Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 287 of 328
Found at i:85806539 original size:13 final size:13
Alignment explanation
Indices: 85806521--85806545 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85806511 GGGCCTACAT
85806521 GGGTAAACCACAC
1 GGGTAAACCACAC
85806534 GGGTAAACCACA
1 GGGTAAACCACA
85806546 TGGGCGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.24, T:0.08
Consensus pattern (13 bp):
GGGTAAACCACAC
Found at i:85812666 original size:31 final size:29
Alignment explanation
Indices: 85812640--85812696 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
85812630 TACTTTATCA
*
85812640 AAATT-TTCAATATGGTACTTATACTTTT
1 AAATTGTTCAATATGGTACATATACTTTT
* *
85812668 AATTTGTTTAATATGGTACATATACTTTT
1 AAATTGTTCAATATGGTACATATACTTTT
85812697 CTATTTATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.51
Consensus pattern (29 bp):
AAATTGTTCAATATGGTACATATACTTTT
Found at i:85813882 original size:22 final size:21
Alignment explanation
Indices: 85813838--85813879 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
85813828 ATATGCGTAA
85813838 AAATATTGGTTTTTTTATTTTT
1 AAATATT-GTTTTTTTATTTTT
85813860 AAATATT-TTTTTTTATTTTT
1 AAATATTGTTTTTTTATTTTT
85813880 TTACTTTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 13 0.65
22 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (21 bp):
AAATATTGTTTTTTTATTTTT
Found at i:85817611 original size:18 final size:19
Alignment explanation
Indices: 85817573--85817613 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
85817563 TTGGTTCATG
85817573 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
85817592 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
85817610 TTTC
1 TTTC
85817614 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:85818208 original size:24 final size:25
Alignment explanation
Indices: 85818156--85818217 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
85818146 CACATATATC
*
85818156 ATATAAATTCAATTCAATTCAATAA
1 ATATAAATTCAATTAAATTCAATAA
* * *
85818181 ATATAATTTCAA-TAAATTCATTAT
1 ATATAAATTCAATTAAATTCAATAA
85818205 ATATCAAA-TCAAT
1 ATAT-AAATTCAAT
85818218 CCATTTCAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
24 17 0.57
25 13 0.43
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (25 bp):
ATATAAATTCAATTAAATTCAATAA
Found at i:85818991 original size:18 final size:18
Alignment explanation
Indices: 85818970--85819006 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
85818960 AATAATAACT
*
85818970 ATAATAAAAATTTATTTA
1 ATAACAAAAATTTATTTA
*
85818988 ATAACAAATATTTATTTA
1 ATAACAAAAATTTATTTA
85819006 A
1 A
85819007 CACTTATACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
ATAACAAAAATTTATTTA
Found at i:85819057 original size:2 final size:2
Alignment explanation
Indices: 85819050--85819077 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
85819040 CCTTTTCTTT
85819050 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
85819078 ATAACTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:85819091 original size:11 final size:12
Alignment explanation
Indices: 85819072--85819105 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
85819062 TATATATATA
85819072 TATATAATAACT
1 TATATAATAACT
85819084 TA-ATAATATACT
1 TATATAATA-ACT
85819096 TATATAATAA
1 TATATAATAA
85819106 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:85819149 original size:23 final size:22
Alignment explanation
Indices: 85819119--85819163 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
85819109 AACATACATG
85819119 TAATTTACAAATGT-ATGTATAC
1 TAATTTACAAATGTCAT-TATAC
*
85819141 TAATATTACACATGTCATTATAC
1 TAAT-TTACAAATGTCATTATAC
85819164 ATACCATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 14 0.70
24 2 0.10
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (22 bp):
TAATTTACAAATGTCATTATAC
Found at i:85819522 original size:3 final size:3
Alignment explanation
Indices: 85819516--85819555 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
85819506 ATAGCTATTA
85819516 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
85819556 GTTTAATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:85820584 original size:27 final size:27
Alignment explanation
Indices: 85820554--85820608 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
85820544 AACTTCTTAA
85820554 ACTCGTTCTAGAATTAGAATGTAAACC
1 ACTCGTTCTAGAATTAGAATGTAAACC
85820581 ACTCGTTCTAGAATTAGAATGTAAACC
1 ACTCGTTCTAGAATTAGAATGTAAACC
85820608 A
1 A
85820609 TGTATCTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (27 bp):
ACTCGTTCTAGAATTAGAATGTAAACC
Found at i:85826020 original size:42 final size:42
Alignment explanation
Indices: 85825932--85826022 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
85825922 TGGCCTCATC
* * * *
85825932 GACCACATGCCCATGTTCTATCATACTTCCTCCCATACGAGT
1 GACCACATGCCCATGTTCTATCATACTGCCTACCACACGAGA
** *
85825974 GACCACATGCCGGTGTTCTATCATA-TGGCCTACCACACGGGA
1 GACCACATGCCCATGTTCTATCATACT-GCCTACCACACGAGA
85826016 GACCACA
1 GACCACA
85826023 CGTCCGTGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 40 0.98
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (42 bp):
GACCACATGCCCATGTTCTATCATACTGCCTACCACACGAGA
Found at i:85843907 original size:26 final size:26
Alignment explanation
Indices: 85843878--85843959 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
85843868 TGATACAAAT
85843878 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85843904 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85843930 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85843956 TGAT
1 TGAT
85843960 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85845464 original size:26 final size:26
Alignment explanation
Indices: 85845435--85845487 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
85845425 TTTACAGTTT
85845435 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
85845461 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
85845487 T
1 T
85845488 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:85852920 original size:29 final size:30
Alignment explanation
Indices: 85852888--85852952 Score: 69
Period size: 31 Copynumber: 2.2 Consensus size: 30
85852878 AAATTTTATG
**
85852888 TATAAAATTGTACA-AAATCAAAATTCATA
1 TATAAAATTAAACATAAATCAAAATTCATA
* * *
85852917 TATATAATTAAACATTAAATCAAAATTTATG
1 TATAAAATTAAACA-TAAATCAAAATTCATA
85852948 TATAA
1 TATAA
85852953 TTTTAAAATT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
29 11 0.39
31 17 0.61
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (30 bp):
TATAAAATTAAACATAAATCAAAATTCATA
Found at i:85854783 original size:105 final size:105
Alignment explanation
Indices: 85854599--85854804 Score: 304
Period size: 105 Copynumber: 2.0 Consensus size: 105
