGTAG-T
1 CTTATCTCTCCTGAGGTAGCAAG-GAAGCAGA-CTGAAGATGGTAGAT
* **
82239454 CTTATCT-TCCTAAGGTAGCAAGGAAGCAGACTGAAGATTTTAGAT
1 CTTATCTCTCCTGAGGTAGCAAGGAAGCAGACTGAAGATGGTAGAT
* *
82239499 CTTATCT-TCCTAAGCAGTAG-TA--AAGCAGA-TAGAAGATGGT-GAAT
1 CTTATCTCTCCTGAG--GTAGCAAGGAAGCAGACT-GAAGATGGTAG-AT
** * * * * ** ***** *
82239543 CTTATCT-TCCCAAGGTAGTAGGGGAGCAGATTTTAGCCACCAG-C
1 CTTATCTCTCCTGAGGTAGCAAGGAAGCAGACTGAAGATGGTAGAT
* *
82239587 CTTATCTCT-CTAAGGTACCAA-GAGAGCAG-CTTGAAGATGGTA-AT
1 CTTATCTCTCCTGAGGTAGCAAGGA-AGCAGAC-TGAAGATGGTAGAT
* * * *
82239631 CTTATCT-TCTTGAGGTAGCAAGGAAGTAGATTGAAGATTGTAGAT
1 CTTATCTCTCCTGAGGTAGCAAGGAAGCAGACTGAAGATGGTAGAT
* * * * ** * ** *
82239676 GTTATCTC-CCTAAGCAGTAGCGGAGCAGAGGGGAGCAGATTTTAGCTGCAAGCT
1 CTTATCTCTCCT-----G-AG-GTAGCA-A-GGAAGCAGACTGAAGATGGTAGAT
**
82239730 C-TATCTCT-CTGAGGTAGCAA-GATAGCAGGTTGAAGATGGTAG-T
1 CTTATCTCTCCTGAGGTAGCAAGGA-AGCAGACTGAAGATGGTAGAT
* *
82239773 CTTATCT-TCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCTCCTGAGGTAGCAAGGAAGCAGACTGAAGATGGTAGAT
* * * *
82239818 CTTATCTC-CCTAAGTAGTAGC--GG-AGCA-AATCAATGATGG-CGAAT
1 CTTATCTCTCCTGAG--GTAGCAAGGAAGCAGACTGAA-GATGGTAG-AT
* * * ** **** *
82239862 CTTAT-TTTCCTGAGTTAGC-AGGAGAGCAGATTTTAGCCACTAG-C
1 CTTATCTCTCCTGAGGTAGCAAGGA-AGCAGACTGAAGATGGTAGAT
** * * *
82239906 CTTATCTCT-CTGAGGTAGCAA-GAGAGCAGGTTAAAGATTGTA-TT
1 CTTATCTCTCCTGAGGTAGCAAGGA-AGCAGACTGAAGATGGTAGAT
* *
82239950 CTTATCT-TCCTGAGGTAGCAAGGAAGCAGATTGAATATGGTAGAT
1 CTTATCTCTCCTGAGGTAGCAAGGAAGCAGACTGAAGATGGTAGAT
82239995 CTTATCTC
1 CTTATCTC
82240003 ATTAAAGTTG
Statistics
Matches: 519, Mismatches: 136, Indels: 140
0.65 0.17 0.18
Matches are distributed among these distances:
42 12 0.02
43 27 0.05
44 322 0.62
45 97 0.19
46 13 0.03
47 15 0.03
48 1 0.00
50 1 0.00
51 2 0.00
52 5 0.01
53 9 0.02
54 15 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (46 bp):
CTTATCTCTCCTGAGGTAGCAAGGAAGCAGACTGAAGATGGTAGAT
Found at i:82239765 original size:319 final size:319
Alignment explanation
Indices: 82239412--82240002 Score: 869
Period size: 319 Copynumber: 1.9 Consensus size: 319
82239402 CCACTGGCCT
82239412 TATCTCTCTAAGGTAGCAAGAGAACAAGTTGAAGATGGTAGTCTTATCTTCCTAAGGTAGCAAGG
1 TATCTCTCTAAGGTAGCAAGAGAACAAGTTGAAGATGGTAGTCTTATCTTCCTAAGGTAGCAAGG
** * * * *
82239477 AAGCAGACTGAAGATTTTAGATCTTATCTTCCTAAGCAGTAGTAAAGCAGAT-AGAAGATGGTGA
66 AAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCAAAGCAAATCA-AAGATGGCGA
* *
82239541 ATCTTATCTTCCCAAGGTAGTAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTACC
130 ATCTTATCTTCCCAAGGTAGCAGGAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTACC
* * * *
82239606 AAGAGAGCAGCTTGAAGATGGTAATCTTATCTTCTTGAGGTAGCAAGGAAGTAGATTGAAGATTG
195 AAGAGAGCAGCTTAAAGATGGTAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATGG
*
82239671 TAGATGTTATCTCCCTAAGCAGTAGCGGAGCAGAGGGGAGCAGATTTTAGCTGCAAGCTC
260 TAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGAGGGGAGCAGATTTTAGCTGCAAGCTC
* * * * *
82239731 TATCTCTCTGAGGTAGCAAGATAGCAGGTTGAAGATGGTAGTCTTATCTTCCTGAGGTAGCAAGG
1 TATCTCTCTAAGGTAGCAAGAGAACAAGTTGAAGATGGTAGTCTTATCTTCCTAAGGTAGCAAGG
* ** *
82239796 AAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGCGGAGCAAATCAATGATGGCGAA
66 AAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCAAAGCAAATCAAAGATGGCGAA
* ** * * * *
82239861 TCTTATTTTCCTGAGTTAGCAGGAGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCA
131 TCTTATCTTCCCAAGGTAGCAGGAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTACCA
* * * *
82239926 AGAGAGCAGGTTAAAGATTGTATTCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAATATGGT
196 AGAGAGCAGCTTAAAGATGGTAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATGGT
82239991 AGATCTTATCTC
261 AGATCTTATCTC
82240003 ATTAAAGTTG
Statistics
Matches: 238, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
319 237 1.00
320 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (319 bp):
TATCTCTCTAAGGTAGCAAGAGAACAAGTTGAAGATGGTAGTCTTATCTTCCTAAGGTAGCAAGG
AAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCAAAGCAAATCAAAGATGGCGAA
TCTTATCTTCCCAAGGTAGCAGGAGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTACCA
AGAGAGCAGCTTAAAGATGGTAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATGGT
AGATCTTATCTCCCTAAGCAGTAGCGGAGCAGAGGGGAGCAGATTTTAGCTGCAAGCTC
Found at i:82239823 original size:142 final size:142
Alignment explanation
Indices: 82239562--82239844 Score: 424
Period size: 142 Copynumber: 2.0 Consensus size: 142
82239552 CCAAGGTAGT
*
82239562 AGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTACCAAGAGAGCAGCTTGAAGATGG
1 AGGGGAGCAGATTTTAGCCACAAGCCTTATCTCTCTAAGGTACCAAGAGAGCAGCTTGAAGATGG
* * * * *
82239627 TAATCTTATCTTCTTGAGGTAGCAAGGAAGTAGATTGAAGATTGTAGATGTTATCTCCCTAAGCA
66 TAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCA
82239692 GTAGCGGAGCAG
131 GTAGCGGAGCAG
** * * * *
82239704 AGGGGAGCAGATTTTAGCTGCAAG-CTCTATCTCTCTGAGGTAGCAAGATAGCAGGTTGAAGATG
1 AGGGGAGCAGATTTTAGCCACAAGCCT-TATCTCTCTAAGGTACCAAGAGAGCAGCTTGAAGATG
* *
82239768 GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGT
65 GTAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGC
82239833 AGTAGCGGAGCA
130 AGTAGCGGAGCA
82239845 AATCAATGAT
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
141 2 0.02
142 124 0.98
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (142 bp):
AGGGGAGCAGATTTTAGCCACAAGCCTTATCTCTCTAAGGTACCAAGAGAGCAGCTTGAAGATGG
TAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCA
GTAGCGGAGCAG
Found at i:82243732 original size:32 final size:34
Alignment explanation
Indices: 82243665--82243733 Score: 81
Period size: 32 Copynumber: 2.1 Consensus size: 34
82243655 ACAAGATACA
* * *
82243665 AAAGCATAATTTCTATAGTTTTTCTTTTCTTTTT
1 AAAGCATAATTTCTATAATTTTTCTTTACTATTT
82243699 AAAG-ATAATTT-TATAATTTTTCATTTAC-ATTT
1 AAAGCATAATTTCTATAATTTTTC-TTTACTATTT
82243731 AAA
1 AAA
82243734 AAGGTCATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 16 0.52
33 11 0.35
34 4 0.13
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.54
Consensus pattern (34 bp):
AAAGCATAATTTCTATAATTTTTCTTTACTATTT
Found at i:82248248 original size:27 final size:27
Alignment explanation
Indices: 82248187--82248249 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
82248177 TAAACACAAG
*
82248187 AAATAATATTCAAATGATGCATGATAAA
1 AAATAA-ATTCAAATAATGCATGATAAA
* *
82248215 AACATAAA-TCAAATAATGTATGATATAC
1 AA-ATAAATTCAAATAATGCATGATA-AA
82248243 AAATAAA
1 AAATAAA
82248250 AGAAATACAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 20 0.67
28 6 0.20
29 4 0.13
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATAAATTCAAATAATGCATGATAAA
Found at i:82248771 original size:21 final size:21
Alignment explanation
Indices: 82248742--82248786 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
82248732 ACATATAAGA
*
82248742 AAAATAATAGATATAAAGT-AT
1 AAAACAATAGATAT-AAGTAAT
*
82248763 AAAACAATATATATAAGTAAT
1 AAAACAATAGATATAAGTAAT
82248784 AAA
1 AAA
82248787 TATAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (21 bp):
AAAACAATAGATATAAGTAAT
Found at i:82248883 original size:17 final size:19
Alignment explanation
