Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 283 of 328
Found at i:84752109 original size:251 final size:251
Alignment explanation
Indices: 84751666--84752168 Score: 979
Period size: 251 Copynumber: 2.0 Consensus size: 251
84751656 TAGAATTCGT
84751666 GTTATGTGTTTGTATATTTATGTTGGTTGATGATTTCGGATATGGTATGAATGAATCAGCTATGA
1 GTTATGTGTTTGTATATTTATGTTGGTTGATGATTTCGGATATGGTATGAATGAATCAGCTATGA
84751731 TATATATAATTGGTCTTCGGTTGAGCATATATTGAAAGTGTATCCAAGATATATGATGTTTGTGA
66 TATATATAATTGGTCTTCGGTTGAGCATATATTGAAAGTGTATCCAAGATATATGATGTTTGTGA
*
84751796 AGCTTGCTATGAGTTTTGGCCATATGTTATTTAATGGTTGTTGATTGAGTTAAGGTAAATCATGT
131 AGCTTGCTATGAGTTTCGGCCATATGTTATTTAATGGTTGTTGATTGAGTTAAGGTAAATCATGT
84751861 ATTAGTTAGGTAAAAATCAAGATATATGCATTAGGTAAATTCAGTGTTCACTTATG
196 ATTAGTTAGGTAAAAATCAAGATATATGCATTAGGTAAATTCAGTGTTCACTTATG
84751917 GTTATGTGTTTGTATATTTATGTTGGTTGATGATTTCGGATATGGTATGAATGAATCAGCTATGA
1 GTTATGTGTTTGTATATTTATGTTGGTTGATGATTTCGGATATGGTATGAATGAATCAGCTATGA
* *
84751982 TATATATAATTGGTCTTGGGTTGAGCATATATTGAGAGTGTATCCAAGATATATGATGTTTGTGA
66 TATATATAATTGGTCTTCGGTTGAGCATATATTGAAAGTGTATCCAAGATATATGATGTTTGTGA
84752047 AGCTTGCTATGAGTTTCGGCCATATGTTATTTAATGGTTGTTGATTGAGTTAAGGTAAATCATGT
131 AGCTTGCTATGAGTTTCGGCCATATGTTATTTAATGGTTGTTGATTGAGTTAAGGTAAATCATGT
84752112 ATTAGTTAGGTAAAAATCAAGATATATGCATTAGGTAAATTCAGTGTTCACTTATG
196 ATTAGTTAGGTAAAAATCAAGATATATGCATTAGGTAAATTCAGTGTTCACTTATG
84752168 G
1 G
84752169 ACTATATTAA
Statistics
Matches: 249, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
251 249 1.00
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (251 bp):
GTTATGTGTTTGTATATTTATGTTGGTTGATGATTTCGGATATGGTATGAATGAATCAGCTATGA
TATATATAATTGGTCTTCGGTTGAGCATATATTGAAAGTGTATCCAAGATATATGATGTTTGTGA
AGCTTGCTATGAGTTTCGGCCATATGTTATTTAATGGTTGTTGATTGAGTTAAGGTAAATCATGT
ATTAGTTAGGTAAAAATCAAGATATATGCATTAGGTAAATTCAGTGTTCACTTATG
Found at i:84753150 original size:45 final size:44
Alignment explanation
Indices: 84753099--84753264 Score: 246
Period size: 45 Copynumber: 3.7 Consensus size: 44
84753089 TTGGGTGACA
84753099 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCG-CGTTGAT
84753144 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCG-GTGTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGCGT-TGAT
84753188 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCGTTGAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-GCGTTGAT
* * * *
84753233 TATGAACTAGTATAAGA-CATTGTTGGACATGG
1 TGTGAGCCAGTGTAAGACCA-TGTTGGACATGG
84753265 GACATGGGAT
Statistics
Matches: 113, Mismatches: 4, Indels: 8
0.90 0.03 0.06
Matches are distributed among these distances:
43 2 0.02
44 42 0.37
45 67 0.59
46 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (44 bp):
TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGCGTTGAT
Found at i:84753199 original size:89 final size:89
Alignment explanation
Indices: 84753099--84753264 Score: 271
Period size: 89 Copynumber: 1.9 Consensus size: 89
84753089 TTGGGTGACA
* * *
84753099 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTGTGAGCCAGTGTAAGACCA
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTATGAACCAGTATAAGA-CA
84753164 -TGTTGGACATGGCATCGGTGTGAT
65 TTGTTGGACATGGCATCGGTGTGAT
* *
84753188 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCGTTGATTATGAACTAGTATAAGACAT
1 TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTATGAACCAGTATAAGACAT
84753253 TGTTGGACATGG
66 TGTTGGACATGG
84753265 GACATGGGAT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
88 2 0.03
89 69 0.97
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (89 bp):
TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATTATGAACCAGTATAAGACAT
TGTTGGACATGGCATCGGTGTGAT
Found at i:84763763 original size:22 final size:20
Alignment explanation
Indices: 84763715--84763763 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
84763705 TCTTAACTAC
*
84763715 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
84763735 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
84763759 TCAAA
1 TCAAA
84763764 CTTCCATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:84764675 original size:43 final size:42
Alignment explanation
Indices: 84764513--84764678 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 42
84764503 AGTTCGTATA
* * * * * *
84764513 ATGCC-ATGTCCCAAATATGGTCTTACATGTTATCATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATATAATCACA-ATAG
* * * *
84764555 ACGCCACTGTCCCAGACATGGTCTTACAAAAAATCACAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATATAATCACAATA-G
* * * *
84764598 ATGCCAATGTCCAAGACATGTTCTTGCACATAATCACAATAG
1 ATGCCAATGTCCCAGACATGGTCTTACATATAATCACAATAG
* *
84764640 AATGCCAATGTCCCAGACATCGTCTTACATGTAATCACA
1 -ATGCCAATGTCCCAGACATGGTCTTACATATAATCACA
84764679 TCTCGATAAC
Statistics
Matches: 98, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
42 7 0.07
43 91 0.93
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATATAATCACAATAG
Found at i:84764843 original size:47 final size:47
Alignment explanation
Indices: 84764774--84764910 Score: 247
Period size: 47 Copynumber: 2.9 Consensus size: 47
84764764 TTCTTGCTCA
**
84764774 TATTTGCTCGTTTGACATTCATAGCAATTCAATGATAATAAAACATT
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
84764821 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
*
84764868 TATTTGCTCGTTCAACATTCATAGCAATTTAATGATAATAAAA
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAA
84764911 TATATATAAT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.37
Consensus pattern (47 bp):
TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
Found at i:84768679 original size:19 final size:19
Alignment explanation
Indices: 84768655--84768745 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
84768645 ATAATCTTCA
84768655 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
84768674 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
84768693 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
84768710 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
84768728 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
84768746 ATATATAATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:84768726 original size:35 final size:37
Alignment explanation
Indices: 84768655--84768745 Score: 150
Period size: 35 Copynumber: 2.5 Consensus size: 37
84768645 ATAATCTTCA
84768655 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
84768693 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
84768728 ATGATATGCAATCTTAGA
1 ATGATA-GCAATCTTAGA
84768746 ATATATAATT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.37
36 16 0.31
37 10 0.20
38 6 0.12
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:84769058 original size:17 final size:17
Alignment explanation
Indices: 84769034--84769068 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
84769024 ATGTTTCCCG
*
84769034 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
84769052 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
84769069 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:84777444 original size:78 final size:78
Alignment explanation
Indices: 84777315--84777641 Score: 500
Period size: 78 Copynumber: 4.2 Consensus size: 78
84777305 TGACGGAGAG
* *
84777315 CAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCACCTCTGTATTAGA-CGGAGAGCA
1 CAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGG-GAGCA
*
84777379 GATCGAAGACACAA
65 GATCGAAGACATAA
* ** *
84777393 CAGATCTGACCTTCAATT-AAGCAGATCCAAGATGATATGGCATCTCTGTATTAGACGGGGAGTA
1 CAGATCTGACCTTC-ATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGGGAGCA
84777457 GATCGAAGACATAA
65 GATCGAAGACATAA
84777471 CAGAT-TGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGGGAGCA
1 CAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGGGAGCA
*
84777535 GATCAAAGACATAA
65 GATCGAAGACATAA
84777549 CAGAT-TGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGGGAGCA
1 CAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGGGAGCA
* *
84777613 AATCGAAGACATAG
65 GATCGAAGACATAA
84777627 CAGATCTGACCTTCA
1 CAGATCTGACCTTCA
84777642 CGTGTTTACG
Statistics
Matches: 231, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
77 4 0.02
78 221 0.96
79 6 0.03
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (78 bp):
CAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGGGAGCAG
ATCGAAGACATAA
Found at i:84777821 original size:78 final size:78
Alignment explanation
Indices: 84777713--84778086 Score: 430
Period size: 78 Copynumber: 4.6 Consensus size: 78
84777703 CGAAGAAACA
* * * * *
84777713 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
84777778 GTAGATCCAAGAT
66 GAAGATCCAAGAT
* * *
84777791 GATTTGGCATATCTGTATTAGACGGGGAGCAGATCGAAGACACAATAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
* *
84777856 GCAGATACAAGAT
66 GAAGATCCAAGAT
* *
84777869 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCACTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
84777933 AGAAGATCCAAGAT
65 AGAAGATCCAAGAT
* * *
84777947 GATTTGGCATCTTTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCAT-TG-
84778012 TTACATCGAAGTAGATCCAAGAT
64 --A-A--G-A--AGATCCAAGAT
* *
84778035 GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATC--AGAGATAACAGAT
1 ----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT
84778087 TTGGCATCTC
Statistics
Matches: 253, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.00
78 191 0.75
79 3 0.01
82 1 0.00
83 1 0.00
85 1 0.00
86 1 0.00
88 11 0.04
90 11 0.04
92 32 0.13
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GAAGATCCAAGAT
Found at i:84778036 original size:365 final size:368
Alignment explanation
Indices: 84777348--84778123 Score: 1138
Period size: 365 Copynumber: 2.1 Consensus size: 368
84777338 GATCCAAGAT
* *
84777348 GATTTGGCACCTCTGTATTAGACGGAGAGCAGATCGAAGACACAACAGATCTGACCTTCAATTAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACACAACAGATCTGACCTTCAATTAA
* * *
84777413 GCAGATCCAAGATGATATGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAACAGATTG
66 GCAGATCCAAGATGATATGGCATATCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATTG
* *
84777478 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGGGAGCAGATCAAAG
131 GACCTTCATTGAAGCAGATACAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAG
* * *
84777543 ACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATAGG
196 ACATAACAGATTGGACCTTCACTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGG
*
84777608 GAGCAAATCGAAGACATAGCAGATCTGACCTTCACGTGTTTACGCTGAAGCAGATCTAAGAT-GA
261 GAGCAAATCGAAGACATAGCAGATCTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATAGA
*
84777672 TTTGGCATCTCTGTACT-GTCAGAGAACAAATC-GAAGA-AACA
326 TTTGGCATCTCTGTACTAGACAGAGAACAAATCAG-AGATAACA
* * *
84777713 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTC-ATTAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACACAACAGATCTGACCTTCAATT-A
* * *
84777777 AGTAGATCCAAGATGATTTGGCATATCTGTATTAGACGGGGAGCAGATCGAAGACACAATAGATC
65 AGCAGATCCAAGATGATATGGCATATCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGAT-
*
84777842 T-GACCTTCATTGAAGCAGATACAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAA
129 TGGACCTTCATTGAAGCAGATACAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAA
*
84777906 AGACATAACAGATTGGACCTTCACTGAAGAAGATCCAAGATGATTTGGCATCTTTGTATTAGACA
194 AGACATAACAGATTGGACCTTCACTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACA
* * * *
84777971 GGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGTTTAC-ATCGAAGTAGATCCAAGAT
259 GGGAGCAAATCGAAGACATAGCAGATCTGACCTTCACGTGTTTACGCT-GAAGCAGATCCAAGAT
* * * *
84778035 GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACA
323 ---AGATTTGGCATCTCTGTACTAGACAGAGAACAAATCAGAGATAACA
* *
84778084 GATTTGGCATCTC-AGTATTAGAC-AACGAGCAGATTGAAGA
1 GATTTGGCATCTCTA-TATTAGACGGA-GAGCAGATCGAAGA
84778124 AGTAGATTTG
Statistics
Matches: 368, Mismatches: 31, Indels: 18
0.88 0.07 0.04
Matches are distributed among these distances:
364 4 0.01
365 291 0.79
366 1 0.00
369 18 0.05
370 16 0.04
371 38 0.10
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (368 bp):
GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACACAACAGATCTGACCTTCAATTAA
GCAGATCCAAGATGATATGGCATATCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATTG
GACCTTCATTGAAGCAGATACAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAG
ACATAACAGATTGGACCTTCACTGAAGAAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGG
GAGCAAATCGAAGACATAGCAGATCTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATAGA
TTTGGCATCTCTGTACTAGACAGAGAACAAATCAGAGATAACA
Found at i:84778102 original size:45 final size:46
Alignment explanation
Indices: 84778030--84778220 Score: 198
Period size: 45 Copynumber: 4.3 Consensus size: 46
84778020 AAGTAGATCC
* * *
84778030 AAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG
1 AAGATAACAGATTTGGCATCTCAGTATTAGACGGGGAGCAGATCAG
*** *
84778076 -AGATAACAGATTTGGCATCTCAGTATTAGACAACGAGCAGAT-TG
1 AAGATAACAGATTTGGCATCTCAGTATTAGACGGGGAGCAGATCAG
** * *
84778120 AAGA-AGTAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC-G
1 AAGATAACAGATTTGGCATCTCAGTATTAGACGGGGAGCAGATCAG
*
84778164 AAGATAACAGATTTGG--TGTCAATGTATTAGACGGGGAGCAGATCA-
1 AAGATAACAGATTTGGCATCTC-A-GTATTAGACGGGGAGCAGATCAG
*
84778209 AAGATAGCAGAT
1 AAGATAACAGAT
84778221 ATCGCCTTCC
Statistics
Matches: 120, Mismatches: 19, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
43 3 0.03
44 37 0.31
45 80 0.67
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (46 bp):
AAGATAACAGATTTGGCATCTCAGTATTAGACGGGGAGCAGATCAG
Found at i:84778584 original size:18 final size:19
Alignment explanation
Indices: 84778561--84778606 Score: 85
Period size: 18 Copynumber: 2.5 Consensus size: 19
84778551 ATGGAAATAT
84778561 AATCTTAGATATGAT-TGC
1 AATCTTAGATATGATATGC
84778579 AATCTTAGATATGATATGC
1 AATCTTAGATATGATATGC
84778598 AATCTTAGA
1 AATCTTAGA
84778607 AGATATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
AATCTTAGATATGATATGC
Found at i:84778632 original size:22 final size:22
Alignment explanation
Indices: 84778567--84778629 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
84778557 ATATAATCTT
84778567 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
84778585 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
84778607 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
84778630 GATTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
18 9 0.24
19 9 0.24
22 8 0.21
23 12 0.32
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:84781703 original size:29 final size:29
Alignment explanation
Indices: 84781671--84781727 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
84781661 AAAATTAACC
* *
84781671 TAATCTCATAATTTTTTGAAAAAATGACT
1 TAATCTCATAATTCTTTAAAAAAATGACT
* *
84781700 TAATTTGATAATTCTTTAAAAAAATGAC
1 TAATCTCATAATTCTTTAAAAAAATGAC
84781728 ATTTTTAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (29 bp):
TAATCTCATAATTCTTTAAAAAAATGACT
Found at i:84782861 original size:12 final size:12
Alignment explanation
Indices: 84782844--84782869 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84782834 AAAATAGGGC
84782844 TTTAGCGGCGTT
1 TTTAGCGGCGTT
84782856 TTTAGCGGCGTT
1 TTTAGCGGCGTT
84782868 TT
1 TT
84782870 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:84783037 original size:80 final size:81
Alignment explanation
Indices: 84782933--84783108 Score: 282
Period size: 80 Copynumber: 2.2 Consensus size: 81
84782923 CTAAAAATAG
* *
84782933 AAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTACAAAAAACGCCGCTAAAAACTAGAGCAAT
1 AAACGCCGCT-AAAACAGAGCAATAGCGGCATTTTACAAAAAACGCCGCTAAAAACCAGAGCAAT
*
84782998 AGCGGCGTTTTTGGT-A
65 AGCGGCGTTTATGGTCA
*
84783014 AAACGCCGCTAAAACAGAGCAATAGCGGCATTTTACCAAAAACGCCGCTAAAAACCAGAGCAATA
1 AAACGCCGCTAAAACAGAGCAATAGCGGCATTTTACAAAAAACGCCGCTAAAAACCAGAGCAATA
*
84783079 GTGGCGTTTATGGTCA
66 GCGGCGTTTATGGTCA
*
84783095 AAATGCCGCTAAAA
1 AAACGCCGCTAAAA
84783109 GTCATATAAC
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
80 64 0.73
81 24 0.27
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (81 bp):
AAACGCCGCTAAAACAGAGCAATAGCGGCATTTTACAAAAAACGCCGCTAAAAACCAGAGCAATA
GCGGCGTTTATGGTCA
Found at i:84783056 original size:39 final size:40
Alignment explanation
Indices: 84782933--84783087 Score: 222
Period size: 41 Copynumber: 3.9 Consensus size: 40
84782923 CTAAAAATAG
84782933 AAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTACAAA
1 AAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTACAAA
****
84782973 AAACGCCGCTAAAAACTAGAGCAATAGCGGCGTTTTTGGTA
1 AAACGCCGCTAAAAAC-AGAGCAATAGCGGCGTTTTACAAA
* *
84783014 AAACGCCGCT-AAAACAGAGCAATAGCGGCATTTTACCAA
1 AAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTACAAA
*
84783053 AAACGCCGCTAAAAACCAGAGCAATAGTGGCGTTT
1 AAACGCCGCTAAAAA-CAGAGCAATAGCGGCGTTT
84783088 ATGGTCAAAA
Statistics
Matches: 101, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
39 29 0.29
40 25 0.25
41 47 0.47
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (40 bp):
AAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTACAAA
Found at i:84783190 original size:37 final size:38
Alignment explanation
Indices: 84783125--84783209 Score: 120
Period size: 37 Copynumber: 2.2 Consensus size: 38
84783115 TAACCCCTAA
* *
84783125 AACCCTAAACCCCTAAAAAATCATAAACACTAATCTAT
1 AACCCTAAACCCCTAAAAAACCATAAACACTAAACTAT
84783163 AACCCATAAA-CCCT-AAAAACCATAAACACTAAACTAT
1 AACCC-TAAACCCCTAAAAAACCATAAACACTAAACTAT
84783200 AACTCCTAAA
1 AAC-CCTAAA
84783210 ACCTTAAACC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
37 28 0.65
38 11 0.26
39 4 0.09
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (38 bp):
AACCCTAAACCCCTAAAAAACCATAAACACTAAACTAT
Found at i:84783344 original size:7 final size:7
Alignment explanation
Indices: 84783332--84783388 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 7
84783322 TTTATTTTGG
84783332 GGTTTAA
1 GGTTTAA
84783339 GGTTTAA
1 GGTTTAA
**
84783346 TATTTAA
1 GGTTTAA
* *
84783353 GGTCTAT
1 GGTTTAA
*
84783360 GGTTTAG
1 GGTTTAA
*
84783367 GGTTTTAT
1 GG-TTTAA
84783375 GGTTTAA
1 GGTTTAA
84783382 GGTTTAA
1 GGTTTAA
84783389 TGGCCATGGG
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
7 33 0.85
8 6 0.15
ACGTcount: A:0.25, C:0.02, G:0.26, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:84783377 original size:15 final size:15
Alignment explanation
Indices: 84783332--84783391 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
84783322 TTTATTTTGG
*
84783332 GGTTTAAGGTTTAAT
1 GGTTTAAGGTTTTAT
* *
84783347 -ATTTAAGG-TCTAT
1 GGTTTAAGGTTTTAT
*
84783360 GGTTTAGGGTTTTAT
1 GGTTTAAGGTTTTAT
*
84783375 GGTTTAAGGTTTAAT
1 GGTTTAAGGTTTTAT
84783390 GG
1 GG
84783392 CCATGGGTGT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
13 3 0.09
14 13 0.37
15 19 0.54
ACGTcount: A:0.23, C:0.02, G:0.28, T:0.47
Consensus pattern (15 bp):
GGTTTAAGGTTTTAT
Found at i:84783891 original size:8 final size:8
Alignment explanation
Indices: 84783878--84783916 Score: 57
Period size: 7 Copynumber: 5.2 Consensus size: 8
84783868 AAATTATATG
84783878 TTAGGGGT
1 TTAGGGGT
84783886 TTA-GGG-
1 TTAGGGGT
84783892 TTAGGGGT
1 TTAGGGGT
84783900 TTAGGGG-
1 TTAGGGGT
84783907 TTAGGGGT
1 TTAGGGGT
84783915 TT
1 TT
84783917 TGGGTTTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
6 3 0.11
7 13 0.46
8 12 0.43
ACGTcount: A:0.13, C:0.00, G:0.49, T:0.38
Consensus pattern (8 bp):
TTAGGGGT
Found at i:84783896 original size:14 final size:14
Alignment explanation
Indices: 84783877--84783922 Score: 74
Period size: 14 Copynumber: 3.2 Consensus size: 14
84783867 AAAATTATAT
84783877 GTTAGGGGTTTAGG
1 GTTAGGGGTTTAGG
84783891 GTTAGGGGTTTAGGG
1 GTTAGGGGTTTA-GG
*
84783906 GTTAGGGGTTTTGG
1 GTTAGGGGTTTAGG
84783920 GTT
1 GTT
84783923 TTGGGTTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.11, C:0.00, G:0.50, T:0.39
Consensus pattern (14 bp):
GTTAGGGGTTTAGG
Found at i:84783921 original size:7 final size:7
Alignment explanation
Indices: 84783911--84783935 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
84783901 TAGGGGTTAG
84783911 GGGTTTT
1 GGGTTTT
84783918 GGGTTTT
1 GGGTTTT
84783925 GGGTTTT
1 GGGTTTT
84783932 GGGT
1 GGGT
84783936 ATATGACTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (7 bp):