85854589 GAACTTTTTT
** * * *
85854599 TTTATCCAAGTTAGTCCTTGGACTTGGCAATAAACTAAGAAATTATTTATCCAATCAAAATAGTC
1 TTTATCCAAGTTAGTCCTTAAACTTGACAATAAACTAAAAAATTATTTATCCAATCAAAATAATC
* * * *
85854664 GAAATGATAGCATTTTAAAAATGGATCAAATGAAAATAAA
66 AAAATGATAACATTTTAAAAATGAAACAAATGAAAATAAA
**
85854704 TTTATCCAAGTTAGTTTTTAAACTTGACAATAAACTAAAAAATTATTTATCCAATCAAAATAATC
1 TTTATCCAAGTTAGTCCTTAAACTTGACAATAAACTAAAAAATTATTTATCCAATCAAAATAATC
*
85854769 AAAATGCTAACATTTTAAAAATGAAACAAATGAAAA
66 AAAATGATAACATTTTAAAAATGAAACAAATGAAAA
85854805 CAATTTTAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
105 89 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (105 bp):
TTTATCCAAGTTAGTCCTTAAACTTGACAATAAACTAAAAAATTATTTATCCAATCAAAATAATC
AAAATGATAACATTTTAAAAATGAAACAAATGAAAATAAA
Found at i:85858646 original size:22 final size:22
Alignment explanation
Indices: 85858599--85858646 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
85858589 TAATAACAAC
* *
85858599 AAAATAGTAGCAATATAATAGT
1 AAAATAGTAACAAAATAATAGT
*
85858621 AAAATGGTAACAAAATAGATAG-
1 AAAATAGTAACAAAATA-ATAGT
85858643 AAAA
1 AAAA
85858647 CAACAAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.60, C:0.04, G:0.15, T:0.21
Consensus pattern (22 bp):
AAAATAGTAACAAAATAATAGT
Found at i:85861681 original size:24 final size:25
Alignment explanation
Indices: 85861648--85861703 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
85861638 TCTCATTTAA
*
85861648 TTAACAAATATA-TATTTTA-AAAAT
1 TTAA-AAATATATTATTTAATAAAAT
85861672 TATAAAAATATATTATTTAATAAAAT
1 T-TAAAAATATATTATTTAATAAAAT
85861698 TTAAAA
1 TTAAAA
85861704 GTAAACACGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 8 0.29
25 14 0.50
26 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (25 bp):
TTAAAAATATATTATTTAATAAAAT
Found at i:85862256 original size:7 final size:7
Alignment explanation
Indices: 85862213--85862262 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
85862203 TTCCAAACTT
85862213 ATTTT-A
1 ATTTTCA
*
85862219 ATCTTCAA
1 ATTTTC-A
85862227 ATTTT-A
1 ATTTTCA
85862233 ATTTTCA
1 ATTTTCA
*
85862240 TTTTTCA
1 ATTTTCA
*
85862247 ATTTTGA
1 ATTTTCA
85862254 ATTTTCA
1 ATTTTCA
85862261 AT
1 AT
85862263 CCTCAATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
6 10 0.29
7 20 0.57
8 5 0.14
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.58
Consensus pattern (7 bp):
ATTTTCA
Found at i:85862268 original size:21 final size:20
Alignment explanation
Indices: 85862213--85862270 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
85862203 TTCCAAACTT
85862213 ATTTT-AATCTTCAAATTTTA
1 ATTTTCAATCTTC-AATTTTA
* *
85862233 ATTTTCATTTTTCAATTTTGA
1 ATTTTCAATCTTCAATTTT-A
*
85862254 ATTTTCAATCCTCAATT
1 ATTTTCAATCTTCAATT
85862271 ATTTTTTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 11 0.35
21 20 0.65
ACGTcount: A:0.29, C:0.14, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTTTCAATCTTCAATTTTA
Found at i:85863939 original size:23 final size:23
Alignment explanation
Indices: 85863838--85863964 Score: 107
Period size: 23 Copynumber: 5.4 Consensus size: 23
85863828 GAGCCATGAT
**
85863838 CAGTAAGCTCCTCCTGAGCTGAAAAA
1 CAGTAAGCT-CTATTGAGCTG--AAA
* *
85863864 TAGTAAGCTCTATTGAGCTAAAA
1 CAGTAAGCTCTATTGAGCTGAAA
** *
85863887 TGGTAAGCTCTATCGAGCTG-AA
1 CAGTAAGCTCTATTGAGCTGAAA
*
85863909 CAGGAAGCTC-ATTTGAGCTGAAA
1 CAGTAAGCTCTA-TTGAGCTGAAA
*
85863932 CAGTAAGCTC-ATTTGAGTTGAAA
1 CAGTAAGCTCTA-TTGAGCTGAAA
85863955 CAGTAAGCTC
1 CAGTAAGCTC
85863965 CTACGAGCTA
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.01
22 16 0.19
23 53 0.62
25 8 0.09
26 8 0.09
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (23 bp):
CAGTAAGCTCTATTGAGCTGAAA
Found at i:85864337 original size:16 final size:15
Alignment explanation
Indices: 85864312--85864346 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
85864302 CTATATTTTA
85864312 TCAAATTCAATACAT
1 TCAAATTCAATACAT
*
85864327 TCAACATTCAATATAT
1 TCAA-ATTCAATACAT
85864343 TCAA
1 TCAA
85864347 TTTAATCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (15 bp):
TCAAATTCAATACAT
Found at i:85865385 original size:25 final size:24
Alignment explanation
Indices: 85865329--85865393 Score: 64
Period size: 25 Copynumber: 2.8 Consensus size: 24
85865319 GCAAGAAAAT
*
85865329 TTATTAAATTATT-T-TCATTTAA
1 TTATTAAATTATTATGTTATTTAA
*
85865351 ATACTT-AATTATTATGTTATTTAGA
1 TTA-TTAAATTATTATGTTATTTA-A
*
85865376 TTATTAAATTTTTATGTT
1 TTATTAAATTATTATGTT
85865394 TATATACTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
22 9 0.26
23 3 0.09
24 8 0.24
25 14 0.41
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (24 bp):
TTATTAAATTATTATGTTATTTAA
Found at i:85866687 original size:2 final size:2
Alignment explanation
Indices: 85866680--85866709 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
85866670 TATTCGGTTA
85866680 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85866710 TATTTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85870514 original size:22 final size:24
Alignment explanation
Indices: 85870488--85870535 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
85870478 TCAAAACTTC
*
85870488 AAATA-TATTTTATTAT-TAAATT
1 AAATATTATTTTATTATAAAAATT
*
85870510 AAATATTATTTTTTTATAAAAATT
1 AAATATTATTTTATTATAAAAATT
85870534 AA
1 AA
85870536 TTGTATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 5 0.23
23 10 0.45
24 7 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
AAATATTATTTTATTATAAAAATT
Found at i:85871995 original size:7 final size:7
Alignment explanation
Indices: 85871967--85872010 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
85871957 TTCAATCTTA
85871967 TTTCAAT
1 TTTCAAT
*
85871974 CTTCAAAT
1 TTTC-AAT
85871982 TTT-AAT
1 TTTCAAT
85871988 TTTCAAT
1 TTTCAAT
85871995 TTTCAAT
1 TTTCAAT
85872002 TTTCAAT
1 TTTCAAT
85872009 TT
1 TT
85872011 CGAAATTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 6 0.18
7 22 0.67
8 5 0.15
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCAAT
Found at i:85872019 original size:21 final size:20
Alignment explanation
Indices: 85871979--85872022 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
85871969 TCAATCTTCA
*
85871979 AATTTTAATTTTCAATTTTC
1 AATTTTAATTTTCAAATTTC
85871999 AATTTTCAA-TTTCGAAATTTC
1 AATTTT-AATTTTC-AAATTTC
85872020 AAT
1 AAT
85872023 CCTCAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.52
Consensus pattern (20 bp):
AATTTTAATTTTCAAATTTC
Found at i:85876809 original size:32 final size:34
Alignment explanation
Indices: 85876773--85876843 Score: 85
Period size: 31 Copynumber: 2.2 Consensus size: 34
85876763 TCGAAAAAAG
85876773 TTAAAATCGAAAAGTTTCATCG-TCTTTTT-TTT
1 TTAAAATCGAAAAGTTTCATCGTTCTTTTTCTTT
** * *
85876805 TT-AAATCGAAGGGTTTTATCGTTTTTTTTCTTT
