Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 280 of 328
Found at i:83808661 original size:19 final size:19
Alignment explanation
Indices: 83808637--83808675 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
83808627 TTTTAATTAT
* *
83808637 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
83808656 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
83808675 T
1 T
83808676 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:83811332 original size:13 final size:12
Alignment explanation
Indices: 83811305--83811343 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
83811295 AAACAACAAT
83811305 AAAATAACACCA
1 AAAATAACACCA
* *
83811317 AAAATAGCACCC
1 AAAATAACACCA
*
83811329 AAAACAACACCA
1 AAAATAACACCA
83811341 AAA
1 AAA
83811344 CGGCCAAAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.64, C:0.28, G:0.03, T:0.05
Consensus pattern (12 bp):
AAAATAACACCA
Found at i:83816177 original size:16 final size:17
Alignment explanation
Indices: 83816146--83816177 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
83816136 CCAAGCTATA
83816146 ATCTTGGTGAATTTTGC
1 ATCTTGGTGAATTTTGC
83816163 ATCTTGGTG-ATTTTG
1 ATCTTGGTGAATTTTG
83816178 TGAAAAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.16, C:0.09, G:0.25, T:0.50
Consensus pattern (17 bp):
ATCTTGGTGAATTTTGC
Found at i:83819645 original size:34 final size:34
Alignment explanation
Indices: 83819598--83819674 Score: 93
Period size: 34 Copynumber: 2.2 Consensus size: 34
83819588 GTGATGTTGT
*
83819598 TATATATAATATATATGCCTCTATGG-TTCTATTA
1 TATATATAATATATATGCCTCTAGGGATT-TATTA
* **
83819632 TATATATACTATATATGTGTCTAGGGATTTATTA
1 TATATATAATATATATGCCTCTAGGGATTTATTA
83819666 TAATATATA
1 T-ATATATA
83819675 TGCGTTTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 28 0.76
35 9 0.24
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.47
Consensus pattern (34 bp):
TATATATAATATATATGCCTCTAGGGATTTATTA
Found at i:83823008 original size:20 final size:21
Alignment explanation
Indices: 83822983--83823027 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
83822973 TTTATGATTG
*
83822983 TTTAATTAGATA-TATATTAT
1 TTTAATGAGATATTATATTAT
*
83823003 TTTAATGAGATATTTTATTAT
1 TTTAATGAGATATTATATTAT
83823024 TTTA
1 TTTA
83823028 TTATTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
TTTAATGAGATATTATATTAT
Found at i:83823033 original size:11 final size:11
Alignment explanation
Indices: 83823017--83823044 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
83823007 ATGAGATATT
83823017 TTATTATTTTA
1 TTATTATTTTA
83823028 TTATTATTTTA
1 TTATTATTTTA
83823039 TTATTA
1 TTATTA
83823045 ATTATTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:83825075 original size:46 final size:46
Alignment explanation
Indices: 83825023--83825204 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
83825013 AGTGTGCTCT
*
83825023 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
83825069 CTGATATGAAATGTGTAAGACCATGGTTGGAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
83825115 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
83825161 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
83825205 TCATGTCAAA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 121 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:83832811 original size:22 final size:22
Alignment explanation
Indices: 83832780--83832821 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
83832770 TTTAACTTAA
*
83832780 TATTTTTTCTT-TTTCTTTTTT
1 TATTTTTTCTTCCTTCTTTTTT
83832801 TATTTTGTTCTTCCTTCTTTT
1 TATTTT-TTCTTCCTTCTTTT
83832822 CTCGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.05, C:0.14, G:0.02, T:0.79
Consensus pattern (22 bp):
TATTTTTTCTTCCTTCTTTTTT
Found at i:83834823 original size:22 final size:22
Alignment explanation
Indices: 83834795--83834838 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
83834785 GTGAATGACT
83834795 CACCCTTGTATTTATACTAGGG
1 CACCCTTGTATTTATACTAGGG
*
83834817 CACCCTTTTATTTATACTAGGG
1 CACCCTTGTATTTATACTAGGG
83834839 TTGCCACCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (22 bp):
CACCCTTGTATTTATACTAGGG
Found at i:83835092 original size:26 final size:27
Alignment explanation
Indices: 83835027--83835093 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
83835017 TTTACTTTAG
*
83835027 TAAAATTTTGACGATTTTACCCTTCGA
1 TAAAATTTTGACAATTTTACCCTTCGA
*
83835054 TAAAATTTTGACAATTTTACCC-TCTA
1 TAAAATTTTGACAATTTTACCCTTCGA
*
83835080 TAAAATTTCGACAA
1 TAAAATTTTGACAA
83835094 AATTCGTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 16 0.43
27 21 0.57
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (27 bp):
TAAAATTTTGACAATTTTACCCTTCGA
Found at i:83845628 original size:21 final size:20
Alignment explanation
Indices: 83845590--83845638 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
83845580 ATATTAGTTT
*
83845590 ATAATTAATAATAATTAACC
1 ATAATTAATAATAATTAAAC
*
83845610 ATTAATTAATTAAT-CTTAAAC
1 A-TAATTAA-TAATAATTAAAC
83845631 ATAATTAA
1 ATAATTAA
83845639 CAAGTTTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 8 0.32
21 13 0.52
22 4 0.16
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAATTAATAATAATTAAAC
Found at i:83847316 original size:40 final size:40
Alignment explanation
Indices: 83847242--83847589 Score: 454
Period size: 40 Copynumber: 8.6 Consensus size: 40
83847232 AACCCAAGTA
* * *
83847242 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
* *
83847281 CCTTCGGGTCTTAGCCCAGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
83847321 CCTTCGGGACTTAGCCTGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
*
83847364 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
83847404 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
83847444 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
83847484 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
*
83847527 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
83847567 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
83847590 CATCCGAATA
Statistics
Matches: 272, Mismatches: 23, Indels: 27
0.84 0.07 0.08
Matches are distributed among these distances:
39 15 0.06
40 182 0.67
41 2 0.01
43 71 0.26
44 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:83847386 original size:83 final size:80
Alignment explanation
Indices: 83847242--83847589 Score: 536
Period size: 83 Copynumber: 4.3 Consensus size: 80
83847232 AACCCAAGTA
* * * *
83847242 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
83847306 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* * *
83847321 CCTTCGGGACTTAGCCTGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
83847386 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
* *
83847404 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
83847469 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* *
83847484 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
83847549 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
83847567 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
83847590 CATCCGAATA
Statistics
Matches: 245, Mismatches: 17, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
79 13 0.05
80 84 0.34
81 2 0.01
82 1 0.00
83 145 0.59
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:83847526 original size:163 final size:163
Alignment explanation
Indices: 83847242--83847589 Score: 662
Period size: 163 Copynumber: 2.1 Consensus size: 163
83847232 AACCCAAGTA
*
83847242 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCAGATATAG
*
83847306 TCACTAGCACAAATGCCTTCGGGACTTAGCCTGGGTATAGCAACTACTCGCACAAATGCCTTCGG
66 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
83847371 GACTTCGCCCGGATATAGTCACTAGCACAAATG
131 GACTTCGCCCGGATATAGTCACTAGCACAAATG
*
83847404 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCAGATATAG
83847469 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
66 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
83847534 GACTTCGCCCGGATATAGTCACTAGCACAAATG
131 GACTTCGCCCGGATATAGTCACTAGCACAAATG
83847567 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
83847590 CATCCGAATA
Statistics
Matches: 182, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
162 13 0.07
163 169 0.93
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (163 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCAGATATAG
TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGG
GACTTCGCCCGGATATAGTCACTAGCACAAATG
Found at i:83850883 original size:17 final size:17
Alignment explanation
Indices: 83850861--83850897 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
83850851 AGAAACATAG
83850861 ATGTAATCATTGGAATA
1 ATGTAATCATTGGAATA
83850878 ATGTAATCATTGGAATA
1 ATGTAATCATTGGAATA
83850895 ATG
1 ATG
83850898 ATACATTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.19, T:0.35
Consensus pattern (17 bp):
ATGTAATCATTGGAATA
Found at i:83852358 original size:31 final size:31
Alignment explanation
Indices: 83852261--83852364 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 31
83852251 TATTAAATTA
* * *
83852261 AATTTAATATTTATCTATATAGTAATTTATT
1 AATTTAATATTTATCTAGATAATATTTTATT
* * * **
83852292 AATTCAATATTTATAT-GA-GATATTAAACTT
1 AATTTAATATTTATCTAGATAATATTTTA-TT
*
83852322 AAATTTAATAATTATCTAGATAATATTTTATT
1 -AATTTAATATTTATCTAGATAATATTTTATT
83852354 AATTTAATATT
1 AATTTAATATT
83852365 AATGTGATTA
Statistics
Matches: 54, Mismatches: 15, Indels: 8
0.70 0.19 0.10
Matches are distributed among these distances:
29 4 0.07
30 3 0.06
31 37 0.69
32 4 0.07
33 6 0.11
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (31 bp):
AATTTAATATTTATCTAGATAATATTTTATT
Found at i:83853402 original size:52 final size:52
Alignment explanation
Indices: 83853341--83853442 Score: 195
Period size: 52 Copynumber: 2.0 Consensus size: 52
83853331 ATTCGAGTTG
*
83853341 ACTCGAATAATTCGAACAACTCGATTCGATTAACTCAAAATTCAAATTTTCA
