Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 281 of 328
Found at i:84139228 original size:2 final size:2
Alignment explanation
Indices: 84139221--84139249 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
84139211 TAAAAATTAC
84139221 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84139250 CTACTAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:84147984 original size:43 final size:42
Alignment explanation
Indices: 84147835--84147980 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 42
84147825 TATGTGTTTT
84147835 CGTGTAAGACCACGTCTAGGAC-GTTGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCACGTCTAGGACAG-TGGCATCGTA-TT-TGA-TTA
* * * * *
84147879 CGTGTAAGATCATGTCTAGGACA-TCAGTATCGTATTTGATTT
1 CGTGTAAGACCACGTCTAGGACAGT-GGCATCGTATTTGATTA
* *
84147921 CGTGTAAGACC-CTGTTTGGGACAGTGGCATCGTTATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGACAGTGGCATCG-TATTTGATTA
*
84147964 CATGTAAGACCACGTCT
1 CGTGTAAGACCACGTCT
84147981 GGGATGTTGG
Statistics
Matches: 81, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
42 25 0.31
43 27 0.33
44 28 0.35
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTAGGACAGTGGCATCGTATTTGATTA
Found at i:84147992 original size:43 final size:42
Alignment explanation
Indices: 84147835--84147993 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
84147825 TATGTGTTTT
84147835 CGTGTAAGACCACGTCTAGGACGTTGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGTA-TT-TGA-TTA
* * * ** * *
84147879 CGTGTAAGATCATGTCTAGGACATCAGTATCGTATTTGATTT
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGATTA
* *
84147921 CGTGTAAGACC-CTGTTTGGGACAG-TGGCATCGTTATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGAC-GTTGGCATCG-TATTTGATTA
* * *
84147964 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
84147994 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
42 25 0.28
43 35 0.39
44 29 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGATTA
Found at i:84151674 original size:30 final size:31
Alignment explanation
Indices: 84151616--84151677 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
84151606 CTTTTCACAC
84151616 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
84151647 TTCATATTTCATATTACTGGG-CGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
84151677 T
1 T
84151678 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 10 0.34
31 19 0.66
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:84151920 original size:23 final size:24
Alignment explanation
Indices: 84151871--84152012 Score: 179
Period size: 23 Copynumber: 6.0 Consensus size: 24
84151861 GCTTTATCAT
*
84151871 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
84151896 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84151919 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
84151941 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
84151966 ATAACTGGGGCA-AAGCCCTTTATT
1 ATAACTGGGGCATAAGCCCTTT-TA
84151990 ATAACT-GGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
84152013 CACTTCCTCC
Statistics
Matches: 107, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
22 15 0.14
23 36 0.34
24 35 0.33
25 21 0.20
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:84151970 original size:70 final size:71
Alignment explanation
Indices: 84151871--84152010 Score: 214
Period size: 70 Copynumber: 2.0 Consensus size: 71
84151861 GCTTTATCAT
*
84151871 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTT-TAATAACTGGGCATAAGC
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTATAATAACTGGGCATAAGC
84151935 CCTTTA
66 CCTTTA
* *
84151941 ATAACTGG-GGCATAAGCC-CTTTATCATAACTGGGGCAAAGCCCTTTATTATAACTGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTT-TAATAACTGGGGCAAAGCCCTTTATAATAACTGGGCATAA
84152004 GCCCTTT
64 GCCCTTT
84152011 TACACTTCCT
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
69 8 0.12
70 34 0.53
71 22 0.34
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (71 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTATAATAACTGGGCATAAGC
CCTTTA
Found at i:84152086 original size:20 final size:20
Alignment explanation
Indices: 84152061--84152127 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
84152051 TTATGAATAC
84152061 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
84152081 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84152101 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84152121 ACCATGT
1 ATCATGT
84152128 TTATAAAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:84152092 original size:11 final size:11
Alignment explanation
Indices: 84152061--84152116 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
84152051 TTATGAATAC
84152061 ATCATGTGCAT
1 ATCATGTGCAT
*
84152072 ATCA--TACAT
1 ATCATGTGCAT
84152081 ATCATGTGCAT
1 ATCATGTGCAT
*
84152092 ATCA--TACAT
1 ATCATGTGCAT
*
84152101 GTCATGTGCAT
1 ATCATGTGCAT
84152112 ATCAT
1 ATCAT
84152117 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:84159740 original size:29 final size:30
Alignment explanation
Indices: 84159707--84159767 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 30
84159697 CTTTTCACAC
*
84159707 TTCATATTTCATA-ACTGGGCCGAAGCCTT
1 TTCATATTTCATATACTGGGCCAAAGCCTT
84159736 TTCATATTTCATATTACTGGGCCAAAGCCTT
1 TTCATATTTCATA-TACTGGGCCAAAGCCTT
84159767 T
1 T
84159768 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 13 0.45
31 16 0.55
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (30 bp):
TTCATATTTCATATACTGGGCCAAAGCCTT
Found at i:84160060 original size:48 final size:49
Alignment explanation
Indices: 84159960--84160104 Score: 201
Period size: 48 Copynumber: 3.0 Consensus size: 49
84159950 GCTTTATCAT
* *
84159960 ATAACTGGAGGCCT-AGCCTCTTT-TAATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTATCATAACTGGGGCATAAGCCCTTTTA
*
84160008 ATAACTGGGGCATAAGCCCTTTAT-A-AACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTT-TA
84160056 ATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTTA
84160105 CACTTCCTCC
Statistics
Matches: 88, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
46 10 0.11
47 18 0.20
48 38 0.43
49 2 0.02
50 20 0.23
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTTA
Found at i:84160067 original size:25 final size:25
Alignment explanation
Indices: 84159951--84160102 Score: 199
Period size: 25 Copynumber: 6.2 Consensus size: 25
84159941 AGCATAGCTG
*
84159951 CTTTATCATATAACTGGAGGCCT-AGCC
1 CTTTATC--ATAACTGG-GGCATAAGCC
*
84159978 TCTTT-TAATAACTGGGGCA-AAGCC
1 -CTTTATCATAACTGGGGCATAAGCC
*
84160002 CTTT-TAATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
84160026 CTTTAT-A-AACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
84160049 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
84160074 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
84160099 CTTT
1 CTTT
84160103 TACACTTCCT
Statistics
Matches: 117, Mismatches: 2, Indels: 13
0.89 0.02 0.10
Matches are distributed among these distances:
23 40 0.34
24 18 0.15
25 54 0.46
27 1 0.01
28 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (25 bp):
CTTTATCATAACTGGGGCATAAGCC
Found at i:84160178 original size:20 final size:20
Alignment explanation
Indices: 84160153--84160219 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
84160143 TTATGAATAC
84160153 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84160173 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
84160193 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
84160213 ACCATGT
1 ATCATGT
84160220 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:84169350 original size:21 final size:21
Alignment explanation
Indices: 84169324--84169366 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
84169314 TTGGGTTTTC
*
84169324 TTTATGTTTTGTATTCATTAT
1 TTTATGTTTTGTATCCATTAT
84169345 TTTATGTTTTGTATCCATTAT
1 TTTATGTTTTGTATCCATTAT
84169366 T
1 T
84169367 CTTCTGAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.07, G:0.09, T:0.65
Consensus pattern (21 bp):
TTTATGTTTTGTATCCATTAT
Found at i:84177015 original size:39 final size:39
Alignment explanation
Indices: 84176955--84177041 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 39
84176945 TTCAGTGATG
* *
84176955 TATATCCGGACTTAGGCTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGCTCCGTAGGCTACGTGCTGGAAA
84176994 TATATCCGGACTTAAGG-TCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTT-AGGCTCCGTAGGCTACGTGCTGGAAA
*
84177033 TATGTCCGG
1 TATATCCGG
84177042 GCTAAAGTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 41 0.93
40 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGCTCCGTAGGCTACGTGCTGGAAA
Found at i:84179069 original size:14 final size:15
Alignment explanation
Indices: 84179032--84179073 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
84179022 AAATATGAAC
84179032 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
84179048 TATA-ATGTGATA-G
1 TATATATGTGAAATG
84179061 TATATATGTGAAA
1 TATATATGTGAAA
84179074 GCTAAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:84179353 original size:43 final size:41
Alignment explanation
Indices: 84179255--84179372 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 41
84179245 TGTGGTTATG
* * *
84179255 TGTAAGACCATGTTTGGGACA-TCGGCATTGTATTTGATTCA
1 TGTAAGACCATGTCTGGGACAGT-GGCATTGTATGTGATGCA
*
84179296 TGTAAGACCCTGTCTGGGACAGTGGCATTGATATGTGATAGCA
1 TGTAAGACCATGTCTGGGACAGTGGCATTG-TATGTGAT-GCA
84179339 TGTAAGACCATGTCTGGGAC-GTTGGCATTGTATG
1 TGTAAGACCATGTCTGGGACAG-TGGCATTGTATG
84179373 ATATGTGTGA
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
41 26 0.38
42 13 0.19
43 29 0.43
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACAGTGGCATTGTATGTGATGCA
Found at i:84186137 original size:23 final size:22
Alignment explanation
Indices: 84186083--84186150 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 22
84186073 TTTTTATTTT
*