1 TTAAAATCGAAAAGTTTCATCGTTCTTTTTCTTT
85876838 TTAAAA
1 TTAAAA
85876844 CTCAGCTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
31 16 0.50
32 8 0.25
33 5 0.16
34 3 0.09
ACGTcount: A:0.27, C:0.10, G:0.11, T:0.52
Consensus pattern (34 bp):
TTAAAATCGAAAAGTTTCATCGTTCTTTTTCTTT
Found at i:85879390 original size:17 final size:17
Alignment explanation
Indices: 85879301--85879479 Score: 141
Period size: 17 Copynumber: 10.3 Consensus size: 17
85879291 AAGCTCACTC
*
85879301 CTTTGGTGAGCTTGCA-
1 CTTTGGTGAGCTCGCAT
* *
85879317 CATTTGGTGAGCTTGCAA
1 C-TTTGGTGAGCTCGCAT
85879335 CTTTGGTGAGCTCGCA-
1 CTTTGGTGAGCTCGCAT
* * *
85879351 CATTTGATGACCTCACAGT
1 C-TTTGGTGAGCTCGCA-T
85879370 -TTTGGTGAGCTCGCAT
1 CTTTGGTGAGCTCGCAT
*
85879386 CTTT-GTTAGGCTCGCAT
1 CTTTGGTGA-GCTCGCAT
* *
85879403 CTTTGATTGAGCTCGTAT
1 CTTTG-GTGAGCTCGCAT
* *
85879421 ATTTGGACGAGCTCGCAT
1 CTTTGG-TGAGCTCGCAT
* *
85879439 CTTTGGATGAGTTCGTAT
1 CTTTGG-TGAGCTCGCAT
85879457 CTTTGGGTGAGCTCGCAT
1 CTTT-GGTGAGCTCGCAT
85879475 CTTTG
1 CTTTG
85879480 TGATCTATGT
Statistics
Matches: 131, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
16 6 0.05
17 69 0.53
18 52 0.40
19 4 0.03
ACGTcount: A:0.16, C:0.20, G:0.27, T:0.37
Consensus pattern (17 bp):
CTTTGGTGAGCTCGCAT
Found at i:85879432 original size:18 final size:18
Alignment explanation
Indices: 85879411--85879479 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
85879401 ATCTTTGATT
*
85879411 GAGCTCGTATATTTGGAC
1 GAGCTCGTATCTTTGGAC
* *
85879429 GAGCTCGCATCTTTGGAT
1 GAGCTCGTATCTTTGGAC
* **
85879447 GAGTTCGTATCTTTGGGT
1 GAGCTCGTATCTTTGGAC
*
85879465 GAGCTCGCATCTTTG
1 GAGCTCGTATCTTTG
85879480 TGATCTATGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.16, C:0.19, G:0.29, T:0.36
Consensus pattern (18 bp):
GAGCTCGTATCTTTGGAC
Found at i:85879438 original size:36 final size:35
Alignment explanation
Indices: 85879395--85879479 Score: 116
Period size: 36 Copynumber: 2.4 Consensus size: 35
85879385 TCTTTGTTAG
85879395 GCTCGCATCTTTGATTGAGCTCGTATATTTGGACGA
1 GCTCGCATCTTTGA-TGAGCTCGTATATTTGGACGA
* * **
85879431 GCTCGCATCTTTGGATGAGTTCGTATCTTTGGGTGA
1 GCTCGCATCTTT-GATGAGCTCGTATATTTGGACGA
85879467 GCTCGCATCTTTG
1 GCTCGCATCTTTG
85879480 TGATCTATGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
35 1 0.02
36 41 0.93
37 2 0.05
ACGTcount: A:0.15, C:0.20, G:0.27, T:0.38
Consensus pattern (35 bp):
GCTCGCATCTTTGATGAGCTCGTATATTTGGACGA
Found at i:85881840 original size:21 final size:21
Alignment explanation
Indices: 85881816--85881871 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
85881806 CACCATTGTT
85881816 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACTGCTACAGTA
* *
85881837 TCTAATCTCACCGTTACAGTA
1 TCTAATCTCACTGCTACAGTA
*
85881858 ACTAATCTCACTGC
1 TCTAATCTCACTGC
85881872 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (21 bp):
TCTAATCTCACTGCTACAGTA
Found at i:85897374 original size:3 final size:3
Alignment explanation
Indices: 85897361--85897410 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
85897351 ATTTTTTCAA
*
85897361 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATAT TAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
*
85897406 GAT AA
1 AAT AA
85897411 ATTTGAATCA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:85897516 original size:16 final size:16
Alignment explanation
Indices: 85897490--85897527 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
85897480 TCTTCAGATT
85897490 TTTTAAAAAA-ATTATAA
1 TTTTAAAAAATA-TA-AA
85897507 TTTTAAAAAATATAAA
1 TTTTAAAAAATATAAA
85897523 TTTTA
1 TTTTA
85897528 GAATTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 12 0.60
18 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTTAAAAAATATAAA
Found at i:85897552 original size:19 final size:19
Alignment explanation
Indices: 85897517--85897575 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
85897507 TTTTAAAAAA
*
85897517 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
85897535 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
85897554 TGA-AAATTATTTTGAATATTT
1 T-ATAAA-TATTTTGAAT-TTT
85897575 T
1 T
85897576 TGTAATTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 7 0.19
19 14 0.39
20 11 0.31
21 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:85897554 original size:20 final size:20
Alignment explanation
Indices: 85897517--85897576 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
85897507 TTTTAAAAAA
*
85897517 TATAAAT-TTTAGAA-TTTT
1 TATAAATATTTTGAATTTTT
85897535 TATAAATATTTTGAATTTTT
1 TATAAATATTTTGAATTTTT
*
85897555 GA-AAATTATTTTGAATATTTT
1 TATAAA-TATTTTGAAT-TTTT
85897576 T
1 T
85897577 GTAATTTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 7 0.20
19 9 0.26
20 15 0.43
21 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
TATAAATATTTTGAATTTTT
Found at i:85909881 original size:2 final size:2
Alignment explanation
Indices: 85909868--85909917 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
85909858 TTATTTTAAA
*
85909868 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85909910 AT AT AT AT
1 AT AT AT AT
85909918 TAGTTTTTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:85916493 original size:36 final size:33
Alignment explanation
Indices: 85916433--85916498 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
85916423 ACATATGTAA
*
85916433 TAATGTGTCATATTATAGCAAGGATAAAATATG
1 TAATGTGTCATATTATAGAAAGGATAAAATATG
*
85916466 TAATGTGTCATGTTATAGTAAGGAGGATAAAAT
1 TAATGTGTCATATTATAG-AA--AGGATAAAAT
85916499 GTGAACTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 17 0.61
34 1 0.04
36 10 0.36
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (33 bp):
TAATGTGTCATATTATAGAAAGGATAAAATATG
Found at i:85925306 original size:50 final size:50
Alignment explanation
Indices: 85925231--85925425 Score: 291
Period size: 50 Copynumber: 3.9 Consensus size: 50
85925221 AAGGGTAAGA
* * *
85925231 TGCCGATGTCATGTCCCAGACATGGTCTTACACCGGCTCTCATATATTGG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGG
*
85925281 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGG
* *
85925331 TGTCGATGCCATGTACCAGACATGGTCTTACACTGGCTCTCATATATCGG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGG
* * * * *
85925381 TGCTGATGCCATATCCCAAACATGGTCTTACATTGGCTCACATAT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT
85925426 TGCCCTAGTA
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 131 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (50 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGG
Found at i:85927496 original size:54 final size:54
Alignment explanation
Indices: 85927434--85927541 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
85927424 GAATAGGGTA