1 ACTCGAATAACTCGAACAACTCGATTCGATTAACTCAAAATTCAAATTTTCA
83853393 ACTCGAATAACTCGAACAACTCGATTCGATTAACTCAAAATTCAAATTTT
1 ACTCGAATAACTCGAACAACTCGATTCGATTAACTCAAAATTCAAATTTT
83853443 TTCAATTTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (52 bp):
ACTCGAATAACTCGAACAACTCGATTCGATTAACTCAAAATTCAAATTTTCA
Found at i:83859193 original size:23 final size:22
Alignment explanation
Indices: 83859167--83859210 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
83859157 ATGGTTTTAA
*
83859167 ATTTTTAAAAAATATAAAATAAT
1 ATTTTCAAAAAATA-AAAATAAT
*
83859190 ATTTTCCAAAAATAAAAATAA
1 ATTTTCAAAAAATAAAAATAA
83859211 AAATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (22 bp):
ATTTTCAAAAAATAAAAATAAT
Found at i:83862420 original size:19 final size:20
Alignment explanation
Indices: 83862398--83862475 Score: 83
Period size: 19 Copynumber: 4.0 Consensus size: 20
83862388 TATGTTACAC
83862398 GGATGAATTACTG-TTATAT
1 GGATGAATTACTGTTTATAT
* *
83862417 GGATGAAGTACTGTTTAAAT
1 GGATGAATTACTGTTTATAT
*
83862437 GGATGAGTTACTG-TTATCA-
1 GGATGAATTACTGTTTAT-AT
*
83862456 -AATGAATTACTGTTTATAT
1 GGATGAATTACTGTTTATAT
83862475 G
1 G
83862476 ATTGAGAGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
18 11 0.23
19 19 0.40
20 17 0.36
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (20 bp):
GGATGAATTACTGTTTATAT
Found at i:83862440 original size:20 final size:20
Alignment explanation
Indices: 83862398--83862451 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
83862388 TATGTTACAC
* *
83862398 GGATGAATTACTG-TTATAT
1 GGATGAAGTACTGTTTAAAT
83862417 GGATGAAGTACTGTTTAAAT
1 GGATGAAGTACTGTTTAAAT
83862437 GGATG-AGTTACTGTT
1 GGATGAAG-TACTGTT
83862452 ATCAAATGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.39
Consensus pattern (20 bp):
GGATGAAGTACTGTTTAAAT
Found at i:83864186 original size:32 final size:32
Alignment explanation
Indices: 83864145--83864207 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
83864135 TTTTTAGTTT
83864145 TTATTATTAATAATTACTTTTTCAGAGTTTTG
1 TTATTATTAATAATTACTTTTTCAGAGTTTTG
* *
83864177 TTATTATTAATAATTTCTTTTTCATAGTTTT
1 TTATTATTAATAATTACTTTTTCAGAGTTTT
83864208 ACTCCTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.60
Consensus pattern (32 bp):
TTATTATTAATAATTACTTTTTCAGAGTTTTG
Found at i:83868243 original size:50 final size:50
Alignment explanation
Indices: 83868168--83868313 Score: 274
Period size: 50 Copynumber: 2.9 Consensus size: 50
83868158 TAGATCATTG
*
83868168 CGTCACAAACCAAAAGGTCGACCCACATTAACTCAGATACGTGACATTTA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
*
83868218 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATATGTGACATTTA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
83868268 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACA
83868314 ACATGGATAT
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 93 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.18
Consensus pattern (50 bp):
CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
Found at i:83868458 original size:20 final size:20
Alignment explanation
Indices: 83868435--83868475 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
83868425 CTAATTAACA
83868435 GATTTATTAATATTTTAATC
1 GATTTATTAATATTTTAATC
* *
83868455 GATTTATTTATTTTTTAATC
1 GATTTATTAATATTTTAATC
83868475 G
1 G
83868476 CAATTCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (20 bp):
GATTTATTAATATTTTAATC
Found at i:83873629 original size:20 final size:20
Alignment explanation
Indices: 83873604--83873646 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
83873594 TATATTTTTA
* *
83873604 TTTTATGTATTTTTTCTAAT
1 TTTTATGTAATATTTCTAAT
*
83873624 TTTTATTTAATATTTCTAAT
1 TTTTATGTAATATTTCTAAT
83873644 TTT
1 TTT
83873647 ATTTTTTGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTTATGTAATATTTCTAAT
Found at i:83875103 original size:3 final size:3
Alignment explanation
Indices: 83875095--83875123 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
83875085 TAAGAAATGG
83875095 AGA AGA AGA AGA AGA A-A AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
83875124 GAAAATTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:83875114 original size:14 final size:14
Alignment explanation
Indices: 83875097--83875123 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83875087 AGAAATGGAG
83875097 AAGAAGAAGAAGAA
1 AAGAAGAAGAAGAA
83875111 AAGAAGAAGAAGA
1 AAGAAGAAGAAGA
83875124 GAAAATTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (14 bp):
AAGAAGAAGAAGAA
Found at i:83875115 original size:17 final size:16
Alignment explanation
Indices: 83875095--83875128 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
83875085 TAAGAAATGG
83875095 AGAAGAAGAAGAAGAAA
1 AGAAGAAGAAG-AGAAA
83875112 AGAAGAAGAAGAGAAA
1 AGAAGAAGAAGAGAAA
83875128 A
1 A
83875129 TTGAAGGAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (16 bp):
AGAAGAAGAAGAGAAA
Found at i:83876249 original size:21 final size:21
Alignment explanation
Indices: 83876223--83876265 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
83876213 CAATGTGGCA
*
83876223 AGTTAATTGCCCACATCAGCT
1 AGTTAACTGCCCACATCAGCT
* *
83876244 AGTTAACTGGCCACGTCAGCT
1 AGTTAACTGCCCACATCAGCT
83876265 A
1 A
83876266 TCCCATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (21 bp):
AGTTAACTGCCCACATCAGCT
Found at i:83883267 original size:31 final size:30
Alignment explanation
Indices: 83883210--83883267 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
83883200 TTTTCGAGCC
* *
83883210 TAGGGGCAAATTTGTAATTTTGCAAAGGTT
1 TAGGGGCAAAATTGTAATTTTCCAAAGGTT
83883240 TAGGGGCAAAATTGTAATTTTTCCAAAG
1 TAGGGGCAAAATTGTAA-TTTTCCAAAG
83883268 TTTGAGTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAATTTTCCAAAGGTT
Found at i:83887296 original size:12 final size:13
Alignment explanation
Indices: 83887268--83887300 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
83887258 TTATTTCTTT
83887268 TTCTCCATCTACC
1 TTCTCCATCTACC
*
83887281 TTCTCC-TCTTCC
1 TTCTCCATCTACC
83887293 TTCTCCAT
1 TTCTCCAT
83887301 AGCCGAGCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:83888404 original size:28 final size:28
Alignment explanation
Indices: 83888373--83888433 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
83888363 ACTAGAATAA
*
83888373 CCCTATGTATGCAAAATTACCATTATAC
1 CCCTATGTATGCAAAATGACCATTATAC
*
83888401 CCCTATGTATGCAAAATGACCTTTATAC
1 CCCTATGTATGCAAAATGACCATTATAC
83888429 CCCTA
1 CCCTA
83888434 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
CCCTATGTATGCAAAATGACCATTATAC
Found at i:83888597 original size:27 final size:28
Alignment explanation
Indices: 83888539--83888628 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
83888529 AGAAAGCGTC
*
83888539 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
83888567 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
83888594 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
83888623 CTGGTG
1 CTGGTG
83888629 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:83888639 original size:29 final size:28
Alignment explanation
Indices: 83888549--83888639 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
83888539 CTGGTGGCTA
* * *
83888549 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
83888577 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
83888604 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
83888633 TGTCACA
1 TGCCACA
83888640 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:83888647 original size:55 final size:56
Alignment explanation
Indices: 83888539--83888653 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
83888529 AGAAAGCGTC
* * *
83888539 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
83888594 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
83888650 CTGG
1 CTGG
83888654 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:83890101 original size:47 final size:46
Alignment explanation
Indices: 83889909--83890516 Score: 331
Period size: 47 Copynumber: 12.7 Consensus size: 46
83889899 ATTGACGGTT
*
83889909 AAGGATACCATGTAAGACCATGTCAAGACATGGCA-TTGGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTTGGTAAGAC
* * * * * *
83889954 AAGGATCCCATGTAAGACCATCTCAAGACATGGCA-TCGGCATTGATT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTTGGTA-AGA-C
* *** ** *
83890001 AAAGACT-CCATGTAAGACCGCATCAAGATGTGG-AATTGGCACTAAGAC
1 AAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTTGG---TAAGAC
***
83890049 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCATTTGGTAAGAC
* ** *
83890096 AAGGATACCATGTAAGCCCATGTTTAGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCATTTGGTAAGAC
* * * * * * *
83890143 AAAGATATCATGTAAGACCATGCCAAGGCATGGGATTGATAAGTTCTATAGGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATT--T--G--GTA-A-GAC
* * * * *
83890197 AAGGAAATCATGCAATACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATT--TG-G------TAAGAC
* * *
83890252 AAAGG-TCCCATGTAAGACCATGTCAAGACATGGCA-TTGGAAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTTGGTAAGAC
* * * * *
83890297 AAGGAT-CCTGTGTAAGACCATGTCAAGACATGGCA-TCGGCATTGATT
1 AAGGATACC-ATGTAAGACCATGTCAAGACATGGCATTTGGTA-AGA-C
*
83890344 AAGGACT-CCATGTAAGACACA--TCAAGATATGGCA-TTGGCACTAAGAC
1 AAGGA-TACCATGTAAGAC-CATGTCAAGACATGGCATTTGG---TAAGAC
* ***
83890391 AAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCATTTGGTAAGAC
*** *
83890438 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCATTTGGTAAGAC
* * *
83890485 AAGGATATCATGTAAGACCATGCCAAGGCATG
1 AAGGATACCATGTAAGACCATGTCAAGACATG
83890517 ATATTGATAA
Statistics
Matches: 443, Mismatches: 81, Indels: 77
0.74 0.13 0.13
Matches are distributed among these distances:
44 6 0.01
45 72 0.16
46 33 0.07
47 201 0.45
48 29 0.07
49 14 0.03
50 11 0.02
51 1 0.00
52 5 0.01
53 1 0.00
54 35 0.08
55 28 0.06
56 5 0.01
57 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (46 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTTGGTAAGAC
Found at i:83890272 original size:55 final size:54
Alignment explanation
Indices: 83890151--83890289 Score: 163
Period size: 55 Copynumber: 2.6 Consensus size: 54
83890141 ATAAAGATAT
* * * * *
83890151 CATGTAAGACCATGCCAAGGCATGGGATTGATAAGTTCTATAGGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAAC
* * * **
83890205 CATGCAATACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGC-AAGGAAAC
83890260 CATGTAAGACCATGTCAAGACATGGCATTG
1 CATGTAAGACCATGTCAAGACATGGCATTG
83890290 GAAAGGCAAG
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
54 31 0.44
55 36 0.51
56 4 0.06
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAAC
Found at i:83890558 original size:342 final size:343
Alignment explanation
Indices: 83889916--83890632 Score: 1229
Period size: 342 Copynumber: 2.1 Consensus size: 343
83889906 GTTAAGGATA
*
83889916 CCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCCATGTAAGACCATCTCAAG
1 CCATGTAAGACCATGTCAAGACATGGCATTGGAAAGGCAAGGATCCCATGTAAGACCATCTCAAG
* *
83889981 ACATGGCATCGGCATTGATTAAAGACTCCATGTAAGACCGCATCAAGATGTGGAATTGGCACTAA
66 ACATGGCATCGGCATTGATTAAAGACTCCATGTAAGACCACATCAAGATATGGAATTGGCACTAA
83890046 GACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAA
131 GACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAA
* *
83890111 GCCCATGTTTAGAACATGGCATTTGGTAAGATAAAGATATCATGTAAGACCATGCCAAGGCATGG
196 GACCATGTTTAGAACATGGCATTTGGTAAGATAAAGATATCATGTAAGACCATGCCAAGGCATGA
* * * *
83890176 GATTGATAAGTTCTATAGGGCAAGGAAATCATGCAATACCATGTCAAGACATGGCATTGATGAGT
261 GATTGATAAGTTCTATAAGGCAAGAAAATCATGCAATACCATGTCAAGACATGGCATTAATAAGT
83890241 TACTATAAGGCAAAGGTC
326 TACTATAAGGCAAAGGTC
** *
83890259 CCATGTAAGACCATGTCAAGACATGGCATTGGAAAGGCAAGGATCCTGTGTAAGACCATGTCAAG
1 CCATGTAAGACCATGTCAAGACATGGCATTGGAAAGGCAAGGATCCCATGTAAGACCATCTCAAG
* *
83890324 ACATGGCATCGGCATTGATTAAGGACTCCATGTAAGA-CACATCAAGATATGGCATTGGCACTAA
66 ACATGGCATCGGCATTGATTAAAGACTCCATGTAAGACCACATCAAGATATGGAATTGGCACTAA
*
83890388 GACAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAA
131 GACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAA
* *
83890453 GACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGA
196 GACCATGTTTAGAACATGGCATTTGGTAAGATAAAGATATCATGTAAGACCATGCCAAGGCATGA
* * *
83890518 TATTGATAAGTTCTATAAGGCAAGAAAATCGTGTAATACCATGTCAAGACATGGCATTAATAAGT
261 GATTGATAAGTTCTATAAGGCAAGAAAATCATGCAATACCATGTCAAGACATGGCATTAATAAGT
83890583 TACTATAAGGCAAAGGTC
326 TACTATAAGGCAAAGGTC
* *
83890601 CCATGTAAGACCATGCCAAGGCATGGCATTGG
1 CCATGTAAGACCATGTCAAGACATGGCATTGG
83890633 TGAGTTCATA
Statistics
Matches: 352, Mismatches: 22, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
342 255 0.72
343 97 0.28
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (343 bp):
CCATGTAAGACCATGTCAAGACATGGCATTGGAAAGGCAAGGATCCCATGTAAGACCATCTCAAG
ACATGGCATCGGCATTGATTAAAGACTCCATGTAAGACCACATCAAGATATGGAATTGGCACTAA
GACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAA
GACCATGTTTAGAACATGGCATTTGGTAAGATAAAGATATCATGTAAGACCATGCCAAGGCATGA
GATTGATAAGTTCTATAAGGCAAGAAAATCATGCAATACCATGTCAAGACATGGCATTAATAAGT
TACTATAAGGCAAAGGTC
Found at i:83893836 original size:11 final size:11
Alignment explanation
Indices: 83893820--83893844 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
83893810 ATCTGTGTTC
83893820 TTTATTTTATT
1 TTTATTTTATT
83893831 TTTATTTTATT
1 TTTATTTTATT
83893842 TTT
1 TTT
83893845 TTCACAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:83894448 original size:13 final size:13
Alignment explanation
Indices: 83894430--83894454 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83894420 ATTTTTTTAA
83894430 TTTTAATTAATAT
1 TTTTAATTAATAT
83894443 TTTTAATTAATA
1 TTTTAATTAATA
83894455 ACTCATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAATTAATAT
Found at i:83894526 original size:30 final size:28
Alignment explanation
Indices: 83894461--83894528 Score: 82
Period size: 32 Copynumber: 2.3 Consensus size: 28
83894451 AATAACTCAT
83894461 TTATATATATAAATTATTTTTAACATAA
1 TTATATATATAAATTATTTTTAACATAA
* *
83894489 TGATATATATAAAATATATTTTTATTATATAA
1 TTATATATAT-AAAT-TATTTTTA--ACATAA
83894521 TTATATAT
1 TTATATAT
83894529 TTATTATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 9 0.27
29 4 0.12
30 8 0.24
32 12 0.36
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (28 bp):
TTATATATATAAATTATTTTTAACATAA
Found at i:83909137 original size:47 final size:47
Alignment explanation
Indices: 83909028--83909138 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 47
83909018 CCGGGATAAG
* * * *
83909028 CACATAGTGCTTCATCGGAATAAATCTGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
83909075 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
83909122 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
83909139 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:83915540 original size:46 final size:49
Alignment explanation
Indices: 83915447--83915551 Score: 135
Period size: 46 Copynumber: 2.2 Consensus size: 49
83915437 TACATGAATT
* * *
83915447 ATTCCTGTCTCCAATGCCATATATATATCTAATATGGGCTTATATGGCTC
1 ATTCCTGTCTCCAAAGCCA-ATATATATCTAATATGGACTTACATGGCTC
*
83915497 ATTCCTGTCTCCAAAGCC-ATATA-A-CTGATATGGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCAATATATATCTAATATGGACTTACATGGCTC
*
83915543 ATTTCTGTC
1 ATTCCTGTC
83915552 CTATCCTATC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 5 0.10
50 17 0.34
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (49 bp):
ATTCCTGTCTCCAAAGCCAATATATATCTAATATGGACTTACATGGCTC
Found at i:83919653 original size:47 final size:47
Alignment explanation
Indices: 83919545--83919654 Score: 125
Period size: 47 Copynumber: 2.3 Consensus size: 47
83919535 CGGGATAAGA
* * * *
83919545 ACATAGTGCTTCATTGGAATAAATCCGGAACTTTAACATTATAGTAC
1 ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTAC
* * *
83919592 ACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-AC
1 ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTAC
83919639 ACATAGTG-TCTCATCG
1 ACATAGTGCT-TCATCG
83919655 ACTCAATGTC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 49 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (47 bp):
ACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTAC
Found at i:83924219 original size:21 final size:21
Alignment explanation
Indices: 83924193--83924236 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
83924183 TTTTAAGGGG
*
83924193 TTGAAA-TTAAATTATAAATTT
1 TTGAAAGTTAAAATAT-AATTT
83924214 TTGAAAGGTTAAAATATAATTT
1 TTGAAA-GTTAAAATATAATTT
83924236 T
1 T
83924237 ATCATTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 6 0.30
23 8 0.40
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (21 bp):
TTGAAAGTTAAAATATAATTT
Found at i:83927362 original size:22 final size:22
Alignment explanation
Indices: 83927337--83927386 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
83927327 TTTGCGACTT
*
83927337 TTTTGTCACTATTTTGCTACCA
1 TTTTGTCACTATATTGCTACCA
* * * *
83927359 TTTTATTATTATATTGCTACTA
1 TTTTGTCACTATATTGCTACCA
83927381 TTTTGT
1 TTTTGT
83927387 TGTTAATGTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.14, G:0.08, T:0.58
Consensus pattern (22 bp):
TTTTGTCACTATATTGCTACCA
Found at i:83927579 original size:18 final size:18
Alignment explanation
Indices: 83927538--83927580 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
83927528 GAAATATTTA
83927538 TTTTTAATGTTTTTAGTC
1 TTTTTAATGTTTTTAGTC
* *
83927556 TATTTAATGTATTTTA-TT
1 TTTTTAATGT-TTTTAGTC
83927574 TTTTTAA
1 TTTTTAA
83927581 AAATTATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.23, C:0.02, G:0.07, T:0.67
Consensus pattern (18 bp):
TTTTTAATGTTTTTAGTC
Found at i:83928213 original size:18 final size:18
Alignment explanation
Indices: 83928190--83928225 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
83928180 AGTGATAATA
83928190 ATGATTATACTAAAAATT
1 ATGATTATACTAAAAATT
*
83928208 ATGATTATATTAAAAATT
1 ATGATTATACTAAAAATT
83928226 GATACAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.42
Consensus pattern (18 bp):
ATGATTATACTAAAAATT
Found at i:83934432 original size:16 final size:15
Alignment explanation
Indices: 83934411--83934442 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
83934401 GAAAAAAAGA
83934411 AAAGAAGAAGAAGAAG
1 AAAGAAGAAG-AGAAG
83934427 AAAGAAGAAGAGAAG
1 AAAGAAGAAGAGAAG
83934442 A
1 A
83934443 GGAAAAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (15 bp):
AAAGAAGAAGAGAAG
Found at i:83935090 original size:60 final size:59
Alignment explanation
Indices: 83934990--83935129 Score: 226
Period size: 60 Copynumber: 2.4 Consensus size: 59
83934980 TGTTGTTGTT
* *
83934990 TACAAATTGCTTAACAGTTGGTATACATGGCTGTTGGTTAGAAAAGATAAAAAATTGATA
1 TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGAT-AAAAATTGATA
* * *
83935050 TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAGTTGGTA
1 TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAAAAATTGATA
83935109 TACAAATTGCTTAACAGTTGG
1 TACAAATTGCTTAACAGTTGG
83935130 ATAACAAATA
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
59 29 0.39
60 46 0.61
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (59 bp):
TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAAAAATTGATA
Found at i:83935593 original size:21 final size:21
Alignment explanation
Indices: 83935560--83935608 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
83935550 GTTAGGGCAC
* *
83935560 CTTGTTGAGTTGGGGTACCCT
1 CTTGCTGACTTGGGGTACCCT
*
83935581 CTTGCTGACTTGGGGTAGCCT
1 CTTGCTGACTTGGGGTACCCT
*
83935602 GTTGCTG
1 CTTGCTG
83935609 GGTTCGAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.08, C:0.20, G:0.35, T:0.37
Consensus pattern (21 bp):
CTTGCTGACTTGGGGTACCCT
Found at i:83936394 original size:42 final size:43
Alignment explanation
Indices: 83936276--83936451 Score: 195
Period size: 42 Copynumber: 4.2 Consensus size: 43