GGGTTTT
Found at i:84784407 original size:3 final size:3
Alignment explanation
Indices: 84784399--84784450 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
84784389 TTAGTAAATC
84784399 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
84784447 ATA A
1 ATA A
84784451 AAGAGAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:84786298 original size:3 final size:3
Alignment explanation
Indices: 84786290--84786314 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
84786280 AGCAACTGCA
84786290 GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT G
84786315 GAGCTCCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:84795342 original size:31 final size:31
Alignment explanation
Indices: 84795304--84795381 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
84795294 TTGACATATG
84795304 CTGGGCCGAAGCCTTTCCATAAATCATATCA
1 CTGGGCCGAAGCCTTTCCATAAATCATATCA
*
84795335 CTGGGCCGAAGCCTTTTCATAAATCATATCA
1 CTGGGCCGAAGCCTTTCCATAAATCATATCA
* * *
84795366 CTAGGCTGAAACCTTT
1 CTGGGCCGAAGCCTTT
84795382 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CTGGGCCGAAGCCTTTCCATAAATCATATCA
Found at i:84795452 original size:42 final size:42
Alignment explanation
Indices: 84795405--84795496 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
84795395 TGGCCCTTAG
*
84795405 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
84795447 GCCCATTTTAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
84795489 TCCCATTT
1 GCCCATTT
84795497 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.34
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:84795677 original size:25 final size:25
Alignment explanation
Indices: 84795644--84795713 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
84795634 CTCTTTTAAT
*
84795644 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
84795669 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
84795694 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
84795714 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 35 0.90
26 4 0.10
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:84796558 original size:27 final size:27
Alignment explanation
Indices: 84796528--84796579 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
84796518 TATTCATCAT
*
84796528 TTTACCATATAAGGGTATTACGGTCAC
1 TTTACCATACAAGGGTATTACGGTCAC
* * *
84796555 TTTACCCTACAGGGGTTTTACGGTC
1 TTTACCATACAAGGGTATTACGGTC
84796580 TTTTTACCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
TTTACCATACAAGGGTATTACGGTCAC
Found at i:84796648 original size:27 final size:27
Alignment explanation
Indices: 84796618--84796854 Score: 181
Period size: 27 Copynumber: 8.7 Consensus size: 27
84796608 TTTCATCCTA
* *
84796618 CAAGGGTGTTTTGGTAATTCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** **
84796645 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** * *
84796672 CAATGGTATTTTAATAATTTTTAAAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-C
* ** *
84796701 CAAGGGTATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
* *
84796728 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * *
84796755 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
84796781 CTAGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* *
84796809 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
84796836 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
84796855 CTATCCTACA
Statistics
Matches: 173, Mismatches: 31, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.02
27 140 0.81
28 15 0.09
29 14 0.08
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:84796790 original size:54 final size:54
Alignment explanation
Indices: 84796729--84796887 Score: 196
Period size: 54 Copynumber: 2.9 Consensus size: 54
84796719 TTTGTAAATC
*
84796729 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACT
* * * *
84796783 AGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACT
* ** **
84796837 AGGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTTAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
84796888 TCGAGGGTAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
54 86 0.95
55 5 0.05
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACT
Found at i:84796867 original size:27 final size:27
Alignment explanation
Indices: 84796729--84796881 Score: 168
Period size: 27 Copynumber: 5.7 Consensus size: 27
84796719 TTTGTAAATC
*
84796729 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTCTACAAACT
* *
84796755 TGAGGGTATTTCGGTAATT-TCACAAACT
1 AG-GGGTATTTTGGTAATTCT-ACAAACT
* * *
84796783 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
*
84796810 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
**
84796837 AGGGGTATTTTGGTAATTCTATCCTAC-
1 AGGGGTATTTTGGTAATTCTA-CAAACT
*
84796864 AGGGGTATTTTAGTAATT
1 AGGGGTATTTTGGTAATT
84796882 TCACAATCGA
Statistics
Matches: 112, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
26 2 0.02
27 104 0.93
28 6 0.05
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTCTACAAACT
Found at i:84796871 original size:81 final size:81
Alignment explanation
Indices: 84796729--84796887 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 81
84796719 TTTGTAAATC
* *
84796729 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTC
* *
84796794 GGTAATTTTACAAACT
66 AGTAATTTCACAAACT
* **
84796810 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCTAC-AGGGGTAT
1 AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTC-A-CAAACTAGGGGTAT
*
84796872 TTTAGTAATTTCACAA
63 TTCAGTAATTTCACAA
84796888 TCGAGGGTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
80 3 0.04
81 59 0.88
82 5 0.07
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTC
AGTAATTTCACAAACT
Found at i:84796920 original size:27 final size:27
Alignment explanation
Indices: 84796886--84797083 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
84796876 GTAATTTCAC
* *
84796886 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
84796913 AA-CTGAGGGTAAAATGGTAGTTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
**
84796940 AATCGAGGGTAAAAAAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
84796967 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
84796994 AATCAAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
84797021 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
84797048 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
84797075 AATCGAGGG
1 AATCGAGGG
84797084 CATTTCAGTA
Statistics
Matches: 149, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 147 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:84797003 original size:81 final size:81
Alignment explanation
Indices: 84796886--84797083 Score: 290
Period size: 81 Copynumber: 2.4 Consensus size: 81
84796876 GTAATTTCAC
* * * *
84796886 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAGTTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
*
84796950 AAAAAAGTAATTCTGTA
65 AAAAAAGTAATTCTATA
* *
84796967 AATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
**
84797032 AAACGGTAATTCTATA
66 AAAAAGTAATTCTATA
*
84797048 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
84797084 CATTTCAGTA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
AAAAAGTAATTCTATA
Found at i:84821203 original size:46 final size:46
Alignment explanation
Indices: 84821136--84821307 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
84821126 AACCCGCCCC
* *
84821136 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
84821182 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
84821230 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
84821275 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
84821308 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:84821248 original size:93 final size:93
Alignment explanation
Indices: 84821141--84821311 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
84821131 GCCCCTAAGT
* * *
84821141 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
84821206 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
84821234 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84821299 CGAGTTCGGATGC
66 CGAGTTCGGATGC
84821312 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84825162 original size:68 final size:66
Alignment explanation
Indices: 84825097--84825304 Score: 189
Period size: 67 Copynumber: 3.2 Consensus size: 66
84825087 CATCATGTGT
*
84825097 ACAAGAGAGCTACAAGACATTATAATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AGAGA-TATAATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATG
84825162 TAG
64 TAG
* ** * * * *
84825165 ACAAGAGAGCTACAG-GATAT-ATGTAGCTAGGTCGCATGCATGGCT-CCAGGTGAAGGACACCA
1 ACAAGAGAGCTACAGAGATATAATGTAGCTAGGTCACATGGGT-GATACTA--TG-TGTACACCA
84825227 TGTAG
62 TGTAG
* * *
84825232 ACAAGAGAGCTAC-GAGATA-AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT
1 ACAAGAGAGCTACAGAGATATAATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGT
84825293 -G
65 AG
84825294 TACAAGAGAGC
1 -ACAAGAGAGC
84825305 GAACTCTATG
Statistics
Matches: 114, Mismatches: 17, Indels: 23
0.74 0.11 0.15
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 21 0.18
65 7 0.06
66 19 0.17
67 34 0.30
68 13 0.11
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACAGAGATATAATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTA
G
Found at i:84830193 original size:40 final size:40
Alignment explanation
Indices: 84830117--84830301 Score: 156
Period size: 41 Copynumber: 4.6 Consensus size: 40
84830107 ATTCAATATC
* * * * * *
84830117 TCGCACGCTAAGTGCCGTACATTACTGACGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAACCGAAGCTATCTCAAA
* *
84830157 TCGCACACTAAGTGCCATATATAACCGAAGCCATCTC-GA
1 TCGCACACTAAGTGCCATATATAACCGAAGCTATCTCAAA
* * * * *
84830196 TCTCACATAGTAAGTGCCATATATAGCCGAAACTATCTCAATC
1 TCGCAC--ACTAAGTGCCATATATAACCGAAGCTATCTCAA-A
* * * * *
84830239 TCGCACACTAAATGCCATATATAGCCAAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAACCGAAGCTATCTCAAA
* *
84830279 CCGCACACTAAGTGCCACATATA
1 TCGCACACTAAGTGCCATATATA
84830302 GCTGATTTGT
Statistics
