Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 276 of 328
Found at i:82596379 original size:39 final size:40
Alignment explanation
Indices: 82596320--82596401 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 40
82596310 GGTTATATAT
* * * * * *
82596320 TATTTTTATAATATTATATGTTATGATTTTTATTAATTTA
1 TATTTTAATAATAATATATGTTAAGAATGTTATTAAATTA
82596360 TATTTTAATAATAAT-TATGTTAAGAATGTTATTAAATTA
1 TATTTTAATAATAATATATGTTAAGAATGTTATTAAATTA
82596399 TAT
1 TAT
82596402 GTTATTTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 23 0.64
40 13 0.36
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (40 bp):
TATTTTAATAATAATATATGTTAAGAATGTTATTAAATTA
Found at i:82596423 original size:59 final size:55
Alignment explanation
Indices: 82596345--82596499 Score: 195
Period size: 59 Copynumber: 2.7 Consensus size: 55
82596335 ATATGTTATG
* * *
82596345 ATTTTTATTAATTTATATTTTAATAATAATTATGTTAAGAATGTTATTAAATTATATGT
1 ATTTTTATTAAATTATA-TTTAATAATAATTATGTTAA-AATATGATTAAATTAT-T-T
*
82596404 -TATTTTATTAAATTGTATTTAATTAATAATTATGTTAAAATATGATTAAATTATTT
1 AT-TTTTATTAAATTATATTTAA-TAATAATTATGTTAAAATATGATTAAATTATTT
* *
82596460 ATTTTTATTAAATTATATTTAATAATAATTTTATTAAAAT
1 ATTTTTATTAAATTATATTTAATAATAATTATGTTAAAAT
82596500 TTAATAACAA
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
55 16 0.19
56 20 0.23
57 2 0.02
58 20 0.23
59 28 0.33
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (55 bp):
ATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTT
Found at i:82597822 original size:42 final size:42
Alignment explanation
Indices: 82597763--82597868 Score: 169
Period size: 42 Copynumber: 2.5 Consensus size: 42
82597753 AAATTAGGTT
*
82597763 TAATATCATAAAAATTAAAATAGGATGAAATGATTAACTAAA
1 TAATATCATAAAAATTAAAATAGGATGAAATGATTAACGAAA
82597805 TAATATCATAAAAATTAAAATAGGATGAAATGATTAACGAAA
1 TAATATCATAAAAATTAAAATAGGATGAAATGATTAACGAAA
* *
82597847 TAATAATGATAATAA-TAAAATA
1 TAAT-ATCATAAAAATTAAAATA
82597869 TTAAAATAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 52 0.87
43 8 0.13
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.28
Consensus pattern (42 bp):
TAATATCATAAAAATTAAAATAGGATGAAATGATTAACGAAA
Found at i:82597840 original size:19 final size:19
Alignment explanation
Indices: 82597776--82597841 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
82597766 TATCATAAAA
82597776 ATTAAAATAGGATGAAATG
1 ATTAAAATAGGATGAAATG
** * **
82597795 ATTAACTAAATAATATCATAAAA
1 ATT-A--AAATAGGATGA-AATG
82597818 ATTAAAATAGGATGAAATG
1 ATTAAAATAGGATGAAATG
82597837 ATTAA
1 ATTAA
82597842 CGAAATAATA
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 10 0.30
20 9 0.27
22 9 0.27
23 5 0.15
ACGTcount: A:0.56, C:0.03, G:0.12, T:0.29
Consensus pattern (19 bp):
ATTAAAATAGGATGAAATG
Found at i:82604038 original size:18 final size:18
Alignment explanation
Indices: 82604011--82604081 Score: 97
Period size: 18 Copynumber: 3.9 Consensus size: 18
82604001 CCCAACTACT
*
82604011 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* *
82604029 GTATATGTGAATAGTGCC
1 GTATACGTGAATAGTACC
* *
82604047 ATATACGTGAATAGTATC
1 GTATACGTGAATAGTACC
82604065 GTATACGTGAATAGTAC
1 GTATACGTGAATAGTAC
82604082 TGTAAACGAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:82604673 original size:18 final size:18
Alignment explanation
Indices: 82604646--82604698 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
82604636 CCCAACTACT
* *
82604646 GTATACGTGAACAGTACC
1 GTATAAGTGAATAGTACC
* *
82604664 GTATATGTGAATAGTGCC
1 GTATAAGTGAATAGTACC
*
82604682 ATATAAGTGAATAGTAC
1 GTATAAGTGAATAGTAC
82604699 TGTAAACGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (18 bp):
GTATAAGTGAATAGTACC
Found at i:82605072 original size:617 final size:624
Alignment explanation
Indices: 82603881--82605135 Score: 2263
Period size: 617 Copynumber: 2.0 Consensus size: 624
82603871 TAAGACATCC
82603881 AGGATCTCACATTGCCACATACCAAAATTATTGGTACCGTCAAATTTCTCTACTTCAAATTTTGC
1 AGGATCTCACATTGCCACATACCAAAATTATTGGTACCGTCAAATTTCTCTACTTCAAATTTTGC
82603946 ATTTGTCACAGTAGTCCTTGCTGATGACGATGCTGCTGCCATTTTTCTCCTCAATCCCAACTACT
66 ATTTGTCACAGTAGTCCTTGCTGATGACGATGCTGCTGCCATTTTTCTCCTCAATCCCAACTACT
82604011 GTATACGTGAACAGTACCGTATATGTGAATAGTGCCATATACGTGAATAGTATCGTATACGTGAA
131 GTATACGTGAACAGTACCGTATATGTGAATAGTGCC----AC----A-AGTA-C-TATACGTGAA
* * *
82604076 TAGTACTGTAAACGATCGTATTCTCTAAGTACGAATCTGGCTCTGATACCAATTGTTGCGCGGAA
185 TAGTACTGTAAACGATCGTATTCTCCAAGTACGAATCTGACTCTGATACCAATTGTTGCGCGAAA
*
82604141 GCGTGTGAAAGAGTAAAATTATTGTACTAAAAAATCACACTAAGTTCAATTCCTAGGAAAGAGAG
250 GCGTGTGAAAGAGTAAAATTATTGTACTAAAAAATCACACTAAGTTCAATTCCTAAGAAAGAGAG
82604206 GTGGATCACGAGGATCACTTAAGTACCAAGTCTTTCCTAGCCAGAATATCCCTTTATCGTAATTT
315 GTGGATCACGAGGATCACTTAAGTACCAAGTCTTTCCTAGCCAGAATATCCCTTTATCGTAATTT
82604271 AATAGCACAATAAATCACTACAATCACATTCACAAAATATGAACAATAAATAGTAAAGAACACCA
380 AATAGCACAATAAATCACTACAATCACATTCACAAAATATGAACAATAAATAGTAAAGAACACCA
82604336 GAATTTTAACGAGGTTCGGCAAATCTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCC
445 GAATTTTAACGAGGTTCGGCAAATCTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCC
82604401 AAAATACAAGTGAAACTTTACAAATAGGGAGAGAGAACAATGCCTTAAGTAGAGAATGGCAAATA
510 AAAATACAAGTGAAACTTTACAAATAGGGAGAGAGAACAATGCCTTAAGTAGAGAATGGCAAATA
82604466 TGGGATGATTAGAATCAGCAAAGGTTAGGCCTATTTATAGTTGAGGTTCA
575 TGGGATGATTAGAATCAGCAAAGGTTAGGCCTATTTATAGTTGAGGTTCA
*
82604516 AGGATCTCACATTGCCACATACCAAAATTATTGGTACCGTCAAATTTCTTTACTTCAAATTTTGC
1 AGGATCTCACATTGCCACATACCAAAATTATTGGTACCGTCAAATTTCTCTACTTCAAATTTTGC
*
82604581 ATTTGTCACAGTAGTCCTTGCTGATGACGATGCTGTTGCCATTTTTCTCCTCAATCCCAACTACT
66 ATTTGTCACAGTAGTCCTTGCTGATGACGATGCTGCTGCCATTTTTCTCCTCAATCCCAACTACT
82604646 GTATACGTGAACAGTACCGTATATGTGAATAGTG-C-C-A-TA-TA-A-GTGAATAGTACTGTAA
131 GTATACGTGAACAGTACCGTATATGTGAATAGTGCCACAAGTACTATACGTGAATAGTACTGTAA
*
82604704 ACGGTCGTATTCTCCAAGTACGAATCTGACTCTGATACCAATTGTTGCGCGAAAGCGTGTGAAAG
196 ACGATCGTATTCTCCAAGTACGAATCTGACTCTGATACCAATTGTTGCGCGAAAGCGTGTGAAAG
*
82604769 AGTAAAATTATTGTACTAAAAAATCACACTAAGTTTAATTCCTAAGAAAGAGAGGTGGATCACGA
261 AGTAAAATTATTGTACTAAAAAATCACACTAAGTTCAATTCCTAAGAAAGAGAGGTGGATCACGA
82604834 GGATCACTTAAGTACCAAGTCTTTCCTAGCCAGAATATCCCTTTATCGTAATTTAATAGCACAAT
326 GGATCACTTAAGTACCAAGTCTTTCCTAGCCAGAATATCCCTTTATCGTAATTTAATAGCACAAT
82604899 AAATCACTACAATCACATTCACAAAATATGAACAATAAATAGTAAAGAACACCAGAATTTTAACG
391 AAATCACTACAATCACATTCACAAAATATGAACAATAAATAGTAAAGAACACCAGAATTTTAACG
82604964 AGGTTCGGCAAATCTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCCAAAATACAAGT
456 AGGTTCGGCAAATCTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCCAAAATACAAGT
* *
82605029 GAAATTTTACAAATAGGGAGAGAGAACAATGCCTTAAGTAGAGAATGGCAAATGTGGGATGATTA
521 GAAACTTTACAAATAGGGAGAGAGAACAATGCCTTAAGTAGAGAATGGCAAATATGGGATGATTA
*
82605094 GAATGAGCAAAGGTTAGGCCTATTTATAGTTGAGGTTCA
586 GAATCAGCAAAGGTTAGGCCTATTTATAGTTGAGGTTCA
82605133 AGG
1 AGG
82605136 GCCACCTTGC
Statistics
Matches: 609, Mismatches: 11, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
617 439 0.72
618 1 0.00
619 2 0.00
622 2 0.00
623 1 0.00
629 1 0.00
634 1 0.00
635 162 0.27
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (624 bp):
AGGATCTCACATTGCCACATACCAAAATTATTGGTACCGTCAAATTTCTCTACTTCAAATTTTGC
ATTTGTCACAGTAGTCCTTGCTGATGACGATGCTGCTGCCATTTTTCTCCTCAATCCCAACTACT
GTATACGTGAACAGTACCGTATATGTGAATAGTGCCACAAGTACTATACGTGAATAGTACTGTAA
ACGATCGTATTCTCCAAGTACGAATCTGACTCTGATACCAATTGTTGCGCGAAAGCGTGTGAAAG
AGTAAAATTATTGTACTAAAAAATCACACTAAGTTCAATTCCTAAGAAAGAGAGGTGGATCACGA
GGATCACTTAAGTACCAAGTCTTTCCTAGCCAGAATATCCCTTTATCGTAATTTAATAGCACAAT
AAATCACTACAATCACATTCACAAAATATGAACAATAAATAGTAAAGAACACCAGAATTTTAACG
AGGTTCGGCAAATCTTGCCTACGTCCTCGGGCACTACCAAATATATTTCACTCCAAAATACAAGT
GAAACTTTACAAATAGGGAGAGAGAACAATGCCTTAAGTAGAGAATGGCAAATATGGGATGATTA
GAATCAGCAAAGGTTAGGCCTATTTATAGTTGAGGTTCA
Found at i:82609157 original size:17 final size:17
Alignment explanation
Indices: 82609132--82609169 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
82609122 GTTATGTGAA
82609132 AAATCAAA-TAAAAAATT
1 AAATCAAATTAAAAAA-T
*
82609149 AAATTAAATTAAAAAAT
1 AAATCAAATTAAAAAAT
82609166 AAAT
1 AAAT
82609170 AAGCATGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATCAAATTAAAAAAT
Found at i:82609659 original size:29 final size:30
Alignment explanation
Indices: 82609627--82609690 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
82609617 ATAGTTCAAA
*
82609627 TACTACATT-AGATATTT-TCAAAGTACAAG
1 TACTACATTGA-ACATTTATCAAAGTACAAG
* *
82609656 TACTACATTGAACATTTATGAAAGTACATG
1 TACTACATTGAACATTTATCAAAGTACAAG
82609686 TACTA
1 TACTA
82609691 AATGTGATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 14 0.47
30 16 0.53
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (30 bp):
TACTACATTGAACATTTATCAAAGTACAAG
Found at i:82615123 original size:28 final size:28
Alignment explanation
Indices: 82615054--82615154 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
82615044 GACAAGATTG
* * * *
82615054 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
82615084 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
82615112 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
82615141 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
82615155 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:82620852 original size:20 final size:21
Alignment explanation
Indices: 82620815--82620853 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82620805 GGGCCCAAAT
82620815 AATAAATAAAACCCAAAACCA
1 AATAAATAAAACCCAAAACCA
*
82620836 AATAAGTAAAA-CCAAAAC
1 AATAAATAAAACCCAAAAC
82620854 ATAAAAAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.67, C:0.21, G:0.03, T:0.10
Consensus pattern (21 bp):
AATAAATAAAACCCAAAACCA
Found at i:82621533 original size:2 final size:2
Alignment explanation
Indices: 82621512--82621599 Score: 128
Period size: 2 Copynumber: 45.5 Consensus size: 2
82621502 GCCATAGCTG
* *
82621512 GA GA -A GA GA TA GA CA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
82621553 GA GA GA GA GA GA GA GA -A GA GA GA GA GA GA GA GA GA GA G- GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
82621593 GA GA GA G
1 GA GA GA G
82621600 CATTTTTCTG
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
1 3 0.04
2 75 0.96
ACGTcount: A:0.49, C:0.01, G:0.49, T:0.01
Consensus pattern (2 bp):
GA
Found at i:82622249 original size:3 final size:3
Alignment explanation
Indices: 82622241--82622286 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
82622231 ATCTACTTAT
82622241 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
82622287 CATTTTTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:82622357 original size:8 final size:8
Alignment explanation
Indices: 82622346--82622452 Score: 58
Period size: 9 Copynumber: 13.0 Consensus size: 8
82622336 TTATTTTCAA
82622346 ATTTTTTT
1 ATTTTTTT
82622354 A-TTTTTT
1 ATTTTTTT
*
82622361 -TGTTTTT
1 ATTTTTTT
*
82622368 ATTTGTTT
1 ATTTTTTT
**
82622376 ATTTACTT
1 ATTTTTTT
82622384 ATTTTTTAT
1 ATTTTTT-T
* *
82622393 AATTTGTT
1 ATTTTTTT
82622401 ATTTTATTT
1 ATTTT-TTT
*
82622410 -TTATTTT
1 ATTTTTTT
82622417 ATTTCTTTT
1 ATTT-TTTT
*
82622426 ATTATTTAT
1 ATT-TTTTT
*
82622435 CTTATTTTT
1 ATT-TTTTT
82622444 AATTTTTTT
1 -ATTTTTTT
82622453 GCTCTTGTTA
Statistics
Matches: 74, Mismatches: 17, Indels: 15
0.70 0.16 0.14
Matches are distributed among these distances:
7 14 0.19
8 27 0.36
9 30 0.41
10 3 0.04
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (8 bp):
ATTTTTTT
Found at i:82622368 original size:14 final size:14
Alignment explanation
Indices: 82622349--82622452 Score: 66
Period size: 14 Copynumber: 6.9 Consensus size: 14
82622339 TTTTCAAATT
*
82622349 TTTTTATTTTTTTG
1 TTTTTATTTTTTTA
*
82622363 TTTTTATTTGTTTA
1 TTTTTATTTTTTTA
82622377 TTTACTTA-TTTTTTA
1 TTT--TTATTTTTTTA
* * *
82622392 TAATTTGTTATTTTA
1 T-TTTTATTTTTTTA
*
82622407 TTTTTATTTTATTTCT
1 TTTTTATTTT-TTT-A
*
82622423 TTTATTATTTATCTTA
1 TTT-TTATTT-TTTTA
82622439 TTTTTAATTTTTTT
1 TTTTT-ATTTTTTT
82622453 GCTCTTGTTA
Statistics
Matches: 68, Mismatches: 13, Indels: 17
0.69 0.13 0.17
Matches are distributed among these distances:
14 23 0.34
15 22 0.32
16 14 0.21
17 8 0.12
18 1 0.01
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTTTATTTTTTTA
Found at i:82622388 original size:38 final size:36
Alignment explanation
