Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 279 of 328
Found at i:83501268 original size:66 final size:66
Alignment explanation
Indices: 83501162--83501292 Score: 253
Period size: 66 Copynumber: 2.0 Consensus size: 66
83501152 TAGAATTTGC
*
83501162 CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
1 CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATAGCAGGAAAT
83501227 G
66 G
83501228 CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATAGCAGGAAAT
1 CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATAGCAGGAAAT
83501293 ACTGAACTCC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (66 bp):
CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATAGCAGGAAAT
G
Found at i:83507584 original size:10 final size:10
Alignment explanation
Indices: 83507569--83507597 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
83507559 GAAATGTTTG
83507569 ATGATATAAT
1 ATGATATAAT
83507579 ATGATATAAT
1 ATGATATAAT
83507589 A-GATATAAT
1 ATGATATAAT
83507598 TTTTTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (10 bp):
ATGATATAAT
Found at i:83507863 original size:37 final size:37
Alignment explanation
Indices: 83507817--83507958 Score: 117
Period size: 37 Copynumber: 3.8 Consensus size: 37
83507807 TGTTTTCAGT
* * * *
83507817 TGGACTAGCTCTTCGGAGTAATTGGCGTGTTATCGGG
1 TGGATTAGCTCTTAGGAGCAATTGGCGTGTTATCGAG
* * * * *
83507854 TGGATTAGCTATTATGAGCATTTGGTGTTTTATCGAG
1 TGGATTAGCTCTTAGGAGCAATTGGCGTGTTATCGAG
* **
83507891 TGGATTAGCTCTTATGAGC-ATCTAACGTGTTATC-AG
1 TGGATTAGCTCTTAGGAGCAAT-TGGCGTGTTATCGAG
* * *
83507927 ATGGATTAGCTCTTACGAGCGATTGTCGTGTT
1 -TGGATTAGCTCTTAGGAGCAATTGGCGTGTT
83507959 TCGGTTGGAA
Statistics
Matches: 84, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
36 3 0.04
37 79 0.94
38 2 0.02
ACGTcount: A:0.20, C:0.14, G:0.28, T:0.37
Consensus pattern (37 bp):
TGGATTAGCTCTTAGGAGCAATTGGCGTGTTATCGAG
Found at i:83508390 original size:18 final size:18
Alignment explanation
Indices: 83508367--83508407 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
83508357 GTAAAATTTT
83508367 AAGTATGATCTTAAATGA
1 AAGTATGATCTTAAATGA
83508385 AAGTATGATCTTAAATGA
1 AAGTATGATCTTAAATGA
83508403 AAGTA
1 AAGTA
83508408 GTTAACTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (18 bp):
AAGTATGATCTTAAATGA
Found at i:83512847 original size:14 final size:15
Alignment explanation
Indices: 83512819--83512847 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83512809 CTCTGTCAAG
83512819 GACAAGAATAATCCA
1 GACAAGAATAATCCA
83512834 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
83512848 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:83513548 original size:15 final size:15
Alignment explanation
Indices: 83513528--83513556 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
83513518 GAAGCCCAGA
83513528 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
83513543 ATAAGGAAATCCAA
1 ATAAGGAAATCCAA
83513557 TTTACAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:83519037 original size:13 final size:13
Alignment explanation
Indices: 83519013--83519074 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
83519003 AGTTTGGCAA
*
83519013 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
*
83519026 TACTTTTGAAAAG
1 TGCTTTTGAAAAG
*
83519039 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
83519052 TGCTTTT-AAGAAG
1 TGCTTTTGAA-AAG
83519065 TGCTTTTGAA
1 TGCTTTTGAA
83519075 CAGTTTGGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
12 4 0.10
13 32 0.80
14 4 0.10
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:83521217 original size:71 final size:72
Alignment explanation
Indices: 83521102--83521361 Score: 375
Period size: 72 Copynumber: 3.7 Consensus size: 72
83521092 CCTGTGAATC
* * * * **
83521102 AATTTTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGT
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGT
83521164 AGAACATA
65 AGAACATA
*
83521172 AATTTAATATCCAAAAATCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
* *
83521237 AAATATA
66 GAACATA
* *
83521244 AATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTA
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
83521309 GAACATA
66 GAACATA
*
83521316 AA-TTAATATCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
83521362 TTTAGCATTG
Statistics
Matches: 172, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
70 11 0.06
71 75 0.44
72 86 0.50
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (72 bp):
AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
GAACATA
Found at i:83521809 original size:18 final size:18
Alignment explanation
Indices: 83521786--83521855 Score: 113
Period size: 18 Copynumber: 3.9 Consensus size: 18
83521776 CATTTCCATC
*
83521786 AATGTGAGCATCATTTGA
1 AATGTGAACATCATTTGA
83521804 AATGTGAACATCATTTGA
1 AATGTGAACATCATTTGA
* *
83521822 AATCTGAACATCATTTAA
1 AATGTGAACATCATTTGA
83521840 AATGTGAACATCATTT
1 AATGTGAACATCATTT
83521856 CTCACATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (18 bp):
AATGTGAACATCATTTGA
Found at i:83523301 original size:11 final size:10
Alignment explanation
Indices: 83523285--83523324 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
83523275 AGGGAAGTCT
83523285 ATTTATTTTCC
1 ATTTA-TTTCC
*
83523296 ATTTATTCCC
1 ATTTATTTCC
83523306 ATTTATTTCC
1 ATTTATTTCC
83523316 AATTTATTT
1 -ATTTATTT
83523325 TAAATTTCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 13 0.50
11 13 0.50
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (10 bp):
ATTTATTTCC
Found at i:83527550 original size:31 final size:31
Alignment explanation
Indices: 83527512--83527573 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
83527502 AAACTTGGGA
83527512 GAATGAGGAAAAGTGACCGAATTGCCACTAC
1 GAATGAGGAAAAGTGACCGAATTGCCACTAC
*
83527543 GAATGAGGAAAAGTGGCCGAATTGCCACTAC
1 GAATGAGGAAAAGTGACCGAATTGCCACTAC
83527574 TAATTTCATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.16
Consensus pattern (31 bp):
GAATGAGGAAAAGTGACCGAATTGCCACTAC
Found at i:83532772 original size:28 final size:28
Alignment explanation
Indices: 83532740--83532798 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
83532730 TGTCTATCGA
*
83532740 TTGTACTACAGTATCAATATACACTAAC
1 TTGTACTACAATATCAATATACACTAAC
*
83532768 TTGTACTACAATATTAATATACACTAAC
1 TTGTACTACAATATCAATATACACTAAC
83532796 TTG
1 TTG
83532799 AGTGTTTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.36
Consensus pattern (28 bp):
TTGTACTACAATATCAATATACACTAAC
Found at i:83533960 original size:45 final size:45
Alignment explanation
Indices: 83533910--83534212 Score: 398
Period size: 45 Copynumber: 6.8 Consensus size: 45
83533900 TCTACGACAC
* *
83533910 AATCTACATGTATGAGTTTGCCATATCTATGAATCTTCTACTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
83533955 AATCTACATGTATGATTTCGCCATATCTATGAATCTTCTTCTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
83534000 AATCCGCA-GTATGAGTTCGCTATATCTATGAATCTTCTTCTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
83534044 AATCTACA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * **
83534088 AATTTGCATGTATGAGTTCGCCATATCTATGAATATTCTTTTATG
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
* * *
83534133 AACCTGCATGTATGAGTTCACTATATCTATGAATCTTCTACTAT-
1 AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
83534177 AAGT-TCGCATGTATGAGTTCGCCATATCTATGAATC
1 AA-TCT-GCATGTATGAGTTCGCCATATCTATGAATC
83534213 CAATTCTGCG
Statistics
Matches: 225, Mismatches: 30, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
44 81 0.36
45 144 0.64
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (45 bp):
AATCTGCATGTATGAGTTCGCCATATCTATGAATCTTCTACTATG
Found at i:83534044 original size:89 final size:90
Alignment explanation
Indices: 83533916--83534212 Score: 422
Period size: 89 Copynumber: 3.3 Consensus size: 90
83533906 ACACAATCTA
* *
83533916 CATGTATGAGTTTGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGATTTCGCCATAT
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
* *
83533981 CTATGAATCTTCTTCTATGAATCCG
66 CTATGAATCTTCTACTATGAATTCG
* *
83534006 CA-GTATGAGTTCGCTATATCTATGAATCTTCTTCTATGAATCTACA-ATATGAGTTT-GCCATA
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGA-TTTCGCCATA
*
83534068 TCTATGAATCTTCTACTATGAATTTG
65 TCTATGAATCTTCTACTATGAATTCG
* * * * * * *
83534094 CATGTATGAGTTCGCCATATCTATGAATATTCTTTTATGAACCTGCATGTATGAGTTCACTATAT
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
83534159 CTATGAATCTTCTACTAT-AAGTTCG
66 CTATGAATCTTCTACTATGAA-TTCG
83534184 CATGTATGAGTTCGCCATATCTATGAATC
1 CATGTATGAGTTCGCCATATCTATGAATC
83534213 CAATTCTGCG
Statistics
Matches: 184, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
88 36 0.20
89 87 0.47
90 61 0.33
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (90 bp):
CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCTACATGTATGATTTCGCCATAT
CTATGAATCTTCTACTATGAATTCG
Found at i:83534133 original size:133 final size:134
Alignment explanation
Indices: 83533910--83534212 Score: 452
Period size: 133 Copynumber: 2.3 Consensus size: 134
83533900 TCTACGACAC
*
83533910 AATCTACATGTATGAGTTTGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGATTTCG
1 AATCTACATGTATGAGTTTGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGAGTTCG
* *
83533975 CCATATCTATGAATCTTCTTCTATGAATCC-GCA-GTATGAGTTCGCTATATCTATGAATCTTCT
66 CCATATCTATGAATATTCTTCTATGAA-CCTGCATGTATGAGTTCACTATATCTATGAATCTTCT
*
83534038 TCTAT
130 ACTAT
* * *
83534043 GAATCTACA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATGAATTTGCATGTATGAGTTC
1 -AATCTACATGTATGAGTTTGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGAGTTC
*
83534107 GCCATATCTATGAATATTCTTTTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTCT
65 GCCATATCTATGAATATTCTTCTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTCT
83534172 ACTAT
130 ACTAT
* *
83534177 AAGT-TCGCATGTATGAGTTCGCCATATCTATGAATC
1 AA-TCT-ACATGTATGAGTTTGCCATATCTATGAATC
83534213 CAATTCTGCG
Statistics
Matches: 153, Mismatches: 11, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
132 2 0.01
133 83 0.54
134 44 0.29
135 24 0.16
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (134 bp):
AATCTACATGTATGAGTTTGCCATATCTATGAATCTTCTACTATGAATCTACATGTATGAGTTCG
CCATATCTATGAATATTCTTCTATGAACCTGCATGTATGAGTTCACTATATCTATGAATCTTCTA
CTAT
Found at i:83534232 original size:90 final size:89