Indices: 82248734--82248883 Score: 57
Period size: 20 Copynumber: 7.6 Consensus size: 19
82248724 TAATATAAAC
*
82248734 ATATAAGAAAAATAATAGAT
1 ATATAAGTAAAATAATA-AT
*
82248754 ATA-AAGTATAAAACAAT-AT
1 ATATAAG--TAAAATAATAAT
82248773 ATATAAGTAATAA-ATATAAT
1 ATATAAGTAA-AATA-ATAAT
82248793 ATATGAAAAGATGTAAAATAATAAT
1 ATAT----A-A-GTAAAATAATAAT
*
82248818 -T-TAAGGAAAATAAT-AT
1 ATATAAGTAAAATAATAAT
*
82248834 ATGTAA-TAAGTAATAATAAT
1 ATATAAGTAA--AATAATAAT
* *
82248854 ATATAATTAAAAATAATACT
1 ATATAAGT-AAAATAATAAT
82248874 -TATAA-TAAAA
1 ATATAAGTAAAA
82248884 CAATTTTATA
Statistics
Matches: 104, Mismatches: 6, Indels: 43
0.68 0.04 0.28
Matches are distributed among these distances:
16 2 0.02
17 16 0.15
18 9 0.09
19 24 0.23
20 27 0.26
21 8 0.08
22 2 0.02
23 1 0.01
24 2 0.02
25 8 0.08
26 5 0.05
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (19 bp):
ATATAAGTAAAATAATAAT
Found at i:82250137 original size:16 final size:17
Alignment explanation
Indices: 82250116--82250148 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
82250106 AGGTTGTAAT
82250116 TGTAAT-GGGTCAAGGG
1 TGTAATCGGGTCAAGGG
*
82250132 TGTAATCGGGTTAAGGG
1 TGTAATCGGGTCAAGGG
82250149 ATAGTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.24, C:0.06, G:0.42, T:0.27
Consensus pattern (17 bp):
TGTAATCGGGTCAAGGG
Found at i:82250643 original size:81 final size:82
Alignment explanation
Indices: 82250508--82250748 Score: 385
Period size: 81 Copynumber: 2.9 Consensus size: 82
82250498 CAAATCATCT
* * *
82250508 TGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATTTGTTCCTTGTAAGCAT
1 TGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
*
82250573 AAGGATGCCAAACCA-A
66 AAGGATACCAAACCACA
82250589 TGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
1 TGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
*
82250654 AAGGATACCAAACCATCT
66 AAGGATACCAAACCA-CA
* * * *
82250672 TGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTTGTAAACAC
1 TGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
82250737 AAGGATACCAAA
66 AAGGATACCAAA
82250749 TCATCTTGGA
Statistics
Matches: 149, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
81 76 0.51
83 73 0.49
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (82 bp):
TGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
AAGGATACCAAACCACA
Found at i:82250715 original size:83 final size:83
Alignment explanation
Indices: 82250498--82250756 Score: 405
Period size: 83 Copynumber: 3.1 Consensus size: 83
82250488 GTAAGAATGT
* * *
82250498 CAAATCATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATTTGTTCC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
* *
82250563 TTGTAAGCATAAGGATGC
66 TTGTAAGCACAAGGATAC
*
82250581 CAAACCA--ATGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
82250644 TTGTAAGCACAAGGATAC
66 TTGTAAGCACAAGGATAC
* * *
82250662 CAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
*
82250727 TTGTAAACACAAGGATAC
66 TTGTAAGCACAAGGATAC
*
82250745 CAAATCATCTTG
1 CAAACCATCTTG
82250757 GATCTGCTTC
Statistics
Matches: 162, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
81 76 0.47
83 86 0.53
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (83 bp):
CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
TTGTAAGCACAAGGATAC
Found at i:82250893 original size:119 final size:119
Alignment explanation
Indices: 82250678--82250994 Score: 501
Period size: 119 Copynumber: 2.7 Consensus size: 119
82250668 ATCTTGAGTC
* * * * * *
82250678 TATTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTTGTAAACACAAGGAT
1 TATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
*
82250743 ACCAAATCATCTTGGATCTGCTTCAGGATAAACATCTGAAGGT-TAGATCTGCTA
66 GCCAAATCATCTTGGATCTGCTTCAGGATAAACATCTGAA-GTCTAGATCTGCTA
* *
82250797 TATTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTTGATTTGTTCCTTGTAAGCACAAGGAT
1 TATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
*
82250862 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTCTAGATCTGCTA
66 GCCAAATCATCTTGGATCTGCTTCAGGATAAACATCTGAAGTCTAGATCTGCTA
* * *
82250916 TCTTTGAGAACGTCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 TATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
82250981 GCCAAATCATCTTG
66 GCCAAATCATCTTG
82250995 AGTCTATTTT
Statistics
Matches: 182, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
118 2 0.01
119 180 0.99
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (119 bp):
TATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
GCCAAATCATCTTGGATCTGCTTCAGGATAAACATCTGAAGTCTAGATCTGCTA
Found at i:82251089 original size:405 final size:404
Alignment explanation
Indices: 82250517--82251483 Score: 1677
Period size: 405 Copynumber: 2.4 Consensus size: 404
82250507 TTGAGTCTGC
* * * * * *
82250517 TTGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATTTGTTCCTTGTAAGCATAAGGATGCC
1 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
* * * *
82250582 AAACCA--ATGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCT
66 AAATCATCTTGAGTCTTTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCT
82250645 TGTAAGCACAAGGATACCAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAA
131 TGTAAGCACAAGGATACCAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAA
* *
82250710 CGTCCTCGATTTGTTTCTTGTAAACACAAGGATACCAAATCATCTTGGATCTGCTTCAGGATAAA
196 CGTCCTCGATTTGTTTCTTGTAAACACAAGGATACCAAATCATCTTGGATCCGCTTCAGCATAAA
*
82250775 CATCTGAAGGTTAGATCTGCTATATTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTTGATT
261 CATCTGAAGGTTAGATCTGCTATATTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATT
82250840 TGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTC
326 TGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTC
82250905 TAGATCTGCTATCT
391 TAGATCTGCTATCT
*
82250919 TTGAGAACGTCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
1 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
*
82250984 AAATCATCTTGAGTCTATTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCC
66 AAATCATCTTGAGTCT-TTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
*
82251049 TTTTAAGCACAAGGATACCAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCA
130 TTGTAAGCACAAGGATACCAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCA
82251114 ACGTCCTCGATTTGTTTCTTGTAAACACAAGGATACCAAATCATCTTGGATCCGCTTCAGCATAA
195 ACGTCCTCGATTTGTTTCTTGTAAACACAAGGATACCAAATCATCTTGGATCCGCTTCAGCATAA
82251179 ACATCTGAAGGTTAGATCTGCTATATTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGAT
260 ACATCTGAAGGTTAGATCTGCTATATTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGAT
82251244 TTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGT
325 TTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGT
*
82251309 CTAGATCTGCTGTCT
390 CTAGATCTGCTATCT
82251324 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
1 TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
* * * * *
82251389 AAATCATCTTGAGTCTGTTTTGAGAACATCTGAGAGTAATATCTGCAACGTTCTCGATTTATTTC
66 AAATCATCTTGAGTCT-TTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
* * *
82251454 TTGTAAACACAAGAATACCAAATCATCTTG
130 TTGTAAGCACAAGGATACCAAACCATCTTG
82251484 GATCTGCTTC
