Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 285 of 328
Found at i:85360879 original size:14 final size:14
Alignment explanation
Indices: 85360860--85360894 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
85360850 GAATTGATTT
*
85360860 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
*
85360874 TTGAAAAACAGAAT
1 TTGAAAAACAGAAA
85360888 TTGAAAA
1 TTGAAAA
85360895 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:85360967 original size:89 final size:89
Alignment explanation
Indices: 85360802--85361055 Score: 317
Period size: 89 Copynumber: 2.9 Consensus size: 89
85360792 ACATAAATTA
* *
85360802 AAAATACCTCGGCATGTGACCC-GAGGCTCAACTCACCTCT-AGCAATATGAATTGA--TTTTTG
1 AAAATACCTCAGCA--TG-CCCTGAGGCTCAACTCACCTCTCA-CAATATGAGTTGATTTTTTTG
*
85360863 AAAAACATAAATTGAAAAACAGA-ATTTG
62 AAAAACAAAAATTGAAAAACAGACA-TTG
* *
85360891 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAA
1 AAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAA
*
85360956 GA-AAAAATTGAAAAGCAGACATTG
66 -ACAAAAATTGAAAAACAGACATTG
* *
85360980 AAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAA
1 AAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAA
*
85361043 ACAGAAATTGAAA
66 ACAAAAATTGAAA
85361056 TTACCTCAGT
Statistics
Matches: 147, Mismatches: 11, Indels: 16
0.84 0.06 0.09
Matches are distributed among these distances:
86 3 0.02
87 51 0.35
88 1 0.01
89 90 0.61
90 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (89 bp):
AAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAA
ACAAAAATTGAAAAACAGACATTG
Found at i:85361096 original size:73 final size:73
Alignment explanation
Indices: 85360963--85361274 Score: 403
Period size: 76 Copynumber: 4.2 Consensus size: 73
85360953 AAAGAAAAAA
* *
85360963 TTGAAAAGCAGACATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
85361028 GTTGA-TTT
65 GTTGATTTT
* ** * *
85361036 TTGACAAACAGAAATTGAAATTACCTCAGTGTGTCCTAAGGCTCAACTCACCTCTTGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
85361101 GTTGATTTTT
65 GTTGA-TTTT
* * *
85361111 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCATCTCTCGCAACATG
1 TTGAAA-ACAGAAATTGAAAA-TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
85361176 AGTTGATTTTTT
64 AGTTGA--TTTT
* * * * *
85361188 TTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
85361253 GTTGA-TTT
65 GTTGATTTT
85361261 TTGAAAACAGAAAT
1 TTGAAAACAGAAAT
85361275 AAAAACATCA
Statistics
Matches: 211, Mismatches: 22, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
72 7 0.03
73 68 0.32
74 5 0.02
75 20 0.09
76 86 0.41
77 25 0.12
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:85362117 original size:43 final size:45
Alignment explanation
Indices: 85362069--85362153 Score: 113
Period size: 43 Copynumber: 1.9 Consensus size: 45
85362059 TTTTGTGTTA
*
85362069 ATCAAGACA-CCATTTTCAGGTTTTCACCTTGA-T-CCTTTTTATT
1 ATCAAGA-AGCCATTTTCAGGTTTTCAACTTGATTCCCTTTTTATT
* *
85362112 ATCAAGAAGCCCTTTTCGGGTTTTCAACTTGATTCCCTTTTT
1 ATCAAGAAGCCATTTTCAGGTTTTCAACTTGATTCCCTTTTT
85362154 TTTAGGCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 27 0.75
44 1 0.03
45 7 0.19
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.44
Consensus pattern (45 bp):
ATCAAGAAGCCATTTTCAGGTTTTCAACTTGATTCCCTTTTTATT
Found at i:85368504 original size:64 final size:64
Alignment explanation
Indices: 85368431--85368641 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
85368421 CTGGGCCAGA
*
85368431 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
85368495 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
85368557 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
85368568 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
85368632 GCCCATTTCA
1 GCCCATTTCA
85368642 AAATACATAC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:85368643 original size:137 final size:137
Alignment explanation
Indices: 85368397--85368683 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
85368387 TATTGGGCCT
**
85368397 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
85368462 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
85368527 CATATGC
131 CATATGC
85368534 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85368599 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
85368664 CATATGC
131 CATATGC
85368671 AAGCCCATTTGGG
1 AAGCCCATTTGGG
85368684 GAGACTACTC
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
CATATGC
Found at i:85368960 original size:26 final size:26
Alignment explanation
Indices: 85368931--85368983 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
85368921 TCAAACATGC
85368931 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
85368957 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
85368983 A
1 A
85368984 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:85370570 original size:26 final size:26
Alignment explanation
Indices: 85370468--85370569 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
85370458 CATGAAATTC
85370468 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
85370494 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
85370520 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
85370546 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
85370570 TTTTCAATTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:85374445 original size:19 final size:19
Alignment explanation
Indices: 85374384--85374446 Score: 67
Period size: 21 Copynumber: 3.2 Consensus size: 19
85374374 CAAATAAAAC
85374384 ATAATAA-TATTAA-AATAA
1 ATAATAAGTA-TAATAATAA
85374402 AGTAATAAGTGATAATAATGAAA
1 A-TAATAAGT-ATAATAAT--AA
85374425 ATAATAAGTATAATAATAA
1 ATAATAAGTATAATAATAA
85374444 ATA
1 ATA
85374447 TAACACTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
18 1 0.03
19 11 0.28
20 4 0.10
21 12 0.31
22 8 0.21
23 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (19 bp):
ATAATAAGTATAATAATAA
Found at i:85374602 original size:3 final size:3
Alignment explanation
Indices: 85374596--85374656 Score: 99
Period size: 3 Copynumber: 21.0 Consensus size: 3
85374586 ATAGCTAAAT
85374596 ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
85374643 AT- ATA AAA ATA ATA
1 ATA ATA ATA ATA ATA
85374657 GTGATAACAA
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 4 0.07
3 50 0.93
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:85374619 original size:23 final size:23
Alignment explanation
Indices: 85374593--85374656 Score: 103
Period size: 23 Copynumber: 2.8 Consensus size: 23
85374583 AATATAGCTA
85374593 AATATAATAATAATAATAATAAT
1 AATATAATAATAATAATAATAAT
85374616 AATATAATAATAATAATAATAAT
1 AATATAATAATAATAATAATAAT
*
85374639 AATA-ATATAAAAATAATA
1 AATATA-ATAATAATAATA
85374657 GTGATAACAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
22 1 0.03
23 38 0.97
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATATAATAATAATAATAATAAT
Found at i:85374632 original size:26 final size:26
Alignment explanation
Indices: 85374596--85374656 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
85374586 ATAGCTAAAT
85374596 ATAATAATAATAATAATAATAATATA
1 ATAATAATAATAATAATAATAATATA
85374622 ATAATAATAATAATAATAATAATATA
1 ATAATAATAATAATAATAATAATATA
*
85374648 AAAATAATA
1 ATAATAATA
85374657 GTGATAACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (26 bp):
ATAATAATAATAATAATAATAATATA
Found at i:85385727 original size:22 final size:24
Alignment explanation
Indices: 85385687--85385745 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
85385677 GTTTAATTAA
* *
85385687 GGTTTATTAAATCAGGGTT-TA-T
1 GGTTTATTAAATTACGGTTATAGT
85385709 GGTTTATTAAATTACGGTTATAGT
1 GGTTTATTAAATTACGGTTATAGT
* *
85385733 GTTTTATTTAATT
1 GGTTTATTAAATT
85385746 TTTAAGTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 17 0.55
23 2 0.06
24 12 0.39
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.51
Consensus pattern (24 bp):
GGTTTATTAAATTACGGTTATAGT
Found at i:85385824 original size:21 final size:20
Alignment explanation
Indices: 85385796--85385850 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 20
85385786 AATAATTTTA
85385796 TTATTAGGGTTTTGGGTGTG
1 TTATTAGGGTTTTGGGTGTG
* *
85385816 TTAATTAGGGTTTTTGGTTTG
1 TT-ATTAGGGTTTTGGGTGTG
85385837 TT-TTAGGGTTTTGG
1 TTATTAGGGTTTTGG
85385851 ATTTTATTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.35
20 2 0.06
21 18 0.58
ACGTcount: A:0.11, C:0.00, G:0.35, T:0.55
Consensus pattern (20 bp):
TTATTAGGGTTTTGGGTGTG
Found at i:85385865 original size:21 final size:21
Alignment explanation
Indices: 85385790--85385869 Score: 71
Period size: 21 Copynumber: 3.9 Consensus size: 21
85385780 AAGAAAAATA
85385790 ATTTTATTATTAGGGTTTTGG
1 ATTTTATTATTAGGGTTTTGG
*
85385811 GTGTGTTA--ATTAGGGTTTTTGG
1 AT-T-TTATTATTAGGG-TTTTGG
*
85385833 --TTTGTT-TTAGGGTTTTGG
1 ATTTTATTATTAGGGTTTTGG
*
85385851 ATTTTATTGTTAGGGTTTT
1 ATTTTATTATTAGGGTTTT
85385870 TAGTGTTTAG
Statistics
Matches: 48, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
18 8 0.17
19 7 0.15
20 5 0.10
21 18 0.38
22 7 0.15
23 3 0.06
ACGTcount: A:0.14, C:0.00, G:0.29, T:0.57
Consensus pattern (21 bp):
ATTTTATTATTAGGGTTTTGG
Found at i:85399174 original size:40 final size:40
Alignment explanation
Indices: 85399107--85399283 Score: 277
Period size: 40 Copynumber: 4.5 Consensus size: 40
85399097 ACCCAAGTAT
* *
85399107 CTTCGGGAT-TTAG-CCGGATATAACAACTCACACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
85399146 CTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
85399186 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
85399226 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGT
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
85399266 CTTCGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
85399284 TTATCATCCG
Statistics
Matches: 127, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 116 0.91
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:85402039 original size:17 final size:18
Alignment explanation
Indices: 85402013--85402046 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
85402003 TAATTTTGCA
85402013 TAAATATGAATTATAGAT
1 TAAATATGAATTATAGAT
*
85402031 TAAAT-TGAATTCTAGA
1 TAAATATGAATTATAGA
85402047 AGTACTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (18 bp):
TAAATATGAATTATAGAT
Found at i:85405673 original size:35 final size:34
Alignment explanation
Indices: 85405605--85405673 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 34
85405595 GTAAGTAATT
*
85405605 TATCCTCTTTCCTATTTGACAATACATGTTTTTA
1 TATCCTCTTTCCTATTTGACAATACATGGTTTTA
* **
85405639 TATCCTCTTTTCTTATTTGACAATTTATGGTTTTA
1 TATCCTC-TTTCCTATTTGACAATACATGGTTTTA
85405674 ATTTGATACG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 7 0.23
35 23 0.77
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.54
Consensus pattern (34 bp):
TATCCTCTTTCCTATTTGACAATACATGGTTTTA
Found at i:85421672 original size:44 final size:44
Alignment explanation
Indices: 85421640--85421764 Score: 134
Period size: 44 Copynumber: 2.9 Consensus size: 44
85421630 GCTATTATTA
*
85421640 TTATGTTTCTACTATTATTAT-TTATCTAATTATTATTTATCTAT
1 TTATATTTCTACTATTATTATATT-TCTAATTATTATTTATCTAT
*
85421684 TTATATTTCTACTATTATTATATTTCTATTTATTATATT-TCTATT
1 TTATATTTCTACTATTATTATATTTCTAATTATTAT-TTATCTA-T
* * *
85421729 TCTATTTTTATACTAATATTAT-TTTC--ATTATTATTT
1 T-TATATTTCTACTATTATTATATTTCTAATTATTATTT
85421765 TTCTTATATA
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
42 2 0.03
43 7 0.10
44 35 0.49
45 10 0.14
46 17 0.24
ACGTcount: A:0.27, C:0.09, G:0.01, T:0.63
Consensus pattern (44 bp):
TTATATTTCTACTATTATTATATTTCTAATTATTATTTATCTAT
Found at i:85421673 original size:15 final size:14