84186083 TATTTTTATCTTTATCTTTTTAATT
1 TATTTTTAT-TTTATC-T-TTAATC
84186108 TACTTTTTATTTTATCTTTAATAC
1 TA-TTTTTATTTTATCTTTAAT-C
* *
84186132 TATTTTTACTTTATTTTTA
1 TATTTTTATTTTATCTTTA
84186151 GGTTTTATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
23 20 0.53
24 3 0.08
25 8 0.21
26 7 0.18
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (22 bp):
TATTTTTATTTTATCTTTAATC
Found at i:84190715 original size:25 final size:27
Alignment explanation
Indices: 84190678--84190730 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
84190668 TCAAACATGC
84190678 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
84190704 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
84190730 A
1 A
84190731 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:84199227 original size:46 final size:46
Alignment explanation
Indices: 84199174--84199349 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
84199164 TATTTGGGCA
*
84199174 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
84199220 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * * *
84199267 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
84199313 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84199350 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 69 0.67
47 34 0.33
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:84199329 original size:93 final size:93
Alignment explanation
Indices: 84199170--84199341 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
84199160 AGGATATTTG
* * * *
84199170 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCATTGAG
84199235 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
84199263 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCATTGAG
84199328 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
84199342 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:84208612 original size:18 final size:18
Alignment explanation
Indices: 84208589--84208652 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
84208579 TTTGATCAAA
84208589 CTCTTTTTCTTTCTCATT
1 CTCTTTTTCTTTCTCATT
**
84208607 CTCTTTTTCAATCTCATT
1 CTCTTTTTCTTTCTCATT
* *
84208625 -T-TGTTTC-CTCTC-TT
1 CTCTTTTTCTTTCTCATT
84208639 CCTCTTTTTCTTTC
1 -CTCTTTTTCTTTC
84208653 ATTTCTTTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
14 2 0.06
15 4 0.11
16 6 0.17
17 6 0.17
18 18 0.50
ACGTcount: A:0.06, C:0.30, G:0.02, T:0.62
Consensus pattern (18 bp):
CTCTTTTTCTTTCTCATT
Found at i:84211391 original size:38 final size:38
Alignment explanation
Indices: 84211332--84211439 Score: 198
Period size: 38 Copynumber: 2.8 Consensus size: 38
84211322 TCAATCATGC
*
84211332 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
84211371 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
84211409 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
84211440 ACTGGGCCGA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
38 57 0.84
39 11 0.16
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:84211393 original size:31 final size:31
Alignment explanation
Indices: 84211355--84211456 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
84211345 CCTTTTCATA
84211355 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
84211392 ATTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
84211424 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
84211455 TT
1 TT
84211457 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:84211694 original size:24 final size:24
Alignment explanation
Indices: 84211648--84211742 Score: 131
Period size: 24 Copynumber: 3.9 Consensus size: 24
84211638 GCTTTATCAT
* *
84211648 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTCA
84211673 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTCA
84211697 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTCA
84211721 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
84211743 TTCACTTCCT
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
23 2 0.03
24 50 0.77
25 13 0.20
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTCA
Found at i:84211815 original size:9 final size:9
Alignment explanation
Indices: 84211801--84211857 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
84211791 ATCTCATGTG
84211801 CATATCATA
1 CATATCATA
*
84211810 CATATCATGTG
1 CATATCA--TA
84211821 CATATCATA
1 CATATCATA
* *
84211830 CATGTCATGTG
1 CATATCA--TA
84211841 CATATCATA
1 CATATCATA
84211850 CATATCAT
1 CATATCAT
84211858 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:84211817 original size:20 final size:20
Alignment explanation
Indices: 84211789--84211859 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
84211779 GCATTTATGA
*
84211789 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
84211809 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
84211829 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
84211849 ACATATCATGT
1 ACATATCATGT
84211860 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:84211824 original size:11 final size:11
Alignment explanation
Indices: 84211794--84211848 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
84211784 TATGAACATC
84211794 TCATGTGCATA
1 TCATGTGCATA
*
84211805 TCA--TACATA
1 TCATGTGCATA
84211814 TCATGTGCATA
1 TCATGTGCATA
* *
84211825 TCA--TACATG
1 TCATGTGCATA
84211834 TCATGTGCATA
1 TCATGTGCATA
84211845 TCAT
1 TCAT
84211849 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:84211924 original size:25 final size:25
Alignment explanation
Indices: 84211896--84211943 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
84211886 ATATATAAAC
* *
84211896 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
84211921 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
84211944 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:84213167 original size:27 final size:27
Alignment explanation
Indices: 84213105--84213182 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
84213095 GGGCATATTC
*
84213105 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATATAGGGGTATTACG
* *
84213132 GTCACTTTACCCTATAGGGGCT-TTACG
1 GTCATTTTACCATATAGGGG-TATTACG
* * *
84213159 GTCTTTTTACCTTTTAGGGGTATT
1 GTCATTTTACCATATAGGGGTATT
84213183 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCATATAGGGGTATTACG
Found at i:84213253 original size:27 final size:27
Alignment explanation
Indices: 84213223--84213274 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
84213213 GTAAATCAAC
84213223 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
84213250 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
84213275 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:84213403 original size:81 final size:81
Alignment explanation
Indices: 84213283--84213437 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 81
84213273 TTTAGAAAGT
** **
84213283 CAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTCTACAAACTGAGGGTATTT
1 CAAGGGTATTTCTGTAACTTTACAAATCAGGGGTATTTTGGTAATTCTACAAACCAAGGGTATTT
*
84213348 CGGTAATTTCACAAAC
66 CAGTAATTTCACAAAC
* * *
84213364 CAAGGGTATTT-TGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATT
1 CAAGGGTATTTCT-GTAACTTTACAAATCAGGGGTATTTTGGTAATTCTACAAACCAAGGGTATT
*
84213428 TTAGTAATTT
65 TCAGTAATTT
84213438 TGTAAATCGA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.02
81 63 0.98
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTCTGTAACTTTACAAATCAGGGGTATTTTGGTAATTCTACAAACCAAGGGTATTT
CAGTAATTTCACAAAC
Found at i:84213437 original size:54 final size:54
Alignment explanation
Indices: 84213313--84213438 Score: 191
Period size: 54 Copynumber: 2.3 Consensus size: 54
84213303 TGTAAATCAG
*
84213313 GGGTATTTTGGTAATTCTACAAACTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGGTAATTTCACAAACCAA
* * *
84213367 GGGTATTTTGGTAATTTTACAAA-TTAGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGA-GGGTATTTCGGTAATTTCACAAACCAA
*
84213421 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
84213439 GTAAATCGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.03
54 64 0.97
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:84213450 original size:27 final size:27
Alignment explanation
Indices: 84213231--84213506 Score: 162
Period size: 27 Copynumber: 10.1 Consensus size: 27
84213221 ACAAACCAAA
* * * *
84213231 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
84213258 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * *
84213287 GGTATTTCT-GTAACTTTGTAAATCAGG
1 GGTATTT-TAGTAATTTTATAAATCAAG
* * * *
84213314 GGTATTTTGGTAATTCTACAAA-CTGAG
1 GGTATTTTAGTAATTTTATAAATC-AAG
** * * *
84213341 GGTATTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * * *
84213368 GGTATTTTGGTAATTTTACAAATTAGG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
84213395 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
84213422 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** * *
84213449 GGTAAAATAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** * *
84213476 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
84213503 GGTA
1 GGTA
84213507 AAACGGTAAT
Statistics
Matches: 203, Mismatches: 39, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
26 2 0.01
27 171 0.84
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:84213451 original size:81 final size:80
Alignment explanation
Indices: 84213231--84213452 Score: 205
Period size: 81 Copynumber: 2.7 Consensus size: 80
84213221 ACAAACCAAA
** ** *
84213231 GGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTC
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTT-TAGTAATTTTT--AAA-TCAAGGGTATTTC
**
84213295 TGTAACTTTGTAAATCAGG
62 TGTAACTTTACAAATCAGG
* ** ** ** *
84213314 GGTATTTTGGTAATTCTACAAACTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT-TGG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTT-TTAAATCAAGGGTATTTCT-G
* *
84213378 TAATTTTACAAATTAGG
64 TAACTTTACAAATCAGG
*