83936266 AAAAAAAAAC
* *
83936276 TCATTGCATGCATATTAAAAAATAGGCAAC-AC---ACAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
* *
83936315 TCATTGCATACATATTAAAAAATAGTCAATAGA-TTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACA-ACTTTCCAACAA
* *
83936358 TCATTGCATGCATATT-TAAAATAGTCAACAACTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
* * * *
83936400 TCATTGCATACATATTAAAAAA-AGTCAATAGCTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
*
83936442 TCACTGCATG
1 TCATTGCATG
83936452 TGATCAGCAA
Statistics
Matches: 116, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 27 0.23
41 2 0.02
42 62 0.53
43 25 0.22
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.29
Consensus pattern (43 bp):
TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
Found at i:83936444 original size:84 final size:82
Alignment explanation
Indices: 83936276--83936451 Score: 239
Period size: 84 Copynumber: 2.1 Consensus size: 82
83936266 AAAAAAAAAC
83936276 TCATTGCATGCATATTAAAAAATAGGCAACACACAACAATCATTGCATACATATTAAAAAATAGT
1 TCATTGCATGCATATTAAAAAATAGGCAACACACAACAATCATTGCATACATATTAAAAAATAGT
83936341 CAATAGATTTCCAACAA
66 CAATAGATTTCCAACAA
* * * *
83936358 TCATTGCATGCATATT-TAAAATAGTCAACAACTTTCCAATAATCATTGCATACATATTAAAAAA
1 TCATTGCATGCATATTAAAAAATAGGCAAC-AC---ACAACAATCATTGCATACATATTAAAAAA
* *
83936422 -AGTCAATAGCTTTCCAATAA
62 TAGTCAATAGATTTCCAACAA
*
83936442 TCACTGCATG
1 TCATTGCATG
83936452 TGATCAGCAA
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
81 11 0.13
82 18 0.22
84 27 0.33
85 27 0.33
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.29
Consensus pattern (82 bp):
TCATTGCATGCATATTAAAAAATAGGCAACACACAACAATCATTGCATACATATTAAAAAATAGT
CAATAGATTTCCAACAA
Found at i:83938112 original size:15 final size:15
Alignment explanation
Indices: 83938087--83938132 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
83938077 TCAGATGCAT
*
83938087 CACTATCACTACTAGA
1 CACT-TCACTACCAGA
83938103 CACTTCACTACCAGA
1 CACTTCACTACCAGA
*
83938118 CACATCACTACCAGA
1 CACTTCACTACCAGA
83938133 AACGTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
15 24 0.86
16 4 0.14
ACGTcount: A:0.37, C:0.37, G:0.07, T:0.20
Consensus pattern (15 bp):
CACTTCACTACCAGA
Found at i:83938629 original size:64 final size:63
Alignment explanation
Indices: 83938420--83938811 Score: 554
Period size: 64 Copynumber: 6.2 Consensus size: 63
83938410 TAGGAGCTTG
* * * * **
83938420 GATACAAACAATGACAGATATACACAATAAACATCAGTTTAATAATGTA-TAATTTAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGCA
* * * **
83938482 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTAATAATGTA-TAATTTAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGCA
* *
83938544 GATACAAACAATGACAGATATACACAATAAACATCAATTTGATAATGACATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATG-CATTCATACAATGGCA
* *
83938608 GATACAAACAATGGCAGATATACACAATAAACATCAATTTGATAATGACATTCATACAATGGTA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATG-CATTCATACAATGGCA
* * * *
83938672 GATACAAACAATGGCAGATATACACAATAAAGAGCAGTTTGATAATGGCATTCATATAATGACA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAAT-GCATTCATACAATGGCA
*
83938736 GATACAAACAATGGCAGATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAAT-GCATTCATACAATGGCA
83938800 GATACAAACAAT
1 GATACAAACAAT
83938812 AAACATCAAA
Statistics
Matches: 308, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
62 105 0.34
63 1 0.00
64 201 0.65
65 1 0.00
ACGTcount: A:0.47, C:0.15, G:0.14, T:0.25
Consensus pattern (63 bp):
GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATACAATGGCA
Found at i:83938719 original size:34 final size:33
Alignment explanation
Indices: 83938681--83938785 Score: 85
Period size: 34 Copynumber: 3.2 Consensus size: 33
83938671 AGATACAAAC
83938681 AATGGCAGATATACACAATAAAGAGCAGTTTGAT
1 AATGGCAGATATACACAATAAAGA-CAGTTTGAT
* * *** *
83938715 AATGGC--AT-T-CA-TATAATGACAGATACAAAC
1 AATGGCAGATATACACAATAAAGACAG-T-TTGAT
83938745 AATGGCAGATATACACAATAAAGATCAGTTTGAT
1 AATGGCAGATATACACAATAAAGA-CAGTTTGAT
83938779 AATGGCA
1 AATGGCA
83938786 TTCATACAAT
Statistics
Matches: 51, Mismatches: 12, Indels: 16
0.65 0.15 0.20
Matches are distributed among these distances:
28 3 0.06
29 7 0.14
30 9 0.18
31 1 0.02
32 4 0.08
33 1 0.02
34 16 0.31
35 7 0.14
36 3 0.06
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (33 bp):
AATGGCAGATATACACAATAAAGACAGTTTGAT
Found at i:83938986 original size:30 final size:28
Alignment explanation
Indices: 83938931--83939004 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 28
83938921 ATAACAAATA
83938931 AAATCAAAATCAAAATAACCCTAAATCG
1 AAATCAAAATCAAAATAACCCTAAATCG
* * *
83938959 AAATCAAAATCAAATTCTAATCCTAAATTG
1 AAATCAAAATCAAA--ATAACCCTAAATCG
*
83938989 AGATCAAAATCAAAAT
1 AAATCAAAATCAAAAT
83939005 TGAAATCAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 15 0.38
30 24 0.62
ACGTcount: A:0.55, C:0.18, G:0.04, T:0.23
Consensus pattern (28 bp):
AAATCAAAATCAAAATAACCCTAAATCG
Found at i:83939030 original size:18 final size:18
Alignment explanation
Indices: 83938983--83939022 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
83938973 TTCTAATCCT
*
83938983 AAATTGAGATCAAAATCA
1 AAATTGAAATCAAAATCA
*
83939001 AAATTGAAATCAAAATCT
1 AAATTGAAATCAAAATCA
83939019 AAAT
1 AAAT
83939023 CTAAATCAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.25
Consensus pattern (18 bp):
AAATTGAAATCAAAATCA
Found at i:83939662 original size:30 final size:30
Alignment explanation
Indices: 83939593--83939663 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 30
83939583 GGTAACTGTT
* *
83939593 AGTTAGTGACTGTTTTGTCACTTTTTTATA
1 AGTTAGTGACCGTTTTGTCACTTTTTGATA
*
83939623 ACGTTAGTGACCGTTTTGTTACTTTTTGA-A
1 A-GTTAGTGACCGTTTTGTCACTTTTTGATA
83939653 AGTTAAGTGAC
1 AGTT-AGTGAC
83939664 TAAAATGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 9 0.25
31 24 0.67
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (30 bp):
AGTTAGTGACCGTTTTGTCACTTTTTGATA
Found at i:83939833 original size:6 final size:6
Alignment explanation
Indices: 83939820--83939862 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
83939810 GTATTATTTA
*
83939820 AATT-T AATTAT AATTAT AATTAT AATTATT AATATAA AATTAT
1 AATTAT AATTAT AATTAT AATTAT AATTA-T AAT-TAT AATTAT
83939863 TTTTAATGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
5 4 0.12
6 20 0.61
7 7 0.21
8 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTAT
Found at i:83939847 original size:18 final size:20
Alignment explanation
Indices: 83939819--83939862 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
83939809 AGTATTATTT
83939819 AAATT-TAATTA-TAAT-TA
1 AAATTATAATTATTAATATA
*
83939836 TAATTATAATTATTAATATA
1 AAATTATAATTATTAATATA
83939856 AAATTAT
1 AAATTAT
83939863 TTTTAATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 6 0.27
19 4 0.18
20 8 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AAATTATAATTATTAATATA
Found at i:83948063 original size:28 final size:27
Alignment explanation
Indices: 83947994--83948063 Score: 65
Period size: 28 Copynumber: 2.6 Consensus size: 27
83947984 AAAGATTATT
*
83947994 AATTATTAATT-ATA-TTTTTTTTAAA
1 AATTATTAATTAATACTTTTATTTAAA
*
83948019 AATTA-TATATTATATACTTTTATTTATA
1 AATTATTA-ATTA-ATACTTTTATTTAAA
*
83948047 TATTATGTAATTAATAC
1 AATTAT-TAATTAATAC
83948064 CTATAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
24 2 0.06
25 8 0.22
27 3 0.08
28 17 0.47
29 4 0.11
30 2 0.06
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (27 bp):
AATTATTAATTAATACTTTTATTTAAA
Found at i:83967978 original size:2 final size:2
Alignment explanation
Indices: 83967971--83968004 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
83967961 AGAATTTTAT
83967971 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
83968005 AATTTTTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:83971548 original size:29 final size:30
Alignment explanation
Indices: 83971482--83971538 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
83971472 AATAGTTTAT
*
83971482 ATTTTTATAATTTTTAAAAGATTAAAATAA
1 ATTTTTATAATTTTTAAAAGACTAAAATAA
*
83971512 ATTTTTATTATTTTT-AAAGACTAAAAT
1 ATTTTTATAATTTTTAAAAGACTAAAAT
83971539 GTAATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (30 bp):
ATTTTTATAATTTTTAAAAGACTAAAATAA
Found at i:83974968 original size:43 final size:43
Alignment explanation
Indices: 83974920--83975002 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
83974910 ACATATATGA
* * *
83974920 CATCCATTATGAACTTGGACCACTCAACGAGCTCGGATGCTCG
1 CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCTCG
83974963 CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGC
1 CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGC
83975003 CACATATATC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.20
Consensus pattern (43 bp):
CATCCATAATGAACTCGGACCACTCAACGAGCTCAGATGCTCG
Found at i:83975030 original size:42 final size:43
Alignment explanation
Indices: 83974919--83975031 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
83974909 AACATATATG
* * * *
83974919 ACATCCATTATGAACTTGGACCACTCAACGAGCTCGGATGCTC
1 ACATACATAATGAACCTGGACCACTCAACGAGCTCAGATGCTC
* *
83974962 GCATCCATAATGAA-CTCGGACCACTCAACGAGCTCAGATGC-C
1 ACATACATAATGAACCT-GGACCACTCAACGAGCTCAGATGCTC
* * *
83975004 ACATATATCATGAACCTAGACCACTCAA
1 ACATACATAATGAACCTGGACCACTCAA
83975032 AGAGTTCGGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 22 0.37
43 37 0.63
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (43 bp):
ACATACATAATGAACCTGGACCACTCAACGAGCTCAGATGCTC
Found at i:83982331 original size:2 final size:2
Alignment explanation
Indices: 83982318--83982350 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
83982308 AAAGTTTATG
*
83982318 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
83982351 GAACGTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:83986368 original size:58 final size:57