Alignment explanation
Indices: 85421636--85421765 Score: 74
Period size: 15 Copynumber: 8.8 Consensus size: 14
85421626 TATTGCTATT
85421636 ATTATTATGTTTCTA
1 ATTATTAT-TTTCTA
85421651 CTATTATTATTTATCTA
1 --ATTATTATTT-TCTA
85421668 ATTATTATTTATCTA
1 ATTATTATTT-TCTA
*
85421683 TTTA-TA-TTTCTA
1 ATTATTATTTTCTA
85421695 CTATTATTATATTTCTA
1 --ATTATTAT-TTTCTA
*
85421712 TTTATTATATTTCTA
1 ATTATTAT-TTTCTA
*
85421727 TTTCTATT-TTTATACTA
1 -AT-TATTATTT-T-CTA
85421744 A-TATTATTTTC--
1 ATTATTATTTTCTA
85421755 ATTATTATTTT
1 ATTATTATTTT
85421766 TCTTATATAT
Statistics
Matches: 97, Mismatches: 4, Indels: 29
0.75 0.03 0.22
Matches are distributed among these distances:
11 1 0.01
12 13 0.13
13 3 0.03
14 10 0.10
15 39 0.40
16 6 0.06
17 25 0.26
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.63
Consensus pattern (14 bp):
ATTATTATTTTCTA
Found at i:85421683 original size:29 final size:27
Alignment explanation
Indices: 85421651--85421764 Score: 83
Period size: 29 Copynumber: 3.9 Consensus size: 27
85421641 TATGTTTCTA
85421651 CTATTATTATTTATCTAATTATTATTTAT
1 CTATTATTATTT-TCT-ATTATTATTTAT
85421680 CTATT-TATATTTCTACTATTATTATATT-T
1 CTATTAT-TATTT-T-CTATTATTAT-TTAT
85421709 CTATTTATTATATTTCTATT-TCTATTTTTAT
1 CTA-TTATTAT-TTTCTATTAT-TA--TTTAT
*
85421740 ACTAATATTATTTTC-ATTATTATTT
1 -CTATTATTATTTTCTATTATTATTT
85421765 TTCTTATATA
Statistics
Matches: 71, Mismatches: 2, Indels: 26
0.72 0.02 0.26
Matches are distributed among these distances:
27 3 0.04
28 2 0.03
29 35 0.49
30 17 0.24
31 11 0.15
32 3 0.04
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (27 bp):
CTATTATTATTTTCTATTATTATTTAT
Found at i:85421921 original size:27 final size:25
Alignment explanation
Indices: 85421866--85421956 Score: 76
Period size: 25 Copynumber: 3.6 Consensus size: 25
85421856 TCATCTCAAA
* * *
85421866 TTTTTATACATTATTTACTTT-AAT
1 TTTTTATATATTATATATTTTAAAT
* *
85421890 ATTTTCATATATTATGTATTTTAAACTT
1 -TTTTTATATATTATATATTTTAAA--T
* *
85421918 TTTTTACATATTATATATTTTGAAT
1 TTTTTATATATTATATATTTTAAAT
*
85421943 TGTTTATATATTAT
1 TTTTTATATATTAT
85421957 TTTTAAAGAG
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
25 30 0.57
26 2 0.04
27 20 0.38
28 1 0.02
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.60
Consensus pattern (25 bp):
TTTTTATATATTATATATTTTAAAT
Found at i:85421954 original size:25 final size:26
Alignment explanation
Indices: 85421896--85421956 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
85421886 TAATATTTTC
* *
85421896 ATATATTATGTATTTTAAACTTTTTTT
1 ATATATTATATATTTTAAAC-TTGTTT
* *
85421923 ACATATTATATATTTTGAA-TTGTTT
1 ATATATTATATATTTTAAACTTGTTT
85421948 ATATATTAT
1 ATATATTAT
85421957 TTTTAAAGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 13 0.45
27 16 0.55
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (26 bp):
ATATATTATATATTTTAAACTTGTTT
Found at i:85422119 original size:25 final size:25
Alignment explanation
Indices: 85422085--85422134 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
85422075 ATTTGCTTAG
85422085 AATTGTTTTATATTTTATTTTAGAT
1 AATTGTTTTATATTTTATTTTAGAT
85422110 AATTGTTTTATATTTTATTTTAGAT
1 AATTGTTTTATATTTTATTTTAGAT
85422135 TTTCTTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (25 bp):
AATTGTTTTATATTTTATTTTAGAT
Found at i:85422136 original size:12 final size:12
Alignment explanation
Indices: 85422090--85422137 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
85422080 CTTAGAATTG
*
85422090 TTTTATATTTTA
1 TTTTAGATTTTA
* *
85422102 TTTTAGATAATTG
1 TTTTAGAT-TTTA
*
85422115 TTTTATATTTTA
1 TTTTAGATTTTA
85422127 TTTTAGATTTT
1 TTTTAGATTTT
85422138 CTTACTTTGT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (12 bp):
TTTTAGATTTTA
Found at i:85428822 original size:13 final size:13
Alignment explanation
Indices: 85428804--85428841 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
85428794 GCTGTAACAC
85428804 GACCGTGTGATAT
1 GACCGTGTGATAT
85428817 GACCGTGTGATAT
1 GACCGTGTGATAT
85428830 GACCGTGTGATA
1 GACCGTGTGATA
85428842 ATAGAACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.29
Consensus pattern (13 bp):
GACCGTGTGATAT
Found at i:85435622 original size:43 final size:42
Alignment explanation
Indices: 85435535--85435625 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
85435525 TCCATGCTGT
* * * *
85435535 CAAACAGTTCTATTCCAGCCCAGAATACCATATCTCTGTAGC
1 CAAACAGTCCTATTCCAGCCCAGAATACCAAAACTCTGCAGC
* *
85435577 CAAACAGTCCTATTCCAGCCTTAGAATCCCCAAAAC-CTGCAGC
1 CAAACAGTCCTATTCCAGCC-CAGAAT-ACCAAAACTCTGCAGC
85435620 CAAACA
1 CAAACA
85435626 CCCCTTTTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 19 0.46
43 17 0.41
44 5 0.12
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.21
Consensus pattern (42 bp):
CAAACAGTCCTATTCCAGCCCAGAATACCAAAACTCTGCAGC
Found at i:85436520 original size:118 final size:118
Alignment explanation
Indices: 85436294--85436506 Score: 390
Period size: 118 Copynumber: 1.8 Consensus size: 118
85436284 TGTTTTCCAT
* *
85436294 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
85436359 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
**
85436412 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
85436477 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
85436507 TTGGGTAAAA
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
118 91 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
Found at i:85446287 original size:46 final size:45
Alignment explanation
Indices: 85446217--85446346 Score: 170
Period size: 46 Copynumber: 2.8 Consensus size: 45
85446207 GAAATTACAG
* *
85446217 ATCCTATACTCCTGAGATGTAGTGGGATGCATTAAAGAAAATGAAA
1 ATCCTATAC-CCTGAGATGCAGTGGGATGGATTAAAGAAAATGAAA
* * *
85446263 ATCCTATACCCTTGAGATGCAGTGGGATGGATTGAAGAAAATGCAG
1 ATCCTATACCC-TGAGATGCAGTGGGATGGATTAAAGAAAATGAAA
* *
85446309 ATCTTATACCCCTGAGACGCAGTGGGATGGATTAAAGA
1 ATCCTATA-CCCTGAGATGCAGTGGGATGGATTAAAGA
85446347 GGATTATAGA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 2 0.03
46 69 0.93
47 3 0.04
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (45 bp):
ATCCTATACCCTGAGATGCAGTGGGATGGATTAAAGAAAATGAAA
Found at i:85446566 original size:132 final size:131
Alignment explanation
Indices: 85446348--85446805 Score: 582
Period size: 132 Copynumber: 3.5 Consensus size: 131
85446338 GATTAAAGAG
* * * *
85446348 GATTATAGATCTTATCTCCCTAAGCAGTACTAGAGCAGATCGAAGACGGTGAATCTTATCTTCCC
1 GATTATAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCT
* * *
85446413 AAGGTAGTAGGGAAGCTGATTTAAGCCACTAGCCTTATCTCTCTGAGCAGTAGTGGAGCAAGCTG
66 GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTC-CTGAGCAGCAGTGGAGCAAGCTG
85446478 AA
130 AA
* * **
85446480 GATTACAGATCTTATCTCTCTAAGAAGTAGTAGAGCAGATCGAAGACGATGAATCTTATCTTCCT
1 GATTATAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCT
* *
85446545 GAGGTAGTAGGGAAGCAGATTTAAGCTACTAGCCTTATCTGCCTGAGCAGCAGTGGAGCAGGCTG
66 GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCT-CCTGAGCAGCAGTGGAGCAAGCTG
85446610 AA
130 AA
* * * * * *
85446612 GATTGTAGATTTTATCTCCCTAAGCAA-TAGTGGAACAGATCGAGGACGGCGAATCTTATCTT-T
1 GATTATAGATCTTATCTCCCTAAG-AAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCC
*
85446675 TCGAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCCTGAGTAGCAGTGGAG-AAGG
65 T-GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCT-CCTGAGCAGCAGTGGAGCAA-G
*
85446739 TTGAA
127 CTGAA
* * * * *
85446744 GATTGTAGATCTTATCTTCCTAAAAAAGTAGT-GAAGTAGATCAAAGACGGCGAATCTTATCT
1 GATTATAGATCTTATCTCCCT-AAGAAGTAGTAG-AGCAGATCGAAGACGGCGAATCTTATCT
85446806 CCATGAAGCA
Statistics
Matches: 286, Mismatches: 33, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
131 2 0.01
132 251 0.88
133 33 0.12
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (131 bp):
GATTATAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCT
GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCTGAGCAGCAGTGGAGCAAGCTGA
A
Found at i:85446968 original size:89 final size:89
Alignment explanation
Indices: 85446781--85446960 Score: 218
Period size: 89 Copynumber: 2.0 Consensus size: 89
85446771 GTAGTGAAGT
* *
85446781 AGATCAAAGACGGCGAATCTTATCTCCATGAAGCAGCAATGAAACAGATTTAGGCCACCAGCCTC
1 AGATCGAAGACGGCGAATCTTATCTCCATGAAGCAGCAATGAAACAGATTTAAGCCACCAGCCTC
** *
85446846 ATCTCCCTAAAGTAGCAGTGGGGC
66 ATCTCCCTAAAGTAGCAAAGGAGC
* * * * *
85446870 AGATCGAAGACGGTGAATCTTATTTTCATGTAGC-GACAATGAAGCAGATTTAAGCCACCAGCCT
1 AGATCGAAGACGGCGAATCTTATCTCCATGAAGCAG-CAATGAAACAGATTTAAGCCACCAGCCT
* * * *
85446934 TATCTCCTTGAGGTAGCAAAGGAGC
65 CATCTCCCTAAAGTAGCAAAGGAGC
85446959 AG
1 AG
85446961 GCTGAAGATA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
88 1 0.01
89 75 0.99
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (89 bp):
AGATCGAAGACGGCGAATCTTATCTCCATGAAGCAGCAATGAAACAGATTTAAGCCACCAGCCTC
ATCTCCCTAAAGTAGCAAAGGAGC
Found at i:85447079 original size:24 final size:24
Alignment explanation
Indices: 85447007--85447081 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
85446997 GTGGAGTAGA
85447007 CTGAAGATAGCAGATCTTATCTCC
1 CTGAAGATAGCAGATCTTATCTCC
* ** * ***
85447031 CTGAAG-TTGCAG-T-GGAGCAGA
1 CTGAAGATAGCAGATCTTATCTCC
85447052 CTGAAGATAGCAGATCTTATCTCC
1 CTGAAGATAGCAGATCTTATCTCC
85447076 CTGAAG
1 CTGAAG
85447082 TTGTAGTGGA
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
21 8 0.24
22 6 0.18
23 6 0.18
24 14 0.41
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.25
Consensus pattern (24 bp):
CTGAAGATAGCAGATCTTATCTCC
Found at i:85447180 original size:179 final size:179
Alignment explanation
Indices: 85446977--85447319 Score: 526
Period size: 179 Copynumber: 1.9 Consensus size: 179
85446967 GATAGTAGGT
* *
85446977 CTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAGATCTTATCTCCATGAAGTTGCA
* * * ** *
85447042 GTGGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGTAGTGGAATA-TTTCGAAGATA
66 GTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAATAGATT-GAAGATA
* *
85447106 ACAAACCTCATCTCTCTAAAGTTGTAGTAGAGCAGGTTGAAGTAGCAAGC
130 ACAAACCTCATCTATCTAAAGTTGCAGTAGAGCAGGTTGAAGTAGCAAGC
* * * *
85447156 CTTATCTCCTTGAAGTTGCAGTGGAGCAGGCTGAAGATAGCAGGTCTTATCTCCATGAAGTTGCA
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAGATCTTATCTCCATGAAGTTGCA
85447221 GTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAATAGATTGAAGATAA
66 GTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAATAGATTGAAGATAA
* *
85447286 CAAACCTCATCTATCTGAAGTTGCAGTGGAGCAG
131 CAAACCTCATCTATCTAAAGTTGCAGTAGAGCAG
85447320 ACTAAAAATA
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
179 145 0.99
180 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (179 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAGATCTTATCTCCATGAAGTTGCA
GTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAATAGATTGAAGATAA
CAAACCTCATCTATCTAAAGTTGCAGTAGAGCAGGTTGAAGTAGCAAGC
Found at i:85447349 original size:45 final size:45
Alignment explanation
Indices: 85446954--85447361 Score: 383
Period size: 45 Copynumber: 9.1 Consensus size: 45
85446944 AGGTAGCAAA
* * * *
85446954 GGAGCAGGCTGAAGATAGTAGGTCTTATCTCCCTGAAGTTACAGT
1 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
*
85446999 GGAGTAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
1 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
*
85447044 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGTAGT
1 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* * * * * * * * *
85447089 GGA--ATATTTCGAAGATAACAAACCTCATCTCTCTAAAGTTGTAGT
1 GGAGCAGA-CT-GAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* ** * *
85447134 AGAGCAGGTTGAAG-TAGCA-AGCCTTATCTCCTTGAAGTTGCAGT
1 GGAGCAGACTGAAGATAGCAGA-TCTTATCTCCCTGAAGTTGCAGT
* * *