85927434 AGATAGGAAATTCTTATGAACTTACTGAGCTTTCCGAGCTTAATGTGTTAGTGG
1 AGATAGGAAATTCTTATGAACTTACTGAGCTTTCCGAGCTTAATGTGTTAGTGG
85927488 AGATAGGAAATTCTTATGAACTTACTGAGCTTTCCGAGCTTAATGTGTTAGTGG
1 AGATAGGAAATTCTTATGAACTTACTGAGCTTTCCGAGCTTAATGTGTTAGTGG
85927542 TTTAAACACG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (54 bp):
AGATAGGAAATTCTTATGAACTTACTGAGCTTTCCGAGCTTAATGTGTTAGTGG
Found at i:85927644 original size:12 final size:12
Alignment explanation
Indices: 85927629--85927653 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85927619 GTTGTATAAG
85927629 TAGTTATTTATA
1 TAGTTATTTATA
85927641 TAGTTATTTATA
1 TAGTTATTTATA
85927653 T
1 T
85927654 TTGCTTGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (12 bp):
TAGTTATTTATA
Found at i:85929448 original size:29 final size:29
Alignment explanation
Indices: 85929414--85929487 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
85929404 TAATCAACCA
*
85929414 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
*
85929443 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAACT
85929472 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
85929488 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 3 0.07
29 39 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:85930146 original size:8 final size:8
Alignment explanation
Indices: 85930133--85930162 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
85930123 GCCGAATATG
85930133 TATATCTA
1 TATATCTA
85930141 TATATCTA
1 TATATCTA
*
85930149 TATATATA
1 TATATCTA
85930157 TATATC
1 TATATC
85930163 AACTATACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (8 bp):
TATATCTA
Found at i:85935116 original size:62 final size:62
Alignment explanation
Indices: 85935040--85935194 Score: 231
Period size: 64 Copynumber: 2.5 Consensus size: 62
85935030 AGCTTATGTG
*
85935040 ATTTATATAACAAAATTTATATTACAAAGTTTGTTCCAAATT-TTAATGTTGTAATGTATTTA
1 ATTTATATAACAAAATTTATATTACAAAATTTGTT-CAAATTATTAATGTTGTAATGTATTTA
* *
85935102 ATTTATATAACAAAATTTATATTACAAAATTTGTTCTAATTAGATTGATGTTGTAATGTATTTA
1 ATTTATATAACAAAATTTATATTACAAAATTTGTTCAAATT--ATTAATGTTGTAATGTATTTA
* *
85935166 ACTTATATAACAAAGTTTATATTACAAAA
1 ATTTATATAACAAAATTTATATTACAAAA
85935195 CTAAGTTTGT
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
61 5 0.06
62 34 0.40
64 46 0.54
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (62 bp):
ATTTATATAACAAAATTTATATTACAAAATTTGTTCAAATTATTAATGTTGTAATGTATTTA
Found at i:85935120 original size:14 final size:14
Alignment explanation
Indices: 85935101--85935133 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
85935091 TAATGTATTT
85935101 AATTTATATAACAA
1 AATTTATATAACAA
*
85935115 AATTTATATTACAA
1 AATTTATATAACAA
85935129 AATTT
1 AATTT
85935134 GTTCTAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTTATATAACAA
Found at i:85938767 original size:64 final size:64
Alignment explanation
Indices: 85938699--85938904 Score: 150
Period size: 64 Copynumber: 3.1 Consensus size: 64
85938689 CCAGAGCCCT
85938699 TTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTA
1 TTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTA
* * *** * ** *
85938763 TTTCAAAATAC-ATACAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGTACTGG
1 TTTCAGATTACAATA-AAC-T--G-GGCCTTA-GC---CCCTTATTCAGATAACA---GTA-TGG
* * *
85938825 GCCAGAGCCCT-
53 CCCATAGGCCTA
*
85938836 TTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCA
1 TTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTA
85938900 TTTCA
1 TTTCA
85938905 AAATACATGC
Statistics
Matches: 100, Mismatches: 25, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 13 0.13
64 20 0.20
65 4 0.04
67 10 0.10
68 5 0.05
69 5 0.05
70 10 0.10
72 4 0.04
73 15 0.15
74 14 0.14
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (64 bp):
TTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTA
Found at i:85938906 original size:137 final size:137
Alignment explanation
Indices: 85938660--85938946 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
85938650 CATTGGGCCT
**
85938660 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
85938725 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTATTTCAAAATACATACAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
85938790 CATATGC
131 CATATGC
85938797 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
85938862 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
85938927 CATATGC
131 CATATGC
85938934 AAGCCCATTTGGG
1 AAGCCCATTTGGG
85938947 GAGACTACTC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
CATATGC
Found at i:85939165 original size:21 final size:21
Alignment explanation
Indices: 85939141--85939180 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
85939131 CCAGTCCCAT
85939141 GCAT-CAGATAATAACAACATG
1 GCATGCAG-TAATAACAACATG
85939162 GCATGCAGTAATAACAACA
1 GCATGCAGTAATAACAACA
85939181 ATCAAACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.17
Consensus pattern (21 bp):
GCATGCAGTAATAACAACATG
Found at i:85939238 original size:26 final size:26
Alignment explanation
Indices: 85939192--85939244 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
85939182 TCAAACATGC
*
85939192 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
85939218 ATTTTGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
85939244 A
1 A
85939245 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:85940754 original size:26 final size:26
Alignment explanation
Indices: 85940724--85940805 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
85940714 TGAAATTCCC
85940724 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85940750 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85940776 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85940802 ATCA
1 ATCA
85940806 ATTTGTATTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85945908 original size:64 final size:64
Alignment explanation
Indices: 85945835--85946045 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
85945825 CTGGGCCAGA
*
85945835 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
85945899 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
85945961 ACTGGGCCAGA-
54 A-TGGCCCATAG
* *
85945972 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCTATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
85946036 GCCCATTTCA
1 GCCCATTTCA
85946046 AAATACATGC
Statistics
Matches: 102, Mismatches: 28, Indels: 34
0.62 0.17 0.21
Matches are distributed among these distances:
63 8 0.08
64 25 0.25
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:85945970 original size:137 final size:137
Alignment explanation
Indices: 85945801--85946060 Score: 493
Period size: 137 Copynumber: 1.9 Consensus size: 137
85945791 CTATGGGCCT