Statistics
Matches: 533, Mismatches: 29, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
402 63 0.12
404 7 0.01
405 463 0.87
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (404 bp):
TTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCC
AAATCATCTTGAGTCTTTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCT
TGTAAGCACAAGGATACCAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAA
CGTCCTCGATTTGTTTCTTGTAAACACAAGGATACCAAATCATCTTGGATCCGCTTCAGCATAAA
CATCTGAAGGTTAGATCTGCTATATTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATT
TGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTC
TAGATCTGCTATCT
Found at i:82251143 original size:83 final size:84
Alignment explanation
Indices: 82250913--82251161 Score: 374
Period size: 84 Copynumber: 3.0 Consensus size: 84
82250903 TCTAGATCTG
* * **
82250913 CTATCTTTGAGAACGTCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTCCTTGTAAGCACAAG
1 CTAT-TTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAG
*
82250978 GATGCCAAATCATCTTGAGT
65 GATACCAAATCATCTTGAGT
* *
82250998 CTATTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTTTAAGCACAAGG
1 CTATTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGG
*
82251063 ATACCAAACCATCTTGAGT
66 ATACCAAATCATCTTGAGT
* * * *
82251082 CTA-TTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTTGTAAACACAAGG
1 CTATTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGG
82251146 ATACCAAATCATCTTG
66 ATACCAAATCATCTTG
82251162 GATCCGCTTC
Statistics
Matches: 149, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
83 70 0.47
84 75 0.50
85 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (84 bp):
CTATTTTGAGAACATCTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGG
ATACCAAATCATCTTGAGT
Found at i:82251298 original size:119 final size:119
Alignment explanation
Indices: 82251083--82251399 Score: 501
Period size: 119 Copynumber: 2.7 Consensus size: 119
82251073 ATCTTGAGTC
* * * * * *
82251083 TATTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTTGTAAACACAAGGAT
1 TATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
*
82251148 ACCAAATCATCTTGGATCCGCTTCAGCATAAACATCTGAAGGT-TAGATCTGCTA
66 GCCAAATCATCTTGGATCCGCTTCAGCATAAACATCTGAA-GTCTAGATCTGCTA
*
82251202 TATTTGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 TATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
* * *
82251267 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTCTAGATCTGCTG
66 GCCAAATCATCTTGGATCCGCTTCAGCATAAACATCTGAAGTCTAGATCTGCTA
* *
82251321 TCTTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 TATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
82251386 GCCAAATCATCTTG
66 GCCAAATCATCTTG
82251400 AGTCTGTTTT
Statistics
Matches: 183, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
118 2 0.01
119 181 0.99
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (119 bp):
TATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
GCCAAATCATCTTGGATCCGCTTCAGCATAAACATCTGAAGTCTAGATCTGCTA
Found at i:82251465 original size:84 final size:85
Alignment explanation
Indices: 82251318--82251483 Score: 228
Period size: 84 Copynumber: 2.0 Consensus size: 85
82251308 TCTAGATCTG
* * * * *
82251318 CTGTCTTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAG
1 CTGTCTTTGAGAACATCTGAGAGTCAAATCTGCAACGTCCTCGATTTATTCCTTGTAAACACAAG
* *
82251383 GATGCCAAATCATCTTGAGT
66 AATACCAAATCATCTTGAGT
* *
82251403 CTGT-TTTGAGAACATCTGAGAGT-AATATCTGCAACGTTCTCGATTTATTTCTTGTAAACACAA
1 CTGTCTTTGAGAACATCTGAGAGTCAA-ATCTGCAACGTCCTCGATTTATTCCTTGTAAACACAA
82251466 GAATACCAAATCATCTTG