85447178 GGAGCAGGCTGAAGATAGCAGGTCTTATCTCCATGAAGTTGCAGT
1 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* * * *
85447223 AGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGT
1 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
** * * * * * **
85447268 GGAATAGATTGAAGATAACAAACCTCATCTATCTGAAGTTGCAGT
1 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* * * * * *
85447313 GGAGCAGACTAAAAATAACAGGTTTTATCTCCCTGAAGTTGCAAT
1 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
85447358 GGAG
1 GGAG
85447362 TAGGTTGAAA
Statistics
Matches: 297, Mismatches: 59, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
43 3 0.01
44 35 0.12
45 256 0.86
46 2 0.01
47 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (45 bp):
GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
Found at i:85447369 original size:224 final size:224
Alignment explanation
Indices: 85446929--85447370 Score: 519
Period size: 224 Copynumber: 2.0 Consensus size: 224
85446919 TTAAGCCACC
* * *
85446929 AGCCTTATCTCCTTGAGGTAGCAAAGGAGCAGGCTGAAGATAGTAGGTCTTATCTCCCTGAAGTT
1 AGCCTTATCTCCTTGAAGTAGCAAAGGAGCAGGCTGAAGATAGCAGGTCTTATCTCCATGAAGTT
* * * * * *
85446994 ACAGTGGAGTAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA
66 ACAGTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAACAGACTGAAGA
* * * * * * * * * * *
85447059 TAGCAGATCTTATCTCCCTGAAGTTGTAGTGGAATATTTCGAAGATAACAAACCTCATCTCTCTA
131 TAACAAACCTCATCTACCTGAAGTTGCAGTGGAAGATCTCAAAAATAACAAACCTCATCTCCCTA
* *
85447124 AAGTTGTAGTAGAGCAGGTTGAAGTAGCA
196 AAGTTGCAATAGAGCAGGTTGAAGTAGCA
* **
85447153 AGCCTTATCTCCTTGAAGTTGCAGTGGAGCAGGCTGAAGATAGCAGGTCTTATCTCCATGAAGTT
1 AGCCTTATCTCCTTGAAGTAGCAAAGGAGCAGGCTGAAGATAGCAGGTCTTATCTCCATGAAGTT
* * *
85447218 GCAGTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAATAGATTGAAGA
66 ACAGTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAACAGACTGAAGA
* **** *
85447283 TAACAAACCTCATCTATCTGAAGTTGCAGTGGAGCAGA-CT-AAAAATAACAGGTTTTATCTCCC
131 TAACAAACCTCATCTACCTGAAGTTGCAGTGGA--AGATCTCAAAAATAACAAACCTCATCTCCC
* * *
85447346 TGAAGTTGCAATGGAGTAGGTTGAA
194 TAAAGTTGCAATAGAGCAGGTTGAA
85447371 ATTTAGGTTG
Statistics
Matches: 179, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
224 176 0.98
225 1 0.01
226 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (224 bp):
AGCCTTATCTCCTTGAAGTAGCAAAGGAGCAGGCTGAAGATAGCAGGTCTTATCTCCATGAAGTT
ACAGTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAACAGACTGAAGA
TAACAAACCTCATCTACCTGAAGTTGCAGTGGAAGATCTCAAAAATAACAAACCTCATCTCCCTA
AAGTTGCAATAGAGCAGGTTGAAGTAGCA
Found at i:85448399 original size:29 final size:29
Alignment explanation
Indices: 85448362--85448482 Score: 84
Period size: 29 Copynumber: 4.1 Consensus size: 29
85448352 ATATTATTGC
* *
85448362 TATTATTATTATGTTTCTATTTATATTTA
1 TATTGTTATTATATTTCTATTTATATTTA
* * * *
85448391 TTTTGTTATTCTAATACTA-TTATTATTTA
1 TATTGTTATTATATTTCTATTTA-TATTTA
* ** * *
85448420 TCTAATTTTTAT-TTATCTATTTATATTTC
1 TATTGTTATTATATT-TCTATTTATATTTA
* *
85448449 TACTGTTATTATATTTCTATATTATATTTC
1 TATTGTTATTATATTTCTAT-TTATATTTA
85448479 TATT
1 TATT
85448483 TCTATTTATA
Statistics
Matches: 67, Mismatches: 20, Indels: 9
0.70 0.21 0.09
Matches are distributed among these distances:
28 4 0.06
29 46 0.69
30 17 0.25
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.64
Consensus pattern (29 bp):
TATTGTTATTATATTTCTATTTATATTTA
Found at i:85448433 original size:15 final size:14
Alignment explanation
Indices: 85448377--85448447 Score: 56
Period size: 15 Copynumber: 4.9 Consensus size: 14
85448367 TTATTATGTT
*
85448377 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
85448391 T-T-TTGTTATTCTAA
1 TCTATTTTTATT-T-A
*
85448405 TACTATTATTATTTA
1 T-CTATTTTTATTTA
85448420 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
*
85448435 TCTATTTATATTT
1 TCTATTTTTATTT
85448448 CTACTGTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
12 6 0.13
13 2 0.04
14 14 0.30
15 15 0.33
16 2 0.04
17 7 0.15
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:85448473 original size:13 final size:13
Alignment explanation
Indices: 85448455--85448494 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
85448445 TTTCTACTGT
85448455 TATTATATTTCTA
1 TATTATATTTCTA
85448468 TATTATATTTCTA
1 TATTATATTTCTA
* *
85448481 T-TTCTATTTATA
1 TATTATATTTCTA
85448493 TA
1 TA
85448495 CTAATATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATATTTCTA
Found at i:85453144 original size:34 final size:34
Alignment explanation
Indices: 85453085--85453149 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
85453075 TTAATAAAAA
*
85453085 TATAATTTTTATAAATTTTTTAATAAATTTTGTT
1 TATAATTTTTATAAATTTTTAAATAAATTTTGTT
* *
85453119 TATAATTTTTAT-TATTTTTAAAATAATTTTT
1 TATAATTTTTATAAATTTTT-AAATAAATTTT
85453150 AAAATTTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 6 0.22
34 21 0.78
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (34 bp):
TATAATTTTTATAAATTTTTAAATAAATTTTGTT
Found at i:85454014 original size:22 final size:22
Alignment explanation
Indices: 85453996--85454106 Score: 116
Period size: 22 Copynumber: 5.1 Consensus size: 22
85453986 AGTAAAATAG
*
85453996 CACCAAAACAGCATCAAAACAA
1 CACCAAAACAGCACCAAAACAA
* *
85454018 CACCAAAATACCACCAAAACAA
1 CACCAAAACAGCACCAAAACAA
* * * * *
85454040 CACAAAAATACCATCAAAACAG
1 CACCAAAACAGCACCAAAACAA
*
85454062 CACCAAAACAGCACCCAAACAA
1 CACCAAAACAGCACCAAAACAA
* *
85454084 CAACAAAACAGCA-CAAAAAAA
1 CACCAAAACAGCACCAAAACAA
85454105 CA
1 CA
85454107 GCATCACCAA
Statistics
Matches: 74, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
21 8 0.11
22 66 0.89
ACGTcount: A:0.60, C:0.32, G:0.04, T:0.04
Consensus pattern (22 bp):
CACCAAAACAGCACCAAAACAA
Found at i:85454027 original size:33 final size:33
Alignment explanation
Indices: 85453989--85454127 Score: 129
Period size: 33 Copynumber: 4.1 Consensus size: 33
85453979 AAGTAGCAGT
*
85453989 AAAATAGCACCAAAACAGCATCAAAACAACACC
1 AAAACAGCACCAAAACAGCATCAAAACAACACC
* * * *
85454022 AAAATACCACCAAAACAACA-CAAAA-ATACCATC
1 AAAACAGCACCAAAACAGCATCAAAACA-A-CACC
* * *
85454055 AAAACAGCACCAAAACAGCACCCAAACAACAAC
1 AAAACAGCACCAAAACAGCATCAAAACAACACC
* *
85454088 AAAACAGCACAAAAAAACAGCATCACCAACAACACC
1 AAAACAGCAC--CAAAACAGCATCA-AAACAACACC
85454124 AAAA
1 AAAA
85454128 ACCTGCAAAA
Statistics
Matches: 86, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
31 1 0.01
32 6 0.07
33 51 0.59
34 5 0.06
35 11 0.13
36 12 0.14
ACGTcount: A:0.60, C:0.32, G:0.04, T:0.04
Consensus pattern (33 bp):
AAAACAGCACCAAAACAGCATCAAAACAACACC
Found at i:85454102 original size:11 final size:11
Alignment explanation
Indices: 85453989--85454101 Score: 102
Period size: 11 Copynumber: 10.4 Consensus size: 11
85453979 AAGTAGCAGT
*
85453989 AAAATAGCACC
1 AAAACAGCACC
*
85454000 AAAACAGCATC
1 AAAACAGCACC
*
85454011 AAAACAACACC
1 AAAACAGCACC
* *
85454022 AAAATACCACC
1 AAAACAGCACC
* *
85454033 AAAACAACACA
1 AAAACAGCACC
* * *
85454044 AAAATACCATC
1 AAAACAGCACC
85454055 AAAACAGCACC
1 AAAACAGCACC
85454066 AAAACAGCACC
1 AAAACAGCACC
* * *
85454077 CAAACAACAAC
1 AAAACAGCACC
85454088 AAAACAGCA-C
1 AAAACAGCACC
85454098 AAAA
1 AAAA
85454102 AAACAGCATC
Statistics
Matches: 81, Mismatches: 21, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
10 5 0.06
11 76 0.94
ACGTcount: A:0.60, C:0.31, G:0.04, T:0.04
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:85454288 original size:9 final size:9
Alignment explanation
Indices: 85454270--85454311 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
85454260 ATCGAAGAAA
*
85454270 CATCGGCCT
1 CATCGTCCT
85454279 CATCGTCCT
1 CATCGTCCT
* *
85454288 CGTTGTCCT
1 CATCGTCCT
85454297 CATCGTCCT
1 CATCGTCCT
85454306 CATCGT
1 CATCGT
85454312 TCTTGCAACC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.10, C:0.40, G:0.17, T:0.33
Consensus pattern (9 bp):
CATCGTCCT
Found at i:85461952 original size:31 final size:31
Alignment explanation
Indices: 85461911--85461974 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
85461901 CCTTTTCATA
* *
85461911 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
85461942 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
85461973 TT
1 TT
85461975 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:85462219 original size:24 final size:24
Alignment explanation
Indices: 85462167--85462356 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
85462157 GCTTTATCAT
* *
85462167 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
85462192 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
85462216 ATAACTGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
85462239 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
85462263 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
85462287 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
85462311 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
85462334 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
85462357 TCACTTCCTC
Statistics
Matches: 154, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.28
24 99 0.64
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:85462247 original size:47 final size:48
Alignment explanation
Indices: 85462166--85462357 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 48
85462156 TGCTTTATCA
* *
85462166 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
* *
85462215 TATAACTGGGGCATAAGCCC-TTTGATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
85462262 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
85462310 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
85462357 T
1 T
85462358 CACTTCCTCC
Statistics
Matches: 133, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
47 69 0.52
48 51 0.38
49 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:85462268 original size:71 final size:72
Alignment explanation
Indices: 85462167--85462357 Score: 298
Period size: 71 Copynumber: 2.7 Consensus size: 72
85462157 GCTTTATCAT
* *
85462167 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
85462231 GCCC-TTTG
64 GCCCTTTTG
* * *
85462239 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
85462304 CCTTTTG
66 CCTTTTG
85462311 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
85462358 CACTTCCTCC
Statistics
Matches: 110, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
71 76 0.69
72 34 0.31
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTG
Found at i:85462429 original size:9 final size:9
Alignment explanation
Indices: 85462415--85462491 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
85462405 ATCTCGTGTG
85462415 CATATCATA
1 CATATCATA
*
85462424 CATATCATGTG
1 CATATCA--TA
85462435 CATATCATA
1 CATATCATA
* *
85462444 CATGTCATGTG
1 CATATCA--TA
85462455 CATATCATA
1 CATATCATA
*
85462464 CATATCATGTG
1 CATATCA--TA
85462475 CATATCATA
1 CATATCATA
85462484 CATATCAT
1 CATATCAT
85462492 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:85462434 original size:20 final size:20
Alignment explanation
Indices: 85462411--85462493 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
85462401 GAACATCTCG
85462411 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
85462431 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
85462451 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
85462471 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
85462491 TGT
1 TGT
85462494 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:85462440 original size:11 final size:11
Alignment explanation
Indices: 85462411--85462482 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
85462401 GAACATCTCG
85462411 TGTGCATATCA
1 TGTGCATATCA
*
85462422 --TACATATCA
1 TGTGCATATCA
85462431 TGTGCATATCA