84213395 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT-TAAATCAAGGGTA
84213453 AAATAGTAAT
Statistics
Matches: 109, Mismatches: 26, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
80 1 0.01
81 73 0.67
82 3 0.03
83 32 0.29
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTTAAATCAAGGGTATTTCTGTA
ACTTTACAAATCAGG
Found at i:84213479 original size:81 final size:81
Alignment explanation
Indices: 84213303--84213560 Score: 219
Period size: 81 Copynumber: 3.2 Consensus size: 81
84213293 TCTGTAACTT
* * *** * *
84213303 TGTAAATCAGGGGTATTTTGGTAATTCTACAAACTGAGGGTATTTCGGTAATTTCACAAACCAAG
1 TGTAAATCAAGGGTATTTTGGTAATTCTACAAACCGAGGGTATTTCGGTAATTTTGTAAATCGAG
*** *
84213368 GGTATTTTGGTAATTT
66 GGTAAAATGGTAATTC
** * * * * **
84213384 TACAAATTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAG
1 TGTAAATCAAGGGTATTTTGGTAATTCTACAAACCGAGGGTATTTCGGTAATTTTGTAAATCGAG
*
84213449 GGTAAAATAGTAATTC
66 GGTAAAATGGTAATTC
*** * * * *** *
84213465 TGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAG
1 TGTAAATCAAGGGTATTTTGGTAATTCTACAAACCGAGGGTATTTCGGTAATTTTGTAAATCGAG
*
84213530 GGTAAAACGGTAATTC
66 GGTAAAATGGTAATTC
* *
84213546 TGTAAGTCGAGGGTA
1 TGTAAATCAAGGGTA
84213561 AAACGATAAT
Statistics
Matches: 137, Mismatches: 40, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 137 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.33
Consensus pattern (81 bp):
TGTAAATCAAGGGTATTTTGGTAATTCTACAAACCGAGGGTATTTCGGTAATTTTGTAAATCGAG
GGTAAAATGGTAATTC
Found at i:84213507 original size:27 final size:27
Alignment explanation
Indices: 84213431--84213722 Score: 356
Period size: 27 Copynumber: 10.8 Consensus size: 27
84213421 GGGTATTTTA
* **
84213431 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
84213458 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
84213485 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
84213512 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
84213539 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
84213566 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * *
84213593 GTAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
84213620 GTAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
84213647 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
84213674 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
84213701 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
84213723 CTTTGGTTAT
Statistics
Matches: 233, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 231 0.99
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:84213561 original size:81 final size:81
Alignment explanation
Indices: 84213431--84213722 Score: 410
Period size: 81 Copynumber: 3.6 Consensus size: 81
84213421 GGGTATTTTA
* ** * * *
84213431 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAAT-AGTAATTCTAT
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGA-TAATTATGT
84213495 AAATC-GAGGGTAAAACG
65 AAATCAG-GGGTAAAACG
* * *
84213512 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTA
84213577 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
* * *
84213593 GTAATTATGTAAATTGGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGATAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTA
84213658 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
* *
84213674 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTGTAAATCGGGGGTA
1 GTAATTATGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTA
84213723 CTTTGGTTAT
Statistics
Matches: 192, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
81 190 0.99
82 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (81 bp):
GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTATGTA
AATCAGGGGTAAAACG
Found at i:84213763 original size:27 final size:26
Alignment explanation
Indices: 84213731--84213817 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
84213721 TACTTTGGTT
84213731 ATTTTACAAGTCGAAGGTATTTCGGTA
1 ATTTTACAA-TCGAAGGTATTTCGGTA
* * *
84213758 AATTTACAAATCGAGGGTATTTCAGTA
1 ATTTTAC-AATCGAAGGTATTTCGGTA
* * *
84213785 TTTTTACAAACTAAGGGTATTTCGGTA
1 ATTTTACAATCGAA-GGTATTTCGGTA
84213812 ATTTTA
1 ATTTTA
84213818 GTAAACTAAA
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
26 4 0.08
27 42 0.88
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (26 bp):
ATTTTACAATCGAAGGTATTTCGGTA
Found at i:84213824 original size:28 final size:27
Alignment explanation
Indices: 84213746--84213826 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
84213736 ACAAGTCGAA
* *
84213746 GGTATTTCGGTAAATTTACAAA-TCGAG
1 GGTATTTCGGTAATTTTACAAACT-AAG
* *
84213773 GGTATTTCAGTATTTTTACAAACTAAG
1 GGTATTTCGGTAATTTTACAAACTAAG
*
84213800 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCGGTAATTTTA-CAAACTAA
84213827 AGTATTCTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
27 37 0.82
28 8 0.18
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAACTAAG
Found at i:84214878 original size:87 final size:87
Alignment explanation
Indices: 84214732--84214902 Score: 315
Period size: 87 Copynumber: 2.0 Consensus size: 87
84214722 CCTTTCATTG
*
84214732 CACAATTAAATACCTATATAAAACCTCCTTACAAACCCACACTCGAGGCCCAATACTTCTAGGCC
1 CACAATTAAATACCTATATAAAACCTCCTTACAAACCCACACTCAAGGCCCAATACTTCTAGGCC
84214797 CAAATTCAGGGTGTTACAATGA
66 CAAATTCAGGGTGTTACAATGA
*
84214819 CACAATTAAATACCTATATAAAACCTCCTTACGAACCCACACTCAAGGCCCAATACTTCTAGGCC
1 CACAATTAAATACCTATATAAAACCTCCTTACAAACCCACACTCAAGGCCCAATACTTCTAGGCC
*
84214884 CAAATTTAGGGTGTTACAA
66 CAAATTCAGGGTGTTACAA
84214903 GAATAATCAT
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.37, C:0.29, G:0.11, T:0.23
Consensus pattern (87 bp):
CACAATTAAATACCTATATAAAACCTCCTTACAAACCCACACTCAAGGCCCAATACTTCTAGGCC
CAAATTCAGGGTGTTACAATGA
Found at i:84218441 original size:17 final size:17
Alignment explanation
Indices: 84218421--84218463 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
84218411 CAAATTGGGT
* *
84218421 TGTGGGCCACATGGGCG
1 TGTGGGCCACAAGGGCA
*
84218438 TGTGGACCCACAAGGGCA
1 TGTGG-GCCACAAGGGCA
84218456 TGTGGGCC
1 TGTGGGCC
84218464 TATTATACTG
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.16, C:0.26, G:0.42, T:0.16
Consensus pattern (17 bp):
TGTGGGCCACAAGGGCA
Found at i:84223194 original size:29 final size:29
Alignment explanation
Indices: 84223162--84223239 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
84223152 ATACCCTCCG
** *
84223162 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
84223191 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
84223220 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
84223240 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:84231015 original size:29 final size:29
Alignment explanation
Indices: 84230983--84231060 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
84230973 ATACCCTCCG
** *
84230983 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
84231012 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
84231041 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
84231061 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:84233128 original size:29 final size:29
Alignment explanation
Indices: 84233095--84233167 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
84233085 GCTGGTTTTC
* *
84233095 GGCACTAAGTGTGCGGGCTTGAAA-TGCAT
1 GGCACTAAGTGTGCGAG-TTGAAAGTACAT
*
84233124 GGCACTAAGTGTGCGAGTTTAAAGTACAT
1 GGCACTAAGTGTGCGAGTTGAAAGTACAT
84233153 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
84233168 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGTTGAAAGTACAT
Found at i:84241024 original size:29 final size:29
Alignment explanation
Indices: 84240985--84241059 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
84240975 GGTTGAGAGA
* *
84240985 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
84241014 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
84241043 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
84241060 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:84246087 original size:40 final size:40
Alignment explanation
Indices: 84246043--84246230 Score: 326
Period size: 40 Copynumber: 4.7 Consensus size: 40
84246033 GCTACTTGCT
84246043 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
84246083 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
84246123 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
84246163 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
84246202 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
84246231 CATCCGAATA
Statistics
Matches: 141, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 105 0.74
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:84246229 original size:79 final size:80
Alignment explanation
Indices: 84246010--84246230 Score: 333
Period size: 80 Copynumber: 2.8 Consensus size: 80
84246000 AAACCAAGTA
* * * *
84246010 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
84246073 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* *
84246089 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
84246154 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
84246169 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
84246231 CATCCGAATA
Statistics
Matches: 131, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 62 0.47
80 68 0.52
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:84254173 original size:40 final size:40
Alignment explanation
Indices: 84254129--84254314 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
84254119 GCTACTTGCT
84254129 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
84254169 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
84254209 CAAATGCCTTCGGGACTTAGCCC--ATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
84254247 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
84254286 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
84254315 CATCCGAATA
Statistics