Indices: 82622289--82622390 Score: 98
Period size: 38 Copynumber: 2.8 Consensus size: 36
82622279 ATTATTATCA
* *
82622289 TTTTTAATTGTTTTATTTA-ATATTTCTTTATTCTTT
1 TTTTTATTTG-TTTATTTACATATTTTTTTATTCTTT
* * * * *
82622325 TCTTTATTTGCTTATTTTCAAATTTTTTTATTTTTTT
1 TTTTTATTTGTTTATTTACATATTTTTTTA-TTCTTT
*
82622362 GTTTTTATTTGTTTATTTACTTATTTTTT
1 -TTTTTATTTGTTTATTTACATATTTTTT
82622391 ATAATTTGTT
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
35 6 0.12
36 17 0.33
37 5 0.10
38 23 0.45
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.74
Consensus pattern (36 bp):
TTTTTATTTGTTTATTTACATATTTTTTTATTCTTT
Found at i:82622418 original size:16 final size:16
Alignment explanation
Indices: 82622399--82622449 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
82622389 TTATAATTTG
82622399 TTATTTTATTTTTATT
1 TTATTTTATTTTTATT
82622415 TTATTTCT-TTTATTA-T
1 TTATTT-TATTT-TTATT
*
82622431 TTATCTTATTTTTAATT
1 TTATTTTATTTTT-ATT
82622448 TT
1 TT
82622450 TTTGCTCTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
15 3 0.10
16 19 0.66
17 7 0.24
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTATTTTTATT
Found at i:82622433 original size:21 final size:20
Alignment explanation
Indices: 82622402--82622441 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
82622392 TAATTTGTTA
*
82622402 TTTTATTTTTATTTTATTTC
1 TTTTATTTTTATCTTATTTC
82622422 TTTTATTATTTATCTTATTT
1 TTTTATT-TTTATCTTATTT
82622442 TTAATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTATTTTTATCTTATTTC
Found at i:82622464 original size:33 final size:32
Alignment explanation
Indices: 82622399--82622464 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 32
82622389 TTATAATTTG
* *
82622399 TTATTTTATTTTTATTTTATTTCTTTTATTAT
1 TTATCTTATTTTTATTTTATTTCTCTTATTAT
*
82622431 TTATCTTATTTTTAATTTT-TTTGCTCTTGTTAT
1 TTATCTTATTTTT-ATTTTATTT-CTCTTATTAT
82622464 T
1 T
82622465 GTTATTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (32 bp):
TTATCTTATTTTTATTTTATTTCTCTTATTAT
Found at i:82628843 original size:51 final size:51
Alignment explanation
Indices: 82628767--82628864 Score: 178
Period size: 51 Copynumber: 1.9 Consensus size: 51
82628757 GAGAGCATTC
*
82628767 AATGGTACTGAAAGAAAGGTGATGGGAAGGATTGAGATACCTCTTTTATTT
1 AATGGTACCGAAAGAAAGGTGATGGGAAGGATTGAGATACCTCTTTTATTT
*
82628818 AATGGTACCGAAAGAAAGGTGATGGGAAGGATTGAGATACCTTTTTT
1 AATGGTACCGAAAGAAAGGTGATGGGAAGGATTGAGATACCTCTTTT
82628865 GCTTGGTCCA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (51 bp):
AATGGTACCGAAAGAAAGGTGATGGGAAGGATTGAGATACCTCTTTTATTT
Found at i:82634243 original size:44 final size:44
Alignment explanation
Indices: 82634191--82634308 Score: 155
Period size: 44 Copynumber: 2.7 Consensus size: 44
82634181 GTTATTATGG
*
82634191 CGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGCCA
1 CGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGACA
* * * * *
82634235 CTAATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTGAAGATA
1 CGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGACA
* * *
82634279 CGAATCTTATTTCCTTGAAGTTGCAGTGGA
1 CGAATCTTATCTCCCTAAAGTTGCAGTGGA
82634309 ATAGATTAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (44 bp):
CGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGACA
Found at i:82634489 original size:189 final size:184
Alignment explanation
Indices: 82634187--82634778 Score: 609
Period size: 184 Copynumber: 3.2 Consensus size: 184
82634177 TGAAGTTATT
* * * * * * * *
82634187 ATGGCGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGCCACT-AATCTTATCTTCCT
1 ATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCA-TAAACCTTATCTCCCT
* ** * * * * * *
82634251 AAAGTTGCAGTGGAGTAGATTGAAGA-TACGAA-TCTTATTTCCTTGAAGTTGCAGTGGAATAGA
65 GAAGTTATAGTGGAGCAGATTGAA-ACGAC-AAGTCTTATCTCCCTGAAGTTGCAATGGAACAGA
* * * * **** * *
82634314 TTAAAGCTACAAGGCACAAATCCTA-TACCTTTGGAGTTGCAGTAGGTTGGATCAAATCT-AAC
128 CTAAAG--A-AA-G--CAAATCCTATTACC-CTGAAGTTACAGTAGAACAGATCAAAGCTAAAA
82634376 ATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTG
1 ATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTG
* * *
82634441 AAGTTATAGTGGAGCAGGTTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTG
66 AAGTTATAGTGGAGCAGATTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAACAGACTA
* * * * *
82634506 AAGATAGCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTAAAA
131 AAGAAAGCAAATCCTATTACCCTGAAGTTACAGTAGAACAGATCAAAGCTAAAA
**
82634560 ATTACGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTG
1 ATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTG
* * *
82634625 AAGTTATAGTGGAGCAGTTTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTG
66 AAGTTATAGTGGAGCAGATTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAACAGACTA
* * * * * *
82634690 AAGATAGCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTACAA
131 AAGAAAGCAAATCCTATTACCCTGAAGTTACAGTAGAACAGATCAAAGCTAAAA
** * *
82634744 ATTACAAATCTTATCTCCCTGAAGTTACAGTGGAG
1 ATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAG
82634779 CAGGTTGAAA
Statistics
Matches: 357, Mismatches: 41, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
183 27 0.08
184 218 0.61
185 1 0.00
186 1 0.00
187 1 0.00
188 4 0.01
189 105 0.29
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (184 bp):
ATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTG
AAGTTATAGTGGAGCAGATTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAACAGACTA
AAGAAAGCAAATCCTATTACCCTGAAGTTACAGTAGAACAGATCAAAGCTAAAA
Found at i:82634533 original size:45 final size:44
Alignment explanation
Indices: 82634379--82634859 Score: 248
Period size: 44 Copynumber: 10.5 Consensus size: 44
82634369 ATCTAACATG
*
82634379 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACT-AAA-A
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAATA
* * * ** ** *
82634421 CCATAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGGTTGAAA-C
1 GC--GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAATA
*
82634466 GAC-AAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATA
1 G-CGAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-ATA
* * * * *
82634512 GCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTAAAAATTA
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-----A-CT-GAAA-TA
*
82634564 -CGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACT-AAA-A
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAATA
* * * ** ** *
82634605 CCATAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGTTTGAAA-C
1 GC--GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAATA
*
82634650 GAC-AAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATA
1 G-CGAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-ATA
* * * * *
82634696 GCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTACAAATTA
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-----A-CT-GAAA-TA
* * **
82634748 -CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAAATTA
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAA-TA
** * *
82634792 TAG-ATCTTATCTCCCTGAAGGTGCAGTGGAGTAGA-TCGAATATA
1 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAA-ATA
* * *
82634836 GCAAATCTTATCTCTCTAAAGTTG
1 GCGAATCTTATCTCCCTGAAGTTG
82634860 AGGTATGTGA
Statistics
Matches: 333, Mismatches: 69, Indels: 71
0.70 0.15 0.15
Matches are distributed among these distances:
41 1 0.00
42 2 0.01
43 8 0.02
44 157 0.47
45 81 0.24
46 9 0.03
50 2 0.01
51 65 0.20
52 8 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAATA
Found at i:82634587 original size:96 final size:95
Alignment explanation
Indices: 82634467--82634781 Score: 371
Period size: 96 Copynumber: 3.4 Consensus size: 95
82634457 GGTTGAAACG
82634467 ACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAA
1 ACAA-TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAA
82634532 GTTACAGTAGAACAGATTAAAGCTAAAAATT
65 GTTACAGTAGAACAGATTAAAGCTAAAAATT
* * * * * *
82634563 ACGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACT-AA-A-ACCATAAACCTTATCTCCCTG
1 AC-AATCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGC--GAATCTTATTTCCCTG
* * * * **
82634625 AAGTTATAGTGGAGCAG-TT-----T-GAAACG
63 AAGTTACAGTAGAACAGATTAAAGCTAAAAATT
82634651 ACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAA
1 ACAA-TCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAA
*
82634716 GTTACAGTAGAACAGATTAAAGCTACAAATT
65 GTTACAGTAGAACAGATTAAAGCTAAAAATT
* *
82634747 ACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAG
1 AC-AATCTTATCTCCCTGAAGTTGCAATGGAGCAG
82634782 GTTGAAATTA
Statistics
Matches: 178, Mismatches: 26, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
87 2 0.01
88 36 0.20
89 30 0.17
90 3 0.02
91 2 0.01
93 2 0.01
94 3 0.02
95 30 0.17
96 66 0.37
97 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (95 bp):
ACAATCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
TTACAGTAGAACAGATTAAAGCTAAAAATT
Found at i:82634599 original size:184 final size:184
Alignment explanation
Indices: 82634380--82634778 Score: 762
Period size: 184 Copynumber: 2.2 Consensus size: 184
82634370 TCTAACATGG
82634380 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTGAAGT
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTGAAGT
82634445 TATAGTGGAGCAGGTTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGA
66 TATAGTGGAGCAGGTTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGA
82634510 TAGCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTAAAAATTA
131 TAGCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTAAAAATTA
82634564 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTGAAGT
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTGAAGT
*
82634629 TATAGTGGAGCAGTTTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGA
66 TATAGTGGAGCAGGTTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGA
*
82634694 TAGCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTACAAATTA
131 TAGCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTAAAAATTA
* *
82634748 CAAATCTTATCTCCCTGAAGTTACAGTGGAG
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAG
82634779 CAGGTTGAAA
Statistics
Matches: 211, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 211 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (184 bp):
CGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAACCATAAACCTTATCTCCCTGAAGT
TATAGTGGAGCAGGTTGAAACGACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGA
TAGCGAATCTTATTTCCCTGAAGTTACAGTAGAACAGATTAAAGCTAAAAATTA
Found at i:82636667 original size:29 final size:29
Alignment explanation
Indices: 82636566--82636659 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
82636556 GTGACGAGAT
* * *
82636566 TGGCATTAAGTGTCCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
82636595 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
82636624 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
82636653 CGGCACT
1 TGGCACT
82636660 GGGTGTGCGA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:82636684 original size:58 final size:58
Alignment explanation
Indices: 82636562--82636696 Score: 148
Period size: 58 Copynumber: 2.3 Consensus size: 58
82636552 TACGGTGACG
* * * * *
82636562 AGAT-TGGCATTAAGTGTCCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
82636619 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
82636677 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
82636697 GGGCTTAAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
57 3 0.05
58 60 0.94
59 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:82644651 original size:29 final size:29
Alignment explanation
Indices: 82644618--82644778 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
82644608 GTGATGAGAT
82644618 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
82644647 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
82644676 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
82644705 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
82644734 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
82644763 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82644779 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 110 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:82647625 original size:23 final size:22