Alignment explanation
Indices: 83986250--83986369 Score: 136
Period size: 58 Copynumber: 2.1 Consensus size: 57
83986240 ACATTTTCAT
* * *
83986250 TTTCATTTCCATTTTGAGAAAATCACATTTATTTCCAAATGATTCCATTTTCTCCAA
1 TTTCATTTCCATTTTGAGAAAACCACAATGATTTCCAAATGATTCCATTTTCTCCAA
* * * *
83986307 TTTCATTTTCATTTTGGAGAAAACCATAATGATTTCCTGAATGTTTCC-TATTTCTCC-A
1 TTTCATTTCCATTTT-GAGAAAACCACAATGATTTCC-AAATGATTCCAT-TTTCTCCAA
83986365 TTTCA
1 TTTCA
83986370 CCATTTCTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
57 14 0.26
58 24 0.45
59 15 0.28
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (57 bp):
TTTCATTTCCATTTTGAGAAAACCACAATGATTTCCAAATGATTCCATTTTCTCCAA
Found at i:83995334 original size:39 final size:39
Alignment explanation
Indices: 83995216--83995443 Score: 312
Period size: 39 Copynumber: 5.8 Consensus size: 39
83995206 GCTACTCGTT
* * * * * *
83995216 CAATCGCCTTCGGGACATAGCCCGGTTATGATAACCCGCA
1 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
* *
83995256 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
*
83995296 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
* *
83995335 CAATTGCCTTCGGTCTTAGCCCGGATATCATAACTCGCA
1 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
* * *
83995374 CAATTGCCTTCGAGCTTAGCCCGGATATCACAATTCACA
1 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
83995413 CAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CAATTGCCTTCGGGCTTAGCCCGGATATCAC
83995444 TCGAACATTC
Statistics
Matches: 168, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 123 0.73
40 45 0.27
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (39 bp):
CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:84019449 original size:10 final size:10
Alignment explanation
Indices: 84019434--84019468 Score: 70
Period size: 10 Copynumber: 3.5 Consensus size: 10
84019424 TAATGAAAGT
84019434 TTAAACAAAA
1 TTAAACAAAA
84019444 TTAAACAAAA
1 TTAAACAAAA
84019454 TTAAACAAAA
1 TTAAACAAAA
84019464 TTAAA
1 TTAAA
84019469 GAATGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.23
Consensus pattern (10 bp):
TTAAACAAAA
Found at i:84020124 original size:43 final size:43
Alignment explanation
Indices: 84020074--84020163 Score: 180
Period size: 43 Copynumber: 2.1 Consensus size: 43
84020064 AAATCAAAGA
84020074 GAATGAAAAATTACCAAAAAGCCCTTGTAAGTTGATATTTTTG
1 GAATGAAAAATTACCAAAAAGCCCTTGTAAGTTGATATTTTTG
84020117 GAATGAAAAATTACCAAAAAGCCCTTGTAAGTTGATATTTTTG
1 GAATGAAAAATTACCAAAAAGCCCTTGTAAGTTGATATTTTTG
84020160 GAAT
1 GAAT
84020164 TTAGTCAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (43 bp):
GAATGAAAAATTACCAAAAAGCCCTTGTAAGTTGATATTTTTG
Found at i:84028147 original size:39 final size:39
Alignment explanation
Indices: 84028067--84028216 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
84028057 GTAGCCCACG
* * * * *
84028067 CAAAGGCCTTCGGAACTTAACCCGGATCTCGCAACTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATATCACAACTCGCA
* * *
84028107 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
* *
84028146 CAAATGCCTTCGGGTCTTAGCCCGGATGT-AGTC-ACTAGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCA--CAACTCGCA
*
84028186 CAAATGTCC-TCGAGACTTAGCCCGGATATCA
1 CAAATG-CCTTCG-GGCTTAGCCCGGATATCA
84028217 TTCAATTGCT
Statistics
Matches: 90, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
39 34 0.38
40 51 0.57
41 5 0.06
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:84028155 original size:79 final size:80
Alignment explanation
Indices: 84028067--84028216 Score: 180
Period size: 79 Copynumber: 1.9 Consensus size: 80
84028057 GTAGCCCACG
* * * *
84028067 CAAAGGCCTTCGGAACTTAACCCGGATCTCG-CAACTCGCACAATTG-CCTTCG-GGCTTAGCCC
1 CAAAGGCCTTCGGAACTTAACCCGGATCTAGTC-ACTAGCACAAATGTCC-TCGAGACTTAGCCC
84028129 GGATATCACAATTTGCA
64 GGATATCACAATTTGCA
* ** * *
84028146 CAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAAATGTCCTCGAGACTTAGCCCGG
1 CAAAGGCCTTCGGAACTTAACCCGGATCTAGTCACTAGCACAAATGTCCTCGAGACTTAGCCCGG
84028211 ATATCA
66 ATATCA
84028217 TTCAATTGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
79 39 0.66
80 20 0.34
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (80 bp):
CAAAGGCCTTCGGAACTTAACCCGGATCTAGTCACTAGCACAAATGTCCTCGAGACTTAGCCCGG
ATATCACAATTTGCA
Found at i:84030937 original size:18 final size:19
Alignment explanation
Indices: 84030902--84030937 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
84030892 AAATTGATAC
*
84030902 ATAAAATTTTATAATATAG
1 ATAAAATTTGATAATATAG
84030921 ATAAAATTTGA-AATATA
1 ATAAAATTTGATAATATA
84030938 TAATGAGTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (19 bp):
ATAAAATTTGATAATATAG
Found at i:84033051 original size:40 final size:40
Alignment explanation
Indices: 84032964--84033141 Score: 141
Period size: 40 Copynumber: 4.4 Consensus size: 40
84032954 ATGATAGCCG
* * * *
84032964 GGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACTATAACC-
1 GGCTAAGAT-CCGAAGGCATTCGTGCTA-GCGACTATATCCA
*
84033004 GGACTAAGATCCGAAGGCATTCGTG-TGAGTTG-CTATATCCA
1 GG-CTAAGATCCGAAGGCATTCGTGCT-AG-CGACTATATCCA
* * *
84033045 GGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCG
1 GGCTAAGATCCGAAGGCATTCGTGCTAGCGACTATATCCA
** * *
84033085 GGCTAAG-TCCCGAAGGCATTTATGCTAGTGACTATATCCG
1 GGCTAAGAT-CCGAAGGCATTCGTGCTAGCGACTATATCCA
* *
84033125 GGCTAAAACCCGAAGGC
1 GGCTAAGATCCGAAGGC
84033142 CTTGTGCAAG
Statistics
Matches: 117, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
39 1 0.01
40 91 0.78
41 24 0.21
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GGCTAAGATCCGAAGGCATTCGTGCTAGCGACTATATCCA
Found at i:84033120 original size:80 final size:81
Alignment explanation
Indices: 84032964--84033141 Score: 220
Period size: 80 Copynumber: 2.2 Consensus size: 81
84032954 ATGATAGCCG
* * * *
84032964 GGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCATTCGTG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCATTCATG
84033029 TGAGTTGCTATATCCA
66 TGAGTTGCTATATCCA
* * *
84033045 GGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGGCATTTAT
1 GGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGCATTCAT
*
84033108 GCT-AG-TGACTATATCCG
65 G-TGAGTTG-CTATATCCA
*
84033125 GGCTAAAACCCGAAGGC
1 GGCTAAGACCCGAAGGC
84033142 CTTGTGCAAG
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
79 3 0.04
80 56 0.66
81 26 0.31
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCATTCATG
TGAGTTGCTATATCCA
Found at i:84035571 original size:15 final size:15
Alignment explanation
Indices: 84035547--84035577 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
84035537 ACCTGGGGAT
*
84035547 TTCTATTGAGATTAC
1 TTCTAGTGAGATTAC
84035562 TTCTAGTGAGATTAC
1 TTCTAGTGAGATTAC
84035577 T
1 T
84035578 GTACTAAGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (15 bp):
TTCTAGTGAGATTAC
Found at i:84039903 original size:17 final size:17
Alignment explanation
Indices: 84039883--84039916 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84039873 AAGGCCAATT
*
84039883 TGGGCGTGTGGCCCATA
1 TGGGCCTGTGGCCCATA
*
84039900 TGGGCCTGTGGGCCATA
1 TGGGCCTGTGGCCCATA
84039917 ATTCTAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.24, G:0.41, T:0.24
Consensus pattern (17 bp):
TGGGCCTGTGGCCCATA
Found at i:84047360 original size:171 final size:171
Alignment explanation
Indices: 84047075--84047382 Score: 521
Period size: 171 Copynumber: 1.8 Consensus size: 171
84047065 AACATAGTGG
* *
84047075 TTTAATTACCGCTTAAGTCCTTGTCCATGTTTTAACTAGAGATTACTCTAGCAATTATATTTTTA
1 TTTAATTACCACTTAAGTCCTTGTCCATGTTTTAACTAAAGATTACTCTAGCAATTATATTTTTA
*
84047140 CTAGTTTTACAATTTAGTCCTTGCACCTTAATTAGTTACTAATTCAATAAATTT-TCTTATCCAA
66 CTAGTTTTACAATTTAGTCCTTGCACCTTAATTAATTACTAATTCAATAAATTTAT-TTATCCAA
84047204 AATTCAATAAATTTAATTAATCATCACTAAACTATTTATTTA
130 AATTCAATAAATTTAATTAATCATCACTAAACTATTTATTTA
* *
84047246 TTTAATTTCCACTTAAGTTCCTTGTCCATGTTTTAATTAAAGATTACTCTAGCAATTATA-TTTT
1 TTTAATTACCACTTAAG-TCCTTGTCCATGTTTTAACTAAAGATTACTCTAGCAATTATATTTTT
* *
84047310 ACTAGTTTTACAATTTATTCCTTGTACCTTAATTAATTACTAATTCAATAAATTTATTTATCCAA
65 ACTAGTTTTACAATTTAGTCCTTGCACCTTAATTAATTACTAATTCAATAAATTTATTTATCCAA
84047375 AATTCAAT
130 AATTCAAT
84047383 TATCCAAAAT
Statistics
Matches: 128, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
171 87 0.68
172 41 0.32
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (171 bp):
TTTAATTACCACTTAAGTCCTTGTCCATGTTTTAACTAAAGATTACTCTAGCAATTATATTTTTA
CTAGTTTTACAATTTAGTCCTTGCACCTTAATTAATTACTAATTCAATAAATTTATTTATCCAAA
ATTCAATAAATTTAATTAATCATCACTAAACTATTTATTTA
Found at i:84047385 original size:15 final size:15
Alignment explanation
Indices: 84047367--84047398 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
84047357 ATAAATTTAT
84047367 TTATCCAAAATTCAA
1 TTATCCAAAATTCAA
84047382 TTATCCAAAATTCAA
1 TTATCCAAAATTCAA
84047397 TT
1 TT
84047399 CACTTCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (15 bp):
TTATCCAAAATTCAA
Found at i:84051473 original size:42 final size:40
Alignment explanation
Indices: 84051411--84051641 Score: 221
Period size: 40 Copynumber: 5.6 Consensus size: 40
84051401 GACAAATCAG
*
84051411 CTATATGTGGCACTTAGTGTGCGATTTGACATAGCTTCGA
1 CTATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGA
* * * *
84051451 CTATTTATATGGCACTTAGTGTGTGATTCGACATAGTTTTGA
1 CTA--TATATGGCACTTAGTGTGCGATTTGACATAGCTTCGA
*
84051493 CTATATATATGGGGCACTTAGTGTGCGATTTGACATAGCTTCGG
1 C--TATATAT--GGCACTTAGTGTGCGATTTGACATAGCTTCGA
* * * * *
84051537 CTATATATGACACTTACTGTGCGAGATCGAGATAGCTTCGA
1 CTATATATGGCACTTAGTGTGCGA-TTTGACATAGCTTCGA
* * *
84051578 CTATATATGGCACTTAATGTGCGATTTAAAATAGCTTC-A
1 CTATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGA
* * * *
84051617 GCTATGTACGACACATAGTGTGCGA
1 -CTATATATGGCACTTAGTGTGCGA
84051642 GATATCGAGT
Statistics
Matches: 156, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
39 1 0.01
40 46 0.29
41 34 0.22
42 45 0.29
44 30 0.19