Matches: 136, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
37 8 0.06
38 29 0.21
39 24 0.18
40 74 0.54
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:84254300 original size:77 final size:79
Alignment explanation
Indices: 84254096--84254309 Score: 294
Period size: 77 Copynumber: 2.7 Consensus size: 79
84254086 AAACCAAGTA
* * * * *
84254096 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGACTTAGCCC-GATATA
84254159 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* *
84254175 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-ATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGATATAGT
84254239 AACTCGCACAAATG
66 AACTCGCACAAATG
*
84254253 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
84254310 GTTATCATCC
Statistics
Matches: 122, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
76 1 0.01
77 43 0.35
78 28 0.23
79 13 0.11
80 37 0.30
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGATATAGT
AACTCGCACAAATG
Found at i:84256203 original size:27 final size:26
Alignment explanation
Indices: 84256138--84256203 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
84256128 TGCCTGGACA
*
84256138 CCTTATTGATAAAATGACTAATTTGC
1 CCTTATTGGTAAAATGACTAATTTGC
* * *
84256164 CCTTACGTAGTAAAATGACTATTTTGC
1 CCTTA-TTGGTAAAATGACTAATTTGC
84256191 CCTTATATGGTAA
1 CCTTAT-TGGTAA
84256204 GACTATTGTT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (26 bp):
CCTTATTGGTAAAATGACTAATTTGC
Found at i:84264757 original size:43 final size:43
Alignment explanation
Indices: 84264694--84264860 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
84264684 AGCTCGTACA
* * * *
84264694 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * ** * *
84264736 ATGCCAACGTCCCAGAAATGGTCTTACACAAAATCATAAAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA-CATATCG
* * *
84264779 ATGCTAATGTCCCAGGCATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
*
84264822 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
84264861 CTCAATAATC
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 89 0.89
44 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:84272999 original size:10 final size:10
Alignment explanation
Indices: 84272984--84273009 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
84272974 ATGAATGATC
84272984 AAAATTAATT
1 AAAATTAATT
84272994 AAAATTAATT
1 AAAATTAATT
84273004 AAAATT
1 AAAATT
84273010 CAACATGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTAATT
Found at i:84282286 original size:40 final size:40
Alignment explanation
Indices: 84282207--84282450 Score: 343
Period size: 40 Copynumber: 6.1 Consensus size: 40
84282197 TGGGATTTAA
* * *
84282207 CCGGATATAGCT-ACTCGCTC-AATTCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84282246 CCGGATATCGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
84282286 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84282326 CCGGATATAGTAACTCGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84282366 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84282406 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
84282447 CCGG
1 CCGG
84282451 TTATCATCCA
Statistics
Matches: 187, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 16 0.09
40 142 0.76
41 24 0.13
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84288827 original size:3 final size:3
Alignment explanation
Indices: 84288819--84288859 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
84288809 CTCTATGGGA
* *
84288819 TCT TCT TCT TTT TCT TTT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
84288860 GAGATCCTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:84290539 original size:16 final size:15
Alignment explanation
Indices: 84290514--84290548 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
84290504 AAAATTGATA
*
84290514 ATAATTAATATATATT
1 ATAATAAATATA-ATT
84290530 ATAATAAATATAATT
1 ATAATAAATATAATT
84290545 ATAA
1 ATAA
84290549 CTAGTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:84293952 original size:26 final size:26
Alignment explanation
Indices: 84293916--84293969 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
84293906 ATTGCGGTTT
84293916 AAATCCCTTTTGATTAGCTTCTAGCA
1 AAATCCCTTTTGATTAGCTTCTAGCA
84293942 AAATCCCTTTTGATTAGCTTCTAGCA
1 AAATCCCTTTTGATTAGCTTCTAGCA
84293968 AA
1 AA
84293970 GCTAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (26 bp):
AAATCCCTTTTGATTAGCTTCTAGCA
Found at i:84294886 original size:21 final size:20
Alignment explanation
Indices: 84294855--84294894 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
84294845 CCTTTGAAAC
*
84294855 AGGGCACACGCCTGTGTGAA
1 AGGGCACACGCCCGTGTGAA
84294875 AGGGCAACACGCCCGTGTGA
1 AGGGC-ACACGCCCGTGTGA
84294895 TCACTAAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGAA
Found at i:84296152 original size:46 final size:46
Alignment explanation
Indices: 84296046--84296261 Score: 238
Period size: 46 Copynumber: 4.6 Consensus size: 46
84296036 ATGCCGACCC
* * *
84296046 CATGTCCCAGACATGGTCTTACACTAGCTTGTCCATCGT-GAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGC-TCT-CATC-TCAAGGCTGATG
* *
84296095 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAACGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCTGATG
*
84296141 CATGTCCCAGACATGTCTTACACTGGCT-TCAATATCTCAAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC---ATCTCAAGGCTGATG
* * * * * *
84296189 CATGTCCCAGATAGGTCTTACACTGGCTCTCATATTATGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCTGATG
*
84296235 CATGTCCCAGACATGTCTTATACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
84296262 ACACATATCA
Statistics
Matches: 145, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
45 3 0.02
46 72 0.50
47 2 0.01
48 52 0.36
49 16 0.11
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCTGATG
Found at i:84296208 original size:94 final size:94
Alignment explanation
Indices: 84296046--84296261 Score: 263
Period size: 94 Copynumber: 2.3 Consensus size: 94
84296036 ATGCCGACCC
*** * *
84296046 CATGTCCCAGACATGGTCTTACACTAGCTTGTCCATCGTGAGGCCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACAT-GTCTTACACTAGCTTCAACATCGTAAGGCCGATGCATGTCCCAGACAGGT
*
84296111 CTTACACTAGCTCTCATCTCAACGCTAATG
65 CTTACACTAGCTCTCATATCAACGCTAATG
* * * *
84296141 CATGTCCCAGACATGTCTTACACTGGCTTCAATATC-TCAAGGCTGATGCATGTCCCAGATAGGT
1 CATGTCCCAGACATGTCTTACACTAGCTTCAACATCGT-AAGGCCGATGCATGTCCCAGACAGGT
* * ** *
84296205 CTTACACTGGCTCTCATATTATGGCTGATG
65 CTTACACTAGCTCTCATATCAACGCTAATG
*
84296235 CATGTCCCAGACATGTCTTATACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
84296262 ACACATATCA
Statistics
Matches: 103, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
93 1 0.01
94 88 0.85
95 14 0.14
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCAACATCGTAAGGCCGATGCATGTCCCAGACAGGTC
TTACACTAGCTCTCATATCAACGCTAATG
Found at i:84301476 original size:40 final size:40
Alignment explanation
Indices: 84301417--84301621 Score: 223
Period size: 40 Copynumber: 5.1 Consensus size: 40
84301407 CATTGGAATG
* * *
84301417 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
84301457 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
84301497 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
84301537 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
84301577 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
84301617 ATATC
1 ATATC
84301622 AGGTTAAATT
Statistics
Matches: 138, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 133 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:84308332 original size:39 final size:39
Alignment explanation
Indices: 84308181--84308374 Score: 253
Period size: 40 Copynumber: 4.9 Consensus size: 39
84308171 CGTTCAAACA
* * * * * *
84308181 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
84308221 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
* * * *
84308261 CCTTCGGAGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGG-GCTTAGCCCGGATATCACAACTCGCACAATTG
84308301 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
*
84308340 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
84308375 TTCATACACA
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 62 0.45
40 74 0.54
41 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:84310263 original size:17 final size:17
Alignment explanation
Indices: 84310241--84310276 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
84310231 AGCATCGATG
84310241 CATCGAAACATGAAAGA
1 CATCGAAACATGAAAGA
*
84310258 CATCGAATCATGAAAGA
1 CATCGAAACATGAAAGA
84310275 CA
1 CA
84310277 AATCTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.50, C:0.19, G:0.17, T:0.14
Consensus pattern (17 bp):
CATCGAAACATGAAAGA
Found at i:84315671 original size:421 final size:421
Alignment explanation
Indices: 84314883--84315699 Score: 1230
Period size: 421 Copynumber: 1.9 Consensus size: 421
84314873 CAGGCTGGAA
* * * *
84314883 AAACTGCGTCACTGTCACCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCATA
1 AAACTGCATCACTGTCACCTTAAAAAGCATATCTCGAGTTTCAAAACTCGGAAACTGATTCCATA
*
84314948 AATTTTCCCTGAATTTAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTTGTTCTGGC
66 AATTTTCCCTGAATTTAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTTGTTCGGGC
* * *
84315013 CAATTGGTACAGTTTATTAGTTAAAGTCACCCATGTTACAGGGATCGACTGCTCTGACCTTCGCG
131 CAATTGGTACAGTTTATTAGTTAAAGTCACCCATGTTACAGGGATCAACTACACTGACCTTCGCG
* * * * * *
84315078 CGGTATAACTTTAATATCTCTCTGTACAGGGCTTTAGTGCTGGTGCCGTTTATTTCTAATGAAAC
196 CGGTACAACTTGAATATCTCTCTGTACAGGGCTTTAATACTGATGACGTTTATTTCTAATGAAAC
* * * *
84315143 TAGACTCAAAATGGAATCTGTACATATAAGGTATATCTCCTAATTCTTTTTGGATAATTTATAGT
261 TAGACTCAAAATGGAATCTGCACATATAAGGCATATCTCCTAATTCATTCTGGATAATTTATAGT
* * * *
84315208 GAATTTTTAAAGTTGCGACAGGGAACCCAGAAACCATTCTGGCCCTGTCTCACAATAGCTTTAAT
326 AAATTTTCAAAGTTGCGACAGGGAACCCAGAAACCATTCTGGCCCTGTCTCACAAGAACTTTAAT