Matches: 115, Mismatches: 26, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
39 6 0.05
40 50 0.43
41 54 0.47
43 5 0.04
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAACCGAAGCTATCTCAAA
Found at i:84830262 original size:41 final size:40
Alignment explanation
Indices: 84830147--84830303 Score: 165
Period size: 41 Copynumber: 3.9 Consensus size: 40
84830137 ATTACTGACG
* * *
84830147 CTATCTCAAATCGCACACTAAGTGCCATATATAACCGAAG
1 CTATCTCAACTCGCACACTAAGTGCCATATATAGCCGAAA
* * * * *
84830187 CCATCTCGATCTCACATAGTAAGTGCCATATATAGCCGAAA
1 CTATCTC-AACTCGCACACTAAGTGCCATATATAGCCGAAA
*
84830228 CTATCTCAATCTCGCACACTAAATGCCATATATAGCC-AAA
1 CTATCTCAA-CTCGCACACTAAGTGCCATATATAGCCGAAA
* *
84830268 GCTATGTCGAAC-CGCACACTAAGTGCCACATATAGC
1 -CTATCTC-AACTCGCACACTAAGTGCCATATATAGC
84830304 TGATTTGTTG
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
40 32 0.33
41 62 0.65
42 2 0.02
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (40 bp):
CTATCTCAACTCGCACACTAAGTGCCATATATAGCCGAAA
Found at i:84839048 original size:48 final size:48
Alignment explanation
Indices: 84838966--84839236 Score: 355
Period size: 48 Copynumber: 5.6 Consensus size: 48
84838956 ACTCAAAAGT
* * * *
84838966 CTCGCACCCTAGGTGCCAATATCATAGCCCGAAGCCAAATCAATG-AA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* * *
84839013 GCTCGCACCCGAAGTGCCAATACCATGGCCTGAAGCCAAATCAATGTAA
1 -CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* *
84839062 CTCGCACCCGAAGTGCTAATATCATGGTCCGAAGCCAAATAAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* * *
84839110 CTCGCACCTGAAGTGCTAATATCATGGCCCAAAGCCAAATTAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
** * * *
84839158 CTCGTGCCTGAAGTGCTAATATCATGGCCTGTAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
**
84839206 CTCGCACCTAAAGTGCTAATATCATGGCCCG
1 CTCGCACCCGAAGTGCTAATATCATGGCCCG
84839237 TAGAGAAATT
Statistics
Matches: 198, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
48 196 0.99
49 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
Found at i:84845275 original size:45 final size:45
Alignment explanation
Indices: 84845219--84845309 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
84845209 GAATTATGTA
* * *
84845219 ATCCGAACTCATTGAGTTGTGGTCTGAATTCATGATATATGTGAC
1 ATCCAAACTCATTAAGATGTGGTCTGAATTCATGATATATGTGAC
* *
84845264 ATCCAAACTCATTAAGATGTGGTCTGAGTTCGTGATATATGTGAC
1 ATCCAAACTCATTAAGATGTGGTCTGAATTCATGATATATGTGAC
84845309 A
1 A
84845310 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (45 bp):
ATCCAAACTCATTAAGATGTGGTCTGAATTCATGATATATGTGAC
Found at i:84851915 original size:22 final size:22
Alignment explanation
Indices: 84851886--84851941 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
84851876 ATCCTGTAAC
* *
84851886 TTTT-TGAAACTCTGTTTAGAA
1 TTTTCTGAAACTATGATTAGAA
*
84851907 TTTTCTGAAAGTATGATTAGAA
1 TTTTCTGAAACTATGATTAGAA
* *
84851929 TATACTGAAACTA
1 TTTTCTGAAACTA
84851942 CTTTAAGTAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (22 bp):
TTTTCTGAAACTATGATTAGAA
Found at i:84859208 original size:19 final size:19
Alignment explanation
Indices: 84859184--84859234 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
84859174 GACATAGGGA
* *
84859184 CACGCCCGTGTGCCTTTGG
1 CACGCCCGTGTACCTTTAG
*
84859203 CACGCCAGTGTACCTTTAG
1 CACGCCCGTGTACCTTTAG
*
84859222 CATGCCCGTGTAC
1 CACGCCCGTGTAC
84859235 TCAGGTCGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.14, C:0.35, G:0.25, T:0.25
Consensus pattern (19 bp):
CACGCCCGTGTACCTTTAG
Found at i:84861230 original size:49 final size:49
Alignment explanation
Indices: 84861160--84861330 Score: 172
Period size: 49 Copynumber: 3.6 Consensus size: 49
84861150 CATCAAAGTC
* *
84861160 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCT
1 GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGCT
* * * * * * * *
84861209 GATGTCGTGTCCTAGATAGGTCTTACACTGGCTCTCATCTATTGGGGTT
1 GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGCT
* * * *
84861258 GATGCCATGTCCCAGATAGTTCTTACACTGA--CACACA-A-C-AAGCT
1 GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGCT
*
84861302 GACGCCATGTCCCAGATAGGTCTTACACT
1 GATGCCATGTCCCAGATAGGTCTTACACT
84861331 AGCTCTCGTC
Statistics
Matches: 98, Mismatches: 24, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
44 29 0.30
46 1 0.01
47 3 0.03
49 65 0.66
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (49 bp):
GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGCT
Found at i:84862988 original size:36 final size:36
Alignment explanation
Indices: 84862948--84863020 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
84862938 GCTTTCGATG
* *
84862948 TATGTTTCGGGTATTGTAGTCCCTTATAATGGACAA
1 TATGTTTCGGGTATTGTAGACCCTTATAAGGGACAA
* *
84862984 TATGTTTTGGGTTTTGTAGACCCTTATAAGGGACAA
1 TATGTTTCGGGTATTGTAGACCCTTATAAGGGACAA
84863020 T
1 T
84863021 TTGCATGTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (36 bp):
TATGTTTCGGGTATTGTAGACCCTTATAAGGGACAA
Found at i:84865789 original size:3 final size:3
Alignment explanation
Indices: 84865781--84865867 Score: 174
Period size: 3 Copynumber: 29.0 Consensus size: 3
84865771 GGATGTTTTA
84865781 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
84865829 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
84865868 TAGTATGTTT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:84868394 original size:20 final size:21
Alignment explanation
Indices: 84868350--84868395 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
84868340 ACTGTTTTGC
84868350 TATGGG-CCAACTATATTGAA
1 TATGGGCCCAACTATATTGAA
* *
84868370 -GTGGGCCCAACTATGTT-AA
1 TATGGGCCCAACTATATTGAA
84868389 TATGGGC
1 TATGGGC
84868396 AAGGCCCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTATATTGAA
Found at i:84872974 original size:33 final size:33
Alignment explanation
Indices: 84872848--84872975 Score: 107
Period size: 33 Copynumber: 3.9 Consensus size: 33
84872838 GGCAGTGTTT
* *
84872848 ATATGTAAGACCATAGCTGGGCTATGGC-ATTC
1 ATATGTAAGACCATAGTTGGGCTATGGCAATAC
* *
84872880 -TGATGATAAGACCATAATTGGGCTATGGCACTAC
1 AT-ATG-TAAGACCATAGTTGGGCTATGGCAATAC
* * * *** * *
84872914 AAATTTAAGACCATGGCAAGGCCATGGCAATGC
1 ATATGTAAGACCATAGTTGGGCTATGGCAATAC
*
84872947 ATATGTAAGACCATAGTTGGACTATGGCA
1 ATATGTAAGACCATAGTTGGGCTATGGCA
84872976 TAATCGAAAA
Statistics
Matches: 70, Mismatches: 22, Indels: 7
0.71 0.22 0.07
Matches are distributed among these distances:
31 1 0.01
32 3 0.04
33 62 0.89
34 4 0.06
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (33 bp):
ATATGTAAGACCATAGTTGGGCTATGGCAATAC
Found at i:84883116 original size:73 final size:73
Alignment explanation
Indices: 84883026--84883176 Score: 302
Period size: 73 Copynumber: 2.1 Consensus size: 73
84883016 ATGACTGCTC
84883026 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTTTCTTTTTATATCCTACAGGTAGGAAAG
1 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTTTCTTTTTATATCCTACAGGTAGGAAAG
84883091 CTTCATAA
66 CTTCATAA
84883099 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTTTCTTTTTATATCCTACAGGTAGGAAAG
1 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTTTCTTTTTATATCCTACAGGTAGGAAAG
84883164 CTTCATAA
66 CTTCATAA
84883172 TTAAT
1 TTAAT
84883177 ACGTGGTGTT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 78 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (73 bp):
TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTTTCTTTTTATATCCTACAGGTAGGAAAG
CTTCATAA
Found at i:84887107 original size:13 final size:13
Alignment explanation
Indices: 84887089--84887130 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
84887079 TCTCTCTATG
84887089 ATTTTTTTATGTA
1 ATTTTTTTATGTA
**
84887102 ATTTTTTGCTGTA
1 ATTTTTTTATGTA
*
84887115 CTTTTTTTAT-TA
1 ATTTTTTTATGTA
84887127 ATTT
1 ATTT
84887131 ATATATTTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
12 5 0.22
13 18 0.78
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.69
Consensus pattern (13 bp):
ATTTTTTTATGTA
Found at i:84887973 original size:27 final size:28
Alignment explanation
Indices: 84887943--84888001 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
84887933 TATTTTAATT
84887943 TTTTATATGTT-T-ATATATATTTATAAA
1 TTTTATA-GTTATCATATATATTTATAAA
* *
84887970 TTTT-TAGTTATCTTATATATTTATATA
1 TTTTATAGTTATCATATATATTTATAAA
84887997 TTTTA
1 TTTTA
84888002 AAATTTACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 3 0.11
26 3 0.11
27 21 0.78
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (28 bp):
TTTTATAGTTATCATATATATTTATAAA
Found at i:84888270 original size:2 final size:2
Alignment explanation
Indices: 84888263--84888294 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
84888253 TTGATGTGAA
84888263 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84888295 CTTTTTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84890031 original size:48 final size:48
Alignment explanation
Indices: 84889997--84890367 Score: 440
Period size: 48 Copynumber: 7.7 Consensus size: 48
84889987 TTGCCAACGT
* * * *
84889997 CATGTCCCAAACATGGTCTTACACTGGCACACATATTATAT-TCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCAT-TGTCGATGC
*
84890045 CATGTCTCAGACATGGTCTTACACAGGCACATATATCATTGTCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATTGTCGATGC
* * *
84890093 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATT-TCTGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATTGTC-GATGC
* ***
84890141 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATTGTCGATGC
* *
84890189 CATGTCCCAAACATGGTCTTACATAGGCACATATATCATCGTCGTCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCAT--T-GTCGATGC
* * *
84890240 CATATCCCAGACATGGTCTTACACAGGCATATATATCATCGTCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATTGTCGATGC
* * * * *** *
84890288 CATATCCCAGACATGGTCTTACACAGGCACATTTTTTATCACCAATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATATATCATTGTCGATGC
* *
84890336 TATGTCCCAGACATGGTCTTACACAAGCACAT
1 CATGTCCCAGACATGGTCTTACACAGGCACAT
84890368 TTAGCATGGT
Statistics
Matches: 281, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
47 3 0.01
48 236 0.84
49 1 0.00
51 41 0.15