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (40 bp):
CTATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGA
Found at i:84051511 original size:44 final size:43
Alignment explanation
Indices: 84051412--84051615 Score: 206
Period size: 42 Copynumber: 4.8 Consensus size: 43
84051402 ACAAATCAGC
*
84051412 TATATGTGGCACTTAGTGTGCGATTTGACATAGCTTCGACTATT
1 TATATG-GGCACTTAGTGTGCGATTTGACATAGCTTCGACTATA
* * * *
84051456 TATAT-GGCACTTAGTGTGTGATTCGACATAGTTTTGACTATA
1 TATATGGGCACTTAGTGTGCGATTTGACATAGCTTCGACTATA
*
84051498 TATATGGGGCACTTAGTGTGCGATTTGACATAGCTTCGGC--TA
1 TATAT-GGGCACTTAGTGTGCGATTTGACATAGCTTCGACTATA
* * * * *
84051540 TATAT-GACACTTACTGTGCGAGATCGAGATAGCTTCGAC--TA
1 TATATGGGCACTTAGTGTGCGA-TTTGACATAGCTTCGACTATA
* * *
84051581 TATAT-GGCACTTAATGTGCGATTTAAAATAGCTTC
1 TATATGGGCACTTAGTGTGCGATTTGACATAGCTTC
84051616 AGCTATGTAC
Statistics
Matches: 135, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
40 24 0.18
41 34 0.25
42 44 0.33
44 33 0.24
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.36
Consensus pattern (43 bp):
TATATGGGCACTTAGTGTGCGATTTGACATAGCTTCGACTATA
Found at i:84051615 original size:81 final size:81
Alignment explanation
Indices: 84051411--84051644 Score: 263
Period size: 81 Copynumber: 2.8 Consensus size: 81
84051401 GACAAATCAG
* * * *
84051411 CTATATGTGGCACTTAGTGTGCGATTTGACATAGCTTCGACTATTTATATGGCACTTAGTGTGTG
1 CTATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGGCTA--TATATGACACTTAGTGTGCG
* * *
84051476 A-TTCGACATAGTTTTGA
64 AGATCGACATAGCTTCGA
*
84051493 CTATATATATGGGGCACTTAGTGTGCGATTTGACATAGCTTCGGCTATATATGACACTTACTGTG
1 C--TATATAT--GGCACTTAGTGTGCGATTTGACATAGCTTCGGCTATATATGACACTTAGTGTG
*
84051558 CGAGATCGAGATAGCTTCGA
62 CGAGATCGACATAGCTTCGA
* * * * * * *
84051578 CTATATATGGCACTTAATGTGCGATTTAAAATAGCTTCAGCTATGTACGACACATAGTGTGCGAG
1 CTATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGGCTATATATGACACTTAGTGTGCGAG
84051643 AT
66 AT
84051645 ATCGAGTATT
Statistics
Matches: 130, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
81 51 0.39
82 1 0.01
83 7 0.05
84 24 0.18
85 13 0.10
86 34 0.26
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (81 bp):
CTATATATGGCACTTAGTGTGCGATTTGACATAGCTTCGGCTATATATGACACTTAGTGTGCGAG
ATCGACATAGCTTCGA
Found at i:84057580 original size:21 final size:18
Alignment explanation
Indices: 84057554--84057596 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 18
84057544 AACGAGCTTG
84057554 TTTTATAGTGCTTTTAGATGT
1 TTTTATAGTG-TTTT-GA-GT
*
84057575 TTTTATTGTGTTTTGAGT
1 TTTTATAGTGTTTTGAGT
84057593 TTTT
1 TTTT
84057597 TATTGGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 2 0.10
20 4 0.19
21 9 0.43
ACGTcount: A:0.14, C:0.02, G:0.19, T:0.65
Consensus pattern (18 bp):
TTTTATAGTGTTTTGAGT
Found at i:84058057 original size:30 final size:30
Alignment explanation
Indices: 84058022--84058090 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
84058012 GCCGTTTTAA
* *
84058022 TATTTTTAGGTTTTTAGCTTAGTTTTATTT
1 TATTTTCAAGTTTTTAGCTTAGTTTTATTT
*
84058052 TATTTTCAATTTTTTAGCTTAGTTTTATTT
1 TATTTTCAAGTTTTTAGCTTAGTTTTATTT
84058082 TATTTTCAA
1 TATTTTCAA
84058091 TTTAGTCCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.20, C:0.06, G:0.09, T:0.65
Consensus pattern (30 bp):
TATTTTCAAGTTTTTAGCTTAGTTTTATTT
Found at i:84058091 original size:30 final size:30
Alignment explanation
Indices: 84058032--84058093 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
84058022 TATTTTTAGG
84058032 TTTTTAGCTTAGTTTTATTTTATTTTCAAT
1 TTTTTAGCTTAGTTTTATTTTATTTTCAAT
84058062 TTTTTAGCTTAGTTTTATTTTATTTTCAAT
1 TTTTTAGCTTAGTTTTATTTTATTTTCAAT
84058092 TT
1 TT
84058094 AGTCCTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (30 bp):
TTTTTAGCTTAGTTTTATTTTATTTTCAAT
Found at i:84058433 original size:19 final size:19
Alignment explanation
Indices: 84058411--84058447 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
84058401 AACGAATGTG
*
84058411 TGAATAATTAATGAATAAA
1 TGAATAATTAACGAATAAA
84058430 TGAATAATTAACGAATAA
1 TGAATAATTAACGAATAA
84058448 GTGACGGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.11, T:0.30
Consensus pattern (19 bp):
TGAATAATTAACGAATAAA
Found at i:84059808 original size:45 final size:45
Alignment explanation
Indices: 84059778--84060042 Score: 335
Period size: 45 Copynumber: 5.9 Consensus size: 45
84059768 TATCTCTAAC
84059778 ATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCG-T
1 ATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGAT
* * *
84059822 CATGTTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGGT
1 -ATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGAT
* *
84059868 AT-AGTGTCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGT
1 ATGA-TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGAT
*
84059913 AT-AGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGT
1 ATGA-TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGAT
* *
84059958 AT-AGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATATCCGGT
1 ATGA-TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGAT
* * *
84060003 AT-A-GTCCTATACTCTCTTTCAACAATGGTCTTATTCATTT
1 ATGATG-CC-ATAGTGTCTTTCAACTATGGTCTTATTCATTT
84060043 TTCAAGCCAA
Statistics
Matches: 205, Mismatches: 11, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
43 1 0.00
44 2 0.01
45 201 0.98
46 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.43
Consensus pattern (45 bp):
ATGATGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGAT
Found at i:84059890 original size:90 final size:90
Alignment explanation
Indices: 84059782--84060043 Score: 422
Period size: 90 Copynumber: 2.9 Consensus size: 90
84059772 TCTAACATGA
84059782 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCC-GTCAT-GTTGCCATAGTGTCTTTCAA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGT-ATAG-TGCCATAGTGTCTTTCAA
84059845 CTATGGTCTTATTCATTTTCGGTATAG
64 CTATGGTCTTATTCATTTTCGGTATAG
*
84059872 TGTCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGTATAGTGCCATAGTGTCTTTCAACT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGTATAGTGCCATAGTGTCTTTCAACT
*
84059937 ATGGTCTTATTCATTTCCGGTATAG
66 ATGGTCTTATTCATTTTCGGTATAG
* * *
84059962 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATATCCGGTATAGT-CCTATACTCTCTTTCAAC
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGTATAGTGCC-ATAGTGTCTTTCAAC
*
84060026 AATGGTCTTATTCATTTT
65 TATGGTCTTATTCATTTT
84060044 TCAAGCCAAT
Statistics
Matches: 161, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
89 2 0.01
90 156 0.97
91 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (90 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGTATAGTGCCATAGTGTCTTTCAACT
ATGGTCTTATTCATTTTCGGTATAG
Found at i:84059944 original size:135 final size:135
Alignment explanation
Indices: 84059782--84060042 Score: 420
Period size: 135 Copynumber: 1.9 Consensus size: 135
84059772 TCTAACATGA
84059782 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCC-GTCAT-GTTGCCATAGTGTCTTTCAA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGT-ATAG-TGCCATAGTGTCTTTCAA
* * * * * *
84059845 CTATGGTCTTATTCATTTTCGGTATAGT-GTCATAGTGTCTTTCAACTATGGTCTTATTCATTTC
64 CTATGGTCTTATTCATATCCGGTATAGTCCT-ATACTCTCTTTCAACAATGGTCTTATTCATTTC
84059909 CGGTATAG
128 CGGTATAG
84059917 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGTATAGTGCCATAGTGTCTTTCAACT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGTATAGTGCCATAGTGTCTTTCAACT
84059982 ATGGTCTTATTCATATCCGGTATAGTCCTATACTCTCTTTCAACAATGGTCTTATTCATTT
66 ATGGTCTTATTCATATCCGGTATAGTCCTATACTCTCTTTCAACAATGGTCTTATTCATTT
84060043 TTCAAGCCAA
Statistics
Matches: 117, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
135 113 0.97
136 4 0.03
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (135 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGTATAGTGCCATAGTGTCTTTCAACT
ATGGTCTTATTCATATCCGGTATAGTCCTATACTCTCTTTCAACAATGGTCTTATTCATTTCCGG
TATAG
Found at i:84063183 original size:46 final size:46
Alignment explanation
Indices: 84063126--84063258 Score: 153
Period size: 46 Copynumber: 2.9 Consensus size: 46
84063116 ATGGTTGAGC
*
84063126 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATAC-AAGG
* *** * *
84063173 -TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACAAGG
*
84063218 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT
84063259 GTGTTGAGTT
Statistics
Matches: 69, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
45 2 0.03
46 35 0.51
47 32 0.46
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAGG
Found at i:84065699 original size:20 final size:21
Alignment explanation
Indices: 84065656--84065700 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
84065646 ATACAGATCC
84065656 AAATTCAGATATCAGATTACA
1 AAATTCAGATATCAGATTACA
*
84065677 AAATT-AGAT-TCAGATATAGA
1 AAATTCAGATATCAGAT-TACA
84065697 AAAT
1 AAAT
84065701 CCTACCCCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 11 0.50
21 5 0.23
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (21 bp):
AAATTCAGATATCAGATTACA
Found at i:84068237 original size:29 final size:29
Alignment explanation
Indices: 84068195--84068274 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 29
84068185 CTTAATAATC
*
84068195 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
84068225 AACTCGCATACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
84068254 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
84068275 TCTCTCAACC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:84071063 original size:66 final size:68
Alignment explanation
Indices: 84070987--84071173 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
84070977 TAGTACCACT
*
84070987 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
84071049 CACG
65 CACG
84071053 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
84071118 ATCACG
63 ATCACG
84071124 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