1 TGTGCATATCA
* *
85462442 --TACATGTCA
1 TGTGCATATCA
85462451 TGTGCATATCA
1 TGTGCATATCA
*
85462462 --TACATATCA
1 TGTGCATATCA
85462471 TGTGCATATCA
1 TGTGCATATCA
85462482 T
1 T
85462483 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:85462558 original size:25 final size:25
Alignment explanation
Indices: 85462530--85462577 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
85462520 ATGTATAAAC
* * *
85462530 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
85462555 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
85462578 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:85469408 original size:27 final size:26
Alignment explanation
Indices: 85469371--85469485 Score: 113
Period size: 27 Copynumber: 4.3 Consensus size: 26
85469361 AGCATGGCTG
*
85469371 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
* *
85469397 CCAGTTACAGATAATCGTGGCAGAGCCA
1 CCAG-AACAGATAAT-GTGACAGAGCCA
* *
85469425 CCAGAACAGATATATGTGGCTGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * * *
85469452 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
85469479 CCAGAAC
1 CCAGAAC
85469486 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.05
27 56 0.74
28 16 0.21
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:85469430 original size:54 final size:54
Alignment explanation
Indices: 85469371--85469485 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
85469361 AGCATGGCTG
* *
85469371 CCAGAACAGATA-ATGTGACAGAGTCACCAGTTACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
85469425 CCAGAACAGATATATGTGGCTGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
85469479 CCAGAAC
1 CCAGAAC
85469486 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 37 0.70
55 16 0.30
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:85471136 original size:26 final size:26
Alignment explanation
Indices: 85471100--85471209 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
85471090 CATGAAATTC
85471100 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
85471126 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
85471152 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
85471178 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
85471204 TTATCA
1 TTATCA
85471210 ATTTGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:85472425 original size:47 final size:46
Alignment explanation
Indices: 85472313--85472427 Score: 151
Period size: 47 Copynumber: 2.5 Consensus size: 46
85472303 GATTTCTTGT
* * **
85472313 GTGCCAGTGTAAGACAAGTCTGGGACATGCTTCGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
*
85472359 GTGCCAGTATAAGACCATGTCTGGGACATGGCATCGG-CACAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-AGATGA
85472407 GTGCCAGTGTAAGACATGTCT
1 GTGCCAGTGTAAGACATGTCT
85472428 TGTAACGCCC
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
46 13 0.22
47 24 0.40
48 23 0.38
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
Found at i:85472819 original size:26 final size:26
Alignment explanation
Indices: 85472760--85472894 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
85472750 TGATACAAAT
85472760 TGATAATAGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
85472785 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
85472811 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
85472837 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
85472863 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
85472889 TGATAA
1 TGATAA
85472895 GAATTTCATG
Statistics
Matches: 107, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
25 23 0.21
26 84 0.79
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:85474613 original size:27 final size:26
Alignment explanation
Indices: 85474509--85474623 Score: 113
Period size: 27 Copynumber: 4.3 Consensus size: 26
85474499 TGGAGGAAGC
* * *
85474509 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
85474536 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
* *
85474563 GTTTTGGTGGCTCTACCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* * *
85474590 GTATCTGGTGACTTTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
85474617 GTTCTGG
1 GTTCTGG
85474624 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.73
28 14 0.19
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:85474709 original size:19 final size:22
Alignment explanation
Indices: 85474685--85474724 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
85474675 CTCCCCACAC
85474685 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
85474704 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
85474725 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:85477572 original size:29 final size:29
Alignment explanation
Indices: 85477539--85477597 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
85477529 AAGAACAAAA
85477539 AGTAAAATAAATTAATCAAAACAATGATT
1 AGTAAAATAAATTAATCAAAACAATGATT
*
85477568 AGTAAAATAAGTTAATCAAAACAATGATT
1 AGTAAAATAAATTAATCAAAACAATGATT
85477597 A
1 A
85477598 CGTATACTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.58, C:0.07, G:0.08, T:0.27
Consensus pattern (29 bp):
AGTAAAATAAATTAATCAAAACAATGATT
Found at i:85477946 original size:3 final size:3
Alignment explanation
Indices: 85477938--85477973 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
85477928 AACTATTAGA
85477938 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
85477974 TATTATTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:85477978 original size:3 final size:3
Alignment explanation
Indices: 85477972--85478010 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
85477962 AATAATAATA
85477972 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
85478011 TAAAGTATAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:85482097 original size:12 final size:13
Alignment explanation
Indices: 85482073--85482101 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
85482063 GGGCTATAAC
85482073 TATTGCATTTATT
1 TATTGCATTTATT
85482086 TATTGC-TTTATT
1 TATTGCATTTATT
85482098 TATT
1 TATT
85482102 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:85488813 original size:2 final size:2
Alignment explanation
Indices: 85488806--85488836 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
85488796 TGAAAGTCGA
85488806 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85488837 TTTGAAAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:85489944 original size:38 final size:38
Alignment explanation
Indices: 85489888--85489967 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
85489878 GATGTGTATT
* *
85489888 CGGGTTAAATCCCGCAGGCCTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
85489926 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
85489964 CGGG
1 CGGG
85489968 CCATCGTGCC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.28
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:85490023 original size:43 final size:43
Alignment explanation
Indices: 85489939--85490170 Score: 290
Period size: 43 Copynumber: 5.4 Consensus size: 43
85489929 GATAAATCCC
* * * *
85489939 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCATCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
85489980 GCAGGCTTAGTGCTGGTGATGTGTATTCGGGCCTTCGTACCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
85490023 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
85490066 GCAGGCTTCA-TGCCGATGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTT-AGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * * **
85490109 GCAGGCTTCGTGCCGGTGATGTATATGCGGGCCTTTATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
85490152 ACAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
85490171 AATAATATGT
Statistics
Matches: 168, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
41 16 0.10
42 2 0.01
43 149 0.89
44 1 0.01
ACGTcount: A:0.15, C:0.23, G:0.32, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:85490561 original size:45 final size:43
Alignment explanation
Indices: 85490487--85490613 Score: 134
Period size: 45 Copynumber: 2.9 Consensus size: 43
85490477 TTGACTTGAT
* * **
85490487 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCC-TTGAGCCTAACAGGCTATAATGCCGGTGAGA-AC
85490532 TATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGT--GAAC
1 TATTCGGGCCTT-GAGCCTAACAGGCTATAATGCCGGTGAGAAC
* *
85490574 TGATATCGGGCCTTGAGCCTAACAGGCGA-AATGCCAGTGA
1 T-AT-TCGGGCCTTGAGCCTAACAGGCTATAATGCCGGTGA
85490614 ACTGAGAAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
42 11 0.15
43 18 0.25
44 11 0.15
45 31 0.44
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (43 bp):
TATTCGGGCCTTGAGCCTAACAGGCTATAATGCCGGTGAGAAC
Found at i:85490616 original size:42 final size:44
Alignment explanation
Indices: 85490535--85490618 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 44
85490525 GAGATACTAT
* *
85490535 TCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGAACTGATA
1 TCGGGCCTTCGAGCCTAACAGGCGATAATGCCAGTGAACTGATA
85490579 TCGGGCCTT-GAGCCTAACAGGCGA-AATGCCAGTGAACTGA
1 TCGGGCCTTCGAGCCTAACAGGCGATAATGCCAGTGAACTGA
85490619 GAAAAGTCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 15 0.39
43 14 0.37
44 9 0.24
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (44 bp):
TCGGGCCTTCGAGCCTAACAGGCGATAATGCCAGTGAACTGATA
Found at i:85495835 original size:40 final size:40
Alignment explanation
Indices: 85495776--85495983 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
85495766 CAATTGAATG
* * * *
85495776 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
85495816 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
85495856 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
85495896 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
85495936 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
85495976 ATATCCGG
1 ATATCCGG
85495984 TTGTATTCTG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:85495914 original size:80 final size:80
Alignment explanation
Indices: 85495777--85495983 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
85495767 AATTGAATGA
* * ** * * *
85495777 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
85495842 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
85495855 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
85495920 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
85495937 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
85495984 TTGTATTCTG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:85507062 original size:20 final size:20
Alignment explanation
Indices: 85507029--85507068 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
85507019 TCTCTCCCAA
*
85507029 AGTAATTATGAAAGTAAAAT
1 AGTAATTATAAAAGTAAAAT
* *
85507049 AGTAATTTTAAAAGTCAAAT
1 AGTAATTATAAAAGTAAAAT
85507069 TCAACAAAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.33
Consensus pattern (20 bp):
AGTAATTATAAAAGTAAAAT
Found at i:85509448 original size:4 final size:4
Alignment explanation
Indices: 85509439--85509489 Score: 93
Period size: 4 Copynumber: 12.8 Consensus size: 4
85509429 TTCTCGCAGA
*
85509439 ATAC ATAC ATTC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
85509487 ATA
1 ATA
85509490 GAGGTCATGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:85510274 original size:19 final size:19
Alignment explanation
Indices: 85510233--85510274 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
85510223 TTGTACGAGA
*
85510233 CAAATAAAAACTCGACTAT
1 CAAAAAAAAACTCGACTAT
85510252 -AAAAAAAAACTCAGA-TAT
1 CAAAAAAAAACTC-GACTAT
85510270 CAAAA
1 CAAAA
85510275 TTGAACATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.62, C:0.17, G:0.05, T:0.17