84315273 ATCTCTTAACCTGTCTCACAATAGCTTTAAT
391 ATCTCTTAACCTGTCTCACAATAGCTTTAAT
* ** * *
84315304 AAACTGCATCGCTGTCGTCTTAAAAAGCATATCTCGAGTTTCACAACTCGGAAACTGATTCCGTA
1 AAACTGCATCACTGTCACCTTAAAAAGCATATCTCGAGTTTCAAAACTCGGAAACTGATTCCATA
*
84315369 AATTTTCCCTGAATTTAGACTCATATATCCATCCATGGATTTATTTTTAGAATTTTTGGTT-GGG
66 AATTTTCCCTGAATTTAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTT-GTTCGGG
*
84315433 CCAATTGGTACAGTTTATTAGTTAAAGTCACCCATGTTACAGGGGTCAACTACACTGACCTTCGC
130 CCAATTGGTACAGTTTATTAGTTAAAGTCACCCATGTTACAGGGATCAACTACACTGACCTTCGC
* *
84315498 GCGTTACAACTTGAATATCTCTCTGTACAGGG-TTTCAATACTGATGACGTTTGTTTCTAATGAA
195 GCGGTACAACTTGAATATCTCTCTGTACAGGGCTTT-AATACTGATGACGTTTATTTCTAATGAA
*
84315562 ACTAGACTCAAAAATGGAATCTGCACATATAAGGCATGA-CTTCTAATTCATTCTGGATAATTTA
259 ACTAGACTC-AAAATGGAATCTGCACATATAAGGCAT-ATCTCCTAATTCATTCTGGATAATTTA
* * * *
84315626 TGGTAAATTTTCAAA-TT-CGCACAGGGGACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAACT
322 TAGTAAATTTTCAAAGTTGCG-ACAGGGAACCCAGAAACCATTCTGGCCCTGTCTCACAAGAACT
84315689 TTAATATCTCT
386 TTAATATCTCT
84315700 CGGTATACTA
Statistics
Matches: 355, Mismatches: 36, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
420 5 0.01
421 287 0.81
422 62 0.17
423 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (421 bp):
AAACTGCATCACTGTCACCTTAAAAAGCATATCTCGAGTTTCAAAACTCGGAAACTGATTCCATA
AATTTTCCCTGAATTTAGACTCATATATCCATCCATGGATTTATTTCTAGAATTTTTGTTCGGGC
CAATTGGTACAGTTTATTAGTTAAAGTCACCCATGTTACAGGGATCAACTACACTGACCTTCGCG
CGGTACAACTTGAATATCTCTCTGTACAGGGCTTTAATACTGATGACGTTTATTTCTAATGAAAC
TAGACTCAAAATGGAATCTGCACATATAAGGCATATCTCCTAATTCATTCTGGATAATTTATAGT
AAATTTTCAAAGTTGCGACAGGGAACCCAGAAACCATTCTGGCCCTGTCTCACAAGAACTTTAAT
ATCTCTTAACCTGTCTCACAATAGCTTTAAT
Found at i:84316705 original size:38 final size:39
Alignment explanation
Indices: 84316625--84316786 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
84316615 TTATGTAACC
* *
84316625 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
84316665 CGCACAATTGCCTTCGGG-TTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
84316703 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
84316742 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
84316781 CGCACA
1 CGCACA
84316787 TTCATACACA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:84316736 original size:77 final size:79
Alignment explanation
Indices: 84316625--84316775 Score: 270
Period size: 77 Copynumber: 1.9 Consensus size: 79
84316615 TTATGTAACC
84316625 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGG-TTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
84316689 CGGATATCATAGCT
66 CGGATATCATAGCT
* *
84316703 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
84316767 CGGATATCA
66 CGGATATCA
84316776 CAATTCGCAC
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
77 38 0.54
78 32 0.46
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:84320067 original size:22 final size:23
Alignment explanation
Indices: 84320026--84320069 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
84320016 TCTATCAAAA
84320026 ATTATCAAAATTAATAAAAATTT
1 ATTATCAAAATTAATAAAAATTT
* *
84320049 ATTAT-AAAGTTAATTAAAATT
1 ATTATCAAAATTAATAAAAATT
84320070 AAAAAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
ATTATCAAAATTAATAAAAATTT
Found at i:84323145 original size:40 final size:40
Alignment explanation
Indices: 84323100--84323266 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
84323090 CGGAATATAA
84323100 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
84323140 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
84323180 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
84323220 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
84323259 CCGGATAT
1 CCGGATAT
84323267 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:84327995 original size:68 final size:70
Alignment explanation
Indices: 84327923--84328120 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
84327913 ACACCCTGTA
* * * *
84327923 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
84327985 ATAAAT
65 ATAAAT
*
84327991 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
84328056 ATAAAT
65 ATAAAT
*
84328062 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
84328121 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:84328034 original size:41 final size:41
Alignment explanation
Indices: 84327989--84328106 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
84327979 TGAAAGATAA
84327989 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
84328030 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84328060 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84328101 ATGTAG
1 ATGTAG
84328107 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:84328046 original size:71 final size:71
Alignment explanation
Indices: 84327957--84328120 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84327947 GAGATGTATC
84327957 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84328022 AGGACA
66 AGGACA
84328028 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84328093 AGGACA
66 AGGACA
84328099 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84328121 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84335544 original size:68 final size:70
Alignment explanation
Indices: 84335472--84335669 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
84335462 ACACCCTGTA
* * * *
84335472 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
84335534 ATAAAT
65 ATAAAT
*
84335540 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
84335605 ATAAAT
65 ATAAAT
*
84335611 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
84335670 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:84335583 original size:41 final size:41
Alignment explanation
Indices: 84335538--84335655 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
84335528 TGAAAGATAA
84335538 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
84335579 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84335609 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
84335650 ATGTAG
1 ATGTAG
84335656 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:84335595 original size:71 final size:71
Alignment explanation
Indices: 84335506--84335669 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
84335496 GAGATGTATC
84335506 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84335571 AGGACA
66 AGGACA
84335577 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
84335642 AGGACA
66 AGGACA
84335648 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
84335670 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:84340772 original size:53 final size:54
Alignment explanation
Indices: 84340704--84340903 Score: 199
Period size: 53 Copynumber: 3.7 Consensus size: 54
84340694 TTTCCTTTTT
* * * **
84340704 GAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
84340757 GAACTCACCAATGCCATGCCTTGGCATAGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * * * *
84340811 GTAACTCATCAATGCCGTG-TTTCGACATGGTCTTACATGTTTTCCTTTCCTTATA
1 G-AACTCACCAATGCCATGCCTT-GACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
84340866 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATG
84340904 ATATTTTTAT
Statistics
Matches: 120, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 42 0.35
54 33 0.28
55 41 0.34
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:84340844 original size:55 final size:54
Alignment explanation
Indices: 84340715--84340903 Score: 197
Period size: 55 Copynumber: 3.5 Consensus size: 54
84340705 AACTTACCAT
* ** *
84340715 TGCCATGTCTTGACATGGTCTTATGTGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTCATCAA
* * *
84340768 TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTCATCAA
* * * * *
84340823 TGCCGTG-TTTCGACATGGTCTTACATGTTTTCCTTT-CCTTATAGAACTTATCAA
1 TGCCATGCCTT-GACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
*
84340877 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
84340904 ATATTTTTAT
Statistics
Matches: 112, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
52 2 0.02
53 33 0.29
54 33 0.29
55 39 0.35
56 5 0.04
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:84341184 original size:44 final size:44
Alignment explanation
Indices: 84341103--84341187 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
84341093 ATCCTTAACC
* * *
84341103 GTCAATTCTTCCTTAAATGCCATGTTAGGAACGTGGAATTTTCT
1 GTCAATTCTTCCTTAAATGCCATGGTAGCAACATGGAATTTTCT
*
84341147 GTCAATTCTTCCTTAATTGCCATGGTA-CAACCATGGAATTT
1 GTCAATTCTTCCTTAAATGCCATGGTAGCAA-CATGGAATTT
84341188 GAGATATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (44 bp):
GTCAATTCTTCCTTAAATGCCATGGTAGCAACATGGAATTTTCT
Found at i:84348273 original size:50 final size:50
Alignment explanation
Indices: 84348198--84348479 Score: 366
Period size: 50 Copynumber: 5.8 Consensus size: 50
84348188 GATGTTGATA
* *
84348198 CCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCAGTGCCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATG
** * *
84348248 CCATGTTCCAAACATGGTCTTACACTAGC-C-CACCTGTCGAG-GTCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATC-AGTGCCGATG
* *
84348296 CCATG-TCTCAGACATGATCTTACACTAGCTCTCATATATCAGTGCCGATG
1 CCATGTTC-CAAACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATG
* *
84348346 CCATGTTCCAAACATGGTCTTACACTAGC-C-CACATGTCAAG-GCCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATC-AGTGCCGATG
* *
84348394 CCATGTTCCACACATGGTCTTACACTAGCTCTCATATATCGGTGCCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATG
84348444 CCATGTTCCAAACATGGTCTTACACTAGC-C-CATATA
1 CCATGTTCCAAACATGGTCTTACACTAGCTCTCATATA
84348480 ACCCTAGTAT
Statistics
Matches: 201, Mismatches: 21, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
47 2 0.01
48 82 0.41
49 12 0.06
50 103 0.51
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (50 bp):
CCATGTTCCAAACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATG
Found at i:84348367 original size:98 final size:98
Alignment explanation
Indices: 84348198--84348475 Score: 459
Period size: 98 Copynumber: 2.8 Consensus size: 98
84348188 GATGTTGATA
* *
84348198 CCATGTCCCAAACATGGTCTTACACTGGCTCTCATATATCAGTGCCGATGCCATGTTCCAAACAT
1 CCATGTCTCAAACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATGCCATGTTCCAAACAT
* * *
84348263 GGTCTTACACTAGCCCACCTGTCGAGGTCGATG
66 GGTCTTACACTAGCCCACATGTCAAGGCCGATG
* *
84348296 CCATGTCTCAGACATGATCTTACACTAGCTCTCATATATCAGTGCCGATGCCATGTTCCAAACAT
1 CCATGTCTCAAACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATGCCATGTTCCAAACAT
84348361 GGTCTTACACTAGCCCACATGTCAAGGCCGATG
66 GGTCTTACACTAGCCCACATGTCAAGGCCGATG
* *
84348394 CCATGT-TCCACACATGGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCATGTTCCAAACA
1 CCATGTCT-CAAACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATGCCATGTTCCAAACA
84348458 TGGTCTTACACTAGCCCA
65 TGGTCTTACACTAGCCCA
84348476 TATAACCCTA
Statistics
Matches: 169, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
97 1 0.01
98 168 0.99
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (98 bp):
CCATGTCTCAAACATGGTCTTACACTAGCTCTCATATATCAGTGCCGATGCCATGTTCCAAACAT
GGTCTTACACTAGCCCACATGTCAAGGCCGATG
Found at i:84351733 original size:25 final size:24
Alignment explanation
Indices: 84351705--84351760 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
84351695 CCTAATAAAA
*
84351705 AATAATAGATAATTATATAATATAT
1 AATAATAGATAATGA-ATAATATAT
* *
84351730 AATAAAAATATAATGAATAATATAT
1 AAT-AATAGATAATGAATAATATAT
84351755 -ATAATA
1 AATAATA
84351761 AAATGTATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 3 0.12
24 2 0.08
25 12 0.46
26 9 0.35
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (24 bp):
AATAATAGATAATGAATAATATAT
Found at i:84351734 original size:18 final size:16
Alignment explanation
Indices: 84351705--84351832 Score: 66
Period size: 15 Copynumber: 8.6 Consensus size: 16
84351695 CCTAATAAAA
84351705 AATAATAGATAATTATAT
1 AATAATA-ATAA-TATAT
*
84351723 AATATATAATAA-AAAT
1 AATA-ATAATAATATAT
84351739 -ATAATGAATAATATAT
1 AATAAT-AATAATATAT
*
84351755 -ATAATAA-AATGTAT
1 AATAATAATAATATAT
*
84351769 -A-AATCA-AA-ATAT
1 AATAATAATAATATAT
*
84351781 -ATAATAA-AATGTA-
1 AATAATAATAATATAT
* *
84351794 AATAAT-ATAATACAA
1 AATAATAATAATATAT
*
84351809 AATAAAAATAATATAT
1 AATAATAATAATATAT
84351825 -ATAATAAT
1 AATAATAAT
84351833 TTTTTACATT
Statistics
Matches: 88, Mismatches: 13, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
12 4 0.05
13 13 0.15
14 20 0.23
15 22 0.25
16 18 0.20
18 8 0.09
19 3 0.03
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (16 bp):
AATAATAATAATATAT
Found at i:84351736 original size:32 final size:34
Alignment explanation
Indices: 84351697--84351760 Score: 98
Period size: 33 Copynumber: 1.9 Consensus size: 34
84351687 AAATTATACC
84351697 TAATAAAAA-ATAAT-AGATAAT-TATATAATATA
1 TAATAAAAATATAATGA-ATAATATATATAATATA
84351729 TAATAAAAATATAATGAATAATATATATAATA
1 TAATAAAAATATAATGAATAATATATATAATA
84351761 AAATGTATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 9 0.31
33 10 0.34
34 10 0.34
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (34 bp):
TAATAAAAATATAATGAATAATATATATAATATA
Found at i:84351749 original size:40 final size:39
Alignment explanation
Indices: 84351705--84351818 Score: 101
Period size: 40 Copynumber: 2.9 Consensus size: 39
84351695 CCTAATAAAA
*
84351705 AATAATAGATAATTATATAATATATAATAAAAATATAAT
1 AATAATAGATAATAATATAATATATAATAAAAATATAAT
* * *
84351744 GAATAATATAT-ATAATAAAATGTATAAATCAAAATATATAAT
1 -AATAATAGATAATAATATAATATAT-AAT-AAAA-ATATAAT
* *
84351786 AA-AAT-G-TAAATAATATAATACAAAATAAAAATA
1 AATAATAGAT-AATAATATAATATATAATAAAAATA
84351819 ATATATATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
37 3 0.05
38 5 0.08
39 14 0.23
40 25 0.42
41 6 0.10
42 7 0.12
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.32
Consensus pattern (39 bp):
AATAATAGATAATAATATAATATATAATAAAAATATAAT
Found at i:84351758 original size:16 final size:14
Alignment explanation
Indices: 84351724--84351831 Score: 73
Period size: 14 Copynumber: 7.8 Consensus size: 14
84351714 TAATTATATA
84351724 ATATATAAT-AAA-
1 ATATATAATAAAAT
84351736 A-ATATAATGAATAAT
1 ATATATAAT-AA-AAT
84351751 ATATATAATAAAAT
1 ATATATAATAAAAT
* *
84351765 GTATA-AATCAAA-
1 ATATATAATAAAAT
84351777 ATATATAATAAAAT
1 ATATATAATAAAAT
* * *
84351791 GTAAATAATATAAT
1 ATATATAATAAAAT
* * *
84351805 ACAAAATAAAAATAAT
1 A-TATATAATAA-AAT
84351821 ATATATAATAA
1 ATATATAATAA
84351832 TTTTTTACAT
Statistics
Matches: 73, Mismatches: 14, Indels: 15
0.72 0.14 0.15
Matches are distributed among these distances:
11 7 0.10
12 5 0.07
13 13 0.18
14 20 0.27
15 17 0.23
16 11 0.15
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (14 bp):
ATATATAATAAAAT
Found at i:84351763 original size:26 final size:23
Alignment explanation
Indices: 84351724--84351831 Score: 103
Period size: 26 Copynumber: 4.5 Consensus size: 23
84351714 TAATTATATA
84351724 ATATATAATAAAAATATAATGAATAAT
1 ATATATAAT-AAAATAT-A--AATAAT
*
84351751 ATATATAATAAAATGTATAAATCAAA
1 ATATATAATAAAA--TATAAAT-AAT
*
84351777 ATATATAATAAAATGTAAATAAT
1 ATATATAATAAAATATAAATAAT
* *
84351800 ATA-AT-ACAAAATAAAAATAAT
1 ATATATAATAAAATATAAATAAT
84351821 ATATATAATAA
1 ATATATAATAA
84351832 TTTTTTACAT
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
21 16 0.23
22 4 0.06
23 8 0.12
24 6 0.09
25 3 0.04
26 19 0.28
27 10 0.14
28 3 0.04
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (23 bp):
ATATATAATAAAATATAAATAAT
Found at i:84351765 original size:21 final size:22
Alignment explanation
Indices: 84351736--84351831 Score: 81
Period size: 21 Copynumber: 4.2 Consensus size: 22
84351726 ATATAATAAA
*
84351736 AATATAATG-AATAATATATAT
1 AATAAAATGAAATAATATATAT
*
84351757 AATAAAATGTATAAATCAAAATATAT
1 AATAAAATG---AAAT-AATATATAT
84351783 AATAAAATGTAAATAATATA-AT
1 AATAAAATG-AAATAATATATAT
* *
84351805 -ACAAAATAAAAATAATATATAT
1 AATAAAAT-GAAATAATATATAT
84351827 AATAA
1 AATAA
84351832 TTTTTTACAT
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
21 24 0.39
22 4 0.07
23 8 0.13
24 5 0.08
25 3 0.05
26 17 0.28
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (22 bp):
AATAAAATGAAATAATATATAT
Found at i:84351905 original size:16 final size:17
Alignment explanation
Indices: 84351869--84351906 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
84351859 GGTAAAATAA
*
84351869 ATAAAATATATAATATT
1 ATAAAATAAATAATATT
84351886 -TAAAATAAATAA-ATT
1 ATAAAATAAATAATATT
84351901 ATAAAA
1 ATAAAA
84351907 ATTTAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAAAATAAATAATATT
Found at i:84351915 original size:25 final size:25
Alignment explanation
Indices: 84351861--84351914 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
84351851 ATGTTTATGG
*
84351861 TAAAATAAATAAAATATATAATATT
1 TAAAATAAATAAAATATATAAAATT
*
84351886 TAAAATAAATAAATTATA-AAAATT
1 TAAAATAAATAAAATATATAAAATT
84351910 TAAAA
1 TAAAA
84351915 AGGATTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAAATAAATAAAATATATAAAATT
Found at i:84353588 original size:21 final size:21
Alignment explanation
Indices: 84353563--84353634 Score: 58
Period size: 21 Copynumber: 3.3 Consensus size: 21
84353553 AGACGCCAAA
84353563 TCTGTCATCTTCGATCTGCTC
1 TCTGTCATCTTCGATCTGCTC
* * **
84353584 TCTGTCAAT-ATAGAGATGC-C
1 TCTGTC-ATCTTCGATCTGCTC
84353604 AAATCTGTCATCTTCGATCTGCTC
1 ---TCTGTCATCTTCGATCTGCTC
84353628 TCTGTCA
1 TCTGTCA
84353635 ATACAGAGAC
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 19 0.51
22 4 0.11
23 12 0.32
24 1 0.03
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (21 bp):
TCTGTCATCTTCGATCTGCTC
Found at i:84353801 original size:44 final size:44
Alignment explanation
Indices: 84353457--84353786 Score: 416
Period size: 44 Copynumber: 7.5 Consensus size: 44
84353447 CTCCTTGCCT
* * * *
84353457 AATACAGAGAGGCCAAATCTGTCATCTTCAATCTGCT-TCAATATA
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTC--TGTC
* * * * *
84353502 AGCATACA-A-ATGTCAGATCTG-CTATCTTTGATCTGCTCTTTGTC
1 A--ATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
84353546 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* *
84353590 AATATAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* *
84353634 AATACAGAGACGCCAAATCTGTCATCTTCGATCTACTCTCTGTT
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* *
84353678 AATATAGAGACGCCAAATCTATCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* *
84353722 AATACAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* *
84353766 AATATAGAGTCGCCAAATCTG
1 AATACAGAGACGCCAAATCTG
84353787 CTATGGGTGA
Statistics
Matches: 249, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
42 5 0.02
43 1 0.00
44 213 0.86
45 23 0.09
46 2 0.01
47 5 0.02
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (44 bp):
AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
Found at i:84365789 original size:29 final size:28
Alignment explanation
Indices: 84365755--84365820 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
84365745 AAATTATACC
*
84365755 TAATAAAAAATAATAGAT-AATTATATA-A
1 TAATAAAAAAT-ATA-ATGAATAATATATA
84365783 TATATAATAAAATATAATGAATAATATATA
1 TA-ATAA-AAAATATAATGAATAATATATA
84365813 TAATAAAA
1 TAATAAAA
84365821 TGTATAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
28 6 0.18
29 19 0.58
30 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (28 bp):
TAATAAAAAATATAATGAATAATATATA
Found at i:84365794 original size:32 final size:33
Alignment explanation
Indices: 84365755--84365885 Score: 96
Period size: 32 Copynumber: 3.9 Consensus size: 33
84365745 AAATTATACC
84365755 TAATAAAAAATAAT-AGATAAT-TATATAATATA
1 TAATAAAAAATAATGA-ATAATATATATAATATA
* *
84365787 TAATAAAATATAATGAATAATATATATAATAAAA
1 TAATAAAAAATAATGAATAATATATATAAT-ATA
* * *