Alignment explanation
Indices: 83533916--83534247 Score: 349
Period size: 90 Copynumber: 3.7 Consensus size: 89
83533906 ACACAATCTA
* * * *
83533916 CATGTATGAGTTTGCCATATCTATGAATCTTCTACTATGA-ATCTACATGTATGATTTCGCCATA
1 CATGTATGAGTTCGCCATATCTATGAATCAT-T-CTATGAGATCTGCATGTATGAGTTCGCCATA
* *
83533980 TCTATGAATCTTCTTCTATGAATCCG
64 TCTATGAATCTTCTACTATGAATTCG
* * * * *
83534006 CA-GTATGAGTTCGCTATATCTATGAATCTTCTTCTATGA-ATCTACA-ATATGAGTTTGCCATA
1 CATGTATGAGTTCGCCATATCTATGAATC--ATTCTATGAGATCTGCATGTATGAGTTCGCCATA
*
83534068 TCTATGAATCTTCTACTATGAATTTG
64 TCTATGAATCTTCTACTATGAATTCG
* * *
83534094 CATGTATGAGTTCGCCATATCTATGAAT-ATTCTTTTATGA-ACCTGCATGTATGAGTTCACTAT
1 CATGTATGAGTTCGCCATATCTATGAATCATTC---TATGAGATCTGCATGTATGAGTTCGCCAT
83534157 ATCTATGAATCTTCTACTAT-AAGTTCG
63 ATCTATGAATCTTCTACTATGAA-TTCG
** *
83534184 CATGTATGAGTTCGCCATATCTATGAATCCAATTCTGCGAGTTC-GCATGTATGAGTTCG-CATA
1 CATGTATGAGTTCGCCATATCTATGAAT-C-ATTCTATGAGATCTGCATGTATGAGTTCGCCATA
83534247 T
64 T
83534248 AAGAATCCAC
Statistics
Matches: 206, Mismatches: 24, Indels: 25
0.81 0.09 0.10
Matches are distributed among these distances:
86 3 0.01
88 38 0.18
89 77 0.37
90 82 0.40
91 2 0.01
93 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (89 bp):
CATGTATGAGTTCGCCATATCTATGAATCATTCTATGAGATCTGCATGTATGAGTTCGCCATATC
TATGAATCTTCTACTATGAATTCG
Found at i:83535571 original size:102 final size:102
Alignment explanation
Indices: 83535395--83535580 Score: 228
Period size: 102 Copynumber: 1.8 Consensus size: 102
83535385 AGTGAGGTGT
* * * * *
83535395 AACGTATTTAGCTTATTTTTTATCTCACATTATAGTATTACTACAGTATCTAATTTCACCGTCAT
1 AACGTATTGAGCTTATTTTTTATCTCACATTATAATATTACTACAATATCTAATCTCACCATCAT
*
83535460 TACTATTTTTACATTAACTGTAAGGACGATAGAGTAC
66 CACTATTTTTACATTAACTGTAAGGACGATAGAGTAC
* * ** * * **
83535497 AACGTATTGAGCTTATTTTTTATTTTATGTTATAATATTATTACAATATTTAATCTCGTCATCAT
1 AACGTATTGAGCTTATTTTTTATCTCACATTATAATATTACTACAATATCTAATCTCACCATCAT
* *
83535562 CATTATTTTTATATTAACT
66 CACTATTTTTACATTAACT
83535581 ATAAATAAAT
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
102 68 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (102 bp):
AACGTATTGAGCTTATTTTTTATCTCACATTATAATATTACTACAATATCTAATCTCACCATCAT
CACTATTTTTACATTAACTGTAAGGACGATAGAGTAC
Found at i:83544333 original size:1 final size:1
Alignment explanation
Indices: 83544327--83544353 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
83544317 AGTGTTTCGC
83544327 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
83544354 TCGATGAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:83544687 original size:3 final size:3
Alignment explanation
Indices: 83544679--83544718 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
83544669 CCAAAGAATA
83544679 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
83544719 CTAAACAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:83548207 original size:1 final size:1
Alignment explanation
Indices: 83548201--83548225 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
83548191 TCGAAACTAT
83548201 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
83548226 CACAAGAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:83552434 original size:2 final size:2
Alignment explanation
Indices: 83552427--83552456 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
83552417 TTGTATTTTA
83552427 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83552457 TCCTACTCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83553571 original size:34 final size:33
Alignment explanation
Indices: 83553515--83553792 Score: 135
Period size: 34 Copynumber: 9.0 Consensus size: 33
83553505 TAAAATTATT
*
83553515 TAAATTACGGTTTA-GAGTTTTTAAATAAATTAAA
1 TAAATTAGGGTTTATG-G-TTTTAAATAAATTAAA
*
83553549 TAAATTAGGGTTTTATGGTTTTAAATCAA-T---
1 TAAATTAGGG-TTTATGGTTTTAAATAAATTAAA
*
83553579 T--A--A--G-TTAGGGTTTTAAATAAATT--A
1 TAAATTAGGGTTTATGGTTTTAAATAAATTAAA
** * * *
83553603 TAGTTTAGGGTTTATAGTTTTTAAATAAATTTAG
1 TAAATTAGGGTTTAT-GGTTTTAAATAAATTAAA
* *
83553637 TAAATTAGGGTTCTA-GGGTTT---TGAA-T--A
1 TAAATTAGGGTT-TATGGTTTTAAATAAATTAAA
* *
83553664 --AATTAGGGTTTAGGGTTTTTAAATAAATTAAG
1 TAAATTAGGGTTTATGG-TTTTAAATAAATTAAA
*
83553696 TAAATTAGGGTTCTATGGTTTTAAAT-AAGT---
1 TAAATTAGGGTT-TATGGTTTTAAATAAATTAAA
* *
83553726 TAAATTAGGGTTTATGGTTTTTAGATAAATTAAG
1 TAAATTAGGGTTTATGG-TTTTAAATAAATTAAA
83553760 TAAATTAGGGTTCTA-GGATTTTAAATAAATTAA
1 TAAATTAGGGTT-TATGG-TTTTAAATAAATTAA
83553793 TTCAGGGTGT
Statistics
Matches: 189, Mismatches: 23, Indels: 64
0.68 0.08 0.23
Matches are distributed among these distances:
22 15 0.08
23 1 0.01
24 4 0.02
25 12 0.06
26 4 0.02
28 2 0.01
29 9 0.05
30 25 0.13
31 6 0.03
32 14 0.07
33 8 0.04
34 75 0.40
35 13 0.07
36 1 0.01
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (33 bp):
TAAATTAGGGTTTATGGTTTTAAATAAATTAAA
Found at i:83553593 original size:22 final size:24
Alignment explanation
Indices: 83553544--83553615 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 24
83553534 TTTAAATAAA
** *
83553544 TTAAATAAATTAGGGTTTTATGGTT
1 TTAAATAAATTATAG-TTTAGGGTT
*
83553569 TTAAATCAATTA-AG-TTAGGGTT
1 TTAAATAAATTATAGTTTAGGGTT
83553591 TTAAATAAATTATAGTTTAGGGTT
1 TTAAATAAATTATAGTTTAGGGTT
83553615 T
1 T
83553616 ATAGTTTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
22 18 0.44
23 2 0.05
24 10 0.24
25 11 0.27
ACGTcount: A:0.35, C:0.01, G:0.18, T:0.46
Consensus pattern (24 bp):
TTAAATAAATTATAGTTTAGGGTT
Found at i:83553682 original size:24 final size:26
Alignment explanation
Indices: 83553637--83553693 Score: 91
Period size: 25 Copynumber: 2.3 Consensus size: 26
83553627 ATAAATTTAG
*
83553637 TAAATTAGGGTTCTAGGG-TTTTGAA
1 TAAATTAGGGTTCTAGGGTTTTTAAA
83553662 TAAATTAGGGTT-TAGGGTTTTTAAA
1 TAAATTAGGGTTCTAGGGTTTTTAAA
83553687 TAAATTA
1 TAAATTA
83553694 AGTAAATTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.17
25 25 0.83
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (26 bp):
TAAATTAGGGTTCTAGGGTTTTTAAA
Found at i:83553682 original size:59 final size:59
Alignment explanation
Indices: 83553607--83553791 Score: 262
Period size: 59 Copynumber: 3.1 Consensus size: 59
83553597 AAATTATAGT
* * *
83553607 TTAGGGTTTATAGTTTTTAAATAAATTTAGTAAATTAGGGTTCTAGGGTTTTGAATAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
* *
83553666 TTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTTAAATAAGTTAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTT--A-AA--TAAA
* *
83553730 TTAGGGTTTATGGTTTTTAGATAAATTAAGTAAATTAGGGTTCTAGGATTTTAAATAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
83553789 TTA
1 TTA
83553792 ATTCAGGGTG
Statistics
Matches: 112, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
59 55 0.49
61 2 0.02
62 3 0.03
64 52 0.46
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (59 bp):
TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
Found at i:83553730 original size:30 final size:31
Alignment explanation
Indices: 83553687--83553785 Score: 116
Period size: 30 Copynumber: 3.2 Consensus size: 31
83553677 GGTTTTTAAA
83553687 TAAATTAAGTAAATTAGGGTTCTATGG-TTT
1 TAAATTAAGTAAATTAGGGTTCTATGGTTTT
83553717 TAAA-TAAGTTAAATTAGGGTT-TATGGTTTTT
1 TAAATTAAG-TAAATTAGGGTTCTATGG-TTTT
*
83553748 AGATAAATTAAGTAAATTAGGGTTCTA-GGATTT
1 ---TAAATTAAGTAAATTAGGGTTCTATGGTTTT
83553781 TAAAT
1 TAAAT
83553786 AAATTAATTC
Statistics
Matches: 60, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
29 9 0.15
30 21 0.35
31 3 0.05
33 3 0.05
34 18 0.30
35 6 0.10
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.42
Consensus pattern (31 bp):
TAAATTAAGTAAATTAGGGTTCTATGGTTTT
Found at i:83553755 original size:64 final size:63
Alignment explanation
Indices: 83553587--83553809 Score: 276
Period size: 64 Copynumber: 3.5 Consensus size: 63
83553577 ATTAAGTTAG
* ** *
83553587 GGTTTTAAATAAATTATAGTTTAGGGTTTATAGTTTTTAAATAAATTTAGTAAATTAGGGTTCTA
1 GGTTTTAAATAAATTA-A-ATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
* *
83553652 GGGTTT---TGAA-TAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
1 GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
* * *
83553711 TGGTTTTAAATAAGTTAAATTAGGGTTTATGGTTTTTAGATAAATTAAGTAAATTAGGGTTCTA
1 -GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
*
83553775 GGATTTTAAATAAATT-AATTCAGGGTGTAGGGTTT
1 GG-TTTTAAATAAATTAAATT-AGGGTTTAGGGTTT
83553810 AGGGTTAAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
59 42 0.31
60 6 0.04
61 2 0.01
62 3 0.02
63 8 0.06
64 71 0.52
65 5 0.04
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.43
Consensus pattern (63 bp):
GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
Found at i:83553819 original size:64 final size:63
Alignment explanation
Indices: 83553584--83553845 Score: 266
Period size: 64 Copynumber: 4.1 Consensus size: 63
83553574 TCAATTAAGT
* ** * *
83553584 TAGGGTTTTAAATAAATTATAGTTTAGGGTTTATAGTTTTTAAATAAATTTAGTAAATTAGGGTT
1 TAGGATTTTAAATAAATTA-A--TTAGGGTTTAGGGTTTTTAGATAAATTAAGTAAATTAGGGTT
83553649 C
63 C
* * *
83553650 TAGGGTTTTGAAT--A--AATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTC
1 TAGGATTTTAAATAAATTAATTAGGGTTTAGGGTTTTTAGATAAATTAAGTAAATTAGGGTTC
* *
83553709 TATGG-TTTTAAATAAGTTAAATTAGGGTTTATGGTTTTTAGATAAATTAAGTAAATTAGGGTTC
1 TA-GGATTTTAAATAAATT-AATTAGGGTTTAGGGTTTTTAGATAAATTAAGTAAATTAGGGTTC
* *** * *
83553773 TAGGATTTTAAATAAATTAATTCAGGGTGTAGGGTTTAGGGTTAAATTTAATTAAATTAGGGTT-
1 TAGGATTTTAAATAAATTAATT-AGGGTTTAGGGTTTTTAGATAAA-TTAAGTAAATTAGGGTTC
*
83553837 TAAGATTTT
1 TAGGATTTT
83553846 TTTTAAAATA
Statistics
Matches: 170, Mismatches: 17, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
59 49 0.29
60 2 0.01
61 1 0.01
62 1 0.01
63 6 0.04
64 83 0.49
65 16 0.09
66 12 0.07
ACGTcount: A:0.34, C:0.02, G:0.21, T:0.43
Consensus pattern (63 bp):
TAGGATTTTAAATAAATTAATTAGGGTTTAGGGTTTTTAGATAAATTAAGTAAATTAGGGTTC
Found at i:83554173 original size:127 final size:126
Alignment explanation
Indices: 83553901--83554356 Score: 671
Period size: 126 Copynumber: 3.6 Consensus size: 126
83553891 TTGTACCCTT
*
83553901 AAAAAATAATTTTGAGAAGACGTTTTTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * * *
83553966 TGTCTGCAAAAATACAGAAAAAAGCTCTCACGTGAACGCTCTTATTCTACAATAGTTCCTG
66 TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAATAGTTCCTG
* * *
83554027 AAAAAATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCCAAAACGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* *