Consensus pattern (19 bp):
CAAAAAAAAACTCGACTAT
Found at i:85513608 original size:39 final size:40
Alignment explanation
Indices: 85513561--85513650 Score: 119
Period size: 39 Copynumber: 2.2 Consensus size: 40
85513551 TTGAATGAAT
*
85513561 AACGCCGCTAAAGAACAAGCATTAGTGGCGC-TTTTTAAA
1 AACGCCGCTAAAGAACAAGCACTAGTGGCGCTTTTTTAAA
* * *
85513600 AACGCCGCTAAAGATCGAGTACTAGTGGCGCTTTTTTTAAA
1 AACGCCGCTAAAGAACAAGCACTAGTGGCGC-TTTTTTAAA
*
85513641 AATGCCGCTA
1 AACGCCGCTA
85513651 TATGTACACC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
39 27 0.61
41 17 0.39
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (40 bp):
AACGCCGCTAAAGAACAAGCACTAGTGGCGCTTTTTTAAA
Found at i:85514187 original size:22 final size:21
Alignment explanation
Indices: 85514162--85514211 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
85514152 GAGTTACTAT
*
85514162 TTTAAGGTTTATGGATTATGAG
1 TTTAAGGATTATGGATTATG-G
* *
85514184 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
85514205 TTTAAGG
1 TTTAAGG
85514212 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:85514192 original size:15 final size:14
Alignment explanation
Indices: 85514167--85514201 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
85514157 ACTATTTTAA
*
85514167 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
85514181 GAGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
85514196 GGTTTA
1 GGTTTA
85514202 TGGTTTAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:85514576 original size:15 final size:15
Alignment explanation
Indices: 85514553--85514584 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
85514543 GAATTTTTTT
*
85514553 ATAATATAAATCTAA
1 ATAAGATAAATCTAA
85514568 ATAAGATAAATCTAA
1 ATAAGATAAATCTAA
85514583 AT
1 AT
85514585 TATTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (15 bp):
ATAAGATAAATCTAA
Found at i:85518744 original size:19 final size:19
Alignment explanation
Indices: 85518709--85518806 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
85518699 AGGTTACAAG
85518709 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
85518730 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
85518749 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
85518766 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
85518785 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
85518804 ATC
1 ATC
85518807 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:85518773 original size:36 final size:37
Alignment explanation
Indices: 85518709--85518806 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
85518699 AGGTTACAAG
85518709 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
85518749 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
85518785 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
85518807 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:85519227 original size:45 final size:45
Alignment explanation
Indices: 85519159--85519269 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 45
85519149 GAAAGGCGAT
* * *
85519159 ATCTGCTATCTTTGATCTACTCCCCGTCTAATACAGAGACACCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAAAGACACCAA
* * **
85519204 ATCTGTTATCTTTGATTTGCTCCCCGTTTAATACAAAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAAAGACACCAA
* *
85519249 ATCTGTCATCTTGGATCTGCT
1 ATCTGTTATCTTTGATCTGCT
85519270 TCGATGTAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (45 bp):
ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAAAGACACCAA
Found at i:85519466 original size:46 final size:46
Alignment explanation
Indices: 85519358--85519607 Score: 162
Period size: 44 Copynumber: 5.6 Consensus size: 46
85519348 ATCTTCAACT
* * * *
85519358 TGTTCCCTATAAACACAGGGATGCC--A--TGCTGAAATCTTCAATC
1 TGTTCCCTGTAAACACAGGAATGCCAGATCTGCT-ATATCTTCGATC
* * * *
85519401 TGCTTCGCTGTGAACACAGGAATGTCAGATCTGCTATATATTCGATC
1 TG-TTCCCTGTAAACACAGGAATGCCAGATCTGCTATATCTTCGATC
* * *
85519448 TGTTCCCTGTAAACACAGGGATGCCAAATCTGC--TATCTTC-AAC
1 TGTTCCCTGTAAACACAGGAATGCCAGATCTGCTATATCTTCGATC
* * * * * *
85519491 TTGTTCCCTATAAACAAAGGGATGCCATG-T-T--AAAATCTTTGATC
1 -TGTTCCCTGTAAACACAGGAATGCCA-GATCTGCTATATCTTCGATC
* * * * * *
85519535 TGCTTCGCTGCAAGCATAGGAATGTCAGATCTGCTATGTCTTCGATC
1 TG-TTCCCTGTAAACACAGGAATGCCAGATCTGCTATATCTTCGATC
*
85519582 TGTTCCCTGTAAACATAGGAATGCCA
1 TGTTCCCTGTAAACACAGGAATGCCA
85519608 AATCATCTTG
Statistics
Matches: 156, Mismatches: 36, Indels: 27
0.71 0.16 0.12
Matches are distributed among these distances:
43 13 0.08
44 69 0.44
45 1 0.01
46 47 0.30
47 22 0.14
48 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (46 bp):
TGTTCCCTGTAAACACAGGAATGCCAGATCTGCTATATCTTCGATC
Found at i:85519497 original size:134 final size:134
Alignment explanation
Indices: 85519333--85519611 Score: 434
Period size: 134 Copynumber: 2.1 Consensus size: 134
85519323 CGAATATGGA
* *
85519333 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCA
1 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACAAAGGGATGCCATGCTAAAATCTTCA
*
85519398 ATCTGCTTCGCTGTGAA-CACAGGAATGTCAGATCTGCTATATATTCGATCTGTTCCCTGTAAAC
66 ATCTGCTTCGCTG-CAAGCACAGGAATGTCAGATCTGCTATATATTCGATCTGTTCCCTGTAAAC
85519462 ACAGG
130 ACAGG
* * **
85519467 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACAAAGGGATGCCATGTTAAAATCTTTG
1 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACAAAGGGATGCCATGCTAAAATCTTCA
* * *
85519532 ATCTGCTTCGCTGCAAGCATAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
66 ATCTGCTTCGCTGCAAGCACAGGAATGTCAGATCTGCTATATATTCGATCTGTTCCCTGTAAACA
*
85519597 TAGG
131 CAGG
*
85519601 AATGCCAAATC
1 GATGCCAAATC
85519612 ATCTTGGATC
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
133 2 0.02
134 130 0.98
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (134 bp):
GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACAAAGGGATGCCATGCTAAAATCTTCA
ATCTGCTTCGCTGCAAGCACAGGAATGTCAGATCTGCTATATATTCGATCTGTTCCCTGTAAACA
CAGG
Found at i:85519512 original size:44 final size:44
Alignment explanation
Indices: 85519333--85519517 Score: 171
Period size: 44 Copynumber: 4.2 Consensus size: 44
85519323 CGAATATGGA
*
85519333 GATGCCAAATCTACTATCTTCAA-CTTGTTCCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGG
** * * *
85519377 GATGCC--ATGCTGAAATCTTCAATCTGCTTCGCTGTGAACACAGG
1 GATGCCAAAT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGG
* * * * * *
85519421 AATGTCAGATCTGCTATATATTCGATCTGTTCCCTGTAAACACAGG
1 GATGCCAAATCTGC--TATCTTCAATCTGTTCCCTATAAACACAGG
*
85519467 GATGCCAAATCTGCTATCTTCAA-CTTGTTCCCTATAAACAAAGG
1 GATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGG
85519511 GATGCCA
1 GATGCCA
85519518 TGTTAAAATC
Statistics
Matches: 112, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 56 0.50
45 3 0.03
46 28 0.25
47 10 0.09
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
GATGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAGG
Found at i:85519721 original size:44 final size:44
Alignment explanation
Indices: 85519664--85520623 Score: 510
Period size: 44 Copynumber: 21.9 Consensus size: 44
85519654 GTTGTTCTTC
* ** *
85519664 TCTTCGATATGCTCTCTGATAATACAGAGACGCCAAATCTTCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
*
85519708 TCTTCGATCTGCTCTCTGCCAATATAGAGATGCCAAATCTAT-TA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCT-TCTA
*
85519752 TCTTCGATCTGCTCTCTGCCAATACAGAGATGTCAAATCTAT-TA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCT-TCTA
*
85519796 TCTTCGATCTGCTCTCTTCCAATACAGAGATGCCAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* ** * * * ** *
85519836 TCTTAGA-CTTGCT-TCAACGTAA-ACACGTGGAAGCCAAATCAACTG
1 TCTTCGATC-TGCTCTCTGC-CAATACA-G-AGATGCCAAATCTTCTA
* *
85519881 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCGAATCTGTC-A
1 TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCT-TCTA
* * *
85519926 TCTTTGATCTACTCTCTGCCAATACAGAGATGCCAAATCTACTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* *
85519970 TCTTCGATCTACTATCTGCCAATACAGAGATGCCAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* ** * * * **
85520010 TCTTAGA-CTTGCT-TCAACGTAA-ACACGTGGAAGCCAAATCAGCTA
1 TCTTCGATC-TGCTCTCTGC-CAATACA-G-AGATGCCAAATCTTCTA
* * *
85520055 TGTCTTCGATCTGCTCTCCGCTGAATATAGAGATGCCAAATCTGTC-A
1 --TCTTCGATCTGCTCTCTGC-CAATACAGAGATGCCAAATCT-TCTA
*
85520102 TCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGT-TA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCT-TCTA
* *
85520146 TCTTTGATCTGCTTTCTGCCAATACAGAGATGCCAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* * * ** * * * **
85520186 TATTAGATTTGCT-TCAACGTAA-ACACATGAAAGCCAAATCAGCTA
1 TCTTCGATCTGCTCTCTGC-CAATACAGA-G-ATGCCAAATCTTCTA
* * * *
85520231 TGTCTTCTATCTGCTCTCCGTCAGATACAGAGATGCCAAATATGTC-A
1 --TCTTCGATCTGCTCTCTGCCA-ATACAGAGATGCCAAATCT-TCTA
*
85520278 TCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGT-TA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCT-TCTA
* * *
85520322 TCTTTGATCTACTCTTTGCCAATACAGAGATGCCAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* ** * * * * **
85520362 TCTTAGAAT-TGCT-TCAACGTAA-ACACATGAAAGCTAAATCAGCTA
1 TCTTCG-ATCTGCTCTCTGC-CAATACAGA-G-ATGCCAAATCTTCTA
* * *
85520407 TGTCTTCGATCTGCTCTCCGTCGAATACAGAGATGCCAAATCAGTC-A
1 --TCTTCGATCTGCTCTCTG-CCAATACAGAGATGCCAAATC-TTCTA
* * *
85520454 TCTTCGATCTACTCTCTGCCAATACAGAGACGCTAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* * ** * * * *
85520494 TCTTAGATTTGCT-TCAACGTAA-ACACGTGAAAGCCAAAT-TAGCTA
1 TCTTCGATCTGCTCTCTGC-CAATACA-GAG-ATGCCAAATCT-TCTA
* * * **
85520539 TGTCTTCGATCTGTTCCCTGCCAATACAGAGACGCCAAATCTAGTA
1 --TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* *
85520585 TCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATC
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
85520624 ATCTTGGATC
Statistics
Matches: 707, Mismatches: 135, Indels: 148
0.71 0.14 0.15
Matches are distributed among these distances:
39 33 0.05
40 73 0.10
41 38 0.05
43 1 0.00
44 340 0.48
45 91 0.13
46 20 0.03
47 76 0.11
48 24 0.03
49 11 0.02
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
Found at i:85520140 original size:176 final size:176
Alignment explanation
Indices: 85519708--85520492 Score: 1166
Period size: 176 Copynumber: 4.5 Consensus size: 176
85519698 AAATCTTCTA
* * * * * *
85519708 TCTTCGATCTGCTCTCTGC-CAATATAGAGATGCCAAATCTATTATCTTCGATCTGCTCTCTGCC
1 TCTTCGATCTGCTCTCCGCTGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
* * *
85519772 AATACAGAGATGTCAAATCTATTATCTTCGATCTGCTCTCTTCCAATACAGAGATGCCAAATCAT
66 AATACAGAGATGCCAAATCTATTATCTTCGATCTACTCTCTGCCAATACAGAGATGCCAAATCAT
* * *
85519837 CTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAAC--TG
131 CTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * *
85519881 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCGAATCTGTCATCTTTGATCTACTCTCTGCC
1 TCTTCGATCTGCTCTCCGCTGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
* *
85519946 AATACAGAGATGCCAAATCTACTATCTTCGATCTACTATCTGCCAATACAGAGATGCCAAATCAT
66 AATACAGAGATGCCAAATCTATTATCTTCGATCTACTCTCTGCCAATACAGAGATGCCAAATCAT
* *
85520011 CTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
131 CTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
*
85520057 TCTTCGATCTGCTCTCCGCTGAATATAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
1 TCTTCGATCTGCTCTCCGCTGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
* * * *
85520122 AATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTTTCTGCCAATACAGAGATGCCAAATCAT
66 AATACAGAGATGCCAAATCTATTATCTTCGATCTACTCTCTGCCAATACAGAGATGCCAAATCAT
* *
85520187 ATTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