84071174 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:84071098 original size:71 final size:71
Alignment explanation
Indices: 84071010--84071173 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84071000 CGATTTGTCT
84071010 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84071075 CTTTCA
66 CTTTCA
84071081 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84071146 CTTTCA
66 CTTTCA
84071152 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
84071174 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:84071211 original size:71 final size:70
Alignment explanation
Indices: 84071010--84071207 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
84071000 CGATTTGTCT
* * *
84071010 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
84071075 CTTTCA
65 CTTTCA
* * *
84071081 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
84071146 CTTTCA
65 CTTTCA
* *
84071152 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
84071208 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:84078626 original size:66 final size:68
Alignment explanation
Indices: 84078550--84078736 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
84078540 TAGTACCACT
*
84078550 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
84078612 CACG
65 CACG
84078616 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
84078681 ATCACG
63 ATCACG
84078687 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
84078737 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:84078661 original size:71 final size:71
Alignment explanation
Indices: 84078573--84078736 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84078563 CGATTTGTCT
84078573 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84078638 CTTTCA
66 CTTTCA
84078644 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
84078709 CTTTCA
66 CTTTCA
84078715 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
84078737 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:84078774 original size:71 final size:70
Alignment explanation
Indices: 84078573--84078770 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
84078563 CGATTTGTCT
* * *
84078573 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
84078638 CTTTCA
65 CTTTCA
* * *
84078644 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
84078709 CTTTCA
65 CTTTCA
* *
84078715 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
84078771 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:84081031 original size:47 final size:47
Alignment explanation
Indices: 84080972--84081093 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
84080962 GCATTGGCAC
*
84080972 TAAGACAAGGATACCATGTATGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
84081019 TAAGATAAGGATACCATGTAAGACCATGTTTGGAATATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
84081066 TAAGAGAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
84081094 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:84081141 original size:54 final size:54
Alignment explanation
Indices: 84081075--84081290 Score: 229
Period size: 53 Copynumber: 4.0 Consensus size: 54
84081065 GTAAGAGAAG
*
84081075 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAA
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
* * * *
84081129 GAAATCATGTAAGACCATGTCAA-ACATGGCATTGATGAGTTACTATAAGGCAAA
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGAAAA
* * * * * * * *
84081183 GGTCTCATGTAAGCCCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
* * * * * * *
84081236 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGAAAA
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
84081290 G
1 G
84081291 GTTCCCGAGT
Statistics
Matches: 134, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
53 59 0.44
54 59 0.44
55 16 0.12
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
Found at i:84087711 original size:28 final size:28
Alignment explanation
Indices: 84087646--84087746 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84087636 ATAGTGAATC
*
84087646 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
84087675 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84087703 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
84087733 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84087747 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84087795 original size:29 final size:29
Alignment explanation
Indices: 84087763--84087835 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
84087753 CTTCGAGCTC
*
84087763 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
** *
84087792 GCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
84087821 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
84087836 ATCTCGTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:84096713 original size:28 final size:28
Alignment explanation
Indices: 84096648--84096748 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84096638 ATAGTGAATC
*
84096648 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
84096677 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84096705 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
84096735 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84096749 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84096797 original size:29 final size:29
Alignment explanation
Indices: 84096765--84096837 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
84096755 CTTCGAGCTC
*
84096765 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
** *
84096794 GCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
84096823 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
84096838 ATCTCGTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:84105115 original size:916 final size:917
Alignment explanation
Indices: 84103343--84105178 Score: 3539
Period size: 916 Copynumber: 2.0 Consensus size: 917
84103333 TGTAACACCC
84103343 CAAACCCGTGACCGCCACCGGATTTGGCCACGTGGTGTTACCGGGCTTACTTCCCTTATTTCTCT
1 CAAACCCGTGACCGCCACCGGATTTGGCCACGTGGTGTTACCGGGCTTACTTCCCTTATTTCTCT
84103408 CTTGGGAGTATTTAGTTTCTGTTTCAGGCAGGCTAGCTAACTGCGTCACTGTCACCTTAAAAATC
66 CTTGGGAGTATTTAGTTTCTGTTTCAGGCAGGCTAGCTAACTGCGTCACTGTCACCTTAAAAATC
84103473 ATATCTCGAGTTCCAGAACTCGAAATAAAAATCTGTAAATTTTCCCCGAATTTAGACTCACATAT
131 ATATCTCGAGTTCCAGAACTCGAAATAAAAATCTGTAAATTTTCCCCGAATTTAGACTCACATAT
84103538 CCATCCATGGATTTATTTCTAGAATTTTTGGTTGGGCCAATTAGTACATTTTATTAGTTAAAGTC
196 CCATCCATGGATTTATTTCTAGAATTTTTGGTTGGGCCAATTAGTACATTTTATTAGTTAAAGTC
* ** *
84103603 ACCCATGTTACAGGGGTCGACTGCTCTGACCTTCGTGCGTTACAACTTAACTATCTCTCTGTACA
261 ACCCATGTTACAGGGGTCGACTGCTCTGACCTTAGCACGTTACAACTTAAATATCTCTCTGTACA
* *
84103668 GGGCTTTAATACTGGTGTTGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTTAAAATATA
326 GGGCTTTAATACTGGTGTCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGAAAATATA
84103733 AGGCATGACTTCTAATTCTTTCTGGATAATTTATAGTAAATTTTCAAAGTCGCGACAGGGGACCC
391 AGGCATGACTTCTAATTCTTTCTGGATAATTTATAGTAAATTTTCAAAGTCGCGACAGGGGACCC
*
84103798 AGAAACCGTTCTGGCCCTGTCTCACGAAAACTTTAATATCTCTCAGTATACTGCTCATATGGTCG
456 AGAAACCGTTCTGGCCCTGTCTCACGAAAACTTTAATATCTCTCAGTATACTGCTCATATGGTAG
* *
84103863 TTTTGTTTCGTCCATATAAAAATAGATTCATCAAGGTTCAATTTAATAATTTATTCACTATTTAA
521 TTTCGTTTCGTCCATATAAAAATAGATTCATCAAGATTCAATTTAATAATTTATTCACTATTTAA
84103928 TTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACAGTTAC
586 TTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACAGTTAC
84103993 TGCAGTAGACTATGCCAATTTCATGAATCTTTCTTTGGCCTTAATCATCCATCATACATGACACA
651 TGCAGTAGACTATGCCAATTTCATGAATCTTTCTTTGGCCTTAATCATCCATCATACATGACACA
84104058 AATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATGGGTTCTAGCATCCCAC
716 AATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATGGGTTCTAGCATCCCAC
84104123 TCGACAACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTTCAACAAAACATA
781 TCGACAACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTTCAACAAAACATA
84104188 ATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAAGATTTCAGCCGGTGTG
846 ATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAAGATTTCAGCCGGTGTG
84104253 ATGACTT
911 ATGACTT
84104260 CAAACCCGTGACCGCCACCGGATTTGGCCACGTGGTGTTACCGGGCTTACTTCCCTTATTTCTCT
1 CAAACCCGTGACCGCCACCGGATTTGGCCACGTGGTGTTACCGGGCTTACTTCCCTTATTTCTCT
84104325 CTTGGGAGTATTTAGTTTCTGTTTCAGGCAGGCTAGCTAACTGCGTCACTGTCACCTTAAAAATC
66 CTTGGGAGTATTTAGTTTCTGTTTCAGGCAGGCTAGCTAACTGCGTCACTGTCACCTTAAAAATC
*
84104390 ATATCTCGAGTTCCAGAACTCGAAATCAAAATCTGTAAATTTTCCCCGAATTTAGACTCACATAT
131 ATATCTCGAGTTCCAGAACTCGAAATAAAAATCTGTAAATTTTCCCCGAATTTAGACTCACATAT
84104455 CCATCCATGGATTTATTTCTAGAATTTTTGGTTGGG-CAATTAGTACATTTTATTAGTTAAAGTC
196 CCATCCATGGATTTATTTCTAGAATTTTTGGTTGGGCCAATTAGTACATTTTATTAGTTAAAGTC
84104519 ACCCATGTTACAGGGGTCGACTGCTCTGACCTTAGCACGTTACAACTTAAATATCTCTCTGTACA
261 ACCCATGTTACAGGGGTCGACTGCTCTGACCTTAGCACGTTACAACTTAAATATCTCTCTGTACA
*
84104584 GGGCTTTAATACTGGTGTCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGAACATATA
326 GGGCTTTAATACTGGTGTCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGAAAATATA
84104649 AGGCATGACTTCTAATTCTTTCTGGATAATTTATAGTAAATTTTCAAAGTCGCGACAGGGGACCC
391 AGGCATGACTTCTAATTCTTTCTGGATAATTTATAGTAAATTTTCAAAGTCGCGACAGGGGACCC
* *
84104714 AGAAACTGTTCTGGCCCTGTCTCACGAGAACTTTAATATCTCTCAGTATACTGCTCATATGGTAG
456 AGAAACCGTTCTGGCCCTGTCTCACGAAAACTTTAATATCTCTCAGTATACTGCTCATATGGTAG
*
84104779 TTTCGTTTCGTCCATATAAAAATAGATTCATCAAGATTCAATTTCATAATTTATTCACTATTTAA
521 TTTCGTTTCGTCCATATAAAAATAGATTCATCAAGATTCAATTTAATAATTTATTCACTATTTAA
84104844 TTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACAGTTAC
586 TTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACAGTTAC
84104909 TGCAGTAGACTATGCCAATTTCATGAATCTTTCTTTGGCCTTAATCATCCATCATACATGACACA
651 TGCAGTAGACTATGCCAATTTCATGAATCTTTCTTTGGCCTTAATCATCCATCATACATGACACA