83554092 TGTCAGCAAAATTATAGAAAAAAGGCTCCCACGTGGACGGTCTTTTTCTACAGTAGTTCCTG
66 TGTCAGCAAAATTATAGAAAAAA-GCTCCCACGTGGACGCTCTTTTTCTACAATAGTTCCTG
* * * *
83554154 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTTAAAAACCCTTCAAGCAGGATGCAT
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * *
83554219 TGTTAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGTTCATTTTCAACATTAGTTCCT-
66 TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAATAGTTCCTG
* * *
83554279 AAAAAATAATTTCGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAA
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
*
83554344 TGTCAGTAAAATT
66 TGTCAGCAAAATT
83554357 TCTGAAAAAA
Statistics
Matches: 299, Mismatches: 30, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
125 70 0.23
126 116 0.39
127 113 0.38
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAATAGTTCCTG
Found at i:83554371 original size:18 final size:18
Alignment explanation
Indices: 83554348--83554385 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
83554338 ATGCAATGTC
83554348 AGTAAAATTTCTGAAAAA
1 AGTAAAATTTCTGAAAAA
83554366 AGTAAAATTTCTGAAAAA
1 AGTAAAATTTCTGAAAAA
83554384 AG
1 AG
83554386 CTCCCACGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.26
Consensus pattern (18 bp):
AGTAAAATTTCTGAAAAA
Found at i:83557895 original size:18 final size:18
Alignment explanation
Indices: 83557869--83557911 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
83557859 GACTAAGAAA
* *
83557869 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
*
83557887 AGGATACATGTAAGGGCT
1 AGGATACATATAAGGGCT
83557905 AGGATAC
1 AGGATAC
83557912 GCACCTAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:83559513 original size:19 final size:18
Alignment explanation
Indices: 83559491--83559557 Score: 64
Period size: 19 Copynumber: 3.6 Consensus size: 18
83559481 CATAAATGAA
83559491 AAAATATTAAATAATATTC
1 AAAAT-TTAAATAATATTC
***
83559510 AAAATTTAAAATAA-ACGAA
1 AAAATTT-AAATAATA-TTC
83559529 AAAATATTAAATAATATTC
1 AAAAT-TTAAATAATATTC
83559548 AAAATTTAAA
1 AAAATTTAAA
83559558 ACAAACCGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 8 0.21
19 27 0.71
20 3 0.08
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (18 bp):
AAAATTTAAATAATATTC
Found at i:83559530 original size:38 final size:38
Alignment explanation
Indices: 83559482--83559563 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
83559472 TTAAAATTAC
*
83559482 ATAAATGAAAAAATATTAAATAATATTCAAAATTTAAA
1 ATAAACGAAAAAATATTAAATAATATTCAAAATTTAAA
83559520 ATAAACGAAAAAATATTAAATAATATTCAAAATTTAAA
1 ATAAACGAAAAAATATTAAATAATATTCAAAATTTAAA
*
83559558 ACAAAC
1 ATAAAC
83559564 CGTTACTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.28
Consensus pattern (38 bp):
ATAAACGAAAAAATATTAAATAATATTCAAAATTTAAA
Found at i:83561241 original size:23 final size:23
Alignment explanation
Indices: 83561196--83561241 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
83561186 ATACTACGTG
* *
83561196 TTGTATTGTGAAAATACTACAAA
1 TTGTATTGTAAAAATAATACAAA
*
83561219 TTGTATTGTAAAAATAATGCAAA
1 TTGTATTGTAAAAATAATACAAA
83561242 CAATGTTGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.35
Consensus pattern (23 bp):
TTGTATTGTAAAAATAATACAAA
Found at i:83561395 original size:54 final size:54
Alignment explanation
Indices: 83561297--83561411 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
83561287 ATTGTACTGG
** * *
83561297 AAATCTTGTAAGTATAAGGCTGTTATCTTAAATTAGCGAGCTGCAAGATTTCAA
1 AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAGCAAACTGCAAGATTTCAA
* * * *
83561351 AAATCTTGTAAGTATAAGGTTGGGATCTTAAA-TCGTTAAACTGCAAGATTTGAA
1 AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAG-CAAACTGCAAGATTTCAA
83561405 AAATCTT
1 AAATCTT
83561412 ACAATTTTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.04
54 50 0.96
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (54 bp):
AAATCTTGTAAGTATAAGGCTGGGATCTTAAATTAGCAAACTGCAAGATTTCAA
Found at i:83561492 original size:94 final size:93
Alignment explanation
Indices: 83561324--83561503 Score: 211
Period size: 94 Copynumber: 1.9 Consensus size: 93
83561314 GGCTGTTATC
* * ** *
83561324 TTAAATTAGCGAGCTGCAAGATTTCAAAAATCTTGTAAGTATAAGGTTGGGATCTTAAATCGTTA
1 TTAAATTAGCGAGCCGCAAGATTTCAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCG-AA
* **
83561389 AACTGCAAGATTTGAAAAATCTTACAATT
65 AACTACAAGATTCAAAAAATCTTACAATT
* *
83561418 TTAAATTGGCGAGCCGCAATA-TTCGAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATC-AA
1 TTAAATTAGCGAGCCGCAAGATTTC-AAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCGAA
*
83561481 CAAGTCACAAGATTCAAAAAATC
65 -AACT-ACAAGATTCAAAAAATC
83561504 CTGTAAGTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
92 1 0.01
93 6 0.08
94 65 0.90
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.29
Consensus pattern (93 bp):
TTAAATTAGCGAGCCGCAAGATTTCAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCGAAA
ACTACAAGATTCAAAAAATCTTACAATT
Found at i:83561501 original size:54 final size:54
Alignment explanation
Indices: 83561429--83561833 Score: 366
Period size: 54 Copynumber: 7.5 Consensus size: 54
83561419 TAAATTGGCG
* * * * *
83561429 AGCCGCAATATTCGAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCAACA
1 AGCCACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACA
* * * ***
83561483 AGTCACAAGATTCAAAAAATCCTGTAAGTATAAGGCTACGA-CTTAAATCGGTG
1 AGCCACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACA
* * * * *
83561536 AGCCGCAAGACTAAAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATCGACA
1 AGCCACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACA
* * *** * * * *
83561590 AACTACAAGATTTGGAAGATCTTGTAAGTATAAGGCTGCGATATTAAATTGACG
1 AGCCACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACA
* * ** * * ** *
83561644 AGCCATAATATTTGAAAAATCTTGTAAATATAAGGTTATGATCTTAAAGC-AGCA
1 AGCCACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGA-CA
**** *
83561698 AATTGCAAGATTCAAAAAATCTTATAAGTATAAGGCTGCGATCTTAAATCGACA
1 AGCCACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACA
** *
83561752 AGCCACAAGATTTGAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAAAT-GACA
1 AGCCACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTT-AAATCGACA
* * *
83561806 AACCGCAATATTCAAAAAATCTTGTAAG
1 AGCCACAAGATTCAAAAAATCTTGTAAG
83561834 CAGTGAATTG
Statistics
Matches: 271, Mismatches: 76, Indels: 8
0.76 0.21 0.02
Matches are distributed among these distances:
53 42 0.15
54 224 0.83
55 5 0.02
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (54 bp):
AGCCACAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACA
Found at i:83561751 original size:162 final size:162
Alignment explanation
Indices: 83561442--83561832 Score: 453
Period size: 162 Copynumber: 2.4 Consensus size: 162
83561432 CGCAATATTC
* * ** * *
83561442 GAAAAATCTTGTAAGTATAAGGCTGCAATCTT-AAATCAACAAGTCACAAGATTCAAAAAATCCT
1 GAAAAATCTTGTAAGTATAAGGCTGCAATATTAAAAT-GACAAACCACAATATTCAAAAAATCTT
* * * * * ** *** *
83561506 GTAAGTATAAGGCTACGA-CTTAAATCGGTGAGCCGCAAGACTAAAAAAATCTTGTAAGTATAAG
65 GTAAATATAAGGTTATGATCTTAAAGCAGCAAATTGCAAGACTAAAAAAATCTTATAAGTATAAG
* *
83561570 GTTGCAATCTTAAATCGACAAACTACAAGATTT
130 GCTGCAATCTTAAATCGACAAACCACAAGATTT
* * * * * * * **
83561603 GGAAGATCTTGTAAGTATAAGGCTGCGATATTAAATTGACGAGCCATAATATTTGAAAAATCTTG
1 GAAAAATCTTGTAAGTATAAGGCTGCAATATTAAAATGACAAACCACAATATTCAAAAAATCTTG
* *
83561668 TAAATATAAGGTTATGATCTTAAAGCAGCAAATTGCAAGATTCAAAAAATCTTATAAGTATAAGG
66 TAAATATAAGGTTATGATCTTAAAGCAGCAAATTGCAAGACTAAAAAAATCTTATAAGTATAAGG
* *
83561733 CTGCGATCTTAAATCGACAAGCCACAAGATTT
131 CTGCAATCTTAAATCGACAAACCACAAGATTT
* *
83561765 GAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAAATGACAAACCGCAATATTCAAAAAATCTTG
1 GAAAAATCTTGTAAGTATAAGGCTGCAATATTAAAATGACAAACCACAATATTCAAAAAATCTTG
83561830 TAA
66 TAA
83561833 GCAGTGAATT
Statistics
Matches: 187, Mismatches: 41, Indels: 3
0.81 0.18 0.01
Matches are distributed among these distances:
161 62 0.33
162 125 0.67
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (162 bp):
GAAAAATCTTGTAAGTATAAGGCTGCAATATTAAAATGACAAACCACAATATTCAAAAAATCTTG
TAAATATAAGGTTATGATCTTAAAGCAGCAAATTGCAAGACTAAAAAAATCTTATAAGTATAAGG
CTGCAATCTTAAATCGACAAACCACAAGATTT
Found at i:83566997 original size:40 final size:39
Alignment explanation
Indices: 83566829--83566999 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
83566819 AGAAATTGAA
* *
83566829 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
83566869 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
83566909 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
83566949 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
83566989 TGATATCCGGG
1 TGATATCCGGG
83567000 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:83574994 original size:40 final size:39
Alignment explanation
Indices: 83574826--83575010 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 39
83574816 AGAAATTGAA
* *
83574826 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
83574866 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
83574906 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
83574946 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
83574986 TGATATCCGGG-TAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
83575011 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 16 0.13
40 95 0.80
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:83578212 original size:40 final size:39
Alignment explanation
Indices: 83578111--83578258 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
83578101 GAGAAATTGA
* * * *
83578111 ATATCCGGGCTAAG-CCCGAAGACAATTATGCT-GAAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TA-GT
*
83578150 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAG-T
* *
83578190 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGT
*
83578229 -TATCCGGGCTAAGA-CCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
83578259 AAATCGTGAT
Statistics
Matches: 95, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
37 12 0.13
38 16 0.17
39 17 0.18
40 49 0.52
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGT
Found at i:83586299 original size:40 final size:39
Alignment explanation
Indices: 83586131--83586301 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
83586121 AGAAATTGAA
* *