65 GAATACCAAATCATCTTG
82251484 GATCTGCTTC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
83 2 0.03
84 65 0.92
85 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (85 bp):
CTGTCTTTGAGAACATCTGAGAGTCAAATCTGCAACGTCCTCGATTTATTCCTTGTAAACACAAG
AATACCAAATCATCTTGAGT
Found at i:82263640 original size:42 final size:40
Alignment explanation
Indices: 82263562--82263657 Score: 104
Period size: 42 Copynumber: 2.4 Consensus size: 40
82263552 ATTAATAAGT
* *
82263562 AATAATAATATATAATTAAAAATAATACTCATAATAAAACA
1 AATAATAATATATAATTAAAAATAATAATCAAAAT-AAACA
* * * *
82263603 ATTTTATAATATATAATATAAAAGTAA-AATTAAAATAAACA
1 A-ATAATAATATATAAT-TAAAAATAATAATCAAAATAAACA
82263644 AATAATAATATATA
1 AATAATAATATATA
82263658 TAATAATATA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
40 11 0.24
41 7 0.16
42 19 0.42
43 8 0.18
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (40 bp):
AATAATAATATATAATTAAAAATAATAATCAAAATAAACA
Found at i:82263662 original size:12 final size:11
Alignment explanation
Indices: 82263544--82263671 Score: 57
Period size: 11 Copynumber: 11.2 Consensus size: 11
82263534 ATTTAAGGAA
*
82263544 AATAATATATT
1 AATAATATAAT
82263555 AATAAGTAATAAT
1 AATAA-T-ATAAT
82263568 AAT-ATATAATT
1 AATAATATAA-T
* *
82263579 AAAAATAATACT
1 AATAAT-ATAAT
* * *
82263591 CATAATAAAAC
1 AATAATATAAT
**
82263602 AATTTTATAAT
1 AATAATATAAT
82263613 ATATAATATAA-
1 A-ATAATATAAT
*
82263624 AAGTAAAATTAA-
1 AA-TAATA-TAAT
*
82263636 AATAA-ACAAAT
1 AATAATA-TAAT
82263647 AATAATATATAT
1 AATAATATA-AT
82263659 AATAATATAAT
1 AATAATATAAT
82263670 AA
1 AA
82263672 ATATAGGACT
Statistics
Matches: 87, Mismatches: 19, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
10 8 0.09
11 36 0.41
12 33 0.38
13 10 0.11
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.34
Consensus pattern (11 bp):
AATAATATAAT
Found at i:82266197 original size:28 final size:27
Alignment explanation
Indices: 82266134--82266203 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
82266124 ATAGTGAGTC
82266134 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
82266161 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
82266189 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82266204 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:82273597 original size:28 final size:27
Alignment explanation
Indices: 82273534--82273603 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
82273524 ATAGTGAGTC
82273534 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
82273561 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
82273589 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82273604 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:82277211 original size:22 final size:22
Alignment explanation
Indices: 82277165--82277211 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
82277155 TATTAGATAT
**
82277165 TAAATAGATATTTATTATTTTA
1 TAAATAGATATTTATTATTAAA
82277187 TAAA-AGATATTTATTAATTAAA
1 TAAATAGATATTTATT-ATTAAA
82277209 TAA
1 TAA
82277212 TTATATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TAAATAGATATTTATTATTAAA
Found at i:82277387 original size:9 final size:9
Alignment explanation
Indices: 82277375--82277467 Score: 55
Period size: 9 Copynumber: 10.1 Consensus size: 9
82277365 AAAAAGGAGC
82277375 GAAAAGAAA
1 GAAAAGAAA
*
82277384 GAAAAAAAA
1 GAAAAGAAA
*
82277393 GAAAAAAAA
1 GAAAAGAAA
82277402 GAAAAAGAAA
1 G-AAAAGAAA
*
82277412 -CAAAGCAAA
1 GAAAAG-AAA
82277421 CGAAATAGAAA
1 -GAAA-AGAAA
* ** *
82277432 GTAGGGGAA
1 GAAAAGAAA
*
82277441 GGAAAGAAA
1 GAAAAGAAA