84104974 AATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATGGGTTCTAGCATCCCAC
716 AATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATGGGTTCTAGCATCCCAC
84105039 TCGACAACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTTCAACAAAACATA
781 TCGACAACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTTCAACAAAACATA
84105104 ATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAAGATTTCAGCCGGTGTG
846 ATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAAGATTTCAGCCGGTGTG
84105169 ATGACTT
911 ATGACTT
84105176 CAA
1 CAA
84105179 CGACGGTTCC
Statistics
Matches: 905, Mismatches: 14, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
916 675 0.75
917 230 0.25
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (917 bp):
CAAACCCGTGACCGCCACCGGATTTGGCCACGTGGTGTTACCGGGCTTACTTCCCTTATTTCTCT
CTTGGGAGTATTTAGTTTCTGTTTCAGGCAGGCTAGCTAACTGCGTCACTGTCACCTTAAAAATC
ATATCTCGAGTTCCAGAACTCGAAATAAAAATCTGTAAATTTTCCCCGAATTTAGACTCACATAT
CCATCCATGGATTTATTTCTAGAATTTTTGGTTGGGCCAATTAGTACATTTTATTAGTTAAAGTC
ACCCATGTTACAGGGGTCGACTGCTCTGACCTTAGCACGTTACAACTTAAATATCTCTCTGTACA
GGGCTTTAATACTGGTGTCGTTTGTTTCTAATGAAACTAGACTCAAAATGGAATCTGAAAATATA
AGGCATGACTTCTAATTCTTTCTGGATAATTTATAGTAAATTTTCAAAGTCGCGACAGGGGACCC
AGAAACCGTTCTGGCCCTGTCTCACGAAAACTTTAATATCTCTCAGTATACTGCTCATATGGTAG
TTTCGTTTCGTCCATATAAAAATAGATTCATCAAGATTCAATTTAATAATTTATTCACTATTTAA
TTCTACTTCTACTATTTTTAGTGATTTTTCAATCTCATCTCACTGCTGCTGTCCGCAACAGTTAC
TGCAGTAGACTATGCCAATTTCATGAATCTTTCTTTGGCCTTAATCATCCATCATACATGACACA
AATTATGGCCACCTTATCAAAATTAAAGTTTCTAAGACTCGTGGCTATGGGTTCTAGCATCCCAC
TCGACAACCACATAGGCCATTTTCACATGGCTTAAAGTTTACAACCCACAGTTCAACAAAACATA
ATAGCCTATACATGCCAAATGTTCTTCAACAACGAAGACAATACCAAAAGATTTCAGCCGGTGTG
ATGACTT
Found at i:84105707 original size:28 final size:28
Alignment explanation
Indices: 84105642--84105742 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84105632 ATAGTGAATC
*
84105642 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
84105671 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84105699 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
84105729 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84105743 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84105791 original size:29 final size:29
Alignment explanation
Indices: 84105759--84105831 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
84105749 CTTCGAGCTC
*
84105759 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
** *
84105788 GCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
84105817 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
84105832 ATCTCGTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:84107976 original size:13 final size:13
Alignment explanation
Indices: 84107958--84107985 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
84107948 TTGCACGGGC
84107958 TGCCATTATCTAT
1 TGCCATTATCTAT
84107971 TGCCATTATCTAT
1 TGCCATTATCTAT
84107984 TG
1 TG
84107986 TGTCAGATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (13 bp):
TGCCATTATCTAT
Found at i:84109772 original size:42 final size:42
Alignment explanation
Indices: 84109711--84109818 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 42
84109701 TGAGATTTAA
* * *
84109711 ATGTAAGACCGTGTTTGGGACATCAACATC-ATATTTGATTTC
1 ATGTAAGACCCTGTCTGGGACAT-AACATCGATATTTGATTAC
* * **
84109753 GTGTAAAACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 ATGTAAGACCCTGTCTGGGACA-TAACATCGATATTTGATTAC
84109796 ATGTAAGACCAC-GTCTGGGACAT
1 ATGTAAGACC-CTGTCTGGGACAT
84109819 TGGCATTGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
42 23 0.43
43 30 0.56
44 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (42 bp):
ATGTAAGACCCTGTCTGGGACATAACATCGATATTTGATTAC
Found at i:84109789 original size:43 final size:42
Alignment explanation
Indices: 84109737--84109824 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 42
84109727 GGGACATCAA
* *
84109737 CATCATATTTGATTTCGTGTAAAACC-CTGTCTGGGACAGTGG
1 CATCATATTTGATTACATGTAAAACCAC-GTCTGGGACAGTGG
* *
84109779 CATCGATATTTGATTACATGTAAGACCACGTCTGGGACATTGG
1 CATC-ATATTTGATTACATGTAAAACCACGTCTGGGACAGTGG
84109822 CAT
1 CAT
84109825 TGTACAAGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 4 0.10
43 35 0.88
44 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (42 bp):
CATCATATTTGATTACATGTAAAACCACGTCTGGGACAGTGG
Found at i:84117838 original size:46 final size:46
Alignment explanation
Indices: 84117788--84117960 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
84117778 TGGTTGAGCA
*
84117788 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
84117834 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
84117881 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
84117927 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84117961 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:84117944 original size:93 final size:93
Alignment explanation
Indices: 84117785--84117955 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
84117775 GGATGGTTGA
* *
84117785 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
84117850 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
84117878 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
84117943 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84117956 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84118222 original size:19 final size:20
Alignment explanation
Indices: 84118185--84118222 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
84118175 ATAAGGTGGT
84118185 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
84118205 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
84118223 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:84122914 original size:34 final size:34
Alignment explanation
Indices: 84122875--84122942 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
84122865 TCACAATAAA
84122875 TCAAATAATAAATTGATCCTATTTAAAATTCTAT
1 TCAAATAATAAATTGATCCTATTTAAAATTCTAT
84122909 TCAAATAATAAATTGATCCTATTTAAAATTCTAT
1 TCAAATAATAAATTGATCCTATTTAAAATTCTAT
84122943 CTGATCTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.12, G:0.03, T:0.41
Consensus pattern (34 bp):
TCAAATAATAAATTGATCCTATTTAAAATTCTAT
Found at i:84123532 original size:18 final size:18
Alignment explanation
Indices: 84123509--84123543 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
84123499 AACAATTTTA
*
84123509 TTTCTTTTCTTTCTCATT
1 TTTCTTATCTTTCTCATT
84123527 TTTCTTATCTTTCTCAT
1 TTTCTTATCTTTCTCAT
84123544 CATTATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTCTTATCTTTCTCATT
Found at i:84123614 original size:15 final size:15
Alignment explanation
Indices: 84123594--84123647 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
84123584 GTCGTCGTCG
84123594 TCTTCATCATAATAA
1 TCTTCATCATAATAA
*
84123609 TCTTCATCGTAATAA
1 TCTTCATCATAATAA
* * * *
84123624 TATTCTTCATCATCA
1 TCTTCATCATAATAA
*
84123639 TCGTCATCA
1 TCTTCATCA
84123648 CCCTTGCCGT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.41
Consensus pattern (15 bp):
TCTTCATCATAATAA
Found at i:84136687 original size:73 final size:73
Alignment explanation
Indices: 84136564--84136711 Score: 278
Period size: 73 Copynumber: 2.0 Consensus size: 73
84136554 TCATAATGAC
*
84136564 TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTATAACGCCCCAAACTTGATCTTTAA
1 TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTATAACACCCCAAACTTGATCTTTAA
84136629 GGAGGACT
66 GGAGGACT
*
84136637 TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTGTAACACCCCAAACTTGATCTTTAA
1 TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTATAACACCCCAAACTTGATCTTTAA
84136702 GGAGGACT
66 GGAGGACT
84136710 TA
1 TA
84136712 GGATTGGCCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (73 bp):
TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTATAACACCCCAAACTTGATCTTTAA
GGAGGACT
Found at i:84138580 original size:77 final size:77
Alignment explanation
Indices: 84138424--84138589 Score: 246
Period size: 77 Copynumber: 2.2 Consensus size: 77
84138414 CGGGACTTTA
* *
84138424 AGCCTGGATATAATACCAGCACAGAGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATG
1 AGCCCGGATATAACACCAGCACAGAGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATG
*
84138489 CCTTCGGGACTT
66 CCTTCGGGAATT
* *
84138501 AGCTCGGATATAACACCAGCAC-GAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCAC-AA
1 AGCCCGGATATAACACCAGCACAG-A-GCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAA
*
84138564 TGCCTTTGGGAATT
64 TGCCTTCGGGAATT
84138578 AGCCCGGATATA
1 AGCCCGGATATA
84138590 TATCTCACAC
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
76 1 0.01
77 45 0.56
78 34 0.43
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (77 bp):
AGCCCGGATATAACACCAGCACAGAGCCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATG
CCTTCGGGAATT
Found at i:84138601 original size:38 final size:39
Alignment explanation
Indices: 84138414--84138589 Score: 250
Period size: 39 Copynumber: 4.5 Consensus size: 39
84138404 ACAAAGCATG
* *
84138414 CGGGACTTTAAGCCTGGATATAATACCAGCAC-AGA-GCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGA-ATGCCTT
*
84138454 CAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
84138493 CGGGACTTAGCTCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
84138532 CGGGACTTAGCCCGGATATAACACCAGCAC-AATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
84138570 TGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
84138590 TATCTCACAC
Statistics
Matches: 126, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 47 0.37
39 74 0.59
40 5 0.04
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:84138654 original size:2 final size:2
Alignment explanation
Indices: 84138647--84138674 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
84138637 TATCGTTCAC
84138647 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84138675 CATAATACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.