83586131 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
83586171 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
83586211 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
83586251 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
83586291 TGATATCCGGG
1 TGATATCCGGG
83586302 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:83588725 original size:22 final size:21
Alignment explanation
Indices: 83588703--83588750 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
83588693 TATTATTTAT
83588703 TTAAAGAAAACATAAA-AAATA
1 TTAAA-AAAACATAAATAAATA
* *
83588724 TTAAAAATACTTAAATAAATA
1 TTAAAAAAACATAAATAAATA
83588745 GTTAAA
1 -TTAAA
83588751 TTAAATCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 8 0.35
21 10 0.43
22 5 0.22
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (21 bp):
TTAAAAAAACATAAATAAATA
Found at i:83590373 original size:21 final size:21
Alignment explanation
Indices: 83590347--83590400 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
83590337 AATTCTAGAC
83590347 CCCTAAACTTAAAACATTAAA
1 CCCTAAACTTAAAACATTAAA
* *
83590368 CCCTAAACTTTAAATATTAAA
1 CCCTAAACTTAAAACATTAAA
*
83590389 TCCTAAATCTTA
1 CCCTAAA-CTTA
83590401 TCCACCCTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.31
Consensus pattern (21 bp):
CCCTAAACTTAAAACATTAAA
Found at i:83591705 original size:90 final size:90
Alignment explanation
Indices: 83591570--83591845 Score: 322
Period size: 90 Copynumber: 3.1 Consensus size: 90
83591560 ACCTCAAAAA
* * * * * * *
83591570 TTGTAGGTTAATACGCTACTAGATGGATGTGAATGCACAACATATTTGCATATGAGAGCTGCTAG
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
** *
83591635 AATGTGGGTGGATAAACCA-TCGGTG
66 AAAATGGGTGGATAAACCACT-AGTG
* *
83591660 TTGTAGGTTAATACGCTGCCAGATGGTTATGAATGCACAACATATTTACAGATAAGAGTTGCCAG
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
*
83591725 AAAATGGGTGGATGAACCACTAGTG
66 AAAATGGGTGGATAAACCACTAGTG
* * **
83591750 TTGTAGGTTAAAACGCTGCCAGATGTTTGTGAATGCACAATGTATTT-CTAGATAAGAGCTGCCA
1 TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTAC-AGATAAGAGCTGCCA
** * * *
83591814 GAAAATCTGTGGATGAACCACCAGAG
65 GAAAATGGGTGGATAAACCACTAGTG
83591840 TTGTAG
1 TTGTAG
83591846 ATTATTAAAC
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
89 1 0.01
90 159 0.99
91 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (90 bp):
TTGTAGGTTAATACGCTGCCAGATGGTTGTGAATGCACAACATATTTACAGATAAGAGCTGCCAG
AAAATGGGTGGATAAACCACTAGTG
Found at i:83591958 original size:19 final size:19
Alignment explanation
Indices: 83591899--83591958 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 19
83591889 CCATGCAATG
83591899 CAATATGCTTATAACAGAT
1 CAATATGCTTATAACAGAT
*
83591918 CAATA--CAGTAGT-A-A-AT
1 CAATATGC-TTA-TAACAGAT
83591934 -AATATGCTTATAACAGAT
1 CAATATGCTTATAACAGAT
83591952 CAATATG
1 CAATATG
83591959 GCAACAATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 16
0.63 0.04 0.33
Matches are distributed among these distances:
15 5 0.16
16 5 0.16
17 4 0.13
18 5 0.16
19 12 0.39
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (19 bp):
CAATATGCTTATAACAGAT
Found at i:83598965 original size:14 final size:15
Alignment explanation
Indices: 83598937--83598971 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
83598927 TATTATCGGA
*
83598937 GTTTATAAAATAATT
1 GTTTATAAAAAAATT
83598952 GTTT-TAAAAAAATT
1 GTTTATAAAAAAATT
83598966 GTTTAT
1 GTTTAT
83598972 TTTAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (15 bp):
GTTTATAAAAAAATT
Found at i:83599938 original size:85 final size:86
Alignment explanation
Indices: 83599786--83599954 Score: 191
Period size: 85 Copynumber: 2.0 Consensus size: 86
83599776 AGATAAAAAC
* * * * * *
83599786 ATTTTCAGTTATTACCACTTGTTATGAGTGCACAACATGGTTTCAGATTAAACAAACTAGCATTG
1 ATTTACAGTTACTACCACTTATTATGAGTGCACAACATGATTGCAGATTAAACAAACTAGCACTG
83599851 GG-TTTATGGACAAGCCACAT
66 GGTTTTATGGACAAGCCACAT
* * * *
83599871 ATTTACAGTTACTGCCACTTATTGTGAGTGCACAACAT-ATTCGCATATTAAACAAA-TTGCCAC
1 ATTTACAGTTACTACCACTTATTATGAGTGCACAACATGATT-GCAGATTAAACAAACTAG-CAC
* *
83599934 TGGGTTTTGTGGACGAGCCAC
64 TGGGTTTTATGGACAAGCCAC
83599955 CACTTGTTTG
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
84 4 0.06
85 51 0.74
86 14 0.20
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (86 bp):
ATTTACAGTTACTACCACTTATTATGAGTGCACAACATGATTGCAGATTAAACAAACTAGCACTG
GGTTTTATGGACAAGCCACAT
Found at i:83600826 original size:522 final size:522
Alignment explanation
Indices: 83599832--83600877 Score: 1531
Period size: 522 Copynumber: 2.0 Consensus size: 522
83599822 ATGGTTTCAG
* *
83599832 ATTAAACAAACTAGCATTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
1 ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
* * * * *
83599897 AGTGCACAACATATTCGCATATTAAACAAATTGCCACTGGGTTTTGTGGACGAGCCACCACTTGT
66 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTGGATTTTGTGGACGAACCACCACTTGT
* * * *
83599962 TTGCAGATTTAATAAACTGTCACTCTTCCTCCGTACAATGTCTCATCCCATTCAATGCACTACGT
131 TTGAAGATTTAATAAACTATCACTCTTCCTCCGTACAATGTCTCATCCCATGCAATGCACTACAT
*
83600027 TATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTACTCAATTTATCACTAACAC
196 CATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTACTCAATTTATCACTAACAC
* * *
83600092 ATAACATGTTTTTCATGTTCTTCATAGGGCAGTAACAATATTATCACTTTCAATTTAACAGTTTC
261 ATAACATGTTTTTCATGTACTTCACAGGGCAGTAACAATATTATCACTTTAAATTTAACAGTTTC
*
83600157 ACTTTATCAGAAAACACATAACGTTCACGTATCATGCAAAGTAATAAGGGCACTTAAGGCATTAA
326 ACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCATTAA
* * * * *
83600222 ACACAAATTTCAAAATTCACCCAATATCAGGGACCTAATTGAGCAAGGATAAACTGTAAAAACAA
391 ACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAGCAAAGATAAACTCTAAAAACAA
* * *
83600287 TTTAGGGAATGTACAGGGATTAAACTGAACATTTCATAGTTCTACATAATATTAATAATTTCAAT
456 TTTAGAGAATGTACAGGGATTAAACTGAACACTTCATACTTCTACATAATATTAATAATTTCAAT
83600352 CA
521 CA
* * **
83600354 ATTAAACAAACTACCACTGGGTTTGTGGACGAGCCACATATTTGTAGTTACTGCCACTTATTGTG
1 ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
*
83600419 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTGGATTTTGTGGATGAACCACCACTTGT
66 AGTGCACAACATATTCACAAATTAAACAAACTGCCACTGGATTTTGTGGACGAACCACCACTTGT
* ** * *
83600484 TTTAAGATTTAATAAACTATCACTCTTCCTTTGTACAATGTC-CCTCCCCATGCAATGCACTATA
131 TTGAAGATTTAATAAACTATCACTCTTCCTCCGTACAATGTCTCAT-CCCATGCAATGCACTACA
* * * *
83600548 TCATGCTATGTAAGAAATCATCACTAGTAGTAGATATGTTACATGTACTCAATTTATCACTAACA
195 TCATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTACTCAATTTATCACTAACA
* * * *
83600613 CTTAATATGTTTTTCATGTACTTCGCA-CG-ATGATAACAATATTATCACTTTAAATTTAACAGT
260 CATAACATGTTTTTCATGTACTTCACAGGGCA-G-TAACAATATTATCACTTTAAATTTAACAGT
* ** * * *
83600676 TTCACTTTATCAGAAAACACCTAATTTTCACATATCATGCGATGTAATGAGGGCACTTAAGGCAT
323 TTCACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCAT
* * * *
83600741 TAAACCCAAATCTCATAATGCACCTAATATCAGGGACCTAACTGAGTAAAGATAAACTCTAAAAA
388 TAAACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAGCAAAGATAAACTCTAAAAA
* * * *
83600806 TAATTTAGAGAATTTACAGGGATTAAATTGAACACTTCATACTTTTACATAATATTAATAATTTC
453 CAATTTAGAGAATGTACAGGGATTAAACTGAACACTTCATACTTCTACATAATATTAATAATTTC
*
83600871 AGTCA
518 AATCA
83600876 AT
1 AT
83600878 CAATCAATCA
Statistics
Matches: 464, Mismatches: 57, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
520 1 0.00
521 4 0.01
522 459 0.99
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (522 bp):
ATTAAACAAACTACCACTGGGTTTATGGACAAGCCACATATTTACAGTTACTGCCACTTATTGTG
AGTGCACAACATATTCACAAATTAAACAAACTGCCACTGGATTTTGTGGACGAACCACCACTTGT
TTGAAGATTTAATAAACTATCACTCTTCCTCCGTACAATGTCTCATCCCATGCAATGCACTACAT
CATGCTATGTAACAAATAAACACTAGTAGTAGATATGTAACATGTACTCAATTTATCACTAACAC
ATAACATGTTTTTCATGTACTTCACAGGGCAGTAACAATATTATCACTTTAAATTTAACAGTTTC
ACTTTATCAGAAAACACATAACGTTCACATATCATGCAAAGTAATAAGGGCACTTAAGGCATTAA
ACACAAATCTCAAAATGCACCCAATATCAGGGACCTAACTGAGCAAAGATAAACTCTAAAAACAA
TTTAGAGAATGTACAGGGATTAAACTGAACACTTCATACTTCTACATAATATTAATAATTTCAAT
CA
Found at i:83601737 original size:21 final size:21
Alignment explanation
Indices: 83601712--83601755 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
83601702 TAGGGTCAAG
*
83601712 TATCGTTACC-AGATGTCAAAA
1 TATCGATACCTAG-TGTCAAAA
*
83601733 TATCGATACCTAGTTTCAAAA
1 TATCGATACCTAGTGTCAAAA
83601754 TA
1 TA
83601756 GTAAAATATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (21 bp):
TATCGATACCTAGTGTCAAAA
Found at i:83603589 original size:17 final size:17
Alignment explanation
Indices: 83603569--83603602 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
83603559 ACTCTAACTA
83603569 ATCAACAATGGTAACAT
1 ATCAACAATGGTAACAT
83603586 ATCAACAATGGTAACAT
1 ATCAACAATGGTAACAT
83603603 CTTAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (17 bp):
ATCAACAATGGTAACAT
Found at i:83611067 original size:24 final size:24
Alignment explanation
Indices: 83611038--83611084 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
83611028 ATGTAGTCTC
83611038 ACTATCTCAGAAATGTAGAGCTTA
1 ACTATCTCAGAAATGTAGAGCTTA
*
83611062 ACTATCTCGGAAATGTAGAGCTT
1 ACTATCTCAGAAATGTAGAGCTT
83611085 CGCCAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (24 bp):
ACTATCTCAGAAATGTAGAGCTTA
Found at i:83624444 original size:53 final size:53
Alignment explanation
Indices: 83624387--83624490 Score: 190
Period size: 53 Copynumber: 2.0 Consensus size: 53
83624377 TCAATAAATT
**
83624387 GTATGCTTCCACAAAATGTTTTTCTTTAAAAATGACGGTTTACGCAACAAAAG
1 GTATGCTTCCACAAAACATTTTTCTTTAAAAATGACGGTTTACGCAACAAAAG
83624440 GTATGCTTCCACAAAACATTTTTCTTTAAAAATGACGGTTTACGCAACAAA
1 GTATGCTTCCACAAAACATTTTTCTTTAAAAATGACGGTTTACGCAACAAA
83624491 GGTTTTTCTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (53 bp):
GTATGCTTCCACAAAACATTTTTCTTTAAAAATGACGGTTTACGCAACAAAAG
Found at i:83628105 original size:36 final size:36
Alignment explanation
Indices: 83628035--83628106 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
83628025 ATTTGAAGCA
* * * * *
83628035 ATAAATGACTTATTGGTCGATTAATAGCAACAAAAT
1 ATAAACGACTTATTAGTCGATAAAGAACAACAAAAT
*
83628071 ATAAACGACTTATTAGTCGATAAAGAACAGCAAAAT
1 ATAAACGACTTATTAGTCGATAAAGAACAACAAAAT
83628107 CAATTATTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.26
Consensus pattern (36 bp):
ATAAACGACTTATTAGTCGATAAAGAACAACAAAAT
Found at i:83629161 original size:24 final size:24
Alignment explanation