Alignment explanation
Indices: 82647580--82647625 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
82647570 CAACCAATCC
*
82647580 AATTCAACATATTTTCAAGATA
1 AATTCAACATATTTTCAAAATA
82647602 AATTCATACATATTTAT-AAAATA
1 AATTCA-ACATATTT-TCAAAATA
82647625 A
1 A
82647626 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (22 bp):
AATTCAACATATTTTCAAAATA
Found at i:82649947 original size:916 final size:917
Alignment explanation
Indices: 82647883--82651554 Score: 6571
Period size: 916 Copynumber: 4.0 Consensus size: 917
82647873 GTAACAAGAA
*
82647883 TTATACTTACCTAATATTTTCAATACAATACAATACAACAAACATTCATATATCCATTCAATGCA
1 TTATACTTACCTAATATTTTCAATACAATACAATACAATAAACATTCATATATCCATTCAATGCA
* *
82647948 TTATTA-CCTAATATGCACAAACTCAACATTTAAGTTAGTACAAAAATTTCCATATACCAATAAT
66 TTATTACCCTAATATGCACAAACTCAACATTCAAGTTAGTACAAAAATTTCCATGTACCAATAAT
82648012 ATATACCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTTGTTATTTTTCCATATTT
131 ATATACCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTTGTTATTTTTCCATATTT
82648077 ATCCCGTTGAATTTATCGGAATTTCGATGGATTTTCAGAGGTACACTTTTAGTGTACATTTCCGG
196 ATCCCGTTGAATTTATCGGAATTTCGATGGATTTTCAGAGGTACACTTTTAGTGTACATTTCCGG
* * *
82648142 GTCCGTCAATTCTTATTCATGTGCGCACATTTCCATTTCAGATAGCACACTCCCGCGAATCTTAA
261 GTCCGTCAATTCTTATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTCCCGCGAACCTCAA
*
82648207 CCTTGCAGCGGGATTACCAGTCCAAGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGTCGG
326 CCTTGCAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGTCGG
* * *
82648272 GATCACCAGTCCAGGCTAAATCCCCTTCAACGACAACTACTCTAATGAGCTTGGATCTGACTTAC
391 GATTACCAGTCCAGGCTAAATCCCCTGCAACGACAATTACTCTAATGAGCTTGGATCTGACTTAC
*
82648337 CAG-TCTAGGCTAAATTCAGACCCTAATTCGGATTACCTGTCCGGGCTAAATCCATTTTCCACAT
456 CAGTTC-AGGCTAAATTCAGACCCTAATTCGGATTACCCGTCCGGGCTAAATCCATTTTCCACAT
82648401 ATTCTTCGGGAGGGCTATATCAGAATAGGATCACCCGTCCGGGCTAGATCCTTTTTACCGTCAAT
520 ATTCTTCGGGAGGGCTATATCAGAATAGGATCACCCGTCCGGGCTAGATCCTTTTTACCGTCAAT
82648466 TCCTTTTCAGAGATCCATCGAATTTTCCTTTCATTCAACCGGGATTTCTTCCCCTTTTATCAAAT
585 TCCTTTTCAGAGATCCATCGAATTTTCCTTTCATTCAACCGGGATTTCTTCCCCTTTTATCAAAT
82648531 ATATCAATGTTTCATAAATTTCCATATAATGAACATTCAAATCATATTCATATAAAAAACATGCA
650 ATATCAATGTTTCATAAATTTCCATATAATGAACATTCAAATCATATTCATATAAAAAACATGCA
*
82648596 TTTCAAGCATTTAAGAATATAAGTCAAGTTACATGAACTTACCTTGATACTTGTTTGTAAAC-AA
715 TTTCAAGCATTTAAGAATATAATTCAAGTTACATGAACTTACCTTGATACTTGTTTGTAAACAAA
* * *
82648660 AAAAATCTACTAATCCGGAACTTTTTCCTTTCCTCGATCTAGGTTCGTTTTTGAATCTTCTGGAT
780 AAAAATCTACTAATCCTGAACTTTTTCCTTTCCTCGATCTAGCTTCGTATTTGAATCTTCTGGAT
82648725 CTAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATGCAACATTCTCTATAAT
845 CTAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATGCAACATTCTCTATAAT
82648790 TCAACTAT
910 TCAACTAT
**
82648798 TTATACTTACCTAATATTTTCAATACAATACAATACAATAAACATTCATATATCCATTCGGTGCA
1 TTATACTTACCTAATATTTTCAATACAATACAATACAATAAACATTCATATATCCATTCAATGCA
82648863 TTATTACCCTAATATGCACAAACTCAACATTCAAGTTAGTACAAAAATTTCCATGTACCAATAAT
66 TTATTACCCTAATATGCACAAACTCAACATTCAAGTTAGTACAAAAATTTCCATGTACCAATAAT
* *
82648928 ATATATCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTAGTTATTTTTCCATATTT
131 ATATACCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTTGTTATTTTTCCATATTT
* *
82648993 CTCCCGTTGAATTTATCGGAATTTCGGTGGATTTTCAGAGGTACACTTTTAGTGTACATTTCCGG
196 ATCCCGTTGAATTTATCGGAATTTCGATGGATTTTCAGAGGTACACTTTTAGTGTACATTTCCGG
* * *
82649058 GTCCGTCAATTCTTATTCATGTGCGTACATTTCCATTTCAGAGAGCACACTCCGGCAAACCTCAA
261 GTCCGTCAATTCTTATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTCCCGCGAACCTCAA
*
82649123 CCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGTCGG
326 CCTTGCAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGTCGG
*
82649188 GATTACCAGTCCAGGCTAAATCCCCTGCAACAACAATTACTCTAATGAGCTTGGATCTGACTTAC
391 GATTACCAGTCCAGGCTAAATCCCCTGCAACGACAATTACTCTAATGAGCTTGGATCTGACTTAC
* * **
82649253 CAGTTCAGGCTAAATTCAGACCCTAATTCGGATAACCCGTCTGGGCTAAATCCATTTTTGACATA
456 CAGTTCAGGCTAAATTCAGACCCTAATTCGGATTACCCGTCCGGGCTAAATCCATTTTCCACATA
* * *
82649318 TTCTTTGGGAGGGCTATATCAGAATAGGATCACTCGTCCGAGCTAGATCCTTTTTACCGTCAATT
521 TTCTTCGGGAGGGCTATATCAGAATAGGATCACCCGTCCGGGCTAGATCCTTTTTACCGTCAATT
* *
82649383 CCTTTTCAGAGATCCATCGAATTTTCCTTTCATTTAACCGGGATTTCTTCCCCTTTTAACAAATA
586 CCTTTTCAGAGATCCATCGAATTTTCCTTTCATTCAACCGGGATTTCTTCCCCTTTTATCAAATA
*
82649448 TATCAATGTTTCATAAATTTCCATATAATGAACATTCAAATCATATTCATATCAAAAACATGCAT
651 TATCAATGTTTCATAAATTTCCATATAATGAACATTCAAATCATATTCATATAAAAAACATGCAT
82649513 TTCAAGCATTTAAGAATATAATTCAAGTTACATGAACTTACCTTGATACTTGTTTGTAAACAAAA
716 TTCAAGCATTTAAGAATATAATTCAAGTTACATGAACTTACCTTGATACTTGTTTGTAAACAAAA
* *
82649578 AAAATCTACTAATCCTGAACTTTTTCATTTCCTCGATCTAGCTTCTTATTTGAATCTTCTGGATC
781 AAAATCTACTAATCCTGAACTTTTTCCTTTCCTCGATCTAGCTTCGTATTTGAATCTTCTGGATC
*
82649643 TAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATTCAACATTCTCTATAATT
846 TAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATGCAACATTCTCTATAATT
82649708 CAACTAT
911 CAACTAT
* *
82649715 TTATACTTACCTAATATTTTCAATACAATACAATACAATAAACATTTATATATCCATTCAGTGCA
1 TTATACTTACCTAATATTTTCAATACAATACAATACAATAAACATTCATATATCCATTCAATGCA
82649780 TTATTACCCTAATATGCACAAACTCAACATTCAAGTTAGTACAAAAATTTCCATGTACCAATAAT
66 TTATTACCCTAATATGCACAAACTCAACATTCAAGTTAGTACAAAAATTTCCATGTACCAATAAT
*
82649845 ATATACCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTTGTTATTTTTCCATTTTT
131 ATATACCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTTGTTATTTTTCCATATTT
*
82649910 ATCCCGTTGAATTTATCGGAATTTTGATGGA-TTTCAGAGGTACACTTTTAGTGTACATTTCCGG
196 ATCCCGTTGAATTTATCGGAATTTCGATGGATTTTCAGAGGTACACTTTTAGTGTACATTTCCGG
* *
82649974 GTCCGTCAATTCTTATTCATGTGCGCACATTTTCATTTCAAAGAGCACACTCCCGCGAACCTCAA
261 GTCCGTCAATTCTTATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTCCCGCGAACCTCAA
*
82650039 CCTTGCAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAAAGTATTGTCGG
326 CCTTGCAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGTCGG
*
82650104 GATTACCAGTCTAGGCTAAATCCCCTGCAACGACAATTACTCTAATGAGCTTGGATCTGACTTAC
391 GATTACCAGTCCAGGCTAAATCCCCTGCAACGACAATTACTCTAATGAGCTTGGATCTGACTTAC
* *
82650169 CAGTTCAGGCTAAATTCAGACCCTAATTCGAATTACCCGTCCGAGCTAAATCCATTTTCCACATA
456 CAGTTCAGGCTAAATTCAGACCCTAATTCGGATTACCCGTCCGGGCTAAATCCATTTTCCACATA
* *
82650234 TTCTTCGGGAGGGCTATATCAGGATAGGATCACCCATCCGGGCTAGATCCTTTTTACCGTCAATT
521 TTCTTCGGGAGGGCTATATCAGAATAGGATCACCCGTCCGGGCTAGATCCTTTTTACCGTCAATT
*
82650299 CCTTTTCAGAGATCCATCGAATTTTCCTTTTATTCAACCGGGATTTCTTCCCCTTTTATCAAATA
586 CCTTTTCAGAGATCCATCGAATTTTCCTTTCATTCAACCGGGATTTCTTCCCCTTTTATCAAATA
82650364 TATCAATGTTTCATAAATTTCCATATAATGAACATTCAAATCATATTCATATAAAAAACATGCAT
651 TATCAATGTTTCATAAATTTCCATATAATGAACATTCAAATCATATTCATATAAAAAACATGCAT
82650429 TTCAAGCATTTAAGAATATAATTCAAGTTACATGAACTTACCTTGATACTTGTTTGTAAACAAAA
716 TTCAAGCATTTAAGAATATAATTCAAGTTACATGAACTTACCTTGATACTTGTTTGTAAACAAAA
*
82650494 AAAATCTACTAATCCTGAACTTTTTCCTTTCCTCGATCTAGTTTCGTATTTGAATCTTCTGGATC
781 AAAATCTACTAATCCTGAACTTTTTCCTTTCCTCGATCTAGCTTCGTATTTGAATCTTCTGGATC
*
82650559 TAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATGCAACAGTCTCTATAATT
846 TAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATGCAACATTCTCTATAATT
82650624 CAACTAT
911 CAACTAT
82650631 TTATACTTACCTAATATTTTCAATACAATACAATACAATACAATAAACATTCATATATCCATTCA
1 TTATACTTACCTAATA-TTT---T-CAATACAATACAATACAATAAACATTCATATATCCATTCA
82650696 ATGCATTATTACCCTAATATGCACAAACTCAACATTCAAGTTAGTACAAAAATTTCCATGTACCA
61 ATGCATTATTACCCTAATATGCACAAACTCAACATTCAAGTTAGTACAAAAATTTCCATGTACCA
82650761 ATAATATATACCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTTGTTATTTTTCCA
126 ATAATATATACCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTTGTTATTTTTCCA
* **
82650826 TATTTATCCCGTTAAATTTATCGGAATTTCGATGGAAATTCAGAGGTACACTTTTAGTGTACATT
191 TATTTATCCCGTTGAATTTATCGGAATTTCGATGGATTTTCAGAGGTACACTTTTAGTGTACATT
*
82650891 TCCTGGTCCGTCAATTCTTATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTCCCGCGAAC
256 TCCGGGTCCGTCAATTCTTATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTCCCGCGAAC
*
82650956 CTCAACCTTGCAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAGTATAAACTCATAGAGTATT
321 CTCAACCTTGCAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTA-T
*
82651021 TGTCGTGATTACCAGTCCAGGCTAAATCCCCTGCAACGACAATTACTCTAATGAGCTTGGATCTG
385 TGTCGGGATTACCAGTCCAGGCTAAATCCCCTGCAACGACAATTACTCTAATGAGCTTGGATCTG
* * * *
82651086 ACTTACCAGTCCAGGCTAAATTCAGATCCTAATTCAGATTACCCGTCCAGGCTAAATCCATTTTC
450 ACTTACCAGTTCAGGCTAAATTCAGACCCTAATTCGGATTACCCGTCCGGGCTAAATCCATTTTC
* *
82651151 CACATATTCTTCGGGAGGGCTATATAAGGATAGGATCACCCGTCCGGGCTAGATCCTTTTTACCG
515 CACATATTCTTCGGGAGGGCTATATCAGAATAGGATCACCCGTCCGGGCTAGATCCTTTTTACCG
* *
82651216 TCAATTCCTTTTCAAAGTTCCATCGAATTTTCCTTTCAATT-AACCGGGATTTCTTCCCCTTTTA
580 TCAATTCCTTTTCAGAGATCCATCGAATTTTCCTTTC-ATTCAACCGGGATTTCTTCCCCTTTTA
* * *
82651280 TCAAATATATCAATGTTTCATAAATTTCTATAAAATGAACATTCAAATCATATTCATATCAAAAA
644 TCAAATATATCAATGTTTCATAAATTTCCATATAATGAACATTCAAATCATATTCATATAAAAAA
*
82651345 CATGCATTTCAAGCATTTAAGAATATAATTCGAGTTACATGAACTTACCTTGATACTTGTTTGTA
709 CATGCATTTCAAGCATTTAAGAATATAATTCAAGTTACATGAACTTACCTTGATACTTGTTTGTA
*
82651410 AACAAAAAAAATCTACTAATCCTGAATTTTTTCCTTTCCTCGATCTAGCTTCGTATTTGAATCTT
774 AACAAAAAAAATCTACTAATCCTGAACTTTTTCCTTTCCTCGATCTAGCTTCGTATTTGAATCTT
*
82651475 CTGGATCTAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATGCAATATTCTC
839 CTGGATCTAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATGCAACATTCTC
82651540 TATAATTCAACTAT
904 TATAATTCAACTAT
82651554 T
1 T
82651555 ATTATTTATA
Statistics
Matches: 2638, Mismatches: 108, Indels: 14
0.96 0.04 0.01
Matches are distributed among these distances:
915 68 0.03
916 1348 0.51
917 357 0.14
920 1 0.00
921 201 0.08
922 150 0.06
923 510 0.19
924 3 0.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (917 bp):
TTATACTTACCTAATATTTTCAATACAATACAATACAATAAACATTCATATATCCATTCAATGCA
TTATTACCCTAATATGCACAAACTCAACATTCAAGTTAGTACAAAAATTTCCATGTACCAATAAT
ATATACCATGATTGATGAGCTCATCAATACCATGATTTCCATTTCCTTGTTATTTTTCCATATTT
ATCCCGTTGAATTTATCGGAATTTCGATGGATTTTCAGAGGTACACTTTTAGTGTACATTTCCGG
GTCCGTCAATTCTTATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTCCCGCGAACCTCAA
CCTTGCAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAATATAAACTCATAGAGTATTGTCGG
GATTACCAGTCCAGGCTAAATCCCCTGCAACGACAATTACTCTAATGAGCTTGGATCTGACTTAC
CAGTTCAGGCTAAATTCAGACCCTAATTCGGATTACCCGTCCGGGCTAAATCCATTTTCCACATA
TTCTTCGGGAGGGCTATATCAGAATAGGATCACCCGTCCGGGCTAGATCCTTTTTACCGTCAATT
CCTTTTCAGAGATCCATCGAATTTTCCTTTCATTCAACCGGGATTTCTTCCCCTTTTATCAAATA
TATCAATGTTTCATAAATTTCCATATAATGAACATTCAAATCATATTCATATAAAAAACATGCAT
TTCAAGCATTTAAGAATATAATTCAAGTTACATGAACTTACCTTGATACTTGTTTGTAAACAAAA
AAAATCTACTAATCCTGAACTTTTTCCTTTCCTCGATCTAGCTTCGTATTTGAATCTTCTGGATC
TAAATAAATAAATTTAATTATCAATTTAATACATTTCATGTTCATATGCAACATTCTCTATAATT
CAACTAT
Found at i:82650661 original size:5 final size:5
Alignment explanation
Indices: 82650651--82650675 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
82650641 CTAATATTTT
82650651 CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA
82650676 AACATTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
CAATA
Found at i:82653632 original size:3 final size:3
Alignment explanation
Indices: 82653624--82653660 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
82653614 CTCTACTTAT
*
82653624 TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
82653661 CATTTTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:82653713 original size:35 final size:35
Alignment explanation
Indices: 82653674--82653751 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
82653664 TTTTAATGGT
82653674 TTTA-TTTAATATTTCTTTATTCTTTTATTTATTTG
1 TTTATTTTAA-ATTTCTTTATTCTTTTATTTATTTG
* * * * *
82653709 TTTATTTTCAATTTGTTTATTTTTTTGTTTATTTA
1 TTTATTTTAAATTTCTTTATTCTTTTATTTATTTG
*
82653744 CTTATTTT
1 TTTATTTT
82653752 TTATAATTGG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
35 32 0.89
36 4 0.11
ACGTcount: A:0.18, C:0.05, G:0.04, T:0.73
Consensus pattern (35 bp):
TTTATTTTAAATTTCTTTATTCTTTTATTTATTTG
Found at i:82653724 original size:15 final size:13
Alignment explanation
Indices: 82653697--82653810 Score: 62
Period size: 12 Copynumber: 8.9 Consensus size: 13
82653687 TCTTTATTCT