84365821 TGTATAAATCAAAATATAT-AATAAAATGTA-AATAATA
1 T-AAT-AA--AAAATA-ATGAATAATATATATAAT-ATA
84365858 TAATAAAAAA-AA--AATAATATATATAATA
1 TAATAAAAAATAATGAATAATATATATAATA
84365886 ATTTTTTTTA
Statistics
Matches: 80, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
30 10 0.12
31 4 0.05
32 19 0.24
33 13 0.16
34 3 0.04
35 4 0.05
36 4 0.05
37 7 0.09
38 14 0.17
39 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (33 bp):
TAATAAAAAATAATGAATAATATATATAATATA
Found at i:84365826 original size:14 final size:14
Alignment explanation
Indices: 84365782--84365886 Score: 78
Period size: 14 Copynumber: 7.8 Consensus size: 14
84365772 TAATTATATA
84365782 ATATATAATAAAAT
1 ATATATAATAAAAT
84365796 ATA-ATGAAT--AAT
1 ATATAT-AATAAAAT
84365808 ATATATAATAAAAT
1 ATATATAATAAAAT
* *
84365822 GTATA-AATCAAA-
1 ATATATAATAAAAT
84365834 ATATATAATAAAAT
1 ATATATAATAAAAT
* * *
84365848 GTAAATAATATAAT
1 ATATATAATAAAAT
* * *
84365862 A-AAAAAAAAATAAT
1 ATATATAATAA-AAT
84365876 ATATATAATAA
1 ATATATAATAA
84365887 TTTTTTTTAC
Statistics
Matches: 69, Mismatches: 14, Indels: 15
0.70 0.14 0.15
Matches are distributed among these distances:
12 13 0.19
13 22 0.32
14 28 0.41
15 6 0.09
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (14 bp):
ATATATAATAAAAT
Found at i:84365862 original size:26 final size:26
Alignment explanation
Indices: 84365777--84365862 Score: 97
Period size: 26 Copynumber: 3.3 Consensus size: 26
84365767 ATAGATAATT
*
84365777 ATATAATATATAATAAAATAT-AATGA
1 ATATAATATATAATAAAATGTAAAT-A
*
84365803 ATA-ATATATATAATAAAATGTATA-A
1 ATATA-ATATATAATAAAATGTAAATA
*
84365828 ATCAAAATATATAATAAAATGTAAATA
1 AT-ATAATATATAATAAAATGTAAATA
84365855 ATATAATA
1 ATATAATA
84365863 AAAAAAAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
25 4 0.08
26 42 0.82
27 5 0.10
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (26 bp):
ATATAATATATAATAAAATGTAAATA
Found at i:84365872 original size:19 final size:19
Alignment explanation
Indices: 84365831--84365883 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
84365821 TGTATAAATC
**
84365831 AAAAT-ATATAATAAAATG
1 AAAATAATATAATAAAAAA
*
84365849 TAAATAATATAATAAAAAA
1 AAAATAATATAATAAAAAA
84365868 AAAATAATATATATAA
1 AAAATAATATA-ATAA
84365884 TAATTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 4 0.14
19 21 0.72
20 4 0.14
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAATAATATAATAAAAAA
Found at i:84365944 original size:24 final size:24
Alignment explanation
Indices: 84365917--84365969 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
84365907 AATGTTATGG
*
84365917 TAAAATAAAAAAA-TATATAATATT
1 TAAAATAAAAAAATTATA-AAAATT
*
84365941 TAAAATAAATAAATTATAAAAATT
1 TAAAATAAAAAAATTATAAAAATT
84365965 TAAAA
1 TAAAA
84365970 AGGATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (24 bp):
TAAAATAAAAAAATTATAAAAATT
Found at i:84367964 original size:39 final size:40
Alignment explanation
Indices: 84367811--84367966 Score: 171
Period size: 39 Copynumber: 4.0 Consensus size: 40
84367801 GTGTGCATGA
* * *
84367811 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
84367850 GC---TAGTAATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* *
84367887 GCAAGTTGTTA-ATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
84367926 GCAAATCGTGATATCCGGGTTAAGTCCCGAAGGC-TTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
84367965 GC
1 GC
84367967 GGGCTACCAT
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
36 21 0.21
37 9 0.09
39 44 0.45
40 24 0.24
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:84376017 original size:40 final size:40
Alignment explanation
Indices: 84375868--84376029 Score: 161
Period size: 40 Copynumber: 4.0 Consensus size: 40
84375858 GTGCGCATGA
* *
84375868 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
*
84375908 GCTAGTAATT-T--TATCCGGGCTAAGACCCGAAGGCATTCGT
1 GC-A--AATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
84375948 GCAAGTTGTTAAATCCTGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
84375988 GCAAATCGTGATATCCGGGTTAAGTCCCGAAGGCCTTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
84376028 GC
1 GC
84376030 GGGCTACCAT
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
37 3 0.03
38 1 0.01
39 1 0.01
40 86 0.86
41 4 0.04
42 1 0.01
43 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:84387429 original size:68 final size:64
Alignment explanation
Indices: 84387312--84387462 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 64
84387302 ATACAGATAG
* * * * *
84387312 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-
84387377 TA
63 TA
* * * **
84387379 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGT-GTACAAGAGAGCTACGACAT
84387443 A
64 A
84387444 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
84387463 TGTAGTACGA
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
64 18 0.25
65 3 0.04
66 2 0.03
67 1 0.01
68 47 0.65
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:84387644 original size:49 final size:50
Alignment explanation
Indices: 84387452--84387649 Score: 220
Period size: 50 Copynumber: 4.0 Consensus size: 50
84387442 TATATGTAGC
* * *
84387452 TAGGTCGCATGTGTAGTACGAAGTGCAGGCTACTATGCGTACCCA-ATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAA-T
* * * * * * * *
84387503 TCGATCACTTGTGTAGTACTAAGTGAAAGCTACTACGTGTATCAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
* * *
84387553 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
* *
84387603 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
84387650 GTTTGGCTAC
Statistics
Matches: 122, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 41 0.34
50 46 0.38
51 35 0.29
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
Found at i:84388741 original size:2 final size:2
Alignment explanation
Indices: 84388734--84388768 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
84388724 TCATGACATG
84388734 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84388769 GTGACTAGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:84390506 original size:93 final size:93
Alignment explanation
Indices: 84390395--84390563 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 93
84390385 CCCATAAGCA
* *
84390395 AACTCGGACTCAAATCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGAACTCAAATCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAAC
84390460 GAGCTCGGATGGCTAGTTACATCTCACG
66 GAGCTCGGATGGCTAGTTACATCTCACG
* * ** *
84390488 AACTCGAACTCAACTCAACGAGTTCGGACGTTTGCATCCATAAGTGAACTTGGACTCAACTCAAC
1 AACTCGAACTCAAATCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAAC
*
84390553 GAGTTCGGATG
66 GAGCTCGGATG
84390564 CCCAAATATC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGAACTCAAATCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGGCTAGTTACATCTCACG
Found at i:84390561 original size:46 final size:46
Alignment explanation
Indices: 84390386--84390561 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
84390376 TGTAACCCGC
* * * *
84390386 CCATAAGCAAACTCGGACTCAAATCAACGAGCTCGGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTTACAT
* *
84390432 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGGCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-CG-T--TTACAT
* * * *
84390482 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTTACAT
* * *
84390525 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
84390562 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 61 0.57
47 28 0.26
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTTACAT
Found at i:84398856 original size:28 final size:28
Alignment explanation
Indices: 84398791--84398891 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
84398781 ATAGTGAATC
*
84398791 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
84398820 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
84398848 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
84398878 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84398892 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84410848 original size:40 final size:40
Alignment explanation
Indices: 84410789--84410975 Score: 203
Period size: 40 Copynumber: 4.7 Consensus size: 40
84410779 CAATTGAATG
* * * *
84410789 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
84410829 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
84410869 ACATGCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
84410909 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
*
84410949 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
84410976 CGAGCATGTG
Statistics
Matches: 121, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:84410994 original size:40 final size:40
Alignment explanation
Indices: 84410789--84410996 Score: 154
Period size: 40 Copynumber: 5.2 Consensus size: 40
84410779 CAATTGAATG
* * * * * *
84410789 ATATCCGGGCTAAGTCCCGAAGACATT-TATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGA-GCAAGTAGTC
* * * *
84410829 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GAC
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGAGCAAGTAGTC
* * * * *
84410868 TACATGCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 -ATATCCGGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTC
* * * * *
84410909 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATTC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGAGCAAGT-AGTC
* *
84410950 -TATCCGGGCTAAGACCCGAAGGCATTCGAGCATGTGGTC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTC
84410989 ATATCCGG
1 ATATCCGG
84410997 TTGTATTCCG
Statistics
Matches: 133, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
39 5 0.04
40 123 0.92
41 5 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTC
Found at i:84410995 original size:80 final size:80
Alignment explanation
Indices: 84410829--84410996 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 80
84410819 GCTAGTAATT