Indices: 83629134--83629193 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
83629124 GGGTTACAAA
*
83629134 AAGATGAAAGGT-AAAGAGTTAATG
1 AAGATGAAAGGTGAAAG-GTTAACG
83629158 AAGATGAAAGGTGAAAGGTTAACG
1 AAGATGAAAGGTGAAAGGTTAACG
*
83629182 AAGATAAAAGGT
1 AAGATGAAAGGT
83629194 TGAACATCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 29 0.88
25 4 0.12
ACGTcount: A:0.50, C:0.02, G:0.30, T:0.18
Consensus pattern (24 bp):
AAGATGAAAGGTGAAAGGTTAACG
Found at i:83630730 original size:46 final size:45
Alignment explanation
Indices: 83630670--83630935 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
83630660 TTTGACATGA
* * * * *
83630670 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
83630716 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
83630762 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
83630808 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
83630854 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
83630892 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
83630936 AGAGCACACT
Statistics
Matches: 196, Mismatches: 14, Indels: 20
0.85 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 148 0.76
47 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:83630899 original size:38 final size:38
Alignment explanation
Indices: 83630848--83630923 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
83630838 ACATTTTATA
83630848 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
83630886 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
83630924 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:83633088 original size:11 final size:11
Alignment explanation
Indices: 83633072--83633123 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
83633062 TATACTAAAT
83633072 AAATAATAATA
1 AAATAATAATA
*
83633083 AAATAAT-ATT
1 AAATAATAATA
* *
83633093 AAATATCTCATA
1 AAATA-ATAATA
*
83633105 AAATATTAATA
1 AAATAATAATA
83633116 AAATAATA
1 AAATAATA
83633124 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:83644955 original size:13 final size:13
Alignment explanation
Indices: 83644937--83644973 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
83644927 AGTCACACGC
83644937 CCGTGTGGGTTGG
1 CCGTGTGGGTTGG
83644950 CCGTGTGGGTTGG
1 CCGTGTGGGTTGG
83644963 CCGTGTGGGTT
1 CCGTGTGGGTT
83644974 TCACACGCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.32
Consensus pattern (13 bp):
CCGTGTGGGTTGG
Found at i:83656586 original size:29 final size:29
Alignment explanation
Indices: 83656553--83656711 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
83656543 GTGACGAGAT
*
83656553 TGGCACTAAGTGTGCGTGCTAGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83656582 TGGCACTAAGTGTGCGTGCTGGAAATTTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83656611 TGGCACTAAGTGTGCATGCTGG-AA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
83656638 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
83656667 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83656696 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
83656712 GGCTTAAATC
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
27 24 0.21
28 4 0.04
29 84 0.75
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83656658 original size:56 final size:58
Alignment explanation
Indices: 83656553--83656662 Score: 179
Period size: 56 Copynumber: 1.9 Consensus size: 58
83656543 GTGACGAGAT
* *
83656553 TGGCACTAAGTGTGCGTGCTAGAAATATATGGCACTAAGTGTGCGTGCTGGAAATTTA
1 TGGCACTAAGTGTGCATGCTAGAAATATATGGCACTAAGTGTGCATGCTGGAAATTTA
*
83656611 TGGCACTAAGTGTGCATGCT-GGAA-ATATGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTAGAAATATATGGCACTAAGTGTGCATGCTGGAAA
83656663 AATACGGCAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
56 27 0.55
57 3 0.06
58 19 0.39
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (58 bp):
TGGCACTAAGTGTGCATGCTAGAAATATATGGCACTAAGTGTGCATGCTGGAAATTTA
Found at i:83656698 original size:85 final size:85
Alignment explanation
Indices: 83656553--83656710 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
83656543 GTGACGAGAT
* * * * * **
83656553 TGGCACTAAGTGTGCGTGCTAGAAATATATGGCACTAAGTGTGCGTGCTGGAAATTTATGGCACT
1 TGGCACTAAGTGTGCATGCTAGAAAAATACGGCACTAAGTGTGCGAGCTCGAAAGGTATGGCACT
83656618 AAGTGTGCATGCTGGAAATA
66 AAGTGTGCATGCTGGAAATA
* ** *
83656638 TGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGAAGGGTATGGCACT
1 TGGCACTAAGTGTGCATGCTAGAAAAATACGGCACTAAGTGTGCGAGCTCGAAAGGTATGGCACT
*
83656703 ATGTGTGC
66 AAGTGTGC
83656711 GGGCTTAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 61 1.00
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (85 bp):
TGGCACTAAGTGTGCATGCTAGAAAAATACGGCACTAAGTGTGCGAGCTCGAAAGGTATGGCACT
AAGTGTGCATGCTGGAAATA
Found at i:83664405 original size:29 final size:29
Alignment explanation
Indices: 83664372--83664561 Score: 211
Period size: 29 Copynumber: 6.6 Consensus size: 29
83664362 GTGACGAGAT
83664372 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83664401 TGGCACTAAGTGTGCGTGCTGGAAATTTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
83664430 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
83664459 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
83664488 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
83664517 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
83664546 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83664562 AAAACGAGTA
Statistics
Matches: 138, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
28 2 0.01
29 136 0.99
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:83670809 original size:24 final size:24
Alignment explanation
Indices: 83670779--83670836 Score: 100
Period size: 24 Copynumber: 2.4 Consensus size: 24
83670769 AGTAGTATAC
83670779 GAAGATGAAAGGTG-AAGAGTTAAA
1 GAAGATGAAAGGTGAAAGA-TTAAA
83670803 GAAGATGAAAGGTGAAAGATTAAA
1 GAAGATGAAAGGTGAAAGATTAAA
83670827 GAAGATGAAA
1 GAAGATGAAA
83670837 ATTTGAACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 29 0.88
25 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.31, T:0.16
Consensus pattern (24 bp):
GAAGATGAAAGGTGAAAGATTAAA
Found at i:83672522 original size:39 final size:39
Alignment explanation
Indices: 83672422--83672631 Score: 330
Period size: 39 Copynumber: 5.4 Consensus size: 39
83672412 TTCGGGACAC
* * * * *
83672422 AGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATCACAACTCGCACAATTGCCTTCGGG-CTT
*
83672462 AACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTT
1 AGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTT
*
83672501 AGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTT
1 AGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTT
*
83672540 AGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTT
1 AGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTT
*
83672579 AGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTT
1 AGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTT
83672618 AGCCCGGATATCAC
1 AGCCCGGATATCAC
83672632 TCGAACATTC
Statistics
Matches: 158, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 128 0.81
40 30 0.19
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
AGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTT
Found at i:83677091 original size:30 final size:30
Alignment explanation
Indices: 83677055--83677116 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
83677045 CAATTGAGCT
83677055 TGGAAGCTTGGCCAAAAACCCTAGCTATGG
1 TGGAAGCTTGGCCAAAAACCCTAGCTATGG
83677085 TGGAAGCTTGGCCAAAAACCCTAGCTATGG
1 TGGAAGCTTGGCCAAAAACCCTAGCTATGG
83677115 TG
1 TG
83677117 ACTCTTCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (30 bp):
TGGAAGCTTGGCCAAAAACCCTAGCTATGG
Found at i:83682067 original size:33 final size:33
Alignment explanation
Indices: 83682019--83682092 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
83682009 CTGTGTGTGA
* *
83682019 CACACGGCCTTAGCCATTTTGGGCCATGTGGGC
1 CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
* *
83682052 CACACGGGCTAAGCCATTTTGGGTCGTGTGGGC
1 CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
*
83682085 CATACGGG
1 CACACGGG
83682093 TATATGGGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (33 bp):
CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
Found at i:83695261 original size:27 final size:27
Alignment explanation
Indices: 83695172--83695267 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
83695162 AATAACTGAT
* *
83695172 TTCGCACACTTAGTGCTCAGAAAT-TAA
1 TTCGCACACTTAGTGCTTAG-AATCAAA
* * *
83695199 TTCACACACATAGTGCTTA-AATCCAA
1 TTCGCACACTTAGTGCTTAGAATCAAA
* *
83695225 CTCGCACACTTAGTGCTTAGTATCAAA
1 TTCGCACACTTAGTGCTTAGAATCAAA
83695252 TTCGCACACTTAGTGC
1 TTCGCACACTTAGTGC
83695268 ATCCCTCAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
25 3 0.05
26 18 0.32
27 36 0.63
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
TTCGCACACTTAGTGCTTAGAATCAAA
Found at i:83695386 original size:2 final size:2
Alignment explanation
Indices: 83695381--83695421 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
83695371 TTAAACTCAC
*
83695381 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83695422 CATCTCAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:83701157 original size:19 final size:19
Alignment explanation
Indices: 83701115--83701157 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
83701105 TTGCTTATTG
*
83701115 TTGTTGTTTATTTCGACTC
1 TTGTTGTTTACTTCGACTC
* * *
83701134 ATGTTGTTTACTTGGACTT
1 TTGTTGTTTACTTCGACTC
83701153 TTGTT
1 TTGTT
83701158 TATGTTCTTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.58
Consensus pattern (19 bp):
TTGTTGTTTACTTCGACTC
Found at i:83701184 original size:3 final size:3
Alignment explanation
Indices: 83701178--83701229 Score: 86
Period size: 3 Copynumber: 16.7 Consensus size: 3
83701168 TATTATAATT
83701178 TTG TTG TATTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG T-T-G TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
83701225 TTG TT
1 TTG TT
83701230 TACTTGGACT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 43 0.91
4 2 0.04
5 2 0.04
ACGTcount: A:0.02, C:0.00, G:0.31, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:83701248 original size:3 final size:3
Alignment explanation
Indices: 83701186--83701229 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
83701176 TTTTGTTGTA