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACAGGCACATATATCATTGTCGATGC
Found at i:84890287 original size:195 final size:192
Alignment explanation
Indices: 84889997--84890370 Score: 525
Period size: 195 Copynumber: 1.9 Consensus size: 192
84889987 TTGCCAACGT
* * *
84889997 CATGTCCCAAACATGGTCTTACACTGGCACACATATTATATTCGATGCCATGTCTCAGACATGGT
1 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATATTCGATGCCATATCCCAGACATGGT
* * *
84890062 CTTACACAGGCACATATATCATTGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACAT
66 CTTACACAGGCACATATATCATCGTCGATGCCATATCCCAAACATGGTCTTACACAGGCACACAT
** ** *
84890127 ATCATTTCTGATGCCATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
131 ATCATCACCAATGCCATGTCCCAGACATGGTCTTACACAAGCACATTTATCATCACCGATGC
* *
84890189 CATGTCCCAAACATGGTCTTACA-TAGGCACATATATCATCGTCGTCGATGCCATATCCCAGACA
1 CATGTCCCAAACATGGTCTTACACT-GGCACACATATCAT-AT--TCGATGCCATATCCCAGACA
* *
84890253 TGGTCTTACACAGGCATATATATCATCGTCGATGCCATATCCCAGACATGGTCTTACACAGGCAC
62 TGGTCTTACACAGGCACATATATCATCGTCGATGCCATATCCCAAACATGGTCTTACACAGGCAC
** * * *
84890318 ATTTTTTATCACCAATGCTATGTCCCAGACATGGTCTTACACAAGCACATTTA
127 ACATATCATCACCAATGCCATGTCCCAGACATGGTCTTACACAAGCACATTTA
84890371 GCATGGTGTC
Statistics
Matches: 158, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
191 1 0.01
192 35 0.22
193 1 0.01
195 121 0.77
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (192 bp):
CATGTCCCAAACATGGTCTTACACTGGCACACATATCATATTCGATGCCATATCCCAGACATGGT
CTTACACAGGCACATATATCATCGTCGATGCCATATCCCAAACATGGTCTTACACAGGCACACAT
ATCATCACCAATGCCATGTCCCAGACATGGTCTTACACAAGCACATTTATCATCACCGATGC
Found at i:84894505 original size:18 final size:18
Alignment explanation
Indices: 84894477--84894540 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
84894467 GAACAATTAA
* *
84894477 TTATTTAGTAATAGTCAG
1 TTATTCAGTAATAATCAG
* * *
84894495 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAATCAG
*
84894513 TTATTCAATAATAATCAG
1 TTATTCAGTAATAATCAG
84894531 TTATTCAGTA
1 TTATTCAGTA
84894541 TCAATCAACT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (18 bp):
TTATTCAGTAATAATCAG
Found at i:84894508 original size:36 final size:36
Alignment explanation
Indices: 84894455--84894548 Score: 109
Period size: 36 Copynumber: 2.6 Consensus size: 36
84894445 TTCATTAACG
* * * * *
84894455 ATCAGTCAATCAG-AACAATTAATTATTTAGTAATA
1 ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
* *
84894490 GTCAGTTATTCGGTAACAATCAATTATTCAATAATA
1 ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
*
84894526 ATCAGTTATTCAGTATCAATCAA
1 ATCAGTTATTCAGTAACAATCAA
84894549 CTGATTGGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 9 0.19
36 39 0.81
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (36 bp):
ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
Found at i:84894546 original size:18 final size:18
Alignment explanation
Indices: 84894491--84894547 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
84894481 TTAGTAATAG
* *
84894491 TCAGTTATTCGGTAACAA
1 TCAGTTATTCAGTATCAA
* *
84894509 TCAATTATTCAATAAT-AA
1 TCAGTTATTCAGT-ATCAA
84894527 TCAGTTATTCAGTATCAA
1 TCAGTTATTCAGTATCAA
84894545 TCA
1 TCA
84894548 ACTGATTGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 2 0.06
18 28 0.90
19 1 0.03
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (18 bp):
TCAGTTATTCAGTATCAA
Found at i:84894583 original size:18 final size:18
Alignment explanation
Indices: 84894557--84894627 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
84894547 AACTGATTGG
*
84894557 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
84894575 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAGTCA-A
* * *
84894594 -TATACAGTAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
*
84894612 TTATTCGGTAACAGTC
1 TTATTCAGTAACAGTC
84894628 GATCTTTCCA
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
18 26 0.67
19 13 0.33
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.31
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:84894806 original size:53 final size:53
Alignment explanation
Indices: 84894746--84894865 Score: 159
Period size: 53 Copynumber: 2.3 Consensus size: 53
84894736 CAGGAACAGT
*
84894746 AACAGTAACAGTAGCAGTACAGTACACAGAATACCTCATCGAAACAAATCCGA
1 AACAGTAACAGTAACAGTACAGTACACAGAATACCTCATCGAAACAAATCCGA
* * * * * *
84894799 AACAGTAACAGTAACATTACGGTACACAGAGTGCCTCATCGGAACAAATCTGA
1 AACAGTAACAGTAACAGTACAGTACACAGAATACCTCATCGAAACAAATCCGA
* *
84894852 AATAATAACAGTAA
1 AACAGTAACAGTAA
84894866 TGTAACAGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 58 1.00
ACGTcount: A:0.45, C:0.22, G:0.16, T:0.17
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACAGTACACAGAATACCTCATCGAAACAAATCCGA
Found at i:84897882 original size:38 final size:38
Alignment explanation
Indices: 84897839--84897911 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
84897829 ACATATTTAA
84897839 TATTTAGTCTATATAAAGAAACAAATATAAAAAAACCC
1 TATTTAGTCTATATAAAGAAACAAATATAAAAAAACCC
*
84897877 TATTTAGTCTATATAAAGAAACAAATTTAAAAAAA
1 TATTTAGTCTATATAAAGAAACAAATATAAAAAAA
84897912 AAAAACCCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.29
Consensus pattern (38 bp):
TATTTAGTCTATATAAAGAAACAAATATAAAAAAACCC
Found at i:84906641 original size:21 final size:21
Alignment explanation
Indices: 84906602--84906642 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
84906592 CATCGTGGCA
*
84906602 AGTTAACTTGCCATATCAGCT
1 AGTTAACTTGCCACATCAGCT
*
84906623 AGTTAACTTGCCACGTCAGC
1 AGTTAACTTGCCACATCAGC
84906643 AATTCTGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (21 bp):
AGTTAACTTGCCACATCAGCT
Found at i:84907524 original size:13 final size:13
Alignment explanation
Indices: 84907492--84907518 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84907482 AAATATACAT
84907492 AAAATAAAATATA
1 AAAATAAAATATA
84907505 AAAATAAAATATA
1 AAAATAAAATATA
84907518 A
1 A
84907519 TTATAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAATAAAATATA
Found at i:84913379 original size:44 final size:45
Alignment explanation
Indices: 84913289--84913417 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
84913279 GACAGAACGA
*
84913289 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
84913335 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
84913379 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
84913418 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:84914996 original size:38 final size:38
Alignment explanation
Indices: 84914954--84915030 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
84914944 TTCTAGTAGC
*
84914954 TAGAAGGACTAAATAGCTATGGAATTTAAAACTTGAGG
1 TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
*
84914992 TAGAAGGATTAAATAGCTATGGAATTCAAAACTTGAGG
1 TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
84915030 T
1 T
84915031 CCTTATATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (38 bp):
TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
Found at i:84917106 original size:29 final size:27
Alignment explanation
Indices: 84917072--84917174 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
84917062 TACTCGATCA
*
84917072 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
84917101 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
84917130 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
84917159 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
84917175 ATCTCGTCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:84919774 original size:93 final size:93
Alignment explanation
Indices: 84919662--84919833 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84919652 GCCCATAAGT
* *
84919662 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84919727 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
84919755 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84919820 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
84919834 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84919829 original size:46 final size:46
Alignment explanation
Indices: 84919654--84919829 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
84919644 TGTAACCCGC
* * *
84919654 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
84919700 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
84919750 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
84919793 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84919830 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:84927669 original size:29 final size:29
Alignment explanation
Indices: 84927581--84927683 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
84927571 TACTCGATCA
** *
84927581 CGCACACTTAGTGCCATGTGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ACATTTCAAGCT
* * * * * *
84927610 CGCATACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACATTTCAAGCT
84927639 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAGCT
*
84927668 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
84927684 ATCTCGTCAT
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 2 0.03
29 56 0.97
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCAAGCT
Found at i:84929622 original size:57 final size:57
Alignment explanation
Indices: 84929524--84929649 Score: 139
Period size: 57 Copynumber: 2.2 Consensus size: 57
84929514 TTACAGAAAA
* * * * * *
84929524 GATTTAGCCTGGACTGATAATCCTGATATAAGCCTCTTGAGCATATTTTATAGATAG
1 GATTTAGCTTGGACGGATAATCCTGATATAAGCCTCTTGAGCATATGTTAGAAACAG
* * *
84929581 GATTTAGCTTGGACGGGTAATCTTGAT-TAAG-CTCTTATGAGCATATGTTGGAAACAG
1 GATTTAGCTTGGACGGATAATCCTGATATAAGCCTC-T-TGAGCATATGTTAGAAACAG
84929638 GATTTAGCTTGG
1 GATTTAGCTTGG
84929650 GCAAGTAATC
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
55 3 0.05
56 5 0.09
57 50 0.86
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (57 bp):
GATTTAGCTTGGACGGATAATCCTGATATAAGCCTCTTGAGCATATGTTAGAAACAG
Found at i:84930870 original size:21 final size:21
Alignment explanation
Indices: 84930844--84930897 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
84930834 CAGCCTGTAG
84930844 CACGGGCGTGTCTGAAGGTCA
1 CACGGGCGTGTCTGAAGGTCA
*