85945801 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85945866 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85945931 CATATGC
131 CATATGC
**
85945938 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
85946003 AGCCCCTTATTCAGATAACAGTATGGCCTATAGGCCCATTTCAAAATACATGCAACAT
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACAT
85946061 GCAAGCCCAT
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 120 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:85947910 original size:25 final size:25
Alignment explanation
Indices: 85947845--85947948 Score: 176
Period size: 25 Copynumber: 4.2 Consensus size: 25
85947835 CATGAAATTC
85947845 ATCAT-GAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
85947870 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
85947896 ATCAT-GAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
85947920 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
85947945 ATCA
1 ATCA
85947949 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
24 10 0.13
25 42 0.55
26 25 0.32
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:85953097 original size:64 final size:64
Alignment explanation
Indices: 85953029--85953235 Score: 161
Period size: 64 Copynumber: 3.1 Consensus size: 64
85953019 CCCTTTTTAG
85953029 AATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAA
1 AATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAA
* *** * * * *
85953093 AATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTAGGTAACAGTGGTACTGGGCCATA
1 AATACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GTA-TGGCCCATA
* *
85953155 -GCCCTTTTCAG
53 GGCCCATTTCAA
* *
85953166 ATTACAATAAACTGGGCCTTAGCCCATTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAA
1 AATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAA
85953230 AATACA
1 AATACA
85953236 TGCAACATTA
Statistics
Matches: 103, Mismatches: 23, Indels: 34
0.64 0.14 0.21
Matches are distributed among these distances:
63 10 0.10
64 22 0.21
65 4 0.04
66 1 0.01
67 12 0.12
68 5 0.05
69 5 0.05
70 12 0.12
71 1 0.01
72 5 0.05
73 16 0.16
74 10 0.10
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (64 bp):
AATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAA
Found at i:85953407 original size:137 final size:137
Alignment explanation
Indices: 85952984--85953404 Score: 752
Period size: 137 Copynumber: 3.1 Consensus size: 137
85952974 TATTGGGCCT
* * * *
85952984 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTTAGAATACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
85953049 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85953114 CATATGC
131 CATATGC
*
85953121 AAGCCCATTTAGGTAACAGTGGTACTGGGCCATAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
85953186 AGCCCATTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATTAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85953251 CATATGC
131 CATATGC
*
85953258 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
85953323 AGCCCCTTATTCAGATAACAGTATGACCAATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
85953388 CATATGC
131 CATATGC
85953395 AAGCCCATTT
1 AAGCCCATTT
85953405 GGGGAGACTA
Statistics
Matches: 272, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 272 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTAGGTAACAGTGGTACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:85953701 original size:26 final size:26
Alignment explanation
Indices: 85953655--85953707 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
85953645 TCAAACATGC
*
85953655 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
85953681 ATTTTGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
85953707 A
1 A
85953708 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:85955053 original size:26 final size:26
Alignment explanation
Indices: 85955023--85955130 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
85955013 TGAAATTCCC
*
85955023 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85955049 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85955075 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85955101 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85955127 ATCA
1 ATCA
85955131 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85955840 original size:15 final size:14
Alignment explanation
Indices: 85955802--85955843 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
85955792 CTCCTTCTTC
*
85955802 TTCTTCTTCTTTTC-
1 TTCTT-TTCTTCTCA
85955816 TTCTTTTCTTCTCA
1 TTCTTTTCTTCTCA
85955830 TTCTCTTTCTTCTC
1 TTCT-TTTCTTCTC
85955844 TTTCACTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 7 0.28
14 9 0.36
15 9 0.36
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (14 bp):
TTCTTTTCTTCTCA
Found at i:85955842 original size:3 final size:3
Alignment explanation
Indices: 85955795--85955827 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
85955785 CCCGCCCCTC
85955795 CTT CTT CTT CTT CTT CTT -TT CTT CTT -TT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
85955828 CATTCTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
CTT
Found at i:85955847 original size:9 final size:8
Alignment explanation
Indices: 85955796--85955827 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
85955786 CCGCCCCTCC
85955796 TTCTTCTT
1 TTCTTCTT
85955804 CTTCTTCTT
1 -TTCTTCTT
85955813 TTCTTCTT
1 TTCTTCTT
85955821 TTCTTCT
1 TTCTTCT
85955828 CATTCTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (8 bp):
TTCTTCTT
Found at i:85955852 original size:23 final size:22
Alignment explanation
Indices: 85955808--85955852 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
85955798 CTTCTTCTTC
*
85955808 TTCTTTTCTTCTTTTCTTCTCA
1 TTCTTTTCTTCTTTTCTACTCA
85955830 TTCTCTTTCTTCTCTTTC-ACTCA
1 TTCT-TTTCTTCT-TTTCTACTCA
85955853 CCAGTCGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 12 0.60
24 4 0.20
ACGTcount: A:0.07, C:0.31, G:0.00, T:0.62
Consensus pattern (22 bp):
TTCTTTTCTTCTTTTCTACTCA
Found at i:85957968 original size:2 final size:2
Alignment explanation
Indices: 85957961--85957997 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
85957951 TTTACAAAAC
*
85957961 AT AT AT AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
85957998 AATAGATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:85958289 original size:17 final size:17
Alignment explanation
Indices: 85958269--85958301 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
85958259 TAGATTAATG
*
85958269 ATACATATAGATAATAC
1 ATACATAAAGATAATAC
85958286 ATACATAAAGATAATA
1 ATACATAAAGATAATA
85958302 ATATATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.27
Consensus pattern (17 bp):
ATACATAAAGATAATAC
Found at i:85958384 original size:25 final size:24