82653697 TTTA-TTTATTTG
1 TTTATTTTATTTG
82653709 TTTATTTTCAATTTG
1 TTTATTTT--ATTTG
82653724 TTTATTTT-TTTG
1 TTTATTTTATTTG
* *
82653736 TTTA-TTTACTTA
1 TTTATTTTATTTG
*
82653748 TTT-TTTATAATTG
1 TTTATTT-TATTTG
* *
82653761 GTTGTTTTA-TT-
1 TTTATTTTATTTG
*
82653772 TTTATTTTATTTC
1 TTTATTTTATTTG
* *
82653785 TTT-TATTATTTA
1 TTTATTTTATTTG
82653797 TCTTATTTTTATTT
1 T-TTA-TTTTATTT
82653811 ATTATTTTTT
Statistics
Matches: 80, Mismatches: 10, Indels: 21
0.72 0.09 0.19
Matches are distributed among these distances:
11 10 0.12
12 31 0.39
13 16 0.20
14 3 0.04
15 20 0.25
ACGTcount: A:0.18, C:0.04, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTATTTTATTTG
Found at i:82653754 original size:27 final size:27
Alignment explanation
Indices: 82653690--82653813 Score: 89
Period size: 27 Copynumber: 4.6 Consensus size: 27
82653680 TAATATTTCT
*
82653690 TTATTCTTTTATTTATTTGTTTATTTTC
1 TTATT-TTTTATTTATTTGTTTATTTAC
* *
82653718 -AATTTGTTTATTTTTTTGTTTATTTAC
1 TTATTT-TTTATTTATTTGTTTATTTAC
* *
82653745 TTATTTTTTA-TAATTGGTTGT-TTTA-
1 TTATTTTTTATTTATTTGTT-TATTTAC
* *
82653770 TTTTTATTTTATTTCTTT-TATTATTTATC
1 TTATT-TTTTATTTATTTGT-TTATTTA-C
82653799 TTA-TTTTTATTTATT
1 TTATTTTTTATTTATT
82653814 ATTTTTTGCT
Statistics
Matches: 74, Mismatches: 13, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
25 4 0.05
26 18 0.24
27 45 0.61
28 5 0.07
29 2 0.03
ACGTcount: A:0.18, C:0.04, G:0.05, T:0.73
Consensus pattern (27 bp):
TTATTTTTTATTTATTTGTTTATTTAC
Found at i:82653814 original size:22 final size:21
Alignment explanation
Indices: 82653765--82653817 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
82653755 TAATTGGTTG
*
82653765 TTTTATT-TTTATTTTATTTC
1 TTTTATTATTTATCTTATTTC
*
82653785 TTTTATTATTTATCTTATTTT
1 TTTTATTATTTATCTTATTTC
82653806 TATTTATTATTT
1 T-TTTATTATTT
82653818 TTTGCTCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
22 10 0.34
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTATTATTTATCTTATTTC
Found at i:82658520 original size:7 final size:7
Alignment explanation
Indices: 82658508--82658532 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
82658498 CGAGTCTTTC
82658508 TTTTCTT
1 TTTTCTT
82658515 TTTTCTT
1 TTTTCTT
82658522 TTTTCTT
1 TTTTCTT
82658529 TTTT
1 TTTT
82658533 ATATATTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTCTT
Found at i:82659378 original size:30 final size:28
Alignment explanation
Indices: 82659314--82659378 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 28
82659304 TACCACATTG
*
82659314 GACATTTTCAAAGTACATTTACAATATT
1 GACATTTTAAAAGTACATTTACAATATT
*
82659342 GAACATTTATAAAAGTATATTTACTAA-ATGT
1 G-ACATTT-TAAAAGTACATTTAC-AATAT-T
82659373 GACATT
1 GACATT
82659379 ATCTCGATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
29 6 0.19
30 20 0.65
31 4 0.13
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (28 bp):
GACATTTTAAAAGTACATTTACAATATT
Found at i:82672539 original size:28 final size:27
Alignment explanation
Indices: 82672473--82672542 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
82672463 ATAGTGAGTC
*
82672473 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
82672500 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
82672528 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82672543 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:82676485 original size:28 final size:27
Alignment explanation
Indices: 82676419--82676488 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
82676409 ATAGTGAGTC
*
82676419 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
82676446 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
82676474 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82676489 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:82684409 original size:27 final size:27
Alignment explanation
Indices: 82684387--82684460 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
82684377 GCATATAGTG
*
82684387 AGTCCGCACACTTAGTGCTATATAATC
1 AGTCCGCACACTTAGTGCTATATAATA
* *
82684414 AG-CTCGGACACATAGTGCTATATAATCA
1 AGTC-CGCACACTTAGTGCTATATAAT-A
* *
82684442 AATTCGCACACTTAGTGCT
1 AGTCCGCACACTTAGTGCT
82684461 GTACAAATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.03
27 22 0.59
28 14 0.38
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (27 bp):
AGTCCGCACACTTAGTGCTATATAATA
Found at i:82688545 original size:24 final size:24
Alignment explanation
Indices: 82688495--82688546 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
82688485 TTCGTAGGTC
* **
82688495 AAATAAATTATGCTAATAAATGTT
1 AAATAAATTATACTAATAAATACT
*
82688519 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
82688543 AAAT
1 AAAT
82688547 CTTCTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:82693623 original size:40 final size:40
Alignment explanation
Indices: 82693496--82693625 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
82693486 ATGCTGGAAA
* *
82693496 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
82693536 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
82693576 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
82693616 TTATATCCGG
1 TTATATCCGG
82693626 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:82699012 original size:21 final size:22
Alignment explanation
Indices: 82698968--82699018 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
82698958 TTACCTGCAT
82698968 TTAAACACATTAAATTGAACTTA
1 TTAAACACATTAAA-TGAACTTA
* *
82698991 TTAAACACATTTAA-GCACTTA
1 TTAAACACATTAAATGAACTTA
*
82699012 TTGAACA
1 TTAAACA
82699019 TGCACTCACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 12 0.48
23 13 0.52
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.33
Consensus pattern (22 bp):
TTAAACACATTAAATGAACTTA
Found at i:82702779 original size:47 final size:45
Alignment explanation
Indices: 82702660--82702829 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
82702650 TGGATATTTG
* *
82702660 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGAATGA
* *
82702705 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACT-A
1 G-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--GATG-AA-TGA
* * *
82702753 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGAATGA
* * * *
82702797 CGAACCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
82702830 GCTTATGGGC
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
44 31 0.29
45 3 0.03
46 34 0.32
47 33 0.31
48 4 0.04
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (45 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGAATGA
Found at i:82702821 original size:44 final size:43
Alignment explanation
Indices: 82702665--82702837 Score: 177
Period size: 44 Copynumber: 3.8 Consensus size: 43
82702655 ATTTGGGCAT
*
82702665 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAAC
* * * * *
82702709 GTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGGCAT
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GGAAC
*
82702758 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAAC
* *
82702802 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82702838 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 38 0.36
45 2 0.02
46 31 0.29
47 30 0.28
48 2 0.02
49 2 0.02
50 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (43 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC
Found at i:82705782 original size:15 final size:15
Alignment explanation
Indices: 82705743--82705821 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
82705733 GTATCTTGGG
*
82705743 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
82705758 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
82705773 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
82705787 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
82705802 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
82705816 TTTCTT
1 TTTCTT
82705822 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:82705806 original size:29 final size:29
Alignment explanation
Indices: 82705734--82705820 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
82705724 CATAGTATCG
* * * *
82705734 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
82705764 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
82705793 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
82705821 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:82708236 original size:42 final size:42
Alignment explanation
Indices: 82708189--82708358 Score: 189
Period size: 44 Copynumber: 3.9 Consensus size: 42
82708179 TATTTGGGCA
82708189 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG
* * * *
82708231 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T--GCG
*
82708278 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG
* * *
82708320 AACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82708359 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 31 0.29
43 3 0.03
44 37 0.34
45 2 0.02
46 3 0.03
47 30 0.28
48 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.29
Consensus pattern (42 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG
Found at i:82708255 original size:20 final size:20
Alignment explanation
Indices: 82708189--82708255 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
82708179 TATTTGGGCA
82708189 TCCGAACTCGTTGAGTTGAG
1 TCCGAACTCGTTGAGTTGAG
** * * *
82708209 TCCGAGTTCACTT-ATGGATGCG
1 TCCGAACTC-GTTGA--GTTGAG
82708231 TCCGAACTCGTTGAGTTGAG
1 TCCGAACTCGTTGAGTTGAG
82708251 TCCGA
1 TCCGA
82708256 GTTCGTGAGA
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
20 17 0.52
21 4 0.12
22 12 0.36
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.30
Consensus pattern (20 bp):
TCCGAACTCGTTGAGTTGAG
Found at i:82710363 original size:11 final size:11
Alignment explanation
Indices: 82710347--82710402 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
82710337 GTGGATCAGC
82710347 TCTTTTGAGCT
1 TCTTTTGAGCT
*
82710358 TCTTTTTAGCT
1 TCTTTTGAGCT
*
82710369 T-TTATGAGCT
1 TCTTTTGAGCT
* *
82710379 TCTGTTCAGC-
1 TCTTTTGAGCT
*
82710389 TCTTATGAGCT
1 TCTTTTGAGCT
82710400 TCT
1 TCT
82710403 GTTGGCGTGT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
10 15 0.44
11 19 0.56
ACGTcount: A:0.12, C:0.20, G:0.16, T:0.52
Consensus pattern (11 bp):
TCTTTTGAGCT
Found at i:82710376 original size:21 final size:21
Alignment explanation
Indices: 82710342--82710405 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
82710332 TTCGGGTGGA
*
82710342 TCAGCTCTTT-TGAGCTTCTTT
1 TCAGCT-TTTATGAGCTTCTGT
*
82710363 TTAGCTTTTATGAGCTTCTGT
1 TCAGCTTTTATGAGCTTCTGT
*
82710384 TCAGCTCTTATGAGCTTCTGT
1 TCAGCTTTTATGAGCTTCTGT
82710405 T
1 T
82710406 GGCGTGTTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
20 3 0.08
21 35 0.92
ACGTcount: A:0.12, C:0.20, G:0.17, T:0.50
Consensus pattern (21 bp):
TCAGCTTTTATGAGCTTCTGT
Found at i:82720148 original size:47 final size:47
Alignment explanation
Indices: 82720030--82720160 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
82720020 GTGCGATTGA
* * *
82720030 TACCTTGATTTGGCTATGGGCCATGGTATTGGTATTTCGGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGGAGA-GAGT
* ***
82720078 TACCTTGATTTTGCTACAAGCCATGGTATAGGTACTCCAGGAGA-AGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCC-GGAGAGAGT
*
82720125 TGCCTTGATTTGGCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
82720161 TATCGATTGA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
47 34 0.49
48 31 0.44
49 5 0.07
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGGAGAGAGT
Found at i:82720178 original size:47 final size:48
Alignment explanation
Indices: 82720028--82720179 Score: 118
Period size: 47 Copynumber: 3.2 Consensus size: 48
82720018 GGGTGCGATT
* **
82720028 GATACCTTGATTTGGCTATGGGCCATGGTATTGGTA-TT-TCGGAGAGGA
1 GATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTATC-GA-TTGA
* * *** * *
82720076 GTTACCTTGATTTTGCTACAAGCCATGGTATAGGTACTCCA-GGA--GAA
1 GATACCTTGATTTGGCTATGGGCCATGGTATAGGTACT-TATCGATTG-A
* *
82720123 GTTGCCTTGATTTGGCTATGGGCCATGGTATAGGTACTTATCGATTGA
1 GATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTATCGATTGA
82720171 GAT-CCTTGA
1 GATACCTTGA
82720180 CTATCCGACT
Statistics
Matches: 81, Mismatches: 16, Indels: 15
0.72 0.14 0.13
Matches are distributed among these distances:
46 2 0.02