*
82277450 GAAAA-AGA
1 GAAAAGAAA
82277458 GAAAAGAAA
1 GAAAAGAAA
82277467 G
1 G
82277468 GAGAAAAGGG
Statistics
Matches: 63, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
8 11 0.17
9 36 0.57
10 9 0.14
11 5 0.08
12 2 0.03
ACGTcount: A:0.71, C:0.03, G:0.24, T:0.02
Consensus pattern (9 bp):
GAAAAGAAA
Found at i:82279317 original size:46 final size:46
Alignment explanation
Indices: 82279267--82279541 Score: 347
Period size: 46 Copynumber: 6.0 Consensus size: 46
82279257 GCTTTCTGAT
* * * *
82279267 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
82279313 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
82279359 ATGAAATGTGTAAGACCAAGGTTGAAAGATACCATGGCAACGTGATG
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-C
** *
82279406 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
82279452 A-GAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
82279498 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
82279542 TCGAAGATAA
Statistics
Matches: 209, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 169 0.81
47 39 0.19
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:82279522 original size:139 final size:139
Alignment explanation
Indices: 82279277--82279536 Score: 391
Period size: 139 Copynumber: 1.9 Consensus size: 139
82279267 ATGAAATGTG
* * **
82279277 TAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATGAATAAGACCATGGTTGAAAGA
* * *
82279342 TACCATGGCAACGTGACATGAAATGTGTAAGACCAAGGTTGAAAGATACCATGGCAACGTGATGG
66 TACCATGGCAACATGACATGAAATGAGTAAGACCAAGGTTGAAAGACACCATGGCAACGTGATGG
82279407 GGAAATGAA
131 GGAAATGAA
*
82279416 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATAAGACCATGGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATAACATG-AAATGAATAAGACCATGGTTGAAAG
*
82279480 ATACCATGGCAACATGACA-GAAAATGAGTAAGACCATA-GTTGAAAGACACTATGGCA
65 ATACCATGGCAACATGACATG-AAATGAGTAAGACCA-AGGTTGAAAGACACCATGGCA
82279537 TCATGTCGAA
Statistics
Matches: 109, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
138 2 0.02
139 106 0.97
140 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (139 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAATGAGTAAGACCAAGGTTGAAAGACACCATGGCAACGTGATGG
GGAAATGAA
Found at i:82290443 original size:17 final size:19
Alignment explanation
Indices: 82290415--82290449 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
82290405 TGGCGGACGC
82290415 ATAAACCAAGAAC-ACACG
1 ATAAACCAAGAACTACACG
82290433 ATAAA-CAAGAACTACAC
1 ATAAACCAAGAACTACAC
82290450 CAAAATGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.57, C:0.26, G:0.09, T:0.09
Consensus pattern (19 bp):
ATAAACCAAGAACTACACG
Found at i:82298654 original size:30 final size:30
Alignment explanation
Indices: 82298618--82298718 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
82298608 GACAAGATTG
* *
82298618 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATACA
* * *
82298648 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATACA
* *
82298676 GCACTAAGTGTGCGAGCTGAAAA-TATACA
1 GCACTAAGTGTGCGAGTTTAAAATTATACA
82298705 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82298719 GATTCACTAT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 19 0.32
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATACA
Found at i:82306161 original size:60 final size:59
Alignment explanation
Indices: 82306041--82306177 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 59
82306031 CAAAGTTAAC
* *
82306041 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* ***
82306102 TGGGCCTAGCCCTTATCAATATCAATCTGGGTTGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