83701186 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
83701230 TACTTGGACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:83701265 original size:19 final size:19
Alignment explanation
Indices: 83701224--83701266 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
83701214 TGTTGTTGTT
* *
83701224 GTTGTTTACTTGGACTCAT
1 GTTGTTAACTTGGACTCAG
* *
83701243 GTTGTTAACTTGGGCTGAG
1 GTTGTTAACTTGGACTCAG
83701262 GTTGT
1 GTTGT
83701267 GTTGTTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.14, C:0.12, G:0.30, T:0.44
Consensus pattern (19 bp):
GTTGTTAACTTGGACTCAG
Found at i:83702346 original size:30 final size:30
Alignment explanation
Indices: 83702312--83702371 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
83702302 TATTTTATTA
83702312 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
83702342 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
83702372 CTTATTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:83703982 original size:16 final size:15
Alignment explanation
Indices: 83703963--83704001 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
83703953 ATTTTAAATT
83703963 TTATTATTCGTTTAAA
1 TTATTATTCGTTT-AA
83703979 TTATT-TATCGTTTAA
1 TTATTAT-TCGTTTAA
83703994 TTATTATT
1 TTATTATT
83704002 TAATATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (15 bp):
TTATTATTCGTTTAA
Found at i:83704003 original size:18 final size:16
Alignment explanation
Indices: 83703955--83703998 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
83703945 TTTTTATGAT
*
83703955 TTTAAATTTTATTATTCG
1 TTTAAATTAT-TTA-TCG
83703973 TTTAAATTATTTATCG
1 TTTAAATTATTTATCG
83703989 TTT-AATTATT
1 TTTAAATTATT
83703999 ATTTAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 6 0.24
17 3 0.12
18 9 0.36
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (16 bp):
TTTAAATTATTTATCG
Found at i:83704617 original size:30 final size:31
Alignment explanation
Indices: 83704582--83704645 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
83704572 ATAACTATGC
*
83704582 TTTAATGTAATTTTATAA-AT-AAATTTTTAT
1 TTTAATGTAATTATA-AATATAAAATTTTTAT
*
83704612 TTTAATTTAATTATAAATATAAAATTTTTAT
1 TTTAATGTAATTATAAATATAAAATTTTTAT
83704643 TTT
1 TTT
83704646 TATTTAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 2 0.07
30 15 0.50
31 13 0.43
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (31 bp):
TTTAATGTAATTATAAATATAAAATTTTTAT
Found at i:83704972 original size:18 final size:18
Alignment explanation
Indices: 83704949--83704993 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
83704939 ATTTTATTAT
83704949 TTTTAAATTAA-TTTAAAA
1 TTTTAAA-TAATTTTAAAA
83704967 TTTTAAA-AATTTTAAAA
1 TTTTAAATAATTTTAAAA
*
83704984 ATTTAAATAA
1 TTTTAAATAA
83704994 AATATTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 2 0.08
17 13 0.54
18 9 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTTAAATAATTTTAAAA
Found at i:83704977 original size:9 final size:9
Alignment explanation
Indices: 83704963--83704987 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
83704953 AAATTAATTT
83704963 AAAATTTTA
1 AAAATTTTA
83704972 AAAATTTTA
1 AAAATTTTA
83704981 AAAATTT
1 AAAATTT
83704988 AAATAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AAAATTTTA
Found at i:83714178 original size:42 final size:40
Alignment explanation
Indices: 83714131--83714210 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 40
83714121 TACAGGGGTT
* *
83714131 TTCACACGGCC-TGGCACACGCCTGTGTCCCTGGCCCGTGTCC
1 TTCACACGGCCATGACACAC-CC-GTGT-CCTAGCCCGTGTCC
83714173 TTCACACGGCCATGACACACCCGTGTCCTAGCCCGTGT
1 TTCACACGGCCATGACACACCCGTGTCCTAGCCCGTGT
83714211 GCAAAAACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 11 0.31
41 4 0.11
42 13 0.37
43 7 0.20
ACGTcount: A:0.14, C:0.41, G:0.24, T:0.21
Consensus pattern (40 bp):
TTCACACGGCCATGACACACCCGTGTCCTAGCCCGTGTCC
Found at i:83714334 original size:12 final size:12
Alignment explanation
Indices: 83714317--83714341 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83714307 CTGAGACACA
83714317 TGCCCGTGTGTT
1 TGCCCGTGTGTT
83714329 TGCCCGTGTGTT
1 TGCCCGTGTGTT
83714341 T
1 T
83714342 ACTACCATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.32, T:0.44
Consensus pattern (12 bp):
TGCCCGTGTGTT
Found at i:83715495 original size:26 final size:26
Alignment explanation
Indices: 83715466--83715573 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
83715456 TGGTACAAAT
83715466 TGATAATGTG-TTAGGTAAATGTTCCA
1 TGATAATG-GATTAGGTAAATGTTCCA
*
83715492 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
83715518 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
83715544 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
83715570 TGAT
1 TGAT
83715574 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 1 0.01
26 76 0.99
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:83718276 original size:47 final size:47
Alignment explanation
Indices: 83718223--83718441 Score: 193
Period size: 47 Copynumber: 4.7 Consensus size: 47
83718213 GGGGTGCTAC
* *
83718223 ATGCCATGTCCCAGACACGGTCTTACACTAGCTCAT-GTCTCATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-ATCGTCTCATGCCG
* * *
83718270 ATGCCATGTCCTAGACATGGTCTTACACT-GACTATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCGTCTCAT-GCCG
* * *
83718318 ATG-TATGTCCTAGACAT-ATCTTACACTAG-TACTCGTCTCGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCGTCTC-ATGCCG
* * * * * *
83718364 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGT-CTCAT-GCCG
83718412 ATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
83718442 CCACAATAAC
Statistics
Matches: 142, Mismatches: 19, Indels: 23
0.77 0.10 0.12
Matches are distributed among these distances:
45 2 0.01
46 37 0.26
47 76 0.54
48 25 0.18
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCTCATGCCG
Found at i:83718366 original size:94 final size:92
Alignment explanation
Indices: 83718227--83718441 Score: 254
Period size: 94 Copynumber: 2.3 Consensus size: 92
83718217 TGCTACATGC
** * *
83718227 CATGTCCCAGACACGGTCTTACACTAGCTCATGTCTCATGTCGATGCCATGTCCTAGACATGGTC
1 CATGTCCCAGACA-TATCTTACACTAGCTCA-GTCTCATGCCGATGCCATGTCCCAGACATGGTC
*
83718292 TTACACTGACTATCAT-CTCGTAGCCGATG
64 TTACACTGACTATCATAAT-GTAGCCGATG
* *
83718321 TATGTCCTAGACATATCTTACACTAGTACTC-GTCTCGATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATATCTTACACTAG--CTCAGTCTC-ATGCCGATGCCATGTCCCAGACATGGT
* * * *
83718385 CTTACACTGGCTCTCATAATGTGGCTGATG
63 CTTACACTGACTATCATAATGTAGCCGATG
*
83718415 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATATCTTACACTAGC
83718442 CCACAATAAC
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
92 1 0.01
93 16 0.16
94 82 0.80
95 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
CATGTCCCAGACATATCTTACACTAGCTCAGTCTCATGCCGATGCCATGTCCCAGACATGGTCTT
ACACTGACTATCATAATGTAGCCGATG
Found at i:83720544 original size:3 final size:3
Alignment explanation
Indices: 83720538--83720571 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
83720528 TTCAAGTGTA
*
83720538 TAT TAT TAT TTT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
83720572 CAATATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:83722134 original size:3 final size:3
Alignment explanation
Indices: 83722120--83722160 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
83722110 TGGGTTGAGG
*
83722120 GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA GAA GAAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-AA GAA G
83722161 GGGGAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:83725637 original size:30 final size:30
Alignment explanation
Indices: 83725601--83725689 Score: 115
Period size: 30 Copynumber: 3.0 Consensus size: 30
83725591 CTTGATCAAC
***
83725601 AGATAGCCACAAAGTTTTCCATACATCATT
1 AGATAGCCACAAAGGCATCCATACATCATT
*
83725631 AGATAGCCATAAAGGCATCCATACATCATT
1 AGATAGCCACAAAGGCATCCATACATCATT
* * *
83725661 AAATAACCACAAAGGCATCCAAACATCAT
1 AGATAGCCACAAAGGCATCCATACATCAT
83725690 ACGCTAAACT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (30 bp):
AGATAGCCACAAAGGCATCCATACATCATT
Found at i:83725806 original size:29 final size:29
Alignment explanation
Indices: 83725773--83725843 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 29
83725763 CAAAAATTTC
** *
83725773 CACATATAACATATTCTGCCACTAGGGCT
1 CACATATAACATATTCCACCACAAGGGCT
*
83725802 CACATATAGCATATTCCACCACAAGGGCT
1 CACATATAACATATTCCACCACAAGGGCT
83725831 CACATATAACATA
1 CACATATAACATA
83725844 GAATAGCCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.37, C:0.28, G:0.11, T:0.24
Consensus pattern (29 bp):
CACATATAACATATTCCACCACAAGGGCT
Found at i:83726122 original size:56 final size:54
Alignment explanation
Indices: 83726052--83726157 Score: 142
Period size: 54 Copynumber: 1.9 Consensus size: 54
83726042 GGTTCTCTTA
*
83726052 TCCCTATATAATGCCATAGCCACCATAACTAGGTCTTAC-TCTATATGGTCTTCACT
1 TCCCCATATAATGCCATAGCC-CCA-AACTAGGTCTTACAT-TATATGGTCTTCACT
* * *
83726108 TCCCCATATGATGCCATAGTCCTAAACTAGGTCTTACATTATATGGTCTT
1 TCCCCATATAATGCCATAGCCCCAAACTAGGTCTTACATTATATGGTCTT
83726158 TTTGCCATGA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
54 24 0.53
55 3 0.07
56 18 0.40
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.35
Consensus pattern (54 bp):
TCCCCATATAATGCCATAGCCCCAAACTAGGTCTTACATTATATGGTCTTCACT
Found at i:83726279 original size:15 final size:16
Alignment explanation
Indices: 83726259--83726294 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
83726249 ACTTATACAC
*
83726259 AGACTT-CTCATGTAG
1 AGACTTACTCATGCAG
83726274 AGACTTACTCATGCAG
1 AGACTTACTCATGCAG
83726290 AGACT
1 AGACT
83726295 CCATCATACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (16 bp):
AGACTTACTCATGCAG
Found at i:83728413 original size:16 final size:17
Alignment explanation
Indices: 83728382--83728415 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
83728372 AGATATAATG
83728382 TTAGAAACTAAAAAAAT
1 TTAGAAACTAAAAAAAT
83728399 TTAGAAACTAAAAAAAT
1 TTAGAAACTAAAAAAAT
83728416 AAATTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (17 bp):
TTAGAAACTAAAAAAAT
Found at i:83728514 original size:33 final size:31
Alignment explanation
Indices: 83728462--83728526 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 31
83728452 ATTATACATG
*
83728462 AAATATATATTTTAAAATTTTAAATATAATGAT
1 AAATATATATTTGAAAA-TTT-AATATAATGAT