131 CTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * *
85520233 TCTTCTATCTGCTCTCCG-TCAGATACAGAGATGCCAAATATGTCATCTTTGATCTGCTCTCTGC
1 TCTTCGATCTGCTCTCCGCTGA-ATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGC
* * *
85520297 CAATACAGAGATGCCAAATCTGTTATCTTTGATCTACTCTTTGCCAATACAGAGATGCCAAATCA
65 CAATACAGAGATGCCAAATCTATTATCTTCGATCTACTCTCTGCCAATACAGAGATGCCAAATCA
* *
85520362 TCTTAGAATTGCTTCAACGTAAACACATGAAAGCTAAATCAGCTATG
130 TCTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * *
85520409 TCTTCGATCTGCTCTCCG-TCGAATACAGAGATGCCAAATCAGTCATCTTCGATCTACTCTCTGC
1 TCTTCGATCTGCTCTCCGCT-GAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGC
* *
85520473 CAATACAGAGACGCTAAATC
65 CAATACAGAGATGCCAAATC
85520493 ATCTTAGATT
Statistics
Matches: 562, Mismatches: 45, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
173 18 0.03
174 139 0.25
175 2 0.00
176 402 0.72
177 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (176 bp):
TCTTCGATCTGCTCTCCGCTGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
AATACAGAGATGCCAAATCTATTATCTTCGATCTACTCTCTGCCAATACAGAGATGCCAAATCAT
CTTAGACTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
Found at i:85521609 original size:16 final size:16
Alignment explanation
Indices: 85521581--85521620 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
85521571 GGCCTCTCCA
*
85521581 TTTTTTTTCTTTTTTC
1 TTTTTTTTCTTTTCTC
85521597 TTTTTATTT-TTTTCTC
1 TTTTT-TTTCTTTTCTC
85521613 TTTTTTTT
1 TTTTTTTT
85521621 GAAATAGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 16 0.73
17 3 0.14
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTTTTTCTTTTCTC
Found at i:85526308 original size:22 final size:21
Alignment explanation
Indices: 85526278--85526324 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
85526268 TACAAATTAA
85526278 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
85526300 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
85526321 ATCT
1 ATCT
85526325 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:85526318 original size:16 final size:16
Alignment explanation
Indices: 85526297--85526347 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
85526287 ATTACAAGAT
85526297 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
85526313 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
85526332 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
85526348 ATATTTCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:85526330 original size:19 final size:21
Alignment explanation
Indices: 85526295--85526337 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
85526285 AGATTACAAG
85526295 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
85526316 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
85526335 ATC
1 ATC
85526338 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:85526885 original size:51 final size:51
Alignment explanation
Indices: 85526830--85526932 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
85526820 ATATTGAGGA
85526830 CAAAATGAAATGAAAAAGGTAGAAAGAAAGGAACTCTAGCTATCTCAAGTC
1 CAAAATGAAATGAAAAAGGTAGAAAGAAAGGAACTCTAGCTATCTCAAGTC
85526881 CAAAATGAAATGAAAAAGGTAGAAAGAAAGGAACTCTAGCTATCTCAAGTC
1 CAAAATGAAATGAAAAAGGTAGAAAGAAAGGAACTCTAGCTATCTCAAGTC
85526932 C
1 C
85526933 CTACTAAATT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.17
Consensus pattern (51 bp):
CAAAATGAAATGAAAAAGGTAGAAAGAAAGGAACTCTAGCTATCTCAAGTC
Found at i:85527674 original size:127 final size:127
Alignment explanation
Indices: 85527533--85527784 Score: 495
Period size: 127 Copynumber: 2.0 Consensus size: 127
85527523 TTATTACTTG
85527533 AAATTTTAAAGAATTTATATATTTTTTGAATGCTTTATTATTGTTGACTTAAATTGTTACATCAA
1 AAATTTTAAAGAATTTATATATTTTTTGAATGCTTTATTATTGTTGACTTAAATTGTTACATCAA
85527598 CATCATAATAGTTATTACACCAAATATGTTCTACTTGTTGACTTGGGATGATTTCAATATAT
66 CATCATAATAGTTATTACACCAAATATGTTCTACTTGTTGACTTGGGATGATTTCAATATAT
85527660 AAATTTTAAAGAATTTATATATTTTTTGAATGCTTTATTATTGTTGACTTAAATTGTTACATCAA
1 AAATTTTAAAGAATTTATATATTTTTTGAATGCTTTATTATTGTTGACTTAAATTGTTACATCAA
*
85527725 CATCATAATAGTTATTACACCAAATATGTTCTACTTGTTGACTTGGGATGTTTTCAATAT
66 CATCATAATAGTTATTACACCAAATATGTTCTACTTGTTGACTTGGGATGATTTCAATAT
85527785 GTTCTTTTAT
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 124 1.00
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.45
Consensus pattern (127 bp):
AAATTTTAAAGAATTTATATATTTTTTGAATGCTTTATTATTGTTGACTTAAATTGTTACATCAA
CATCATAATAGTTATTACACCAAATATGTTCTACTTGTTGACTTGGGATGATTTCAATATAT
Found at i:85528434 original size:23 final size:23
Alignment explanation
Indices: 85528404--85529223 Score: 543
Period size: 23 Copynumber: 35.8 Consensus size: 23
85528394 GTAAATGTTA
*
85528404 CAAATTGAAGTGTTTAAGTACTG
1 CAAATTGAAGTGTTTAAGTGCTG
85528427 CAAATTGAAGTGTTT-AGTTGCTG
1 CAAATTGAAGTGTTTAAG-TGCTG
* *
85528450 GAAATTG-AGATGTTTTA-TCGCTG
1 CAAATTGAAG-TGTTTAAGT-GCTG
* * * * *
85528473 -TAATTGAGGTGTATAAATGTTG
1 CAAATTGAAGTGTTTAAGTGCTG
** * *
85528495 TTAATTGAAATGTTAAAGTGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
*
85528518 CAAATTGAAGTGTTTTAA-TGCTA
1 CAAATTGAAGTG-TTTAAGTGCTG
* * *
85528541 TAAATTGAGGTGTTAAAGTGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
85528564 CAAATTGAAGTGTTTGAA-TGCTG
1 CAAATTGAAGTGTTT-AAGTGCTG
* *
85528587 TAAATTGAAGTGTTTAAATGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
* * * *
85528610 TAAATTGAAGTGCTTAAATGTTG
1 CAAATTGAAGTGTTTAAGTGCTG
* *
85528633 CAAATTGGAGTGTTTAAGTACTG
1 CAAATTGAAGTGTTTAAGTGCTG
*
85528656 CAAATTGAAGCGTTT-AGTTGCTG
1 CAAATTGAAGTGTTTAAG-TGCTG
* * *
85528679 GACATTG-AGATGTTTTA-TCGCTG
1 CAAATTGAAG-TGTTTAAGT-GCTG
* * * * *
85528702 -TAATTGAGGTGTATAAATGTTG
1 CAAATTGAAGTGTTTAAGTGCTG
** * *
85528724 TTAATTGAGGTGTTAAAGTGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
85528747 CAAATTGAAGTGTTTGAA-TGCTG
1 CAAATTGAAGTGTTT-AAGTGCTG
* *
85528770 TAAATTGAAGTGTTTAAATGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
* * * *
85528793 TAAATTGAAGTGCTTAAATGTTG
1 CAAATTGAAGTGTTTAAGTGCTG
* *
85528816 CAAATTAAAGTGTTTAAGTACTG
1 CAAATTGAAGTGTTTAAGTGCTG
*
85528839 CAAATTGAAGTATTT-AGTTGCTG
1 CAAATTGAAGTGTTTAAG-TGCTG
* * *
85528862 GACATTG-AGATGTTTTA-TCGCTG
1 CAAATTGAAG-TGTTTAAGT-GCTG
* * * * *
85528885 -TAATTGAGGTGTATAAATGTTG
1 CAAATTGAAGTGTTTAAGTGCTG
** * *
85528907 TTAATTGAGGTGTTGAAGTGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
85528930 CAAATTGAAGTGTTTGAA-TGCTG
1 CAAATTGAAGTGTTT-AAGTGCTG
* *
85528953 TAAATTGAAGTGTTTAAATGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
* ** * *
85528976 TAAATTGAAGTACTTAAATGTTG
1 CAAATTGAAGTGTTTAAGTGCTG
* *
85528999 CAAATTGAAGTCTTTAAGTACTG
1 CAAATTGAAGTGTTTAAGTGCTG
85529022 CAAATTGAAGTGTTT-AGTTGCTG
1 CAAATTGAAGTGTTTAAG-TGCTG
* * *
85529045 GACATTG-AGATGTTTTA-T-C-G
1 CAAATTGAAG-TGTTTAAGTGCTG
* * * *
85529065 CTATAATTGAGGTGTATAAATGTTG
1 C-A-AATTGAAGTGTTTAAGTGCTG
** * * *
85529090 TTAATTG-AGATGTTAAAATGCTA
1 CAAATTGAAG-TGTTTAAGTGCTG
*
85529113 CAAATTGAAGTGTTAAAGTGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
85529136 CAAATTGAAGTGTTTGAA-TGCTG
1 CAAATTGAAGTGTTT-AAGTGCTG
*
85529159 CAAATTGAAGTGTTTAAATGCTG
1 CAAATTGAAGTGTTTAAGTGCTG
* * * *
85529182 TAAATTGAAGTGCTTAAATGTTG
1 CAAATTGAAGTGTTTAAGTGCTG
85529205 CAAATTGAAGTGTTTAAGT
1 CAAATTGAAGTGTTTAAGT
85529224 ACTTATTTTG
Statistics
Matches: 634, Mismatches: 121, Indels: 84
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.00
21 2 0.00
22 79 0.12
23 533 0.84
24 18 0.03
25 1 0.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (23 bp):
CAAATTGAAGTGTTTAAGTGCTG
Found at i:85528742 original size:183 final size:183
Alignment explanation
Indices: 85528543--85529220 Score: 1142
Period size: 183 Copynumber: 3.7 Consensus size: 183
85528533 TAATGCTATA
85528543 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
* *
85528608 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGGAGTGTTTAAGTACTGCAAATTGAAGCGTTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
85528673 TTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
131 TTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
85528726 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
* *
85528791 TGTAAATTGAAGTGCTTAAATGTTGCAAATTAAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
85528856 TTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
131 TTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
*
85528909 AATTGAGGTGTTGAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
* *
85528974 TGTAAATTGAAGTACTTAAATGTTGCAAATTGAAGTCTTTAAGTACTGCAAATTGAAGTGTTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
*
85529039 TTGCTGGACATTGAGATGTTTTATCGCTATAATTGAGGTGTATAAATGTTGTT
131 TTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
* * * * * *
85529092 AATTGAGATGTTAAAATGCTACAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTTTGAATG
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAA-TGCTGTAAATTGAAGTGTTTAAATG
* * * * * * **
85529156 CTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTA
65 CTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTA
85529221 AGTACTTATT
Statistics
Matches: 467, Mismatches: 27, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
182 4 0.01
183 463 0.99
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.37
Consensus pattern (183 bp):
AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
TTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
Found at i:85528800 original size:229 final size:229
Alignment explanation
Indices: 85528395--85528849 Score: 732
Period size: 229 Copynumber: 2.0 Consensus size: 229
85528385 ATATTAGTAG
*
85528395 TAAATGTTACAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGA
1 TAAATGTTACAAATTGAAGTGTTTAAGTACTGCAAATTGAAGCGTTTAGTTGCTGGAAATTGAGA
85528460 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
66 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
* * * * *
85528525 AAGTGTTTTAATGCTATAAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAA
131 AAGTGTTTGAATGCTATAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGCAA
* * *
85528590 ATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCT
196 ATTAAAGTGTTTAAATACTGCAAATTGAAGTGCT
* * *
85528624 TAAATGTTGCAAATTGGAGTGTTTAAGTACTGCAAATTGAAGCGTTTAGTTGCTGGACATTGAGA
1 TAAATGTTACAAATTGAAGTGTTTAAGTACTGCAAATTGAAGCGTTTAGTTGCTGGAAATTGAGA
**
85528689 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTG
66 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
* * *
85528754 AAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGCTTAAATGTTGCA
131 AAGTGTTTGAATGCTATAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGCA
*
85528818 AATTAAAGTGTTTAAGTACTGCAAATTGAAGT
195 AATTAAAGTGTTTAAATACTGCAAATTGAAGT
85528850 ATTTAGTTGC
Statistics
Matches: 207, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
229 202 0.98
230 5 0.02
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (229 bp):
TAAATGTTACAAATTGAAGTGTTTAAGTACTGCAAATTGAAGCGTTTAGTTGCTGGAAATTGAGA
TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTG
AAGTGTTTGAATGCTATAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGCAA
ATTAAAGTGTTTAAATACTGCAAATTGAAGTGCT
Found at i:85529035 original size:206 final size:205
Alignment explanation
Indices: 85528404--85529226 Score: 830
Period size: 206 Copynumber: 4.0 Consensus size: 205
85528394 GTAAATGTTA
85528404 CAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATC
1 CAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATC
* * * *
85528469 GCTGTAATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTTT
66 GCTGTAATTGAGATGT-TAAATGCTGTTAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTG
** * * * * *
85528534 AATGCTATAAATTGAGGTG-TTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGT
130 AATGCTGCAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGCTTAAATGCTGCAAATTGAAGT
* * *
85528598 GTTTAAATGCTG
194 CTTTAAGTACTG
* * * ** * * * *
85528610 TAAATTGAAGTGCTTAAATGTTGCAAATTGGAGTGTTTAAG-TACTGCAAATTGA-A-GCGTTTA
1 CAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTT-AGTTGCTGGAAATTGAGATG-TTTTA
* * ** * * ** *
85528672 GTTGCTGGACATTGAGATGTTTTATCGCTG-TAATTGAGGTGTATAAA-TGTTGTTAATTGAGGT
64 -TCGCTGTA-ATTGAGATGTTAAAT-GCTGTTAATTGAAGTGT-TAAAGTGCTGCAAATTGAAGT
* * * *
85528735 G-TTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATT
125 GTTTGAA-TGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGCTGCAAATT
*
85528799 GAAGTGCTTAAATGT--TG
189 GAAGT-CTTTAA-GTACTG
* * *
85528816 CAAATTAAAGTGTTTAAGTACTGCAAATTGAAGTATTTAGTTGCTGGACATTGAGATGTTTTATC
1 CAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATC
* * * *
85528881 GCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTGAAGTGCTGCAAATTGAAGTGTTTG
66 GCTGTAATTGAGATGT-TAAATGCTGTTAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTG
* * *
85528946 AATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTACTTAAATGTTGCAAATTGAAGTC
130 AATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTC
85529011 TTTAAGTACTG
195 TTTAAGTACTG
* * * * *
85529022 CAAATTGAAGTGTTT-AGTTGCTGGACATTG-AGATGTTTTA-TCGCT--ATAATTGAGGTGTAT
1 CAAATTGAAGTGTTTAAG-TACTGCAAATTGAAG-TG-TTTAGTTGCTGGA-AATTGAGATGT-T
** * ***
85529082 AAAT-GTTGTTAATTGAGATGTTAAAATGCTACAAATTGAAGTGTTAAAGTGCTGCAAATTGAAG
61 TTATCGCTG-TAATTGAGATGTT-AAATGCTGTTAATTGAAGTGTTAAAGTGCTGCAAATTGAAG
*
85529146 TGTTTGAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATT
124 TGTTTGAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGCTGCAAATT
*
85529211 GAAGTGTTTAAGTACT
189 GAAGTCTTTAAGTACT
85529227 TATTTTGGGT
Statistics
Matches: 508, Mismatches: 83, Indels: 52
0.79 0.13 0.08
Matches are distributed among these distances:
204 4 0.01
205 48 0.09
206 415 0.82
207 39 0.08
208 2 0.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (205 bp):
CAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATC
GCTGTAATTGAGATGTTAAATGCTGTTAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGA
ATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTCT
TTAAGTACTG
Found at i:85529074 original size:160 final size:158
Alignment explanation
Indices: 85528469--85529193 Score: 471
Period size: 160 Copynumber: 4.5 Consensus size: 158
85528459 ATGTTTTATC
* * ** * *
85528469 GCTGT-AATTGAGGTGTATAAATGTTGTTAATTGAAATG-TTAAAGTGCTGCAAATTGAAGTGTT
1 GCTGTAAATTGAAGTGT-TAAATGCTGCAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGT-AT
** * ** * * *
85528532 TTAA-TGCTATAAATTGAGGTGTTAAAGT-GCTGCAAATTGA-AGTGTTTGAATGCTG-TAAATT
63 TTAAGTGCTGCAAATTGAAGTGTTTTA-TCGCTG-GAATTGAGA-TGTATAAATGCTGAT-AATT
* * *
85528593 GAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAAT
124 GAGGTG-TTGAATGCTGTAAATTGAAGTGTTTAAAT
* * * * * * ** * *
85528629 GTTGCAAATTGGAGTGTTTAAGTACTGCAAATTGAAGCGTTTAGTTGCTGGACATTGAGATGT-T
1 GCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGA-A-GTAT
* * ** * * *
85528693 TT-A-TCGCTG-TAATTGAGGTGTATAAAT-GTTGTTAATTGAGGTGT-TAAAGTGCTGCA-AAT
63 TTAAGT-GCTGCAAATTGAAGTGT-TTTATCGCTG-GAATTGAGATGTATAAA-TGCTG-ATAAT
*
85528752 TGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAAT
123 TGAGGTG-TTGAATGCTGTAAATTGAAGTGTTTAAAT
* * * *
85528789 GCTGTAAATTGAAGTGCTTAAATGTTGCAAATTAAAGTGTTTAAGTACTGCAAATTGAAGTATTT
1 GCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTATTT
* * * * * *
85528854 -AGTTGCTGGACATTG-AGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGG
65 AAG-TGCTGCAAATTGAAG-TGTTTTATCGCTGGAATTGAGATGTATAAATGCTGATAATTGAGG
* *
85528917 TGTTGAAGTGCTGCAAATTGAAGTGTTTGAAT
128 TGTTGAA-TGCTGTAAATTGAAGTGTTTAAAT
* ** * *
85528949 GCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTACTTAAATGTTGCAAATTGAAGTCTTT
1 GCTGTAAATTGAAGTG-TTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTATTT
* * **
85529014 AAGTACTGCAAATTGAAGTG-TTTAGTTGCTGGACATTGAGATGT-TTTATCGCT-ATAATTGAG
65 AAGTGCTGCAAATTGAAGTGTTTTA-TCGCTGGA-ATTGAGATGTATAAAT-GCTGATAATTGAG
* * * *
85529076 GTGTATAAATGTTGTTAATTG-AGATGTTAAAAT
127 GTGT-TGAATGCTGTAAATTGAAG-TGTTTAAAT
** * *
85529109 GCTACAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGCAAATTGAAGTGTTT
1 GCTGTAAATTGAAGTGTTAAA-TGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTATTT
* *
85529174 AAATGCTGTAAATTGAAGTG
65 AAGTGCTGCAAATTGAAGTG
85529194 CTTAAATGTT
Statistics
Matches: 451, Mismatches: 86, Indels: 56
0.76 0.15 0.09
Matches are distributed among these distances:
158 2 0.00
159 24 0.05
160 342 0.76
161 76 0.17
162 5 0.01
163 2 0.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (158 bp):
GCTGTAAATTGAAGTGTTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTATTTA
AGTGCTGCAAATTGAAGTGTTTTATCGCTGGAATTGAGATGTATAAATGCTGATAATTGAGGTGT
TGAATGCTGTAAATTGAAGTGTTTAAAT
Found at i:85529181 original size:137 final size:137
Alignment explanation
Indices: 85528932--85529181 Score: 326
Period size: 137 Copynumber: 1.8 Consensus size: 137
85528922 AAGTGCTGCA
* * * ** *
85528932 AATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTACTTAAATGT
1 AATTGAAGTGTATAAATGCTGTAAATTGAAGTGTTAAAATGCTACAAATTGAAGTACTTAAATGC
**
85528997 TGCAAATTGAAGTCTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTA
66 TGCAAATTGAAGTCTTTAAGTACTGCAAATTGAAGTGTTTAAATGCTGGACATTGAGATGTTTTA
85529062 TCGCTAT
131 TCGCTAT
* * * *
85529069 AATTGAGGTGTATAAATGTTGTTAATTG-AGATGTTAAAATGCTACAAATTGAAGT-GTTAAAGT
1 AATTGAAGTGTATAAATGCTGTAAATTGAAG-TGTTAAAATGCTACAAATTGAAGTACTTAAA-T
* *
85529132 GCTGCAAATTGAAGTGTTTGAA-TGCTGCAAATTGAAGTGTTTAAATGCTG
64 GCTGCAAATTGAAGTCTTT-AAGTACTGCAAATTGAAGTGTTTAAATGCTG
85529182 TAAATTGAAG
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
136 7 0.07
137 87 0.91
138 2 0.02
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (137 bp):
AATTGAAGTGTATAAATGCTGTAAATTGAAGTGTTAAAATGCTACAAATTGAAGTACTTAAATGC
TGCAAATTGAAGTCTTTAAGTACTGCAAATTGAAGTGTTTAAATGCTGGACATTGAGATGTTTTA
TCGCTAT
Found at i:85535851 original size:28 final size:28
Alignment explanation
Indices: 85535782--85535882 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
85535772 GACAAGATTG
* * * *
85535782 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
85535812 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
85535840 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
85535869 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85535883 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:85543806 original size:28 final size:28
Alignment explanation
Indices: 85543737--85543837 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
85543727 GACAAGATTG
* * * *
85543737 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
85543767 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
85543795 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
85543824 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
85543838 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:85547414 original size:77 final size:79
Alignment explanation
Indices: 85547322--85547468 Score: 210
Period size: 77 Copynumber: 1.9 Consensus size: 79
85547312 TATAGCGACT
* * *
85547322 TGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAG
1 TGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAG
85547384 CCCGGATTTATTAAC
65 CCCGGATTTATTAAC
** *
85547399 TGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 TGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
85547464 CCGGA
66 CCGGA
85547469 CATCATTCGA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
76 3 0.05
77 31 0.51
78 17 0.28
79 10 0.16
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
TGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
CCGGATTTATTAAC
Found at i:85547468 original size:40 final size:39
Alignment explanation
Indices: 85547286--85547468 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 39
85547276 ACGACTCGCT
* ** * **
85547286 CAAATGCCTTTGGGACGAAGCCCGGTTATAGCGACTTGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * *
85547326 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* *
85547366 CAAAGCCTTCGGGA-TTAGCCCGGATTTATTAAC-TGCA
1 CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
* * * *
85547403 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCA
85547444 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
85547469 CATCATTCGA
Statistics
Matches: 114, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
37 8 0.07
38 24 0.21
39 26 0.23
40 47 0.41
41 9 0.08
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (39 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
Found at i:85553004 original size:17 final size:17
Alignment explanation
Indices: 85552982--85553018 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
85552972 ACATTTGAAT
85552982 GGAGGAGAAGTGGAGTG
1 GGAGGAGAAGTGGAGTG
85552999 GGAGGAGAAGTGGAGTG
1 GGAGGAGAAGTGGAGTG
85553016 GGA
1 GGA
85553019 ACCGATGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.59, T:0.11
Consensus pattern (17 bp):
GGAGGAGAAGTGGAGTG
Found at i:85558212 original size:206 final size:206
Alignment explanation
Indices: 85557850--85558405 Score: 925
Period size: 206 Copynumber: 2.7 Consensus size: 206
85557840 GCAGATCTGG
*
85557850 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
* *
85557915 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
85557980 AGAGCAGATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
85558045 CAGATGATTAGA
195 CAGATGATTAGA
*
85558057 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCT
* * *
85558121 GATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
85558186 AGAACAAATCGAAGTTTGGCGTCTCCATATTGGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
85558251 CAGATGATTAGA
195 CAGATGATTAGA
* * * *
85558263 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAACTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
85558328 CTTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGG
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
85558393 GAACAAATCGAAG
131 GAACAAATCGAAG
85558406 AAGCAGATTT
Statistics
Matches: 325, Mismatches: 22, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
205 1 0.00
206 317 0.98
207 7 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:85560217 original size:16 final size:17
Alignment explanation
Indices: 85560196--85560230 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
85560186 AAAAATTGTT
85560196 TTACTTTTC-TATATTA
1 TTACTTTTCATATATTA
85560212 TTACTTTTCATATATTA
1 TTACTTTTCATATATTA
85560229 TT
1 TT
85560231 TCATGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
TTACTTTTCATATATTA
Found at i:85562201 original size:139 final size:139
Alignment explanation
Indices: 85561951--85562228 Score: 475
Period size: 139 Copynumber: 2.0 Consensus size: 139
85561941 GAAGATTTTG
85561951 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCCCGAAGTAATAAAATGCCACATCCAA
1 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCCCGAAGTAATAAAATGCCACATCCAA
*
85562016 TATGTTAGGACACAACATTTCAGACCCTCAAAAATAAGTTGGTCTTTCGATTTTCAAAACTCACG
66 TATGTTAGGACACAACATTTCAGACCCACAAAAATAAGTTGGTCTTTCGATTTTCAAAACTCACG
85562081 TGTTTTAAT
131 TGTTTTAAT
* * * * *
85562090 CTTGAGTAAATCGAAATGGATTTTAAAGACCTTCTTGTCTCGAAGTAATAAAATGCCACGTCCAG
1 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCCCGAAGTAATAAAATGCCACATCCAA
* * *
85562155 TATGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGTCTTTCGATTTTCAAAATTCACG
66 TATGTTAGGACACAACATTTCAGACCCACAAAAATAAGTTGGTCTTTCGATTTTCAAAACTCACG