84930865 CACGGGCGTGTCTTAAGGTCA
1 CACGGGCGTGTCTGAAGGTCA
84930886 CACGGGCGTGTC
1 CACGGGCGTGTC
84930898 CCTAGACTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.20
Consensus pattern (21 bp):
CACGGGCGTGTCTGAAGGTCA
Found at i:84935155 original size:39 final size:39
Alignment explanation
Indices: 84935017--84935201 Score: 228
Period size: 40 Copynumber: 4.7 Consensus size: 39
84935007 TCGGATGATA
* * ** *
84935017 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-TATTAT
* * *
84935057 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
84935096 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
* * *
84935136 ACCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
84935175 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
84935202 AGCTAGTGGC
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 38 0.30
40 87 0.69
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
Found at i:84935215 original size:40 final size:40
Alignment explanation
Indices: 84935014--84935224 Score: 216
Period size: 40 Copynumber: 5.3 Consensus size: 40
84935004 TGTTCGGATG
* * *
84935014 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTGACT
* * *
84935054 A-ATTCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCT-ATT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
* * *
84935094 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
84935134 AT-ACCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
84935173 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
84935213 ATATCC-GGCTAA
1 ATAACCGGGCTAA
84935225 ACTCCAAAGG
Statistics
Matches: 148, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 43 0.29
40 101 0.68
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:84935223 original size:79 final size:80
Alignment explanation
Indices: 84935014--84935224 Score: 277
Period size: 79 Copynumber: 2.7 Consensus size: 80
84935004 TGTTCGGATG
*
84935014 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCAGAAGG
* * *
84935077 CGTTTGTGCGAGCTATT
64 CATTTGTGCAAGCTACT
* * * ***
84935094 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCAGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCAGAAGGCA
*
84935158 TTTGTGCAAGTTACT
66 TTTGTGCAAGCTACT
84935173 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAA
84935225 ACTCCAAAGG
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 74 0.67
80 34 0.31
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCAGAAGGCA
TTTGTGCAAGCTACT
Found at i:84944098 original size:15 final size:16
Alignment explanation
Indices: 84944078--84944108 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84944068 AAAGAATGCC
84944078 AACATT-AGCAAAACA
1 AACATTCAGCAAAACA
84944093 AACATTCAGCAAAACA
1 AACATTCAGCAAAACA
84944109 TTTCATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.58, C:0.23, G:0.06, T:0.13
Consensus pattern (16 bp):
AACATTCAGCAAAACA
Found at i:84946434 original size:27 final size:28
Alignment explanation
Indices: 84946404--84946473 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
84946394 ATAATAAGTC
*
84946404 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
84946431 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
84946459 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84946474 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84954358 original size:27 final size:28
Alignment explanation
Indices: 84954328--84954397 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
84954318 ATAATAAGTC
*
84954328 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
84954355 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
84954383 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84954398 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84964794 original size:13 final size:13
Alignment explanation
Indices: 84964772--84964820 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
84964762 ACACTGTTAA
*
84964772 ACTTTTTCAAAGC
1 ACTTTCTCAAAGC
84964785 ACTTTCTCAAAGC
1 ACTTTCTCAAAGC
* *
84964798 ACTTTCTCATAGT
1 ACTTTCTCAAAGC
84964811 ACTTT-TCAAA
1 ACTTTCTCAAA
84964821 AGCATTTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 4 0.12
13 28 0.88
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (13 bp):
ACTTTCTCAAAGC
Found at i:84965727 original size:19 final size:19
Alignment explanation
Indices: 84965703--84965740 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
84965693 TTCTATTTAT
84965703 TTGAACAATGACTAAATAA
1 TTGAACAATGACTAAATAA
84965722 TTGAACAATGACTAAATAA
1 TTGAACAATGACTAAATAA
84965741 ATAAAGTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (19 bp):
TTGAACAATGACTAAATAA
Found at i:84966978 original size:9 final size:9
Alignment explanation
Indices: 84966961--84966990 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
84966951 TTGATAGTAA
*
84966961 AATTTAATT
1 AATTAAATT
84966970 AATTAAATT
1 AATTAAATT
84966979 AATTAAATT
1 AATTAAATT
84966988 AAT
1 AAT
84966991 ATGATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
AATTAAATT
Found at i:84967173 original size:35 final size:35
Alignment explanation
Indices: 84967127--84967197 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
84967117 TGAGATCATG
84967127 ACCTAAAAACTGGTCGAACCAGGCCCAATATGTGA
1 ACCTAAAAACTGGTCGAACCAGGCCCAATATGTGA
84967162 ACCTAAAAACTGGTCGAACCAGGCCCAATATGTGA
1 ACCTAAAAACTGGTCGAACCAGGCCCAATATGTGA
84967197 A
1 A
84967198 ACCGAGCCGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (35 bp):
ACCTAAAAACTGGTCGAACCAGGCCCAATATGTGA
Found at i:84967611 original size:62 final size:62
Alignment explanation
Indices: 84967540--84967656 Score: 225
Period size: 62 Copynumber: 1.9 Consensus size: 62
84967530 AATACTTTTC
*
84967540 TTGTAGATAAGCATTCTATTATTTTAATAAGATTTAATATTAAATTTAATTTAATGCATATT
1 TTGTAGATAAACATTCTATTATTTTAATAAGATTTAATATTAAATTTAATTTAATGCATATT
84967602 TTGTAGATAAACATTCTATTATTTTAATAAGATTTAATATTAAATTTAATTTAAT
1 TTGTAGATAAACATTCTATTATTTTAATAAGATTTAATATTAAATTTAATTTAAT
84967657 ATTTATTTTG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (62 bp):
TTGTAGATAAACATTCTATTATTTTAATAAGATTTAATATTAAATTTAATTTAATGCATATT
Found at i:84971604 original size:39 final size:39
Alignment explanation
Indices: 84971545--84971683 Score: 140
Period size: 39 Copynumber: 3.6 Consensus size: 39
84971535 AACACACCAG
*
84971545 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTATAA
1 TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTATAA
* * **
84971584 TTTGACACCCAGTGTCTCATCGGCTAAACCGAAGTA-AA
1 TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTATAA
* * *
84971622 -TTGGCATCCAGTGCCTCATCGAAT-ATATCTGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAAT-TC-GAAGT-ATAA
* *
84971662 ATTGACACCCAGTGTCTCATCG
1 TTTGACACCCAGTGCCTCATCG
84971684 ACTCGAAGTC
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
36 1 0.01
37 20 0.25
38 7 0.09
39 32 0.40
40 2 0.03
41 18 0.22
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (39 bp):
TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTATAA
Found at i:84973494 original size:30 final size:30
Alignment explanation
Indices: 84973458--84973519 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
84973448 ATTGACATGG
84973458 TTCATCCAATGTTAAGCTATTCACAACTTC
1 TTCATCCAATGTTAAGCTATTCACAACTTC
84973488 TTCATCCAATGTTAAGCTATTCACAACTTC
1 TTCATCCAATGTTAAGCTATTCACAACTTC
84973518 TT
1 TT
84973520 ACTTTTTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.39
Consensus pattern (30 bp):
TTCATCCAATGTTAAGCTATTCACAACTTC
Found at i:84984100 original size:23 final size:23
Alignment explanation
Indices: 84984073--84984118 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
84984063 AAAATATGTA
*
84984073 TAAATTACGGTTTATCAAATACC
1 TAAATTACGATTTATCAAATACC
*
84984096 TAAATTATGATTTATCAAATACC
1 TAAATTACGATTTATCAAATACC
84984119 CCCACACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (23 bp):
TAAATTACGATTTATCAAATACC
Found at i:84984715 original size:3 final size:3
Alignment explanation
Indices: 84984707--84984740 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
84984697 GTATGTATTG
84984707 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
84984741 TTAGAACAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:84989830 original size:16 final size:16
Alignment explanation
Indices: 84989809--84989839 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84989799 TTCACTATTA
*
84989809 TGTCTTTTGTATTTTT
1 TGTCTTTTATATTTTT
84989825 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
84989840 GCATACATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTT
Found at i:84991330 original size:14 final size:14
Alignment explanation
Indices: 84991311--84991337 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84991301 CGATAGTCGA
84991311 CGGTGGTTGGTCAT
1 CGGTGGTTGGTCAT
84991325 CGGTGGTTGGTCA
1 CGGTGGTTGGTCA
84991338 GTGTAAGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.15, G:0.44, T:0.33
Consensus pattern (14 bp):
CGGTGGTTGGTCAT
Found at i:84999963 original size:40 final size:40
Alignment explanation
Indices: 84999885--85000069 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
84999875 AGCTACTGCT
84999885 CAAATGCCTTCGGGACTTAGCCC-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
84999924 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
84999964 CAATTGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
85000004 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
85000043 CAAATGCCTTCGGG-CTTAG-CCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
85000070 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
38 7 0.05
39 64 0.46
40 67 0.49
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:84999987 original size:79 final size:78
Alignment explanation
Indices: 84999863--85000069 Score: 305
Period size: 79 Copynumber: 2.7 Consensus size: 78
84999853 CCTTCGGGGT
*
84999863 TTAG-CCGGATATAGCT-ACT-GCTCAAATGCCTTCGGGACTTAGCCCGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGTTATAGTAACTCGCAC
*
84999925 AATTGCCTTCGGGAC
65 AAATGCCTTC-GGAC
* * *
84999940 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GTTATAGTAACTCGCAC