47 42 0.52
48 33 0.41
49 4 0.05
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (48 bp):
GATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTATCGATTGA
Found at i:82726632 original size:40 final size:41
Alignment explanation
Indices: 82726587--82726696 Score: 127
Period size: 40 Copynumber: 2.7 Consensus size: 41
82726577 AAACAGGTTT
* *
82726587 TTAGCGGCG-TTTTAATAAAAAACGCTACT-AAAAACGAGCA
1 TTAGCGGCGCTTTT-ACAAAAAACGCCACTAAAAAACGAGCA
*
82726627 TTAGCGGCGCTTCTACAAAAAA-GCCACTAAAAAACGAGCA
1 TTAGCGGCGCTTTTACAAAAAACGCCACTAAAAAACGAGCA
* * * *
82726667 TCAGCTGCGCTTTTAGAAAAAACACCACTA
1 TTAGCGGCGCTTTTACAAAAAACGCCACTA
82726697 TAGGTTGACC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
39 5 0.08
40 45 0.76
41 9 0.15
ACGTcount: A:0.41, C:0.23, G:0.16, T:0.20
Consensus pattern (41 bp):
TTAGCGGCGCTTTTACAAAAAACGCCACTAAAAAACGAGCA
Found at i:82727249 original size:7 final size:7
Alignment explanation
Indices: 82727239--82727297 Score: 55
Period size: 7 Copynumber: 8.4 Consensus size: 7
82727229 AGTTTAAAAT
82727239 TTAGGGG
1 TTAGGGG
82727246 TTAGGGG
1 TTAGGGG
* **
82727253 TTAAGAA
1 TTAGGGG
82727260 TTAGGGG
1 TTAGGGG
82727267 TTAGGGG
1 TTAGGGG
* * *
82727274 ATAAGGA
1 TTAGGGG
82727281 TTAGGGG
1 TTAGGGG
*
82727288 TTAAGGG
1 TTAGGGG
82727295 TTA
1 TTA
82727298 AAGGTTAAGA
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.27, C:0.00, G:0.44, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:82727256 original size:21 final size:21
Alignment explanation
Indices: 82727239--82727298 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
82727229 AGTTTAAAAT
82727239 TTAGGGGTTAGGGGTTAAGAA
1 TTAGGGGTTAGGGGTTAAGAA
* *
82727260 TTAGGGGTTAGGGGATAAGGA
1 TTAGGGGTTAGGGGTTAAGAA
*
82727281 TTAGGGGTTAAGGGTTAA
1 TTAGGGGTTAGGGGTTAA
82727299 AGGTTAAGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.28, C:0.00, G:0.43, T:0.28
Consensus pattern (21 bp):
TTAGGGGTTAGGGGTTAAGAA
Found at i:82729775 original size:13 final size:14
Alignment explanation
Indices: 82729759--82729787 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82729749 TTATAAATAT
82729759 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
82729772 TTATAATGGTTTAA
1 TTATAATGGTTTAA
82729786 TT
1 TT
82729788 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:82730232 original size:21 final size:21
Alignment explanation
Indices: 82730198--82730264 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
82730188 TTAGAGCGGA
*
82730198 GGCAGCAGAGAGGGAGGTAGC
1 GGCAGTAGAGAGGGAGGTAGC
* * * *
82730219 GGCGGTAGCGAGGGAGGCAGT
1 GGCAGTAGAGAGGGAGGTAGC
* *
82730240 GGCAGTAGAGAAGGAGGTAGA
1 GGCAGTAGAGAGGGAGGTAGC
82730261 GGCA
1 GGCA
82730265 ACAGCTATGG
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.28, C:0.12, G:0.52, T:0.07
Consensus pattern (21 bp):
GGCAGTAGAGAGGGAGGTAGC
Found at i:82730562 original size:31 final size:31
Alignment explanation
Indices: 82730520--82730585 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
82730510 TGTATTTTTT
*
82730520 ATGCTAAATTTGCTGTTTTTGGTTGCATTTC
1 ATGCTAAATTTGCTGTTTTTGGTTGCATTTA
* *
82730551 ATGCTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGCTAAATTTGCTGTTTTTGGTTGCATTTA
82730582 ATGC
1 ATGC
82730586 AGGAAGGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.17, C:0.11, G:0.21, T:0.52
Consensus pattern (31 bp):
ATGCTAAATTTGCTGTTTTTGGTTGCATTTA
Found at i:82734163 original size:43 final size:41
Alignment explanation
Indices: 82734065--82734202 Score: 181
Period size: 41 Copynumber: 3.3 Consensus size: 41
82734055 ACATAAAATT
* **
82734065 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGCGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCATAAAGCC
82734106 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ATAAAGCC
*
82734149 TGCTAGGCAATAAGCCTGATATAATACACCGGCATAAAGCT
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCATAAAGCC
*
82734190 TGCTAGGAAATAA
1 TGCTAGGCAATAA
82734203 AGCCCGAATA
Statistics
Matches: 88, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
41 47 0.53
42 3 0.03
43 38 0.43
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCATAAAGCC
Found at i:82736564 original size:21 final size:21
Alignment explanation
Indices: 82736540--82736581 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
82736530 TTAGTAAGTA
82736540 TCAATTTAATTTCTAATCTAG
1 TCAATTTAATTTCTAATCTAG
82736561 TCAATTTAATTTCTAATCTAG
1 TCAATTTAATTTCTAATCTAG
82736582 CTAACATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.48
Consensus pattern (21 bp):
TCAATTTAATTTCTAATCTAG
Found at i:82738975 original size:27 final size:27
Alignment explanation
Indices: 82738936--82739089 Score: 114
Period size: 27 Copynumber: 5.7 Consensus size: 27
82738926 CTCAATTGTG
**
82738936 AAATTACTGAAATACCCCT-GTAGGATA
1 AAATTACCAAAATACCCCTAGTAGG-TA
* * **
82738963 GAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
* **
82738990 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
* * **
82739017 AAATTACCGAAATACCACTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
* * * **
82739044 AAATTATCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTAGGTA
82739071 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
82739090 GATTTACAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.03
27 99 0.91
28 7 0.06
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTAGGTA
Found at i:82739003 original size:54 final size:54
Alignment explanation
Indices: 82738931--82739114 Score: 160
Period size: 54 Copynumber: 3.4 Consensus size: 54
82738921 TTATCCTCAA
* * *
82738931 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACC-CTTAGT
1 TTGTAAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCAC-TAGT
* * ** *
82738985 TTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCACTAGT
1 TTGTAAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
* * ** *
82739039 TTGTAAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATACCACTAG-T
** *
82739093 TTACAAAATTACAGAAATACCC
1 TTGTAAAATTACCGAAATACCC
82739115 TTGACTTTTT
Statistics
Matches: 107, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.04
54 97 0.91
55 6 0.06
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:82739057 original size:81 final size:82
Alignment explanation
Indices: 82738972--82739180 Score: 226
Period size: 81 Copynumber: 2.5 Consensus size: 82
82738962 AGAATTACCA
*
82738972 AAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCGAAATACCAC-T
1 AAATACCCTTAGTTTGTAAAATTACCAAAATACCCTT-GTTTGTAAAATTACAGAAATACC-CTT
* *
82739036 -AGTTTGT-AAAATTATCG
64 GACTTTGTAAAAATTATAG
* * * **
82739053 AAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTG
1 AAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTG-TTTGTAAAATTACAGAAATACCCTTG
*
82739118 ACTTTTTAAAAATTATAG
65 ACTTTGTAAAAATTATAG
* * ** **
82739136 AAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTA
1 AAATACCCTTAGTTTGTAAAATTACCAAAATACCCTT-GTTTGTA
82739181 GATTTACCAA
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
80 2 0.02
81 54 0.52
82 5 0.05
83 41 0.40
84 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (82 bp):
AAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTGTTTGTAAAATTACAGAAATACCCTTGA
CTTTGTAAAAATTATAG
Found at i:82739094 original size:27 final size:27
Alignment explanation
Indices: 82738964--82739198 Score: 176
Period size: 27 Copynumber: 8.6 Consensus size: 27
82738954 TGTAGGATAG
*
82738964 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTGAGTTTGTAA
*
82738991 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTGAGTTTGTAA
*
82739018 AATTACCGAAATACCACT-AGTTTGTAA
1 AATTACCAAAATACC-CTGAGTTTGTAA
* * * *
82739045 AATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTGAGTTTGTAA
**
82739072 AATTACCAAAATACCCCTGA-TTTACAA
1 AATTACCAAAATA-CCCTGAGTTTGTAA
* *
82739099 AATTA-CAGAAATACCCTTGACTTTTTAAA
1 AATTACCA-AAATACCC-TGAGTTTGT-AA
* * **
82739128 AATTA-TAGAAATACCATTG-GTTTACAA
1 AATTACCA-AAATACC-CTGAGTTTGTAA
** *
82739155 AATTACTGAAATACCCTTG-GTTTGTAG
1 AATTACCAAAATACCC-TGAGTTTGTAA
* *
82739182 ATTTACCAAAACACCCT
1 AATTACCAAAATACCCT
82739199 TGTAGGATGA
Statistics
Matches: 174, Mismatches: 24, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
26 8 0.05
27 134 0.77
28 14 0.08
29 18 0.10
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTGAGTTTGTAA
Found at i:82739295 original size:27 final size:27
Alignment explanation
Indices: 82739233--82739295 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
82739223 CCCTAATAGC
*
82739233 TAAAAAGACCGTAAAACCCCTGTAGGG
1 TAAAATGACCGTAAAACCCCTGTAGGG
* * * * *
82739260 TAAAGTGACCGTAATACGCTTGTATGG
1 TAAAATGACCGTAAAACCCCTGTAGGG
82739287 TAAAATGAC
1 TAAAATGAC
82739296 GAATATGCCC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.22
Consensus pattern (27 bp):
TAAAATGACCGTAAAACCCCTGTAGGG
Found at i:82740174 original size:25 final size:25
Alignment explanation
Indices: 82740105--82740174 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
82740095 AGGAAGTGCT
* *
82740105 AAAAGGGCTCTGCCCCAATTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
82740130 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
82740155 GAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
82740175 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:82740187 original size:24 final size:23
Alignment explanation
Indices: 82740105--82740201 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
82740095 AGGAAGTGCT
* * *
82740105 AAAAGGGCTCTGCCCCAATTTACC
1 AAAAGGGCTTTGCCCC-AGTTATC
*
82740129 AAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
*
82740154 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
82740178 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
82740202 ATGATAAAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
23 4 0.07
24 14 0.23
25 42 0.70
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:82740381 original size:42 final size:42
Alignment explanation
Indices: 82740322--82740413 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
82740312 TAGTCTCCCC
*
82740322 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
82740364 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
82740406 AAATGGGC
1 AAATGGGC
82740414 CTAAGGGCTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:82740473 original size:31 final size:31
Alignment explanation
Indices: 82740437--82740582 Score: 215
Period size: 31 Copynumber: 4.7 Consensus size: 31
82740427 TGTTTACAGT
*
82740437 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
** *
82740468 AAAGGCTTTAGCCCAGTGATATGCTTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
82740499 AAAGGCTTCGGCCCAGTGCTATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
82740530 AAAGGCTTTC-GCCCAGTGATATGATTTATGG
1 AAAGGC-TTCGGCCCAGTGATATGATTTATGA
82740561 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
82740583 TCAAGACTAA
Statistics
Matches: 103, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
30 8 0.08
31 92 0.89
32 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:82740534 original size:62 final size:62
Alignment explanation
Indices: 82740437--82740582 Score: 240
Period size: 62 Copynumber: 2.4 Consensus size: 62
82740427 TGTTTACAGT
* *
82740437 AAAGGCTTCGGCCTAGTGATATGATTTATGAAAAGGCTTTAGCCCAGTGATATGCTTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTTAGCCCAGTGATATGATTTATGA
* * *
82740499 AAAGGCTTCGGCCCAGTGCTATGATTTATGAAAAGGCTTTCGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTTAGCCCAGTGATATGATTTATGA
82740561 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
82740583 TCAAGACTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
61 4 0.05
62 74 0.95
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (62 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTTAGCCCAGTGATATGATTTATGA
Found at i:82740797 original size:31 final size:31
Alignment explanation
Indices: 82740759--82740904 Score: 240
Period size: 31 Copynumber: 4.7 Consensus size: 31
82740749 TGTTTACAGT
82740759 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
82740790 AAAGGCTTCAGCCCAGTGATATGCTTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
82740821 AAAGGCTTCGGCCCAGTGCTATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