Alignment explanation
Indices: 85958356--85958417 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
85958346 GGATCCTTAA
85958356 AGAAACAAAT-TATATAAGTAAATTT
1 AGAAA-AAATATATATAA-TAAATTT
*
85958381 AGAAGAAAATATATATAATAGATTT
1 AGAA-AAAATATATATAATAAATTT
*
85958406 AAAAAGAAATAT
1 AGAAA-AAATAT
85958418 TTACATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 1 0.03
25 23 0.72
26 8 0.25
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.29
Consensus pattern (24 bp):
AGAAAAAATATATATAATAAATTT
Found at i:85958412 original size:26 final size:25
Alignment explanation
Indices: 85958362--85958414 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
85958352 TTAAAGAAAC
*
85958362 AAATTATATAAGTAAATTTAGAAGA
1 AAATTATATAAGTAAATTTAAAAGA
*
85958387 AAATATATATAA-TAGATTTAAAAAGA
1 AAAT-TATATAAGTAAATTT-AAAAGA
85958413 AA
1 AA
85958415 TATTTACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (25 bp):
AAATTATATAAGTAAATTTAAAAGA
Found at i:85960458 original size:176 final size:173
Alignment explanation
Indices: 85960276--85960764 Score: 626
Period size: 176 Copynumber: 2.8 Consensus size: 173
85960266 TCAGTCCACG
*
85960276 TTCTTGCTACCTCAGGAAGATAAGACCAATATCTTCAACCTGCTCTCTTACTACCTCAGAGAGAT
1 TTCTTGCTACCTCAGGAAGATAAGACC-AT-TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAT
* *
85960341 AAGGCTAGTGGC-AAAATCTGCTCCATTGCCGATATATGAAGATAAGATTCACCATCTTTGATCT
64 AAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATATATG-AGATAAGATTC-CCATCTTCGATCT
*
85960405 ACTCCACTACTGCTTAGGGAGATAAGATCTTCAATATTCAATCTGCT
127 ACTCCACTACTGCTTAAGGAGATAAGATCTTCAATATTCAATCTGCT
* * * * *
85960452 TTCTTGCTGCCTCA-GATTGATAAGACTTATTCTTTAACCTGCTCTCTTGCTACCTTAGAGAGAT
1 TTCTTGCTACCTCAGGA-AGATAAGAC-CATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGAT
* * * * *
85960516 AAGGC-CGATGGCTTAGATCTTCTCCATTACTGATGCATA-GAGATAAGATTCCCTATCTTCGAT
64 AAGGCTAG-TGGCTTAAATCTGCTCCATTGCCGAT--ATATGAGATAAGATTCCC-ATCTTCGAT
* **
85960579 CTACTCCACTACTGCTTAAGGAGATAATATCTTCAATATTCCGTCTGCT
125 CTACTCCACTACTGCTTAAGGAGATAAGATCTTCAATATTCAATCTGCT
*
85960628 TTCTTGCTACCTCAGAAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATA
1 TTCTTGCTACCTCAGGAAGATAAGAC-CATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATA
* * * * *
85960693 AGGCTGGTGGCTTAAATCTGCTTCATTGCCAATACATGGAGATAAGATTCGCCATCTTCGATCTG
65 AGGCTAGTGGCTTAAATCTGCTCCATTGCCGATATAT-GAGATAAGATTC-CCATCTTCGATCTA
85960758 CTCCACT
128 CTCCACT
85960765 GCAACCTCAG
Statistics
Matches: 269, Mismatches: 32, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
174 3 0.01
175 44 0.16
176 214 0.80
177 5 0.02
178 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (173 bp):
TTCTTGCTACCTCAGGAAGATAAGACCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAA
GGCTAGTGGCTTAAATCTGCTCCATTGCCGATATATGAGATAAGATTCCCATCTTCGATCTACTC
CACTACTGCTTAAGGAGATAAGATCTTCAATATTCAATCTGCT
Found at i:85960882 original size:99 final size:99
Alignment explanation
Indices: 85960699--85960886 Score: 297
Period size: 99 Copynumber: 1.9 Consensus size: 99
85960689 GATAAGGCTG
* *
85960699 GTGGCTTAAATCTGCTTCATTGCCAATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAC
1 GTGGCTTAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCAAC
*
85960764 TGCAACCTCAGGAAAATAAGATCTTCCATCTTCA
66 TGCAACCTAAGGAAAATAAGATCTTCCATCTTCA
* * *
85960798 GTGGCTTAGATCTGCTCCATTTCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCAAC
1 GTGGCTTAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCAAC
*
85960863 TGCAATCCTAAGG-AGATAAGATCT
66 TGCAA-CCTAAGGAAAATAAGATCT
85960887 AACTTCACCA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
99 75 0.93
100 6 0.07
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (99 bp):
GTGGCTTAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCAAC
TGCAACCTAAGGAAAATAAGATCTTCCATCTTCA
Found at i:85966216 original size:93 final size:93
Alignment explanation
Indices: 85966104--85966275 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85966094 CGCCCATAAG
* *
85966104 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85966169 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85966197 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85966262 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85966276 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85966272 original size:46 final size:46
Alignment explanation
Indices: 85966097--85966272 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85966087 TGTAACCCGC
* * *
85966097 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85966143 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85966193 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85966236 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85966273 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85973791 original size:93 final size:93
Alignment explanation
Indices: 85973679--85973850 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85973669 CGCCCATAAG
* *
85973679 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85973744 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85973772 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85973837 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85973851 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85973847 original size:46 final size:46
Alignment explanation
Indices: 85973672--85973847 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85973662 TGTAACCCGC
* * *
85973672 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85973718 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85973768 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85973811 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85973848 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85983337 original size:93 final size:93
Alignment explanation
Indices: 85983225--85983396 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85983215 CGCCCATAAG
* *
85983225 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85983290 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85983318 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85983383 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85983397 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85983393 original size:46 final size:46
Alignment explanation
Indices: 85983218--85983393 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85983208 ATTAACCCGC
* * *
85983218 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85983264 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85983314 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85983357 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85983394 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85990890 original size:93 final size:93