85000005 AAATGCCTTCGGAC
65 AAATGCCTTCGGAC
*
85000019 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCGGTTAT
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGTTAT
85000070 CAATCCGAAT
Statistics
Matches: 117, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
77 10 0.09
78 18 0.15
79 63 0.54
80 26 0.22
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (78 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGTTATAGTAACTCGCACA
AATGCCTTCGGAC
Found at i:85007893 original size:39 final size:40
Alignment explanation
Indices: 85007816--85007994 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
85007806 AAACCAAGTA
* * *
85007816 CCTTCGGG-TTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
85007854 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
85007893 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
85007933 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
85007973 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
85007995 CAATCCGAAT
Statistics
Matches: 132, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
38 8 0.06
39 57 0.43
40 67 0.51
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:85007965 original size:79 final size:79
Alignment explanation
Indices: 85007816--85007994 Score: 283
Period size: 79 Copynumber: 2.3 Consensus size: 79
85007806 AAACCAAGTA
* * * *
85007816 CCTTCGGGTTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGGCTTAGCCCGGTTATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
85007880 AACTCGCAC-AATG
66 AACTCGCACAAATG
85007893 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGG-CTTAGCCCGGTTATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
85007957 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
85007973 CCTTCGGGCTTAGCCCGGTTAT
1 CCTTCGGGCTTAGCCCGGTTAT
85007995 CAATCCGAAT
Statistics
Matches: 94, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
77 8 0.09
78 5 0.05
79 69 0.73
80 12 0.13
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
CCTTCGGGCTTAGCCCGGTTATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:85009653 original size:40 final size:39
Alignment explanation
Indices: 85009609--85009832 Score: 279
Period size: 40 Copynumber: 5.7 Consensus size: 39
85009599 GCCACTAGCT
*
85009609 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
85009649 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
85009688 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
85009728 CAAACGCCTTCGGGACTTAGCCCGGAATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
** * ** * *
85009767 TGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
85009807 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
85009833 TATCATCCGA
Statistics
Matches: 164, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 75 0.46
40 89 0.54
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:85009707 original size:79 final size:78
Alignment explanation
Indices: 85009609--85009832 Score: 279
Period size: 79 Copynumber: 2.8 Consensus size: 78
85009599 GCCACTAGCT
*
85009609 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
85009674 TATAATAACTCGCA
65 TATAATAACTCGCA
* * * *
85009688 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
85009753 AATAGTAGCTCGCA
65 TATAATAACTCGCA
** * ** *
85009767 TGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
85009831 GT
64 GT
85009833 TATCATCCGA
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 3 0.02
79 121 0.98
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:85014314 original size:27 final size:28
Alignment explanation
Indices: 85014257--85014326 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
85014247 AAATTTGTAC
**
85014257 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
85014285 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
85014312 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85014327 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:85014335 original size:27 final size:27
Alignment explanation
Indices: 85014257--85014338 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
85014247 AAATTTGTAC
* *
85014257 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
85014285 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
85014312 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
85014339 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:85022240 original size:27 final size:28
Alignment explanation
Indices: 85022183--85022252 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
85022173 AAATTTGTAC
**
85022183 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
85022211 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
85022238 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
85022253 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:85022261 original size:27 final size:27
Alignment explanation
Indices: 85022183--85022264 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
85022173 AAATTTGTAC
* *
85022183 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
85022211 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
85022238 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
85022265 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:85027733 original size:20 final size:20
Alignment explanation
Indices: 85027672--85027734 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
85027662 TGGCGGGCTA
85027672 TGGATGATGTTACTCGGTGG
1 TGGATGATGTTACTCGGTGG
* ** *
85027692 TGGA-GGTGTTGGTGGGCT-G
1 TGGATGATGTTACTCGG-TGG
*
85027711 TGGATGATGTTACTTGGTGG
1 TGGATGATGTTACTCGGTGG
85027731 TGGA
1 TGGA
85027735 GGTGTCGGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 14 0.44
20 18 0.56
ACGTcount: A:0.13, C:0.06, G:0.46, T:0.35
Consensus pattern (20 bp):
TGGATGATGTTACTCGGTGG
Found at i:85037054 original size:25 final size:25
Alignment explanation
Indices: 85037026--85037098 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
85037016 GGCCAATCAG
*
85037026 AATACGCCGCAAAGGTAACATACAT
1 AATACGCCACAAAGGTAACATACAT
* *
85037051 AATATGCCACAAAGGTAATATACAT
1 AATACGCCACAAAGGTAACATACAT
* *
85037076 AATACACCACAAAAGCTAACATA
1 AATACGCCAC-AAAGGTAACATA
85037099 TTATGCCACA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 30 0.75
26 10 0.25
ACGTcount: A:0.49, C:0.22, G:0.11, T:0.18
Consensus pattern (25 bp):
AATACGCCACAAAGGTAACATACAT
Found at i:85040196 original size:30 final size:31
Alignment explanation
Indices: 85040133--85040197 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
85040123 TATTAATCAT
* *
85040133 TGACTGTTTTGTTACTTTTTTATAATGTTAG
1 TGACTGTTTTGTTACTTTTTCATAAAGTTAG
85040164 TGACTGTTTTGTTA-TTTTTCA-AAAGTTGAG
1 TGACTGTTTTGTTACTTTTTCATAAAGTT-AG
85040194 TGAC
1 TGAC
85040198 AAAAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 5 0.16
30 12 0.39
31 14 0.45
ACGTcount: A:0.22, C:0.08, G:0.18, T:0.52
Consensus pattern (31 bp):
TGACTGTTTTGTTACTTTTTCATAAAGTTAG
Found at i:85045688 original size:30 final size:30
Alignment explanation
Indices: 85045634--85045692 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
85045624 TTTACGAGCC
* *
85045634 TAGGGGCCAAAGTGCAAATATGTAAAAGTT
1 TAGGGGCCAAAATGAAAATATGTAAAAGTT
* *
85045664 TAGGGGTCAAAATGAAAATTTGTAAAAGT
1 TAGGGGCCAAAATGAAAATATGTAAAAGT
85045693 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.25
Consensus pattern (30 bp):
TAGGGGCCAAAATGAAAATATGTAAAAGTT
Found at i:85045949 original size:18 final size:20
Alignment explanation
Indices: 85045913--85045959 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
85045903 ATTTGTAAGT
85045913 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
85045933 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
85045952 ATGATATA
1 AT-ATATA
85045960 ACATGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:85046430 original size:50 final size:50
Alignment explanation
Indices: 85046311--85046694 Score: 317
Period size: 50 Copynumber: 7.6 Consensus size: 50
85046301 GTTGTGAGAA
* * *** *
85046311 CACATGTGTAGTACTATGTGCAGACTACTATGTGTTTAAGATAGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT--TGTTAGGT
*
85046363 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * * * *
85046413 CGCATGTGTAATACTAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* * * *
85046464 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
85046514 CAC-TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA-GATTGTTAGGT
* * * * * * *
85046563 CGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT--GTTAGGT
* * * * ** ** * * *
85046614 CACGTGTATTGTACTAAGTGTAGGCTACTACATGTATTAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
85046664 CACGTATGTAGTACTAAGTGCA-GCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
85046695 CATACCAAAG
Statistics
Matches: 263, Mismatches: 62, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
48 2 0.01
49 52 0.20
50 101 0.38
51 71 0.27
52 37 0.14
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:85046499 original size:101 final size:100
Alignment explanation
Indices: 85046362--85046542 Score: 299
Period size: 101 Copynumber: 1.8 Consensus size: 100
85046352 TAGTTTTAGG
* * *
85046362 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCAC-TGTGTAATAC
85046427 TAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
65 TAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
* *
85046463 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACTGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACTGTGTAATACT
*
85046528 AAGTGCAGGCTACTA
66 AAGTGCAAGCTACTA
85046543 CGTGTACAGG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
100 24 0.32
101 50 0.68
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACTGTGTAATACT
AAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
Found at i:85046590 original size:150 final size:151
Alignment explanation
Indices: 85046315--85046692 Score: 510
Period size: 150 Copynumber: 2.5 Consensus size: 151
85046305 TGAGAACACA
* * * * *
85046315 TGTGTAGTACTATGTGCAGACTACTATGTGTTTAAGATAGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAT-G-GTTAGGTCACGTGTGTAGTACTAA