82740852 AAAGGCTTTGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
82740883 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
82740905 TCAAGACTAA
Statistics
Matches: 106, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.05
31 101 0.95
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:82740980 original size:322 final size:322
Alignment explanation
Indices: 82740395--82741041 Score: 1240
Period size: 322 Copynumber: 2.0 Consensus size: 322
82740385 TTGACATTAC
*
82740395 ATGTGATATTGAAATGGGCCTAAGGGCTATACTGTTTACAGTAAAGGCTTCGGCCTAGTGATATG
1 ATGTGATATTGAAATGGGCCTAAGGGCTATACTGTTTACAGTAAAGGCTTCGGCCCAGTGATATG
*
82740460 ATTTATGAAAAGGCTTTAGCCCAGTGATATGCTTTATGAAAAGGCTTCGGCCCAGTGCTATGATT
66 ATTTATGAAAAGGCTTCAGCCCAGTGATATGCTTTATGAAAAGGCTTCGGCCCAGTGCTATGATT
82740525 TATGAAAAGGCTTTCGCCCAGTGATATGATTTATGGAAAGGCTTCGGCCCAGTATATGTCAAGAC
131 TATGAAAAGGCTTTCGCCCAGTGATATGATTTATGGAAAGGCTTCGGCCCAGTATATGTCAAGAC
82740590 TAAATAAGGCTTTGGCCCAGATTGTACTAATACCGTGTTATTTACTATTTGTTTGTTATTAGGGT
196 TAAATAAGGCTTTGGCCCAGATTGTACTAATACCGTGTTATTTACTATTTGTTTGTTATTAGGGT
*
82740655 TACACACTGAGTTTTCGTAAACTCACCCTGTTTCTAACTGTGCAGGTAATCCCTAAGCTTAG
261 TACACACTGAGTTTTCGTAAACTCACCCCGTTTCTAACTGTGCAGGTAATCCCTAAGCTTAG
82740717 ATGTGATATTGAAATGGGCCTAAGGGCTATACTGTTTACAGTAAAGGCTTCGGCCCAGTGATATG
1 ATGTGATATTGAAATGGGCCTAAGGGCTATACTGTTTACAGTAAAGGCTTCGGCCCAGTGATATG
82740782 ATTTATGAAAAGGCTTCAGCCCAGTGATATGCTTTATGAAAAGGCTTCGGCCCAGTGCTATGATT
66 ATTTATGAAAAGGCTTCAGCCCAGTGATATGCTTTATGAAAAGGCTTCGGCCCAGTGCTATGATT
*
82740847 TATGAAAAGGCTTTGGCCCAGTGATATGATTTATGGAAAGGCTTCGGCCCAGTATATGTCAAGAC
131 TATGAAAAGGCTTTCGCCCAGTGATATGATTTATGGAAAGGCTTCGGCCCAGTATATGTCAAGAC
* *
82740912 TAAATAAGGCTTTGGCCCAGATTGTACTGATACCGTGTTATTTACTATTTGTTTGTTATTGGGGT
196 TAAATAAGGCTTTGGCCCAGATTGTACTAATACCGTGTTATTTACTATTTGTTTGTTATTAGGGT
82740977 TACACACTGAGTTTTCGTAAACTCACCCCGTTTCTAACTGTGCAGGTAATCCCTAAGCTTAG
261 TACACACTGAGTTTTCGTAAACTCACCCCGTTTCTAACTGTGCAGGTAATCCCTAAGCTTAG
82741039 ATG
1 ATG
82741042 GTTTGGAGCT
Statistics
Matches: 319, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
322 319 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (322 bp):
ATGTGATATTGAAATGGGCCTAAGGGCTATACTGTTTACAGTAAAGGCTTCGGCCCAGTGATATG
ATTTATGAAAAGGCTTCAGCCCAGTGATATGCTTTATGAAAAGGCTTCGGCCCAGTGCTATGATT
TATGAAAAGGCTTTCGCCCAGTGATATGATTTATGGAAAGGCTTCGGCCCAGTATATGTCAAGAC
TAAATAAGGCTTTGGCCCAGATTGTACTAATACCGTGTTATTTACTATTTGTTTGTTATTAGGGT
TACACACTGAGTTTTCGTAAACTCACCCCGTTTCTAACTGTGCAGGTAATCCCTAAGCTTAG
Found at i:82743510 original size:41 final size:42
Alignment explanation
Indices: 82743453--82743554 Score: 147
Period size: 41 Copynumber: 2.5 Consensus size: 42
82743443 ACATAAAATT
*
82743453 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGGCACAGAGCC
1 TGCTAGGCAATAAAGCCTGA-TATAATACACCGGCACAAAGCC
*
82743494 TGCTAGGCAAT-AAGCCTGATATAATACACCGGCTCAAAGCC
1 TGCTAGGCAATAAAGCCTGATATAATACACCGGCACAAAGCC
*
82743535 TGCTAGCCAATAAAGCCTGA
1 TGCTAGGCAATAAAGCCTGA
82743555 ATATCACTGA
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
41 44 0.80
42 11 0.20
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (42 bp):
TGCTAGGCAATAAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:82746459 original size:42 final size:42
Alignment explanation
Indices: 82746396--82746560 Score: 206
Period size: 42 Copynumber: 3.9 Consensus size: 42
82746386 ATATTCGACA
***
82746396 ATAGCTTCGGCTATACATTGGCACTTAATGTGCGAGATTGAG
1 ATAGCTTCGGCTACGTATTGGCACTTAATGTGCGAGATTGAG
* *
82746438 ATAGCTTCGGCTACGTTTTGGCACTTAATGTGCGAGATCGAG
1 ATAGCTTCGGCTACGTATTGGCACTTAATGTGCGAGATTGAG
* * * *
82746480 ATAGCTTCGGCTATGCATTGGCACTTAGTGTGC-ATAATTGAG
1 ATAGCTTCGGCTACGTATTGGCACTTAATGTGCGA-GATTGAG
* * *
82746522 ATAGATTCGGTTACGTATTGGCACTTAGTGTGCGAGATT
1 ATAGCTTCGGCTACGTATTGGCACTTAATGTGCGAGATT
82746561 TCTGAGTAAC
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 103 0.98
43 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
ATAGCTTCGGCTACGTATTGGCACTTAATGTGCGAGATTGAG
Found at i:82746500 original size:84 final size:84
Alignment explanation
Indices: 82746396--82746559 Score: 249
Period size: 84 Copynumber: 2.0 Consensus size: 84
82746386 ATATTCGACA
* * *
82746396 ATAGCTTCGGCTATACATTGGCACTTAATGTGCGA-GATTGAGATAGCTTCGGCTACGTTTTGGC
1 ATAGCTTCGGCTATACATTGGCACTTAATGTGC-ATAATTGAGATAGATTCGGCTACGTATTGGC
82746460 ACTTAATGTGCGAGATCGAG
65 ACTTAATGTGCGAGATCGAG
* * *
82746480 ATAGCTTCGGCTATGCATTGGCACTTAGTGTGCATAATTGAGATAGATTCGGTTACGTATTGGCA
1 ATAGCTTCGGCTATACATTGGCACTTAATGTGCATAATTGAGATAGATTCGGCTACGTATTGGCA
*
82746545 CTTAGTGTGCGAGAT
66 CTTAATGTGCGAGAT
82746560 TTCTGAGTAA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
83 1 0.01
84 71 0.99
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (84 bp):
ATAGCTTCGGCTATACATTGGCACTTAATGTGCATAATTGAGATAGATTCGGCTACGTATTGGCA
CTTAATGTGCGAGATCGAG
Found at i:82748096 original size:40 final size:40
Alignment explanation
Indices: 82747988--82748157 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
82747978 CGGGATTTAA
* * * * *
82747988 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
82748028 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82748068 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82748108 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
82748148 CCGGATATAT
1 CCGGATATAT
82748158 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:82752498 original size:48 final size:48
Alignment explanation
Indices: 82752431--82752708 Score: 260
Period size: 48 Copynumber: 5.8 Consensus size: 48
82752421 TCAGTACATG
** * * *
82752431 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGA
1 TGAGATCCTGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA
* * * *
82752479 TGAGATCCTGTATAAGACCATGTCTGGGACATGGCATCGGCGTTGATA
1 TGAGATCCTGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA
* * *
82752527 TGTG-TGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-C-ATTA
1 TGAGATCCT-GTGTAAGACCATGTCTGGGACATGGCATC-GACATCGA-TA
* * * **
82752575 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGACG
1 TGAGATCCTGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA
* ** *
82752623 TGTA-AGCCAATGTAAGACCATGTCAGGGACATGGCATCGACATCGATA
1 TG-AGATCCTGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA
** *
82752671 TGTTAT-TTCGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGATCCT-GTGTAAGACCATGTCTGGGACATGGCATC
82752709 ATTATGAGAT
Statistics
Matches: 189, Mismatches: 32, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
47 6 0.03
48 178 0.94
49 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (48 bp):
TGAGATCCTGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA
Found at i:82752552 original size:96 final size:96
Alignment explanation
Indices: 82752440--82752708 Score: 301
Period size: 96 Copynumber: 2.8 Consensus size: 96
82752430 GTGAGATCCC
* * * *
82752440 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCCTGTATAAGACCATGTCTG
1 ATGTAAGACCATGTCTGGGACATGGCATAGACATCGATATGAGATCCTGTGTAAGACCATGTCTG
* * * * ** *
82752505 GGACATGGCATCGGCGTTGATATGTGTGCTA
66 GGACATGGCATCGACCTCGACATGTAAGCCA
* * * *
82752536 GTGTAAGACCATGTCTGGGACATGGCATCAGCCA-C-ATTATGAGAGCCAGTGTAAGACCATGTC
1 ATGTAAGACCATGTCTGGGACATGGCAT-AGACATCGA-TATGAGATCCTGTGTAAGACCATGTC
*
82752599 TGGGACATGGCATCGACCTCGACGTGTAAGCCA
64 TGGGACATGGCATCGACCTCGACATGTAAGCCA
* * ** *
82752632 ATGTAAGACCATGTCAGGGACATGGCATCGACATCGATATGTTAT-TTCGTGTAAGACCATGTCT
1 ATGTAAGACCATGTCTGGGACATGGCATAGACATCGATATGAGATCCT-GTGTAAGACCATGTCT
82752696 GGGACATGGCATC
65 GGGACATGGCATC
82752709 ATTATGAGAT
Statistics
Matches: 144, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
95 4 0.03
96 136 0.94
97 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (96 bp):
ATGTAAGACCATGTCTGGGACATGGCATAGACATCGATATGAGATCCTGTGTAAGACCATGTCTG
GGACATGGCATCGACCTCGACATGTAAGCCA
Found at i:82752691 original size:144 final size:144
Alignment explanation
Indices: 82752441--82752709 Score: 364
Period size: 144 Copynumber: 1.9 Consensus size: 144
82752431 TGAGATCCCA
* * * ** *
82752441 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGATCCTGTATAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGAGAGCCAATATAAGACCATGTCAGG
* * *
82752506 GACATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC
66 GACATGGCATCGACATCGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC
82752571 ATTATGAGAGCCAG
131 ATTATGAGAGCCAG
* *
82752585 TGTAAGACCATGTCTGGGACATGGCATCGACCTCGACG-TGTA-AGCCAATGTAAGACCATGTCA
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGA-GATG-AGAGCCAATATAAGACCATGTCA
** *
82752648 GGGACATGGCATCGACATCGATATGT-TATTTCGTGTAAGACCATGTCTGGGACATGGCATCA
64 GGGACATGGCATCGACATCGATATGTGT-GCTAGTGTAAGACCATGTCTGGGACATGGCATCA
82752710 TTATGAGATA
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
143 1 0.01
144 105 0.97
145 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGAGAGCCAATATAAGACCATGTCAGG
GACATGGCATCGACATCGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC
ATTATGAGAGCCAG
Found at i:82756893 original size:42 final size:42
Alignment explanation
Indices: 82756828--82756991 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
82756818 TATTCGACGC
* * * * *
82756828 TAGCTTCAGCTATGCATTAGCACTTAATTTGCAAGATTGAGA
1 TAGCTTCGGCTACGTATTGGCACTTAATGTGCAAGATTGAGA
* * *
82756870 TAGCTTCGGCTACGTTTTGGCACTTAATGTGCGAGATCGAGA
1 TAGCTTCGGCTACGTATTGGCACTTAATGTGCAAGATTGAGA
* * *
82756912 TAGCTTCGGCTATGCATTGGCACTTAGTGTGCATA-ATTGAGA
1 TAGCTTCGGCTACGTATTGGCACTTAATGTGCA-AGATTGAGA
* * * *
82756954 TAGATTCGGTTACGTATTGGCACTTAGTGTGCGAGATT
1 TAGCTTCGGCTACGTATTGGCACTTAATGTGCAAGATT
82756992 TCTGAGTAAC
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
41 1 0.01
42 99 0.98
43 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (42 bp):
TAGCTTCGGCTACGTATTGGCACTTAATGTGCAAGATTGAGA
Found at i:82756974 original size:84 final size:84
Alignment explanation
Indices: 82756828--82756990 Score: 238
Period size: 84 Copynumber: 1.9 Consensus size: 84
82756818 TATTCGACGC
* * *
82756828 TAGCTTCAGCTATGCATTAGCACTTAATTTGCAAGATTGAGATAGCTTCGGCTACGTTTTGGCAC
1 TAGCTTCAGCTATGCATTAGCACTTAATGTGCAAGATTGAGATAGATTCGGCTACGTATTGGCAC
82756893 TTAATGTGCGAGATCGAGA
66 TTAATGTGCGAGATCGAGA
* * * *
82756912 TAGCTTCGGCTATGCATTGGCACTTAGTGTGCATA-ATTGAGATAGATTCGGTTACGTATTGGCA
1 TAGCTTCAGCTATGCATTAGCACTTAATGTGCA-AGATTGAGATAGATTCGGCTACGTATTGGCA
*
82756976 CTTAGTGTGCGAGAT
65 CTTAATGTGCGAGAT
82756991 TTCTGAGTAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
84 69 0.99
85 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (84 bp):
TAGCTTCAGCTATGCATTAGCACTTAATGTGCAAGATTGAGATAGATTCGGCTACGTATTGGCAC
TTAATGTGCGAGATCGAGA
Found at i:82757092 original size:32 final size:32
Alignment explanation
Indices: 82757056--82757122 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
82757046 TGAGTATGAG
*
82757056 ATTGGTATGAGATGGTACAGGTATGTACGGAA
1 ATTGGTATGAGATGGTACAGGTATGTACGAAA
*
82757088 ATTGGTATGAGATGGTATAGGTATGTACGAAA
1 ATTGGTATGAGATGGTACAGGTATGTACGAAA
82757120 ATT
1 ATT
82757123 CAATTGAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.31
Consensus pattern (32 bp):
ATTGGTATGAGATGGTACAGGTATGTACGAAA
Found at i:82760316 original size:29 final size:29
Alignment explanation
Indices: 82760277--82760355 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
82760267 CTTAATAATC
*
82760277 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
82760307 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
82760336 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
82760356 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:82764088 original size:41 final size:41
Alignment explanation
Indices: 82763942--82764091 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
82763932 CGCTGACTGA
* *
82763942 AAAAGCCCTTCGAGACCAAGCTCGAATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
* * * * * * *
82763983 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
82764023 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
82764064 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
82764092 TAAACCCCGA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 32 0.35
41 60 0.65
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
Found at i:82767757 original size:17 final size:17
Alignment explanation