83728495 AAATAT-TATTTGAATAATTTAATATAATGAT
1 AAATATATATTTGAA-AATTTAATATAATGAT
83728526 A
1 A
83728527 TTTAATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 12 0.40
32 10 0.33
33 8 0.27
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.45
Consensus pattern (31 bp):
AAATATATATTTGAAAATTTAATATAATGAT
Found at i:83730879 original size:9 final size:9
Alignment explanation
Indices: 83730779--83731058 Score: 76
Period size: 9 Copynumber: 29.6 Consensus size: 9
83730769 AAATCTAAAA
83730779 AAAAACTTAT
1 AAAAA-TTAT
*
83730789 AAAAAATCAT
1 -AAAAATTAT
*
83730799 AAAAAGTAT
1 AAAAATTAT
*
83730808 CAAAA-TAT
1 AAAAATTAT
83730816 AAAAATTATT
1 AAAAATTA-T
* *
83730826 ATATATTA-
1 AAAAATTAT
83730834 AAAAA-TATT
1 AAAAATTA-T
*
83730843 AAAAAATAT
1 AAAAATTAT
*
83730852 GAAAATTGAT
1 AAAAATT-AT
*
83730862 ATGAAATTAT
1 A-AAAATTAT
83730872 AAAAATTAT
1 AAAAATTAT
83730881 AAAACCA-TAT
1 AAAA--ATTAT
83730891 -AAAATCTA-
1 AAAAAT-TAT
83730899 ATAAAATCTA-
1 A-AAAAT-TAT
83730909 ATAAAATCTA-
1 A-AAAAT-TAT
*
83730919 ATAAATTAT
1 AAAAATTAT
*
83730928 AAAAAATAT
1 AAAAATTAT
* * *
83730937 AGAACTAAT
1 AAAAATTAT
*
83730946 AAAACATTTTT
1 AAAA-A-TTAT
83730957 AAAAATTTTAT
1 AAAAA--TTAT
*
83730968 AAAAA-CAT
1 AAAAATTAT
*
83730976 ACTAAAATTCT
1 A--AAAATTAT
83730987 ATAAAATTCAT
1 A-AAAATT-AT
*
83730998 AAAAAATAT
1 AAAAATTAT
83731007 AAAAA-TAT
1 AAAAATTAT
* *
83731015 TAAAAGTAT
1 AAAAATTAT
*
83731024 TAAAATTGAT
1 AAAAATT-AT
**
83731034 ATAAGTTTAT
1 A-AAAATTAT
83731044 AAAAATTATT
1 AAAAATTA-T
83731054 AAAAA
1 AAAAA
83731059 GTCATTATAA
Statistics
Matches: 206, Mismatches: 38, Indels: 51
0.70 0.13 0.17
Matches are distributed among these distances:
7 3 0.01
8 22 0.11
9 80 0.39
10 67 0.33
11 34 0.17
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:83730902 original size:10 final size:10
Alignment explanation
Indices: 83730889--83730923 Score: 70
Period size: 10 Copynumber: 3.5 Consensus size: 10
83730879 ATAAAACCAT
83730889 ATAAAATCTA
1 ATAAAATCTA
83730899 ATAAAATCTA
1 ATAAAATCTA
83730909 ATAAAATCTA
1 ATAAAATCTA
83730919 ATAAA
1 ATAAA
83730924 TTATAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.29
Consensus pattern (10 bp):
ATAAAATCTA
Found at i:83730904 original size:20 final size:20
Alignment explanation
Indices: 83730879--83730923 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
83730869 TATAAAAATT
83730879 ATAAAACC-ATATAAAATCTA
1 ATAAAACCTA-ATAAAATCTA
*
83730899 ATAAAATCTAATAAAATCTA
1 ATAAAACCTAATAAAATCTA
83730919 ATAAA
1 ATAAA
83730924 TTATAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.27
Consensus pattern (20 bp):
ATAAAACCTAATAAAATCTA
Found at i:83731496 original size:9 final size:9
Alignment explanation
Indices: 83731479--83731706 Score: 89
Period size: 9 Copynumber: 24.6 Consensus size: 9
83731469 TTTATGATTT
83731479 TTTTATATAA
1 TTTT-TATAA
83731489 TTTTTATAA
1 TTTTTATAA
*
83731498 GTTTATATCAA
1 -TTTTTAT-AA
* *
83731509 TTTTAATAT
1 TTTTTATAA
*
83731518 TTTTTATTAT
1 TTTTTA-TAA
*
83731528 TTTTTAAGAA
1 TTTTT-ATAA
* *
83731538 TTCTAATACA
1 TTTTTATA-A
83731548 TTTTT-TAA
1 TTTTTATAA
*
83731556 TTTTGACT-A
1 TTTTTA-TAA
*
83731565 TTTTAAATAA
1 TTTT-TATAA
83731575 TTTTTATTAA
1 TTTTTA-TAA
*
83731585 -ATTTATAA
1 TTTTTATAA
*
83731593 TTTATTA-GA
1 TTT-TTATAA
83731602 TTTTTAT-A
1 TTTTTATAA
83731610 TTTTTATAA
1 TTTTTATAA
*
83731619 TATTTATAA
1 TTTTTATAA
83731628 GTTTTTTTTATAA
1 ----TTTTTATAA
*
83731641 TTTTGATAA
1 TTTTTATAA
*
83731650 GTTTATATTAA
1 -TTTTTA-TAA
*
83731661 TTTTAAT-A
1 TTTTTATAA
83731669 -TTTTATAA
1 TTTTTATAA
*
83731677 TATTTA-ATA
1 TTTTTATA-A
83731686 TTTTTAT--
1 TTTTTATAA
83731693 TTTTTATAA
1 TTTTTATAA
83731702 TTTTT
1 TTTTT
83731707 TTCTTATTTT
Statistics
Matches: 164, Mismatches: 28, Indels: 53
0.67 0.11 0.22
Matches are distributed among these distances:
7 12 0.07
8 22 0.13
9 64 0.39
10 52 0.32
11 6 0.04
13 8 0.05
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:83731638 original size:22 final size:22
Alignment explanation
Indices: 83731610--83731653 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
83731600 GATTTTTATA
83731610 TTTTTATAATATTT-ATAAGTTT
1 TTTTTATAAT-TTTGATAAGTTT
83731632 TTTTTATAATTTTGATAAGTTT
1 TTTTTATAATTTTGATAAGTTT
83731654 ATATTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.64
Consensus pattern (22 bp):
TTTTTATAATTTTGATAAGTTT
Found at i:83732161 original size:9 final size:9
Alignment explanation
Indices: 83732147--83732177 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
83732137 GTAAAATTAT
83732147 ATTTTAAAA
1 ATTTTAAAA
83732156 ATTTTAAAA
1 ATTTTAAAA
83732165 ATTTTAAAA
1 ATTTTAAAA
83732174 ATTT
1 ATTT
83732178 AATTTTGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:83734925 original size:22 final size:22
Alignment explanation
Indices: 83734900--83734942 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
83734890 ATTGATGCCC
83734900 CAAAAGAACTCCATTGCAGCCA
1 CAAAAGAACTCCATTGCAGCCA
83734922 CAAAAGAACTCCATTGCAGCC
1 CAAAAGAACTCCATTGCAGCC
83734943 TTTCACTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.33, G:0.14, T:0.14
Consensus pattern (22 bp):
CAAAAGAACTCCATTGCAGCCA
Found at i:83741016 original size:12 final size:13
Alignment explanation
Indices: 83740993--83741021 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
83740983 CAAATGAATT
83740993 ATTTCTCATTTTC
1 ATTTCTCATTTTC
83741006 ATTTC-CATTTTC
1 ATTTCTCATTTTC
83741018 ATTT
1 ATTT
83741022 TTAAGAGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTCTCATTTTC
Found at i:83749671 original size:33 final size:33
Alignment explanation
Indices: 83749634--83749717 Score: 109
Period size: 31 Copynumber: 2.6 Consensus size: 33
83749624 CCATGTTAAT
* * *
83749634 TGTCCTAGTGGACTATCTTTTTTCTGTGTTTAC
1 TGTCCTAGTAGACTATCTTTCTTCTGTGATTAC
*
83749667 TGTCCTTGTAGACTATC--TCTTCTGTGATTAC
1 TGTCCTAGTAGACTATCTTTCTTCTGTGATTAC
*
83749698 TGTCCTAGTAGACTGTCTTT
1 TGTCCTAGTAGACTATCTTT
83749718 GTCGATGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
31 27 0.63
33 16 0.37
ACGTcount: A:0.14, C:0.20, G:0.18, T:0.48
Consensus pattern (33 bp):
TGTCCTAGTAGACTATCTTTCTTCTGTGATTAC
Found at i:83760631 original size:46 final size:46
Alignment explanation
Indices: 83760564--83760656 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
83760554 CATCAAATAA
*
83760564 ATATTTCCCACCTCGATCAGATTGAAGTGCCTTTATGGGTAAACTT
1 ATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACTT
83760610 ATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACTT
1 ATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACTT
83760656 A
1 A
83760657 GTTGTTTCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (46 bp):
ATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACTT
Found at i:83763133 original size:16 final size:17
Alignment explanation
Indices: 83763101--83763133 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
83763091 GTTATTCGAA
83763101 CTTACTTAGCATTTTATG
1 CTTACTTAG-ATTTTATG
83763119 CTTACTTAG-TTTTAT
1 CTTACTTAGATTTTAT
83763134 TTCCCTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.15, G:0.09, T:0.55
Consensus pattern (17 bp):
CTTACTTAGATTTTATG
Found at i:83764754 original size:42 final size:42
Alignment explanation
Indices: 83764703--83764814 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 42
83764693 TGAGATTACG
*
83764703 TGTAAGACCATATCTGGGATATGGCATCGACATAAGATTTCC
1 TGTAAGACCATATCTGGGATATGGCATCGACATAAGATTTCA
* * * * *
83764745 TTTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGACATAAGATTTCA
* *
83764788 TGTAAGACTATATCTAGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
83764815 TGATATGGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGACATAAGATTTCA
Found at i:83764785 original size:43 final size:42
Alignment explanation
Indices: 83764693--83764821 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 42
83764683 TAGGGTTCGT
* * *
83764693 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGACA
1 TGAGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * * * *
83764735 TAAGATTTCCTTTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTTCATGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
83764778 TGAGATTTCATGTAAGACTATATCTAGGATATGGCATTGATA
1 TGAGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
83764820 TG
1 TG
83764822 GTACTATGTG
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 37 0.52
43 34 0.48
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (42 bp):
TGAGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:83765559 original size:15 final size:15
Alignment explanation
Indices: 83765531--83765564 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
83765521 GTAATTGATG
*
83765531 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
83765546 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
83765561 TGTG
1 TGTG
83765565 TGCATATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:83771878 original size:26 final size:26
Alignment explanation
Indices: 83771849--83771956 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
83771839 TGGTACAAAT
*
83771849 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
83771875 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
83771901 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
83771927 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
83771953 TGAT
1 TGAT
83771957 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:83773585 original size:27 final size:26
Alignment explanation
Indices: 83773545--83773685 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 26
83773535 AGGAAGCGTC
83773545 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
83773572 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
83773599 CTGGTGGCTATGCCACTATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
83773626 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
* *
83773653 CTGGTGGCTTTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACATTATCTG-AT
83773680 CTGGTG
1 CTGGTG
83773686 ACTTCATCAC
Statistics
Matches: 101, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
26 10 0.10
27 89 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:83773627 original size:54 final size:53
Alignment explanation
Indices: 83773545--83773685 Score: 237
Period size: 54 Copynumber: 2.6 Consensus size: 53
83773535 AGGAAGCGTC