Alignment explanation
Indices: 85990778--85990949 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
85990768 CGCCCATAAG
* *
85990778 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85990843 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
85990871 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
85990936 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
85990950 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:85990946 original size:46 final size:46
Alignment explanation
Indices: 85990771--85990946 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
85990761 ATGTAACCGC
* *
85990771 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
85990817 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
85990867 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
85990910 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
85990947 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:86001403 original size:23 final size:23
Alignment explanation
Indices: 86001367--86001413 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
86001357 TATAAAAAGT
* *
86001367 ATTTGAACATAATATCATACAAA
1 ATTTGAAAACAATATCATACAAA
* *
86001390 ATTTGAAAACAATATGATATAAA
1 ATTTGAAAACAATATCATACAAA
86001413 A
1 A
86001414 GGAAATTCTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (23 bp):
ATTTGAAAACAATATCATACAAA
Found at i:86007299 original size:12 final size:12
Alignment explanation
Indices: 86007282--86007308 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86007272 GAGGAGAATC
86007282 TGGCTTCTGAGA
1 TGGCTTCTGAGA
86007294 TGGCTTCTGAGA
1 TGGCTTCTGAGA
86007306 TGG
1 TGG
86007309 ATCAATCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.33
Consensus pattern (12 bp):
TGGCTTCTGAGA
Found at i:86009576 original size:22 final size:23
Alignment explanation
Indices: 86009529--86009577 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
86009519 TTATAAAACC
* *
86009529 TAAAGATGAAGTAAAAATAGTAT
1 TAAAGATGAAATAAAAATAATAT
86009552 TAAAGA-GAAATAAAAATTAAT-T
1 TAAAGATGAAATAAAAA-TAATAT
86009574 TAAA
1 TAAA
86009578 AACATAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (23 bp):
TAAAGATGAAATAAAAATAATAT
Found at i:86011087 original size:18 final size:18
Alignment explanation
Indices: 86011064--86011107 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
86011054 TATAGTCCTT
*
86011064 TTAAATATTTTTTATCTA
1 TTAAATATTTTATATCTA
*
86011082 TTAAATACTTTATATCTA
1 TTAAATATTTTATATCTA
86011100 -TAAATATT
1 TTAAATATT
86011108 AATTATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (18 bp):
TTAAATATTTTATATCTA
Found at i:86011178 original size:17 final size:15
Alignment explanation
Indices: 86011130--86011182 Score: 56
Period size: 14 Copynumber: 3.5 Consensus size: 15
86011120 TAGTATATAT
*
86011130 TATTT-TTATATAT-
1 TATTTATTATAAATA
*
86011143 TATTTATTATATATA
1 TATTTATTATAAATA
86011158 TATTTACTTATAAATTA
1 TATTTA-TTATAAA-TA
86011175 TATTTATT
1 TATTTATT
86011183 TATATATTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
13 5 0.14
14 8 0.23
15 6 0.17
16 8 0.23
17 8 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTTATTATAAATA
Found at i:86011181 original size:29 final size:27
Alignment explanation
Indices: 86011110--86011191 Score: 78
Period size: 29 Copynumber: 3.0 Consensus size: 27
86011100 TAAATATTAA
* *
86011110 TTATAAAATATA-GTATATAT-TATTT
1 TTATAAATTATATTTATATATATATTT
* *
86011135 TTATATATTATTTATTATATATATATTT
1 TTATAAATTATAT-TTATATATATATTT
*
86011163 ACTTATAAATTATATTTATTTATATATTT
1 --TTATAAATTATATTTATATATATATTT
86011192 CATATATATT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
25 9 0.20
27 7 0.16
28 5 0.11
29 13 0.29
30 11 0.24
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (27 bp):
TTATAAATTATATTTATATATATATTT
Found at i:86021381 original size:28 final size:27
Alignment explanation
Indices: 86021349--86021404 Score: 103
Period size: 27 Copynumber: 2.0 Consensus size: 27
86021339 GAAAAAGATT
86021349 ACTACATAGGGCATTTATACAAAGAGAA
1 ACTACAT-GGGCATTTATACAAAGAGAA
86021377 ACTACATGGGCATTTATACAAAGAGAA
1 ACTACATGGGCATTTATACAAAGAGAA
86021404 A
1 A
86021405 AGCTCTAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.21
Consensus pattern (27 bp):
ACTACATGGGCATTTATACAAAGAGAA
Found at i:86021868 original size:16 final size:16
Alignment explanation
Indices: 86021830--86021880 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
86021820 TAAAATATTT
* *
86021830 TTAATACTATAATTAAA
1 TTAATAATAT-ATAAAA
86021847 TATAATAATATATAAAA
1 T-TAATAATATATAAAA
86021864 TTAATAAT-TATTAAAA
1 TTAATAATATA-TAAAA
86021880 T
1 T
86021881 CTATAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 2 0.07
16 13 0.43
17 7 0.23
18 8 0.27
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
TTAATAATATATAAAA
Found at i:86022483 original size:2 final size:2
Alignment explanation
Indices: 86022476--86022518 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
86022466 TATTACTAAA
* *
86022476 AC AC AC AC AC AC AC AC AC AC AC AT AC AC AC AT AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
86022518 A
1 A
86022519 TCACTATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.44, G:0.00, T:0.05
Consensus pattern (2 bp):
AC
Found at i:86023572 original size:38 final size:38
Alignment explanation
Indices: 86023521--86023595 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
86023511 TTGGGAATTA
86023521 TCAAAATATATTTTCCGTTTTCTTTTTGAAATTTTCGG
1 TCAAAATATATTTTCCGTTTTCTTTTTGAAATTTTCGG
*
86023559 TCAAAATATATTTTTCGTTTTCTTTTTGAAATTTTCG
1 TCAAAATATATTTTCCGTTTTCTTTTTGAAATTTTCG
86023596 ATTTTCTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.55
Consensus pattern (38 bp):
TCAAAATATATTTTCCGTTTTCTTTTTGAAATTTTCGG
Found at i:86028075 original size:8 final size:9
Alignment explanation
Indices: 86028044--86028076 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
86028034 GTATAAGGAA
86028044 ATTTTGTGT
1 ATTTTGTGT
86028053 ATTTTGTGT
1 ATTTTGTGT
86028062 ATTTTGTG-
1 ATTTTGTGT
86028070 ATTTTGT
1 ATTTTGT
86028077 TAATTAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.12, C:0.00, G:0.21, T:0.67
Consensus pattern (9 bp):
ATTTTGTGT
Found at i:86028596 original size:42 final size:42
Alignment explanation
Indices: 86028484--86028639 Score: 149
Period size: 43 Copynumber: 3.6 Consensus size: 42
86028474 TTTCGATATG
* *
86028484 TAATTTCGTGCAAGACCACGTCTGGGACAATCA-CATCG-ATTT
1 TAATTTCGTGTAAGACCACGTCTGGGAC-ATCAGTATCGTA-TT
* *
86028526 TAAATTTACGTGTAAGACCATGTTTGGGACATCAGTATCGTATT
1 T-AATTT-CGTGTAAGACCACGTCTGGGACATCAGTATCGTATT
*
86028570 TAATTTCGTGTAAGACC-CTGTCTGGGATAGTC-GTATCGATATT