Indices: 82767735--82767772 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
82767725 TATTCTCGGA
82767735 GGCTTCCAGTTAAGTAT
1 GGCTTCCAGTTAAGTAT
82767752 GGCTTCCAGTTAAGTAT
1 GGCTTCCAGTTAAGTAT
82767769 GGCT
1 GGCT
82767773 GAAATTTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.34
Consensus pattern (17 bp):
GGCTTCCAGTTAAGTAT
Found at i:82772085 original size:41 final size:41
Alignment explanation
Indices: 82772032--82772140 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 41
82772022 TGCTGACTGA
*
82772032 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
* * * * * * * *
82772073 GAAGGCCCTTCGAAACTAGGTTCAG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
82772113 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
82772141 TAAACCCCGA
Statistics
Matches: 51, Mismatches: 16, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
40 31 0.61
41 20 0.39
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
Found at i:82776425 original size:6 final size:6
Alignment explanation
Indices: 82776414--82776600 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
82776404 AACCAAAATG
*
82776414 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
82776462 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATT AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
82776511 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
82776559 AGAATC AGAATC AAAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
82776601 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 123 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:82776427 original size:30 final size:30
Alignment explanation
Indices: 82776393--82776600 Score: 225
Period size: 30 Copynumber: 7.1 Consensus size: 30
82776383 AAGAAACATT
* *
82776393 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
82776423 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
82776453 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
* *
82776483 ATCAGAATTAGGTGACAGAATTAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
82776514 ATCAG---T---AACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* *
82776538 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* *
82776568 ATCAAAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
82776599 AT
1 AT
82776601 GTGAATGCAA
Statistics
Matches: 153, Mismatches: 14, Indels: 21
0.81 0.07 0.11
Matches are distributed among these distances:
24 21 0.14
27 1 0.01
28 1 0.01
29 1 0.01
30 85 0.56
31 44 0.29
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:82776514 original size:85 final size:85
Alignment explanation
Indices: 82776414--82776600 Score: 347
Period size: 85 Copynumber: 2.2 Consensus size: 85
82776404 AACCAAAATG
82776414 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
82776479 CAGAATCAGAATTAGGTGAC
66 CAGAATCAAAATTAGGTGAC
* *
82776499 AGAATTAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
82776564 CAGAATCAAAATTAGGTGAC
66 CAGAATCAAAATTAGGTGAC
82776584 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
82776601 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 98 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAAAATTAGGTGAC
Found at i:82776755 original size:27 final size:26
Alignment explanation
Indices: 82776718--82776799 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
82776708 AGCATGGCTG
*
82776718 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
82776744 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
82776771 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
82776798 CC
1 CC
82776800 TAACAGAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 6 0.12
27 44 0.88
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:82777004 original size:22 final size:22
Alignment explanation
Indices: 82776956--82777014 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
82776946 GTAAATACGT
*
82776956 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
82776978 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
82777000 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
82777015 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:82777141 original size:27 final size:26
Alignment explanation
Indices: 82777102--82777184 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
82777092 TCGATCGGTC
* *
82777102 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
82777128 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
82777155 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
82777182 AAC
1 AAC
82777185 GCTTCCTCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:82777431 original size:27 final size:27
Alignment explanation
Indices: 82777382--82777496 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 27
82777372 GGGGCAAAAT
* * ** *
82777382 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82777409 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
82777436 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82777463 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
82777490 GGTAATT
1 GGTAATT
82777497 TCACAATCAA
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:82777448 original size:54 final size:53
Alignment explanation
Indices: 82777386--82777488 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 53
82777376 CAAAATGGTA
* *
82777386 ATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCAGT
1 ATTTTACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGT
* * *
82777439 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 ATTT-TACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTT
82777489 TGGTAATTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (53 bp):
ATTTTACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGT
Found at i:82777531 original size:27 final size:27
Alignment explanation
Indices: 82777501--82777908 Score: 450
Period size: 27 Copynumber: 15.2 Consensus size: 27
82777491 GTAATTTCAC
* *
82777501 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
82777528 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
* * *
82777555 AATTGTGGGTAAACCAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * **
82777582 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
**
82777609 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
82777636 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
82777663 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* **
82777690 AATTGA-GGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
82777716 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * **
82777743 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
82777770 AATCGAGGGTAAAAC-GTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * *
82777796 AATTGAGGATAAAATAGTAATTCTGT-
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
82777822 AACCTGAGGGTAAAACAGTAATTTTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
** * **
82777850 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
82777877 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
82777904 AATCG
1 AATCG
82777909 GGAGTACTTT
Statistics
Matches: 318, Mismatches: 53, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
26 46 0.14
27 267 0.84
28 5 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:82777763 original size:107 final size:106
Alignment explanation
Indices: 82777506--82777906 Score: 504
Period size: 107 Copynumber: 3.7 Consensus size: 106
82777496 TTCACAATCA
* * * * * *
82777506 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAATTGTGGGTAAACCA
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTT-AAAATCGAGGGTAAAACA
* ** * *
82777571 GTAATTCTGTAAATCAAGGGTAAAACAGTAATT-T-TACAAATCG
65 GTAATTCTATAAATTGA-GGTAAAATAGTAATTCTGTA-AACT-G
** * *
82777614 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAAC
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-T-TAAAATCGAGGGTAAAAC
*
82777678 AGTAATTCTATAAATTGAGGTAAAATGGTAATTCTGTAAACTG
64 AGTAATTCTATAAATTGAGGTAAAATAGTAATTCTGTAAACTG
82777721 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAAC-
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTA-AAATCGAGGGTAAAACA
*
82777785 GTAATTCTATAAATTGAGGATAAAATAGTAATTCTGTAACCTG
65 GTAATTCTATAAATTGAGG-TAAAATAGTAATTCTGTAAACTG
* * *
82777828 AGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTAAAACG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTT-AAAATCGAGGGTAAAACA
*
82777893 GTAATTCTGTAAAT
65 GTAATTCTATAAAT
82777907 CGGGAGTACT
Statistics
Matches: 262, Mismatches: 22, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
105 2 0.01
106 23 0.09
107 147 0.56
108 83 0.32
109 6 0.02
110 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (106 bp):
AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAATCGAGGGTAAAACAG
TAATTCTATAAATTGAGGTAAAATAGTAATTCTGTAAACTG
Found at i:82779961 original size:40 final size:40
Alignment explanation
Indices: 82779917--82780042 Score: 157
Period size: 40 Copynumber: 3.1 Consensus size: 40
82779907 TGGAAATTAT
* *
82779917 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGCTAC
* *
82779957 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG-TTC
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGCTAC
** *
82779996 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGCGTGGCTAT
1 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGCTAC
82780037 ATCCGG
1 ATCCGG
82780043 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
39 5 0.07
40 68 0.92
41 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.21
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGCTAC
Found at i:82785834 original size:6 final size:6
Alignment explanation
Indices: 82785823--82785983 Score: 165
Period size: 6 Copynumber: 26.8 Consensus size: 6
82785813 AACCAAAATG
*
82785823 AGAATC AGAATC A-AATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
82785870 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
82785919 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
82785967 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
82785984 TAGGTGACAC
Statistics
Matches: 131, Mismatches: 10, Indels: 28
0.78 0.06 0.17
Matches are distributed among these distances:
5 15 0.11
6 106 0.81
7 8 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:82785935 original size:85 final size:85
Alignment explanation
Indices: 82785823--82786008 Score: 347
Period size: 85 Copynumber: 2.2 Consensus size: 85
82785813 AACCAAAATG
82785823 AGAATCAGAATCA-AATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
82785887 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
*
82785907 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
82785972 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTAGGTGAC
*
82785992 ACAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
82786009 GTAAATGCAA
Statistics
Matches: 99, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
84 13 0.13
85 86 0.87
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTAGGTGAC
Found at i:82785974 original size:24 final size:24
Alignment explanation
Indices: 82785836--82786008 Score: 110
Period size: 24 Copynumber: 7.1 Consensus size: 24
82785826 ATCAGAATCA
82785836 AATCAGTAACAGAATCAGAATCAG
1 AATCAGTAACAGAATCAGAATCAG
* **
82785860 AATCAATATTAGTAA-CAGAATCAG
1 AATCAGTAACAG-AATCAGAATCAG
* *
82785884 AATCAG-AATCAGAATTAG-GTGACAG
1 AATCAGTAA-CAGAATCAGAAT--CAG
82785909 AATCAG-AATCAGAATCAGTAA-CAG
1 AATCAGTAA-CAGAATCAG-AATCAG
* *
82785933 AATCAG-AATCAGAATCAGTATTAG
1 AATCAGTAA-CAGAATCAGAATCAG
82785957 TAA-CAG-AATCAGAATCAGAATCAG
1 -AATCAGTAA-CAGAATCAGAATCAG
* * *
82785981 AATTAGGTGACACAATCAGAATCAG
1 AATCA-GTAACAGAATCAGAATCAG
82786006 AAT
1 AAT
82786009 GTAAATGCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 23
0.75 0.11 0.14
Matches are distributed among these distances:
23 7 0.06
24 70 0.58
25 42 0.35
26 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (24 bp):
AATCAGTAACAGAATCAGAATCAG
Found at i:82786196 original size:27 final size:27
Alignment explanation
Indices: 82786126--82786207 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
82786116 AGCATGGCTG
* *
82786126 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
82786152 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
*