82306162 TGGGCCTTA-CCCATAT
1 TGGGCC-TAGCCCATAT
82306178 TAACATAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
59 4 0.06
60 48 0.74
61 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:82306859 original size:16 final size:15
Alignment explanation
Indices: 82306838--82306868 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
82306828 TTAAAATGCC
82306838 GGCTTTTCGACATTTT
1 GGCTTTTCGAC-TTTT
82306854 GGCTTTTCGACTTTT
1 GGCTTTTCGACTTTT
82306869 ACCGATGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.10, C:0.19, G:0.19, T:0.52
Consensus pattern (15 bp):
GGCTTTTCGACTTTT
Found at i:82310477 original size:33 final size:34
Alignment explanation
Indices: 82310430--82310516 Score: 115
Period size: 33 Copynumber: 2.6 Consensus size: 34
82310420 TTCAAGCTTT
*
82310430 ACTGGGCCTAAGCCCTATCCAGAAAT-AGTA-TTA
1 ACTGGGCCTTAGCCCTATCCAGAAATCAG-AGTTA
*
82310463 ACTGGGCCTTAGCCCTATTCAGAAATCAGAGTTA
1 ACTGGGCCTTAGCCCTATCCAGAAATCAGAGTTA
*
82310497 ATTGGGCCTTAGCCCATATC
1 ACTGGGCCTTAGCCC-TATC
82310517 AATATTAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
33 25 0.53
34 19 0.40
35 3 0.06
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (34 bp):
ACTGGGCCTTAGCCCTATCCAGAAATCAGAGTTA
Found at i:82310606 original size:61 final size:63
Alignment explanation
Indices: 82310456--82310606 Score: 188
Period size: 60 Copynumber: 2.5 Consensus size: 63
82310446 ATCCAGAAAT
* *
82310456 AGTATTAA-CTGGGCCTTAGCCCTATT-CAGAAATCAGAGTTAATTGGGCCTTAGCCCATATC
1 AGTATTAATCTGGGCCATAGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATC
* * *
82310517 AATATTAATCTGGGCCATAGCCC-CTTACAG-TATCAGAG-TATACTGGGCC-TAGCCCATATC
1 AGTATTAATCTGGGCCATAGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATC
* *
82310577 AGTATCAATCTGGGCCGTAGCCCTATTACA
1 AGTATTAATCTGGGCCATAGCCCTATTACA
82310607 AGTCGAGATA
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
60 33 0.43
61 28 0.36
62 16 0.21
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (63 bp):
AGTATTAATCTGGGCCATAGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATC
Found at i:82310624 original size:60 final size:60
Alignment explanation
Indices: 82310456--82310634 Score: 172
Period size: 60 Copynumber: 3.0 Consensus size: 60
82310446 ATCCAGAAAT
* * * *
82310456 AGTATTAA-CTGGGCCTTAGCCCTATTCAGAAATCAGAGTTA-ATTGGGCCTTAGCCCATATC
1 AGTATTAATCTGGGCCATAGCCCTATT-ACAAGTC-GAGATATATTGGGCC-TAGCCCATATC
* * *
82310517 AATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATACTGGGCCTAGCCCATATC
1 AGTATTAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATATTGGGCCTAGCCCATATC
* * *
82310577 AGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATATTGGGCCT-TCCCATAT
1 AGTATTAATCTGGGCCATAGCCCTATTACAAGTCGAGATATATTGGGCCTAGCCCATAT
82310635 TAACACAGTT
Statistics
Matches: 97, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
59 10 0.10
60 47 0.48
61 25 0.26
62 15 0.15
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
AGTATTAATCTGGGCCATAGCCCTATTACAAGTCGAGATATATTGGGCCTAGCCCATATC
Found at i:82314077 original size:29 final size:28
Alignment explanation
Indices: 82314045--82314147 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
82314035 GGGACAAGAT
* *
82314045 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
82314074 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
82314103 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
82314132 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82314148 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Done.