* *
85046380 GTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAATACTAAGTGCAAGCTACTATG
64 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTACTATG
**
85046445 CGTACCCGATAGTTTCGATCACG
129 CGTACCCGATAACTTCGATCACG
*
85046468 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC-TGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * *
85046532 GCAGGCTACTACGTGTA-CAGGATTGATAGGTCGCATGTGTAGTATTAAGTGCAGGCTACTATGC
66 GCAGGCTACTACGTGTACCA-GATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTACTATGC
*
85046596 GTACCCGTTAACTTCGATCACG
130 GTACCCGATAACTTCGATCACG
* * * * * * * *
85046618 TGTATTGTACTAAGTGTAGGCTACTACATGTATTAGATGGATAAGTCACGTATGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACTAAGT
85046683 GCA-GCTACTA
66 GCAGGCTACTA
85046693 TGCATACCAA
Statistics
Matches: 201, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
149 2 0.01
150 139 0.69
151 26 0.13
152 1 0.00
153 33 0.16
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTACTATGCG
TACCCGATAACTTCGATCACG
Found at i:85046924 original size:16 final size:16
Alignment explanation
Indices: 85046903--85046934 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
85046893 AGAATGGAGT
85046903 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
85046919 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
85046935 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:85047595 original size:179 final size:180
Alignment explanation
Indices: 85047257--85047595 Score: 511
Period size: 179 Copynumber: 1.9 Consensus size: 180
85047247 CATCCGAGAG
* * *
85047257 CTGTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGAAACTGTCAAATAGTGAAATAGGGG
1 CTGTACCATGAAATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGG
* * * *
85047322 TATCTTTAATGAATAAAATCTACTAATTGGCTAAACTAAAAATTTTGAAAATTTTATGGTAAAAA
66 TATATTTAATGAATAAAATATACTAATTGGATAAACTAAAAATTCTGAAAATTTTATGGTAAAAA
* * *
85047387 TATATGTGAGTCCAGTTTCTGGGAAAATTAGTGATTCTCAATTTAGAGTC
131 GATATATGAGTCCAGTTTCTGGAAAAATTAGTGATTCTCAATTTAGAGTC
* * *
85047437 CTGTACCATGAAATAAATAATTTTTAATGAAGAGAGG-CGGAACTATTAGATAGTGAAATAGGGG
1 CTGTACCATGAAATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGG
* *
85047501 TATATTTAATGAATAAACTATACTAATTGGATAAACTAAAAATTCTGAAAATTTTATGGTAAGAA
66 TATATTTAATGAATAAAATATACTAATTGGATAAACTAAAAATTCTGAAAATTTTATGGTAAAAA
*
85047566 GATATATGAGTCTAGTTT-TAGGAAAAATTA
131 GATATATGAGTCCAGTTTCT-GGAAAAATTA
85047596 ACAAATCTTA
Statistics
Matches: 142, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
178 1 0.01
179 106 0.75
180 35 0.25
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.33
Consensus pattern (180 bp):
CTGTACCATGAAATAAATAATTTTTAATGAAGAGAGGTCGAAACTATCAAATAGTGAAATAGGGG
TATATTTAATGAATAAAATATACTAATTGGATAAACTAAAAATTCTGAAAATTTTATGGTAAAAA
GATATATGAGTCCAGTTTCTGGAAAAATTAGTGATTCTCAATTTAGAGTC
Found at i:85049691 original size:40 final size:40
Alignment explanation
Indices: 85049583--85049792 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
85049573 CGGGATTTAA
* * * * *
85049583 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
85049623 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85049663 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85049703 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85049743 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85049783 CCGGATATAT
1 CCGGATATAT
85049793 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:85057825 original size:40 final size:40
Alignment explanation
Indices: 85057717--85057926 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
85057707 CGGGATTTAA
* * * * *
85057717 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
85057757 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85057797 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85057837 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85057877 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
85057917 CCGGATATAT
1 CCGGATATAT
85057927 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:85062117 original size:40 final size:40
Alignment explanation
Indices: 85062068--85062256 Score: 201
Period size: 39 Copynumber: 4.8 Consensus size: 40
85062058 CAGAATTTAA
* *
85062068 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGTACAAATGCCTTCGGGACATAAC
* *
85062108 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACATAAC
* *
85062148 CCGGATTTAGTAACTC--ACACAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGTACA-AATGCCTTCGGGACATAAC
* * * *
85062187 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACATAAC
* *
85062225 CC-GAAATTAGTAACTCGCACAAATGCCTTCGG
1 CCGGATA-TAGTAACTCGTACAAATGCCTTCGG
85062257 ATCTTAGTCC
Statistics
Matches: 134, Mismatches: 9, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
37 2 0.01
38 23 0.17
39 59 0.44
40 48 0.36
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGTACAAATGCCTTCGGGACATAAC
Found at i:85062190 original size:79 final size:80
Alignment explanation
Indices: 85062087--85062309 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
85062077 GCTACTCGTT
* * *
85062087 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
85062151 GATTTAGTAACTCACA
65 GAATTAGTAACTCACA
* *
85062167 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGCCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
85062229 AATTAGTAACTCGCA
66 AATTAGTAACTCACA
* * *
85062244 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
85062307 GGA
64 GGA
85062310 CATCATTCGA
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
77 25 0.20
78 38 0.30
79 47 0.38
80 15 0.12
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCACA
Found at i:85062275 original size:40 final size:40
Alignment explanation
Indices: 85062087--85062309 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
85062077 GCTACTCGTT
* *
85062087 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
85062127 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
85062167 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
85062206 C-AATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
85062244 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
85062285 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85062310 CATCATTCGA
Statistics
Matches: 163, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 59 0.36
40 66 0.40
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:85066923 original size:21 final size:21
Alignment explanation
Indices: 85066897--85066937 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
85066887 ATCAAGTACA
85066897 TACGCAAGGTATGCTTCGCAT
1 TACGCAAGGTATGCTTCGCAT
85066918 TACGCAAGGTATGCTTCGCA
1 TACGCAAGGTATGCTTCGCA
85066938 CCCTTTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (21 bp):
TACGCAAGGTATGCTTCGCAT
Found at i:85070345 original size:40 final size:40
Alignment explanation
Indices: 85070158--85070379 Score: 305
Period size: 39 Copynumber: 5.7 Consensus size: 40
85070148 GCTACTCGTT
*
85070158 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
85070198 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
85070237 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
85070276 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
85070314 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
85070355 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85070380 CATCATTCGA
Statistics
Matches: 166, Mismatches: 9, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
38 35 0.21
39 74 0.45
40 46 0.28
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:85072606 original size:28 final size:28
Alignment explanation
Indices: 85072575--85072737 Score: 113
Period size: 28 Copynumber: 5.8 Consensus size: 28
85072565 GAGTTCGCAT
85072575 GGACTATCTTTCAAGCAAGAGTCAGTAA
1 GGACTATCTTTCAAGCAAGAGTCAGTAA
* *
85072603 GGACTAT-TCTTCAAGAAAGAGTGCACATAA
1 GGACTATCT-TTCAAGCAAGAGT-CA-GTAA
* *
85072633 --ACTATCTTTCAAGAAAGAGTCCA-TAT
1 GGACTATCTTTCAAGCAAGAGT-CAGTAA
* **
85072659 GGACTATATTTCAAGCAAGAGTTTGTAA
1 GGACTATCTTTCAAGCAAGAGTCAGTAA
* * * * * *
85072687 TGATTATTCTTT-AAGCAGGAGTCTGCAG
1 GGACTA-TCTTTCAAGCAAGAGTCAGTAA
85072715 GGACTAT-TCTTCAAGCAAGAGTC
1 GGACTATCT-TTCAAGCAAGAGTC
85072738 CACAAGAACT
Statistics
Matches: 106, Mismatches: 19, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
26 3 0.03
27 4 0.04
28 89 0.84
29 7 0.07
30 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (28 bp):
GGACTATCTTTCAAGCAAGAGTCAGTAA
Found at i:85078207 original size:27 final size:27
Alignment explanation
Indices: 85078176--85078245 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
85078166 TCAGTAGTAG
*
85078176 AGGAGTCCACAGGACATTCCACAATAT
1 AGGAGTCCGCAGGACATTCCACAATAT
* * * * *
85078203 CGGAGTTCGTAGGACATTCCGCAGTAT
1 AGGAGTCCGCAGGACATTCCACAATAT
85078230 AGGAGTCCGCAGGACA
1 AGGAGTCCGCAGGACA
85078246 GTCTATTGTT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.27, T:0.19
Consensus pattern (27 bp):
AGGAGTCCGCAGGACATTCCACAATAT
Found at i:85079715 original size:44 final size:46
Alignment explanation
Indices: 85079655--85079836 Score: 165
Period size: 48 Copynumber: 3.9 Consensus size: 46
85079645 TGACATTTGG
* *
85079655 GTGACATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGG-G
1 GTGATATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGTA
*
85079700 GTGAT-TGTGGGCCAGTGT-AGAACCATGTTGGACATGGCATCGGTA
1 GTGATATGTGAGCCAGTGTAAG-ACCATGTTGGACATGGCATCGGTA
* * * * *
85079745 GTGATATGTGTGCTAGTGTAAGACTATGTCTGGGACATGGCATTGGCCA
1 GTGATATGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGG-TA
** * * *
85079794 -CAACATGAGAGCCAGTGTAAGACAATGTTTGAGACATGGCATC
1 GTGATATGTGAGCCAGTGTAAGACCATG-TTG-GACATGGCATC
85079837 AGCAATTCAC
Statistics
Matches: 112, Mismatches: 16, Indels: 15
0.78 0.11 0.10
Matches are distributed among these distances:
43 2 0.02
44 34 0.30
45 9 0.08
46 17 0.15
47 4 0.04
48 44 0.39
49 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.25
Consensus pattern (46 bp):
GTGATATGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGTA
Done.