85562220 TGTTTTAAT
131 TGTTTTAAT
85562229 TTTAGAAGGT
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 130 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (139 bp):
CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCCCGAAGTAATAAAATGCCACATCCAA
TATGTTAGGACACAACATTTCAGACCCACAAAAATAAGTTGGTCTTTCGATTTTCAAAACTCACG
TGTTTTAAT
Found at i:85562752 original size:3 final size:3
Alignment explanation
Indices: 85562744--85562863 Score: 64
Period size: 3 Copynumber: 38.7 Consensus size: 3
85562734 AAAAACATAT
* * * *
85562744 ATA ATA AT- ATG ACA ATA ATA ATA ACA ATA ATAA ATAA ATAA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A AT-A ATA ATA
* * * * * *
85562791 ATA ATA AAA ATA ATA GTA ATG ATA ATG GTA ATA ATAA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
* *
85562837 GTA ACA ATA ATA CA-A ATA ATAA ATA AT
1 ATA ATA ATA ATA -ATA ATA AT-A ATA AT
85562864 CTAAAGTTTG
Statistics
Matches: 88, Mismatches: 23, Indels: 12
0.72 0.19 0.10
Matches are distributed among these distances:
2 3 0.03
3 67 0.76
4 18 0.20
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:85562847 original size:31 final size:31
Alignment explanation
Indices: 85562791--85562863 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
85562781 ATAAATAATG
** ***
85562791 ATAATAAA-AATAATAGTAATGATAATGGTA
1 ATAATAAATAATAATAGTAACAATAATACAA
*
85562821 ATAATAAATAGTAATAGTAACAATAATACAA
1 ATAATAAATAATAATAGTAACAATAATACAA
85562852 ATAATAAATAAT
1 ATAATAAATAAT
85562864 CTAAAGTTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
30 8 0.23
31 27 0.77
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.29
Consensus pattern (31 bp):
ATAATAAATAATAATAGTAACAATAATACAA
Found at i:85562966 original size:2 final size:2
Alignment explanation
Indices: 85562959--85562988 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
85562949 AGTGTGCTAA
85562959 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85562989 TAAATTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85563052 original size:3 final size:3
Alignment explanation
Indices: 85563046--85563170 Score: 65
Period size: 3 Copynumber: 41.3 Consensus size: 3
85563036 AGAAGAAAAT
* * * *
85563046 ATA ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* * * * * * * *
85563095 ATA ATA AT- ATA TTA GATA GTA AAA AAA ATA ACA GTA ATA AAA ATG
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
85563140 ATA ATA GTG ATA TTA GTA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
85563171 CAGTAATTTA
Statistics
Matches: 88, Mismatches: 29, Indels: 10
0.69 0.23 0.08
Matches are distributed among these distances:
2 3 0.03
3 81 0.92
4 2 0.02
5 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:85563074 original size:14 final size:14
Alignment explanation
Indices: 85563043--85563083 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
85563033 AAAAGAAGAA
*
85563043 AATA-TAATAATAAT
1 AATAGTAATAAT-AC
85563057 AATAGTAATAATAC
1 AATAGTAATAATAC
85563071 AATAGTAATAATA
1 AATAGTAATAATA
85563084 ATAAAAAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (14 bp):
AATAGTAATAATAC
Found at i:85563082 original size:17 final size:17
Alignment explanation
Indices: 85563062--85563103 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
85563052 ATAATAATAG
*
85563062 TAATAATACAATA-GTAA
1 TAATAATA-AAAAGGTAA
85563079 TAATAATAAAAAGGTAA
1 TAATAATAAAAAGGTAA
85563096 TAATAATA
1 TAATAATA
85563104 TATTAGATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (17 bp):
TAATAATAAAAAGGTAA
Found at i:85563121 original size:31 final size:31
Alignment explanation
Indices: 85563043--85563100 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
85563033 AAAAGAAGAA
*
85563043 AATA-TAATAATAAT-AATA-GTAATAATAC
1 AATAGTAATAATAATAAAAAGGTAATAATAC
85563071 AATAGTAATAATAATAAAAAGGTAATAATA
1 AATAGTAATAATAATAAAAAGGTAATAATA
85563101 ATATATTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 4 0.15
29 10 0.38
30 3 0.12
31 9 0.35
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (31 bp):
AATAGTAATAATAATAAAAAGGTAATAATAC
Found at i:85568392 original size:3 final size:3
Alignment explanation
Indices: 85568386--85568601 Score: 99
Period size: 3 Copynumber: 73.3 Consensus size: 3
85568376 AATAGTTAAA
* * * * * * *
85568386 AAT AAT AAT AAT AAT AGT AAT AGT AAT TAC AAA AAT GAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
85568434 AA- AAT AA- GAT GAT AAT AAT AAT ATT AAT AAT AAT AA- AAGT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
* * * * ** *
85568476 AA- AAT AA- AAT AGT AAT AAC AGT AAA AAT AAT AAT AGC AAT AAT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
85568522 AAT AGT AAT AAC AGT AAT GAT AAC AAT AAT -AT AAAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * *
85568566 ATAT ATAT GAAA AAT AAT AAT AGT AA- AAA AAT AAT A
1 A-AT A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A
85568602 GAAGTAGTAA
Statistics
Matches: 155, Mismatches: 46, Indels: 24
0.69 0.20 0.11
Matches are distributed among these distances:
2 17 0.11
3 126 0.81
4 11 0.07
5 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:85568448 original size:22 final size:20
Alignment explanation
Indices: 85568403--85568456 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
85568393 ATAATAATAG
*
85568403 TAATAGTAATTACAAAAATGA
1 TAATAGTAA-TAAAAAAATGA
85568424 TAATAGTAATAAAATAAGATGA
1 TAATAGTAATAAAA-AA-ATGA
*
85568446 TAATAATAATA
1 TAATAGTAATA
85568457 TTAATAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 4 0.14
21 11 0.38
22 14 0.48
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (20 bp):
TAATAGTAATAAAAAAATGA
Found at i:85568449 original size:49 final size:49
Alignment explanation
Indices: 85568364--85568461 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 49
85568354 TAAGTAAAAA
* *
85568364 TACAAAAAAAATAATAGTTAAAAATAATAATAATAATAGTAATAGTAAT
1 TACAAAAAAAATAATAGTAAAAAATAATAATAATAATAATAATAGTAAT
** * * *
85568413 TACAAAAATGATAATAGTAATAAAATAA-GATGATAATAATAATATTAAT
1 TACAAAAAAAATAATAGTAA-AAAATAATAATAATAATAATAATAGTAAT
85568462 AATAATAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
49 34 0.83
50 7 0.17
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (49 bp):
TACAAAAAAAATAATAGTAAAAAATAATAATAATAATAATAATAGTAAT
Found at i:85568491 original size:24 final size:24
Alignment explanation
Indices: 85568453--85568618 Score: 81
Period size: 24 Copynumber: 6.6 Consensus size: 24
85568443 TGATAATAAT
* *
85568453 AATATTAATAATAATAAAAGTAAAA
1 AATAATAATAGTAATAAAAGT-AAA
*
85568478 AATAA-AATAGTAATAACAGTAAA
1 AATAATAATAGTAATAAAAGTAAA
* *
85568501 AATAATAATAGCAATAATAAG-AAT
1 AATAATAATAGTAATAA-AAGTAAA
* * *
85568525 AGTAATAACAGTAATGATAACAATAATATA
1 AATAATAATAGTAAT-A-AA-AGT-A-A-A
* *
85568555 AATAATAATA-TATATATATG-AAA
1 AATAATAATAGTA-ATAAAAGTAAA
*
85568578 AATAATAATAGTAA-AAAAATAATA
1 AATAATAATAGTAATAAAAGTAA-A
*
85568602 GAAGTAGTAATAGTAAT
1 -AA-TAATAATAGTAAT
85568619 GGTATTAGAA
Statistics
Matches: 105, Mismatches: 20, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
22 2 0.02
23 22 0.21
24 41 0.39
25 11 0.10
26 13 0.12
28 2 0.02
29 4 0.04
30 10 0.10
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (24 bp):
AATAATAATAGTAATAAAAGTAAA
Found at i:85568505 original size:39 final size:40
Alignment explanation
Indices: 85568416--85568613 Score: 138
Period size: 39 Copynumber: 4.9 Consensus size: 40
85568406 TAGTAATTAC
* * * *
85568416 AAAAATGATAATAGTAATAAAATAAGATGATAATAATAATATT
1 AAAAATAATAATAGTAA-AAAATAAGA--ATAGTAATAACAGT
* *
85568459 AATAATAATAAAAGTAAAAAATAA-AATAGTAATAACAGT
1 AAAAATAATAATAGTAAAAAATAAGAATAGTAATAACAGT
* *
85568498 AAAAATAATAATAG-CAATAATAAGAATAGTAATAACAGT
1 AAAAATAATAATAGTAAAAAATAAGAATAGTAATAACAGT
** * * * * *
85568537 AATGATAACAATAAT-ATAAATAATAATA-T-ATATATA-T
1 AAAAATAATAATAGTAAAAAATAAGAATAGTAATA-ACAGT
85568574 GAAAAATAATAATAGTAAAAAAATAATAGAAGTAGTAATA
1 -AAAAATAATAATAGT-AAAAAAT-A-AGAA-TAGTAATA
85568614 GTAATGGTAT
Statistics
Matches: 120, Mismatches: 24, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
37 4 0.03
38 21 0.17
39 58 0.48
40 5 0.04
41 2 0.02
42 10 0.08
43 16 0.13
44 1 0.01
45 3 0.03
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.27
Consensus pattern (40 bp):
AAAAATAATAATAGTAAAAAATAAGAATAGTAATAACAGT
Found at i:85568671 original size:15 final size:15
Alignment explanation
Indices: 85568388--85568602 Score: 109
Period size: 15 Copynumber: 15.0 Consensus size: 15
85568378 TAGTTAAAAA
85568388 TAATAATAATAATAG
1 TAATAATAATAATAG
*
85568403 TAATAGTAAT--TA-
1 TAATAATAATAATAG
* * *
85568415 CAAAAATGATAATAG
1 TAATAATAATAATAG
*
85568430 TAATAA-AATAAGA-
1 TAATAATAATAATAG
* *
85568443 TGATAATAATAATAT
1 TAATAATAATAATAG
*
85568458 TAATAATAATAAAAG
1 TAATAATAATAATAG
85568473 TAA-AA-AAT-A-A-
1 TAATAATAATAATAG
* *
85568483 -AATAGTAATAACAG
1 TAATAATAATAATAG
*
85568497 TAAAAATAATAATAG
1 TAATAATAATAATAG
* *
85568512 CAATAATAAGAATAG
1 TAATAATAATAATAG
* *
85568527 TAATAACAGTAAT-G
1 TAATAATAATAATAG
* *
85568541 ATAACAATAAT-ATAAA
1 -TAATAATAATAAT-AG
85568557 TAATAATATATATATA-
1 TAATAATA-ATA-ATAG
*
85568573 TGAAAAATAATAATAG
1 T-AATAATAATAATAG
*
85568589 TAA-AAAAATAATAG
1 TAATAATAATAATAG
85568603 AAGTAGTAAT
Statistics
Matches: 149, Mismatches: 32, Indels: 39
0.68 0.15 0.18
Matches are distributed among these distances:
9 2 0.01
10 1 0.01
11 4 0.03
12 8 0.05
13 11 0.07
14 28 0.19
15 79 0.53
16 7 0.05
17 7 0.05
18 2 0.01
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (15 bp):
TAATAATAATAATAG
Found at i:85570109 original size:44 final size:44
Alignment explanation
Indices: 85570044--85570196 Score: 139
Period size: 44 Copynumber: 3.5 Consensus size: 44
85570034 AATCCGACCT
* *
85570044 ACTGCAACTTCAGAGG-TATAGGACTTGTCACCTTAATCTGCTCC
1 ACTGCAACTTCAG-GGAGATAGGACTTGTCGCCTTAATCTGCTCC
* * * *
85570088 ACTGCAAGTTCAGGGAGATAGGA-TTAGTTGTCTTCAGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAGGACTT-GTCGCCTT-AATCTGCTCC
* * * * * **
85570133 GCTGCAACTTCAGGGAGATAAGACTTGTGGCTTTAATTTGCTTT
1 ACTGCAACTTCAGGGAGATAGGACTTGTCGCCTTAATCTGCTCC
*
85570177 ACTGCAACTTCAGGGGGATA
1 ACTGCAACTTCAGGGAGATA
85570197 AGATTTTCCA
Statistics
Matches: 87, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
43 4 0.05
44 47 0.54
45 34 0.39
46 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAGGACTTGTCGCCTTAATCTGCTCC
Found at i:85570484 original size:45 final size:44
Alignment explanation
Indices: 85570416--85570540 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 44
85570406 AGGACTCACC
* * * *
85570416 ATTTTAATCCGCTCCACTACAACTTCAAGGAGATAAGA-TTAGCT-
1 ATTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TA
* * *
85570460 CTCTTCAATCTGCTCCGCTGCAACTTTAGGGAGATAAGACTTGTA
1 AT-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
* *
85570505 ATTTCAACCTGTTCCACTGCAACTTCAGGGAGATAA
1 ATTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
85570541 AGTTTGCTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
44 32 0.48
45 32 0.48
46 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (44 bp):
ATTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
Found at i:85570647 original size:52 final size:52
Alignment explanation
Indices: 85570569--85570671 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
85570559 CTACTACAAC
85570569 TTTAGAGAGATAAGATCTGTTTATTTATAGCTTCAATATATTCCACTGCAAG
1 TTTAGAGAGATAAGATCTGTTTATTTATAGCTTCAATATATTCCACTGCAAG
*
85570621 TTTAGAGAGATAAGATCTGTTTATTTATAGCTTCAATCTATTCCACTGCAA
1 TTTAGAGAGATAAGATCTGTTTATTTATAGCTTCAATATATTCCACTGCAA
85570672 CTTCAGGGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (52 bp):
TTTAGAGAGATAAGATCTGTTTATTTATAGCTTCAATATATTCCACTGCAAG
Done.