83773545 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
83773599 CTGGTGGCTATGCCACTATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
83773653 CTGGTGGCTTTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
83773686 ACTTCATCAC
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 7 0.08
54 76 0.92
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:83773696 original size:27 final size:26
Alignment explanation
Indices: 83773557--83773700 Score: 78
Period size: 27 Copynumber: 5.3 Consensus size: 26
83773547 GGTGGCTATG
* * *
83773557 CCACAATTATCTGATCTGGTGGC-TCTG
1 CCACAA-TATCTGTTCTGGTGACTTC-A
* *
83773584 CCACATATATCTGTTCTGGTGGCTAT-G
1 CCACA-ATATCTGTTCTGGTGACT-TCA
* * * *
83773611 CCACTATTATCTGATCTGGTGGC-TCTG
1 CCAC-AATATCTGTTCTGGTGACTTC-A
* **
83773638 CCACATATATCTGTTCTGGTGGCTTTG
1 CCACA-ATATCTGTTCTGGTGACTTCA
83773665 CCACAATATCTGTATCTGGTGACTTCA
1 CCACAATATCTGT-TCTGGTGACTTCA
*
83773692 TCACAATAT
1 CCACAATAT
83773701 TTGGTAGCCT
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.01
26 9 0.09
27 84 0.86
28 3 0.03
29 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
CCACAATATCTGTTCTGGTGACTTCA
Found at i:83775207 original size:42 final size:42
Alignment explanation
Indices: 83775098--83775208 Score: 100
Period size: 42 Copynumber: 2.6 Consensus size: 42
83775088 TGAGATTACG
* * * * ** *
83775098 TGTAGGACCATATTTGAGATATGGCATTAGTATTAGATTTCG
1 TGTAAGACCATATTTGGGATATGGCATGAGTATGAGATCCCA
* **
83775140 TGTAAGATCATAGCTGGGCAT-TGGCATCGA-TATGAGATCCCA
1 TGTAAGACCATATTTGGG-ATATGGCAT-GAGTATGAGATCCCA
83775182 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATTTGGGATATGGCAT
83775209 TGGTATGGTA
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
41 2 0.04
42 48 0.91
43 3 0.06
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATTTGGGATATGGCATGAGTATGAGATCCCA
Found at i:83775939 original size:15 final size:15
Alignment explanation
Indices: 83775911--83775944 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
83775901 GTAATTGATG
*
83775911 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
83775926 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
83775941 TGTG
1 TGTG
83775945 TGTATAAGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:83786145 original size:233 final size:232
Alignment explanation
Indices: 83785711--83786153 Score: 524
Period size: 233 Copynumber: 1.9 Consensus size: 232
83785701 TCTCTTTTCA
* *
83785711 TATTACAATTCGATCACGTAATACCGCTTAGTATTAGTTAAACATTAGACAACTAAATAAGCAAT
1 TATTACAATTCGACCACGTAATACCGCTTAGTATTAGTTAAACATTAGACAACTAAATAAGCAAC
** **
83785776 ATTTGCTTCCATTTTGCTTTGCGTGCAAAAACCATTTGAGAATAATAATACAAAGTACATTAATT
66 ATTTGCTTCCATTTTGCTTTGCAAGCAAAAACCACATGAGAATAATAATACAAAGTA-ATTAATT
** * * * * **
83785841 GTAATTAATGAATTTTTATTAATCAATCTGTTCAAAAAAATTACAAGTTTACAAACGAATATATT
130 GTAATTAATGAATTTTTAGCAATCAATCTGTTAAAAAAAATTAAAAGTGTACAAACGAAAATACC
83785906 ACACTTAAG-GCACCAAATCGAAAAAAATTTTCTTTCTG
195 ACACTT-AGTGCACCAAATCGAAAAAAATTTTCTTTCTG
* * *
83785944 TATTACAA-TCTGACCACGTAATACCAGC-TAGTATTAGTTAAACATTAGACAAC-CAGTGAGCA
1 TATTACAATTC-GACCACGTAATACC-GCTTAGTATTAGTTAAACATTAGACAACTAAATAAGCA
* * * * *
83786006 ACATTTGCTTCCATTTTTCTTTGCAAGCAAAAACCACATGTGGA-CATTATACAAAGT-ATTAA-
64 ACATTTGCTTCCATTTTGCTTTGCAAGCAAAAACCACATGAGAATAATAATACAAAGTAATTAAT
* *
83786068 TGTAATTAATGAATAATTTTAGCAATCAAAT-TGTTAAAAAAAAATTAAAAGTGTACATTGATGA
129 TGTAATTAATGAAT--TTTTAGCAATC-AATCTGTT-AAAAAAAATTAAAAGTGTACA--AACGA
83786132 AAATACCACACTTAGTGCACCA
188 AAATACCACACTTAGTGCACCA
83786154 GATCCAACAT
Statistics
Matches: 177, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
228 14 0.08
229 5 0.03
230 13 0.07
231 32 0.18
232 46 0.26
233 65 0.37
234 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (232 bp):
TATTACAATTCGACCACGTAATACCGCTTAGTATTAGTTAAACATTAGACAACTAAATAAGCAAC
ATTTGCTTCCATTTTGCTTTGCAAGCAAAAACCACATGAGAATAATAATACAAAGTAATTAATTG
TAATTAATGAATTTTTAGCAATCAATCTGTTAAAAAAAATTAAAAGTGTACAAACGAAAATACCA
CACTTAGTGCACCAAATCGAAAAAAATTTTCTTTCTG
Found at i:83787501 original size:94 final size:94
Alignment explanation
Indices: 83787329--83787746 Score: 364
Period size: 94 Copynumber: 4.4 Consensus size: 94
83787319 CACCTCAAAA
* ** * ** * *
83787329 GAGGTTACAAGTGTAAGACCATAACTCGGCTATGG-ACACATGAAGAGTTTATTAGGATAGTAAA
1 GAGGTTACATGTGTAAGACCATATTTCAGCTATGGCA-ACATGGGGAGTTTGTCAGGATAGTAAA
** * * **
83787393 CGT-GAGGTAATCTATTAGGACATTAAACAT
65 AATAG-GGTAGTCCACCAGGACATTAAACAT
* * *
83787423 GGGGCTACATGTGTAAGACCATATTTCAGCTATGGCAACATGGGGAGTTTGTCAGGATAATAAAC
1 GAGGTTACATGTGTAAGACCATATTTCAGCTATGGCAACATGGGGAGTTTGTCAGGATAGTAAA-
* * * *
83787488 AAT-GGATAGTCTATCAGGACCTTAAACAT
65 AATAGGGTAGTCCACCAGGACATTAAACAT
* * *
83787517 GAGGTTACATGTGTAAGACCATATCTT-AGTTATGGCAACATGGAGAGTTCGAT-AGGATAGTAA
1 GAGGTTACATGTGTAAGACCATAT-TTCAGCTATGGCAACATGGGGAGTTTG-TCAGGATAGTAA
* *
83787580 ATATGGGGTAGTCCACCAGGACATTAAACAT
64 AAATAGGGTAGTCCACCAGGACATTAAACAT
* * * * * * * *
83787611 GTGGTTACATGTGTAAGACTATAGCTTGA-CTATGACAACATGGGGAGTCTATC-GAGACAGTAA
1 GAGGTTACATGTGTAAGACCATA-TTTCAGCTATGGCAACATGGGGAGTTTGTCAG-GATAGTAA
* * *
83787674 AAATAGGGTAGTCCACCAAGACATTAAATAA
64 AAATAGGGTAGTCCACCAGGACATTAAACAT
** *
83787705 GAGGTTACATGTGTAAGACCATAGCTCAGCTATGGCAGCATG
1 GAGGTTACATGTGTAAGACCATATTTCAGCTATGGCAACATG
83787747 TGATAACCGC
Statistics
Matches: 264, Mismatches: 50, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
93 6 0.02
94 251 0.95
95 7 0.03
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.26
Consensus pattern (94 bp):
GAGGTTACATGTGTAAGACCATATTTCAGCTATGGCAACATGGGGAGTTTGTCAGGATAGTAAAA
ATAGGGTAGTCCACCAGGACATTAAACAT
Found at i:83787652 original size:188 final size:188
Alignment explanation
Indices: 83787327--83787746 Score: 463
Period size: 188 Copynumber: 2.2 Consensus size: 188
83787317 GACACCTCAA
* * *
83787327 AAGAGGTTACAAGTGTAAGACCATAACTCGGCTATGG-ACACATGAAGAGTTTATTAGGATAGTA
1 AAGAGGTTACATGTGTAAGACCATAACTCAGCTATGGCA-ACATGAAGAGTTGATTAGGATAGTA
* * ** *
83787391 AACGTGAGGTAATCTATTAGGACATTAAACATGGGGCTACATGTGTAAGACCATATTTCAGCTAT
65 AACATGAGGTAATCCACCAGGACATTAAACATGGGGCTACATGTGTAAGACCATACTTCAGCTAT
* * * * * * * *
83787456 GGCAACATGGGGAGTTTGTC-AGGATAATAAACAAT-GGATAGTCTATCAGGACCTTAAAC
130 GACAACATGGGGAGTCTATCGA-GACAATAAA-AATAGGATAGTCCACCAAGACATTAAAC
* * * * *
83787515 ATGAGGTTACATGTGTAAGACCATATCTTAGTTATGGCAACATGGAGAGTTCGA-TAGGATAGTA
1 AAGAGGTTACATGTGTAAGACCATAACTCAGCTATGGCAACATGAAGAGTT-GATTAGGATAGTA
* * * * * * *
83787579 AATATGGGGTAGTCCACCAGGACATTAAACATGTGGTTACATGTGTAAGACTATAGCTTGA-CTA
65 AACATGAGGTAATCCACCAGGACATTAAACATGGGGCTACATGTGTAAGACCATA-CTTCAGCTA
* * *
83787643 TGACAACATGGGGAGTCTATCGAGACAGTAAAAATAGGGTAGTCCACCAAGACATTAAAT
129 TGACAACATGGGGAGTCTATCGAGACAATAAAAATAGGATAGTCCACCAAGACATTAAAC
* *
83787703 AAGAGGTTACATGTGTAAGACCATAGCTCAGCTATGGCAGCATG
1 AAGAGGTTACATGTGTAAGACCATAACTCAGCTATGGCAACATG
83787747 TGATAACCGC
Statistics
Matches: 191, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
187 3 0.02
188 182 0.95
189 6 0.03
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.26
Consensus pattern (188 bp):
AAGAGGTTACATGTGTAAGACCATAACTCAGCTATGGCAACATGAAGAGTTGATTAGGATAGTAA
ACATGAGGTAATCCACCAGGACATTAAACATGGGGCTACATGTGTAAGACCATACTTCAGCTATG
ACAACATGGGGAGTCTATCGAGACAATAAAAATAGGATAGTCCACCAAGACATTAAAC
Found at i:83792642 original size:80 final size:79
Alignment explanation
Indices: 83792540--83792855 Score: 359
Period size: 80 Copynumber: 4.0 Consensus size: 79
83792530 GAAATTAAAG
* ** * * * *
83792540 GTAAAT-AATATCCGTTTCGAGATTGATTCCTGCCGTACAACAAGTTTACTCCAAATTTTGATTT
1 GTAAATCAA-ATCTGTTTCGAGATTGATTCCTGTTGTTCAACGATTTTATTCCAAATTTTGATTT
83792604 TATTTCCAAAAACGA
65 TATTTCCAAAAACGA
*
83792619 GTAAATTCAAATTTGTTTCGAGATTGATTCCTGTTGTTCAACGATTTTATTCCAAATTTTGATTT
1 GTAAA-TCAAATCTGTTTCGAGATTGATTCCTGTTGTTCAACGATTTTATTCCAAATTTTGATTT
*
83792684 TATTTCCAAAAATGA
65 TATTTCCAAAAACGA
* * * * * *
83792699 GTAAAACAAAATCTGTTAC-AGGATTGATTTCTGATGTTCAATGATTTTATTCCGAATTTTGATT
1 GTAAATC-AAATCTGTTTCGA-GATTGATTCCTGTTGTTCAACGATTTTATTCCAAATTTTGATT
*
83792763 TTATTTCCAAAAACAA
64 TTATTTCCAAAAACGA
* * * * * *
83792779 GTAAAATAAAATCCGTTTTGGGATTGACTCCTATTGTTCAACGATTTTATTCCAAATTTTGATTT
1 GT-AAATCAAATCTGTTTCGAGATTGATTCCTGTTGTTCAACGATTTTATTCCAAATTTTGATTT
83792844 T-TTTGCCAAAAA
65 TATTT-CCAAAAA
83792856 TGAAAACTTA
Statistics
Matches: 200, Mismatches: 30, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
79 10 0.05
80 185 0.93
81 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.41
Consensus pattern (79 bp):
GTAAATCAAATCTGTTTCGAGATTGATTCCTGTTGTTCAACGATTTTATTCCAAATTTTGATTTT
ATTTCCAAAAACGA
Found at i:83799461 original size:30 final size:31
Alignment explanation
Indices: 83799427--83799490 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
83799417 ACTTAACAAG
* *
83799427 CAAATATATCTAAAATAAT-AACAAAATTAA
1 CAAATACATCTAAAATAATAAAAAAAATTAA
* * *
83799457 CAAATGCCTTTAAAATAATAAAAAAAATTAA
1 CAAATACATCTAAAATAATAAAAAAAATTAA
83799488 CAA
1 CAA
83799491 TAAAATAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 15 0.54
31 13 0.46
ACGTcount: A:0.62, C:0.11, G:0.02, T:0.25
Consensus pattern (31 bp):
CAAATACATCTAAAATAATAAAAAAAATTAA
Found at i:83799545 original size:22 final size:22
Alignment explanation
Indices: 83799520--83799565 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
83799510 TATCCAAACA
*
83799520 ATAACAATAAAATAATAGTAAC
1 ATAACAATAAAATAATAGCAAC
* * *
83799542 ATAATAGTAAAATAGTAGCAAC
1 ATAACAATAAAATAATAGCAAC
83799564 AT
1 AT
83799566 GGGGGAGAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.09, G:0.09, T:0.24
Consensus pattern (22 bp):
ATAACAATAAAATAATAGCAAC
Found at i:83807649 original size:8 final size:8
Alignment explanation
Indices: 83807636--83807666 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
83807626 CTAGATCGGC
83807636 AAAAGCCG
1 AAAAGCCG
83807644 AAAAGCCG
1 AAAAGCCG
*
83807652 AAATGCCG
1 AAAAGCCG
83807660 AAAAGCC
1 AAAAGCC
83807667 AGTATTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:83807946 original size:28 final size:28
Alignment explanation
Indices: 83807914--83807978 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
83807904 ATTTACTAGA
*
83807914 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
83807942 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
83807970 ATACCCCTA
1 ATACCCCTA
83807979 GAGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Done.