82786179 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATAATGTGGCAGAGCCA
82786206 CC
1 CC
82786208 TAACAGAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 39 0.83
28 3 0.06
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:82786397 original size:22 final size:22
Alignment explanation
Indices: 82786365--82786422 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
82786355 TAAATACGTT
*
82786365 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
82786387 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
82786409 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
82786423 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:82786554 original size:27 final size:26
Alignment explanation
Indices: 82786513--82786592 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 26
82786503 ATCGGTCAAT
* *
82786513 AGATATTGTGACAGAGTCACCAGATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
82786540 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
*
82786566 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
82786593 TCTTCCTCCG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 7 0.14
27 42 0.86
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:82786820 original size:27 final size:27
Alignment explanation
Indices: 82786790--82786905 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
82786780 GGGGCAAAAT
* * *
82786790 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
82786817 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
82786844 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
82786871 GATAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
82786898 GGTAATTT
1 GGTAATTT
82786906 CACAATCAAG
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.04
27 69 0.91
28 4 0.05
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:82786892 original size:54 final size:55
Alignment explanation
Indices: 82786790--82786906 Score: 166
Period size: 54 Copynumber: 2.2 Consensus size: 55
82786780 GGGGCAAAAT
*
82786790 GGTAATTT-TACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTCTACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
* * * * *
82786844 GGT-ATTTCTACCCTACAAGGGTATTTCGATAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTCTACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
82786898 GGTAATTTC
1 GGTAATTTC
82786907 ACAATCAAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
53 4 0.07
54 46 0.84
55 5 0.09
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (55 bp):
GGTAATTTCTACCCCACAAAGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:82786947 original size:27 final size:27
Alignment explanation
Indices: 82786909--82787640 Score: 890
Period size: 27 Copynumber: 27.2 Consensus size: 27
82786899 GTAATTTCAC
*
82786909 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
82786936 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
82786963 AA-CTGAAGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
82786990 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787017 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787044 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
82787071 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
82787098 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787125 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
82787152 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787179 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787206 AATCGAGGGTAAAACAGTAATTCTGT-
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787232 AACCTGAGGGTAAAACGGTAATT-TGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
82787259 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
82787286 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
82787313 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787340 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
82787367 AATCGAGGGTAAATA--GTAATTCTGTA
1 AATCGAGGGTAAA-ACGGTAATTCTGTA
* *
82787393 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
82787420 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787447 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
82787474 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
82787501 AATCGAGAGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
82787528 AATCGAGGGTAAAACAGTAATTCTGT-
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
82787554 AACCTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
82787582 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
82787609 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
82787636 AATCG
1 AATCG
82787641 GGAGTACTTT
Statistics
Matches: 605, Mismatches: 82, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.00
26 50 0.08
27 545 0.90
28 8 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:82788597 original size:40 final size:40
Alignment explanation
Indices: 82788533--82788822 Score: 319
Period size: 40 Copynumber: 7.2 Consensus size: 40
82788523 TACAAAACTA
* *
82788533 GCCAAACATAAGCTCATAAGAGCTAATCCAACCGAAACAT
1 GCCAGACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT
* *
82788573 GCCAGATAGAAGCTCATAAGAGCTAATCCAACCGAAACAC
1 GCCAGACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT
* * *
82788613 GCTAGACAAAAGCTCACAAGAGCTAATCCAACCGAAACAT
1 GCCAGACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT
* * * ** * *
82788653 GCCAGATAGAAGATCATAAGAGCTAATCAAACTAAAAAAC
1 GCCAGACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT
* * * * * * *
82788693 ACTAGATAGAAGTTCACAGGAGTTAATCCAACCGAAACAT
1 GCCAGACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT
** * * * *
82788733 GCTTGGCAGAAGCTCACAAGAGCTAATCCAATCAAAACAT
1 GCCAGACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT
*
82788773 GCCAGACAGAAGCTCATAAGAGCTAATCCAACCAAAACAT
1 GCCAGACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT
*
82788813 ACCAGACAGA
1 GCCAGACAGA
82788823 GAGTATAACA
Statistics
Matches: 205, Mismatches: 45, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 205 1.00
ACGTcount: A:0.45, C:0.25, G:0.16, T:0.14
Consensus pattern (40 bp):
GCCAGACAGAAGCTCATAAGAGCTAATCCAACCGAAACAT
Found at i:82810227 original size:41 final size:41
Alignment explanation
Indices: 82810171--82810332 Score: 243
Period size: 41 Copynumber: 4.0 Consensus size: 41
82810161 GCTGAAGTTG
*
82810171 TATCTCAATCTCGCACACTAAGTGCCATACATAGCCGAAGC
1 TATCTCGATCTCGCACACTAAGTGCCATACATAGCCGAAGC
* * *
82810212 TATCTCGATCTCGCACACTAAATGTCATACATAGCTGAAGC
1 TATCTCGATCTCGCACACTAAGTGCCATACATAGCCGAAGC
*
82810253 TATCTCGATCTCGCACATTAAGTGCCATACATAGCCGAAGC
1 TATCTCGATCTCGCACACTAAGTGCCATACATAGCCGAAGC
* * * *
82810294 TATCTCGATCTCGTACACTAAGTGCTACACATAGTCGAA
1 TATCTCGATCTCGCACACTAAGTGCCATACATAGCCGAA
82810333 TTTTTGTTGA
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 108 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (41 bp):
TATCTCGATCTCGCACACTAAGTGCCATACATAGCCGAAGC
Found at i:82815477 original size:29 final size:29
Alignment explanation
Indices: 82815430--82815485 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
82815420 ATGTCAATTC
*
82815430 AACCAATTAACCGAATTTTAGTAAACATT
1 AACCAATTAAACGAATTTTAGTAAACATT
* *
82815459 AACCGATTAAACGACTTTTAGTAAACA
1 AACCAATTAAACGAATTTTAGTAAACA
82815486 AATATGTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.29
Consensus pattern (29 bp):
AACCAATTAAACGAATTTTAGTAAACATT
Found at i:82816813 original size:22 final size:22
Alignment explanation
Indices: 82816787--82816830 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
82816777 GAAAATGATC
*
82816787 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
82816809 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
82816831 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:82819202 original size:39 final size:39
Alignment explanation
Indices: 82819118--82819224 Score: 162
Period size: 39 Copynumber: 2.7 Consensus size: 39
82819108 GGTAGCCCGT
* * *
82819118 ACAAATGCCTTCGGGACTTAACCCAGATATCACAACTAGC
1 ACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTAGC
*
82819158 A-AATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGC
1 ACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTAGC
82819196 ACAATTGCCTTCGGGCTTAGCCCGGATAT
1 ACAATTGCCTTCGGGCTTAGCCCGGATAT
82819225 TACCCGAACA
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
38 22 0.35
39 39 0.63
40 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (39 bp):
ACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTAGC
Found at i:82827114 original size:39 final size:39
Alignment explanation
Indices: 82827036--82827146 Score: 195
Period size: 39 Copynumber: 2.8 Consensus size: 39
82827026 TATGGTAGCC
* *
82827036 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
82827076 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
82827115 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
82827147 TACCCGAACA
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 52 0.75
40 17 0.25
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:82835278 original size:19 final size:18
Alignment explanation
Indices: 82835241--82835284 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
82835231 ATACATACAG
82835241 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
82835258 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
82835277 TACTAATT
1 TAATAATT
82835285 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:82839511 original size:19 final size:18
Alignment explanation
Indices: 82839474--82839517 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
82839464 ATACATACAG
82839474 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
82839491 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
82839510 TACTAATT
1 TAATAATT
82839518 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:82843827 original size:19 final size:18
Alignment explanation
Indices: 82843790--82843833 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
82843780 ATACATACAG
82843790 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
82843807 TAATAATTTTATCTTATAA
1 TAATAATTTT-TCTAATAA
*
82843826 TACTAATT
1 TAATAATT
82843834 AAAATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:82849215 original size:12 final size:12
Alignment explanation
Indices: 82849198--82849223 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82849188 GACATCACTA
82849198 GAAATTCATAGT
1 GAAATTCATAGT
82849210 GAAATTCATAGT
1 GAAATTCATAGT
82849222 GA
1 GA
82849224 CCATATTACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (12 bp):
GAAATTCATAGT
Found at i:82852654 original size:44 final size:42
Alignment explanation
Indices: 82852504--82852661 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
82852494 GCTCGTACAG
* * *
82852504 TGCCAAAGTCCCATACGTGGTCTTACATGT-AATCAAATATCGA
1 TGCCAATGTCCCAGACGTGGTCTTACACGTAAATC-AA-ATCGA
* *
82852547 TGCCATTGTCCCAGACAG-GGTCTTACATG-AAATCAAATACGA
1 TGCCAATGTCCCAGAC-GTGGTCTTACACGTAAATCAAAT-CGA
* * *
82852589 TGCCAATGTCCTAGACATGGTCTTACACGTAAAGCATAAGTCGA
1 TGCCAATGTCCCAGACGTGGTCTTACACGTAAATCA-AA-TCGA
*
82852633 TGCTAATGTCCCAGACGTGGTCTTACACG
1 TGCCAATGTCCCAGACGTGGTCTTACACG
82852662 AAAACACATA
Statistics
Matches: 97, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 33 0.34
44 32 0.33
45 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (42 bp):
TGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAAATCGA
Found at i:82855597 original size:42 final size:42
Alignment explanation
Indices: 82855484--82855650 Score: 183
Period size: 43 Copynumber: 3.9 Consensus size: 42
82855474 CGAAAAGCTC
* * * * * *
82855484 ATACAATGCCAAAGTCCCATACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
* * *
82855526 ATATCGATGCCATTGTCCCAGATAGGGTCTTACACGAAATCAA
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
*
82855569 ATACGATGCCAATGTCCTAGACATGGTCTTACACGTAAATCATA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACG-AAATCA-A
* *
82855613 AGT-CGATGCTAATGTCCCAGACATGGCCTTACACGAAA
1 A-TACGATGCCAATGTCCCAGACATGGTCTTACACGAAA
82855651 ACACATATCG
Statistics
Matches: 105, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
42 31 0.30
43 42 0.40
44 31 0.30
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
Done.