* * * * *
84410829 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACATGCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTACATCCGGGCTAAGACCCGAAGGCA
* * *
84410894 TTCGTGCAAGTTGTT
66 TTCGAGCAAGTGGTC
* * * *
84410909 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCA-TTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTAC-ATCCGGGCTAAGACCCGAAGGC
*
84410973 ATTCGAGCATGTGGTC
65 ATTCGAGCAAGTGGTC
84410989 ATATCCGG
1 ATATCCGG
84410997 TTGTATTCCG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 2 0.03
80 71 0.97
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTACATCCGGGCTAAGACCCGAAGGCA
TTCGAGCAAGTGGTC
Found at i:84418521 original size:40 final size:40
Alignment explanation
Indices: 84418462--84418648 Score: 203
Period size: 40 Copynumber: 4.7 Consensus size: 40
84418452 CAATTGAATG
* * * *
84418462 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
84418502 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
84418542 ACATGCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
84418582 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
*
84418622 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
84418649 CGAGCATGTG
Statistics
Matches: 121, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:84418667 original size:40 final size:40
Alignment explanation
Indices: 84418462--84418669 Score: 154
Period size: 40 Copynumber: 5.2 Consensus size: 40
84418452 CAATTGAATG
* * * * * *
84418462 ATATCCGGGCTAAGTCCCGAAGACATT-TATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGA-GCAAGTAGTC
* * * *
84418502 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GAC
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGAGCAAGTAGTC
* * * * *
84418541 TACATGCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 -ATATCCGGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTC
* * * * *
84418582 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATTC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGAGCAAGT-AGTC
* *
84418623 -TATCCGGGCTAAGACCCGAAGGCATTCGAGCATGTGGTC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTC
84418662 ATATCCGG
1 ATATCCGG
84418670 TTGTATTCCG
Statistics
Matches: 133, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
39 5 0.04
40 123 0.92
41 5 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTC
Found at i:84418668 original size:80 final size:80
Alignment explanation
Indices: 84418502--84418669 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 80
84418492 GCTAGTAATT
* * * * *
84418502 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACATGCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTACATCCGGGCTAAGACCCGAAGGCA
* * *
84418567 TTCGTGCAAGTTGTT
66 TTCGAGCAAGTGGTC
* * * *
84418582 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCA-TTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTAC-ATCCGGGCTAAGACCCGAAGGC
*
84418646 ATTCGAGCATGTGGTC
65 ATTCGAGCAAGTGGTC
84418662 ATATCCGG
1 ATATCCGG
84418670 TTGTATTCCG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 2 0.03
80 71 0.97
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTACATCCGGGCTAAGACCCGAAGGCA
TTCGAGCAAGTGGTC
Found at i:84426230 original size:40 final size:40
Alignment explanation
Indices: 84426155--84426339 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
84426145 CAATTGAATG
* * * * * * *
84426155 ATATCCGGGCTAAGTCCCAAAGACATTTATTCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * * *
84426195 ATATCCGGGTTAAGACCCAAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* ** **
84426235 ACATGTGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * * *
84426275 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
*
84426315 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
84426340 TTCGAGCATG
Statistics
Matches: 115, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 3 0.03
40 110 0.96
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:84426360 original size:40 final size:40
Alignment explanation
Indices: 84426241--84426362 Score: 138
Period size: 40 Copynumber: 3.0 Consensus size: 40
84426231 GACTACATGT
* * * *
84426241 GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCC
1 GGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTCATATCC
* * * *
84426281 GGGCTAATACCCGAAGGCATTTGCGCAAGTCATTC-TATCC
1 GGGCTAAGACCCGAAGGCATTCGAGCAAGT-AGTCATATCC
* *
84426321 GGGCTAAGACCCGAAGGCATTCGAGCATGTGGTCATATCC
1 GGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTCATATCC
84426361 GG
1 GG
84426363 TTGTATTCCG
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.03
40 64 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTCGAGCAAGTAGTCATATCC
Found at i:84429401 original size:13 final size:13
Alignment explanation
Indices: 84429383--84429408 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84429373 AGAAAGAGAT
84429383 TTCAATTAATCAA
1 TTCAATTAATCAA
84429396 TTCAATTAATCAA
1 TTCAATTAATCAA
84429409 CCTAGGGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TTCAATTAATCAA
Found at i:84430004 original size:23 final size:23
Alignment explanation
Indices: 84429975--84430036 Score: 97
Period size: 23 Copynumber: 2.7 Consensus size: 23
84429965 CCACATTTAC
** *
84429975 TACTATTAGCAGCTTTGCTGCGT
1 TACTATTAGCAGCTACGCTACGT
84429998 TACTATTAGCAGCTACGCTACGT
1 TACTATTAGCAGCTACGCTACGT
84430021 TACTATTAGCAGCTAC
1 TACTATTAGCAGCTAC
84430037 ACTGTGGTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (23 bp):
TACTATTAGCAGCTACGCTACGT
Found at i:84437751 original size:15 final size:15
Alignment explanation
Indices: 84437731--84437763 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
84437721 AACGTACAAA
84437731 ATATGTATAAATTAC
1 ATATGTATAAATTAC
84437746 ATATGTATAAATTAC
1 ATATGTATAAATTAC
84437761 ATA
1 ATA
84437764 GGAAAACAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
ATATGTATAAATTAC
Found at i:84447874 original size:30 final size:29
Alignment explanation
Indices: 84447780--84447881 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
84447770 TATAGTGAAT
* * *
84447780 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
84447809 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
84447837 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
84447867 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
84447882 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:84468758 original size:13 final size:13
Alignment explanation
Indices: 84468740--84468772 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
84468730 GGTTGTTTAT
84468740 TAAACTAATTAAC
1 TAAACTAATTAAC
84468753 TAAACTAATTAAC
1 TAAACTAATTAAC
84468766 T-AACTAA
1 TAAACTAA
84468773 ACTAAAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:84471294 original size:27 final size:28
Alignment explanation
Indices: 84471264--84471363 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
84471254 TTTAGTTTAC
84471264 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* ** *
84471291 TAAAAATACTAAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
84471318 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
84471345 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
84471364 CCGATTTACA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
26 7 0.12
27 50 0.85
28 2 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:84471331 original size:54 final size:54
Alignment explanation
Indices: 84471264--84471370 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
84471254 TTTAGTTTAC
* * *
84471264 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTAAAATACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACCAAAATACCCCCGATTTG
* * * *
84471318 TAAATTTACCGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAATACCCCCGATTT
84471371 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 5 0.11
54 40 0.89
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACCAAAATACCCCCGATTTG
Found at i:84471381 original size:54 final size:53
Alignment explanation
Indices: 84471266--84471382 Score: 128
Period size: 54 Copynumber: 2.2 Consensus size: 53
84471256 TAGTTTACTA
* * * **
84471266 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTAAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACCAAAATACCCCCGATTTAC
* * *
84471319 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCCCCGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACCAAAATACCCCCGATTTAC
84471373 AGAATTACCG
1 A-AATTACCG
84471383 TTTTACCCCT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
53 8 0.15
54 43 0.81
55 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACCAAAATACCCCCGATTTAC
Found at i:84471389 original size:27 final size:27
Alignment explanation
Indices: 84471366--84471676 Score: 354
Period size: 27 Copynumber: 11.6 Consensus size: 27
84471356 AAGTACCCCC
*
84471366 GATTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
84471393 AATTTACATAATTACCGTTTTACCC-T
1 GATTTACAGAATTACCGTTTTACCCTT
* * * *
84471419 GATTTACATAATTATCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
84471446 GACTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
84471473 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * * *
84471500 GATTTACATAATTATCGTTTTACTCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
84471527 GACTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
84471554 GATTTACTGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* **
84471581 GATTTATAGAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
84471608 GATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
*
84471635 GATTTACAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
84471662 AATTTACAAAATTAC
1 GATTTACAGAATTAC
84471677 TAAAATACCC
Statistics
Matches: 246, Mismatches: 37, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.09
27 223 0.91
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTT
Done.