1 TAATTTCGTGTAAGACCAC-GTCTGGGACA-TCAGTATCG-TATT
* * *
86028613 TGATTACATGTAAGACCACGTCTGGGA
1 TAATTTCGTGTAAGACCACGTCTGGGA
86028640 TGTTGGCATT
Statistics
Matches: 96, Mismatches: 10, Indels: 15
0.79 0.08 0.12
Matches are distributed among these distances:
42 26 0.27
43 42 0.44
44 27 0.28
45 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (42 bp):
TAATTTCGTGTAAGACCACGTCTGGGACATCAGTATCGTATT
Found at i:86029260 original size:33 final size:34
Alignment explanation
Indices: 86029217--86029287 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
86029207 AAACAGCATG
* *
86029217 CAGTAACAGTCTGGGTCTTACCCCTATACAGTAT
1 CAGTAACAGTCTGGGCCTTACCCCTATACAGTAA
* *
86029251 CAGT-ACAGTCTGGGCCTTAGCCTTATACAGTAA
1 CAGTAACAGTCTGGGCCTTACCCCTATACAGTAA
86029284 CAGT
1 CAGT
86029288 GTAGGCCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 29 0.88
34 4 0.12
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTTACCCCTATACAGTAA
Found at i:86038484 original size:35 final size:35
Alignment explanation
Indices: 86038445--86038514 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
86038435 ATGAAACAGG
86038445 AAAGGTTTGGCTATAGAGAGGCAAACTGATAGCAC
1 AAAGGTTTGGCTATAGAGAGGCAAACTGATAGCAC
86038480 AAAGGTTTGGCTATAGAGAGGCAAACTGATAGCAC
1 AAAGGTTTGGCTATAGAGAGGCAAACTGATAGCAC
86038515 TATGGGAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20
Consensus pattern (35 bp):
AAAGGTTTGGCTATAGAGAGGCAAACTGATAGCAC
Found at i:86046956 original size:43 final size:43
Alignment explanation
Indices: 86046809--86046965 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 43
86046799 TGTAATTTCG
* *
86046809 TGTAAGACCACGTCTGGGATGTTGGTATCGAT-TTGAGATTTACGA
1 TGTAAGACCACGTCTGGGATGTTGGCATCGATATT-TGA-TTAC-A
* * **** * *
86046854 -GTAAGACCATGTCTGAGACACCGGCATCG-TATTTGATTTCG
1 TGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACA
* ** * *
86046895 TGTATGACCTTGTTTGGGATAG-TGGCATCGATATTTGATTGCA
1 TGTAAGACCACGTCTGGGAT-GTTGGCATCGATATTTGATTACA
86046938 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGATGTTGGCAT
86046966 TGTATGAACT
Statistics
Matches: 84, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
42 25 0.30
43 35 0.42
44 24 0.29
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACA
Found at i:86049401 original size:39 final size:39
Alignment explanation
Indices: 86049323--86049465 Score: 207
Period size: 39 Copynumber: 3.6 Consensus size: 39
86049313 CCGCACAAAG
* * *
86049323 GCCTTCGGGACTTAACCCGGATATCACAA-TTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCT-CACAATT
*
86049363 GCCTTCGGGCTTAGCCCGGATATCATAACTCTCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCTCACAATT
* *
86049402 GTCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCTCACAATT
86049441 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
86049466 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
39 83 0.88
40 11 0.12
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCTCACAATT
Found at i:86053144 original size:31 final size:31
Alignment explanation
Indices: 86053109--86053170 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
86053099 TACCATACTC
86053109 ATTTTGAGAATAAAGTAAATTTGT-ATTTATA
1 ATTTTGAG-ATAAAGTAAATTTGTAATTTATA
** *
86053140 ATTTTTTGATAAGGTAAATTTGTAATTTATA
1 ATTTTGAGATAAAGTAAATTTGTAATTTATA
86053171 CTATCTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 14 0.52
31 13 0.48
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTTTGAGATAAAGTAAATTTGTAATTTATA
Found at i:86053261 original size:6 final size:6
Alignment explanation
Indices: 86053250--86053279 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
86053240 ATTGAAATAA
86053250 TATTTT TATTTT TATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT
86053280 CATTAGAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:86062661 original size:15 final size:14
Alignment explanation
Indices: 86062633--86062675 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
86062623 CAATATCATG
*
86062633 AGTATAGTAAATTTT
1 AGTATA-TATATTTT
86062648 AGTATTATATATTTT
1 AGTA-TATATATTTT
*
86062663 TGTATATATATTT
1 AGTATATATATTT
86062676 AAAATATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.36
15 14 0.56
16 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (14 bp):
AGTATATATATTTT
Found at i:86062672 original size:16 final size:15
Alignment explanation
Indices: 86062643--86062675 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
86062633 AGTATAGTAA
86062643 ATTTTAGTATTATAT
1 ATTTTAGTATTATAT
*
86062658 ATTTTTGTA-TATAT
1 ATTTTAGTATTATAT
86062672 ATTT
1 ATTT
86062676 AAAATATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (15 bp):
ATTTTAGTATTATAT
Found at i:86062912 original size:13 final size:15
Alignment explanation
Indices: 86062883--86062915 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
86062873 TGTGGGAAAA
86062883 ATAAATATTTGATAT
1 ATAAATATTTGATAT
86062898 ATAAATA-TT-ATAT
1 ATAAATATTTGATAT
86062911 ATAAA
1 ATAAA
86062916 GAAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 2 0.11
15 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAAATATTTGATAT
Found at i:86063031 original size:27 final size:27
Alignment explanation
Indices: 86063001--86063053 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86062991 CATAATGATA
*
86063001 TATATAATATATT-TTTTATTATATAAT
1 TATATAAT-TATTATTTGATTATATAAT
*
86063028 TATATAATTATTATTTGATTTTATAA
1 TATATAATTATTATTTGATTATATAA
86063054 ATAAAAGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (27 bp):
TATATAATTATTATTTGATTATATAAT
Found at i:86080633 original size:5 final size:5
Alignment explanation
Indices: 86080625--86080653 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
86080615 TGTTTTTGGG
86080625 TTTCT TTTCT TTTCT TTTCT TTTCT TTTC
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTC
86080654 AATCTATTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTCT
Found at i:86086936 original size:22 final size:24
Alignment explanation
Indices: 86086886--86086929 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
86086876 TTAGCACTTG
*
86086886 AATTCACATCTTTTTTAGTATTTA
1 AATTTACATCTTTTTTAGTATTTA
86086910 AATTTACAT-TTTTTTA-TATT
1 AATTTACATCTTTTTTAGTATT
86086930 AACATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 7 0.37
24 8 0.42
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (24 bp):
AATTTACATCTTTTTTAGTATTTA
Found at i:86094504 original size:24 final size:24
Alignment explanation
Indices: 86094477--86094559 Score: 80
Period size: 24 Copynumber: 3.4 Consensus size: 24
86094467 AGCTTGTAAG
*
86094477 AGCTTATTGTTCTCAGCTCATAAA
1 AGCTTACTGTTCTCAGCTCATAAA
*
86094501 AGCTTACTGTT-TCCAGCTCGAT-AG
1 AGCTTACTGTTCT-CAGCTC-ATAAA
* *
86094525 AGCTTACTGTTCATTAGCTCAAAATA
1 AGCTTACTGTTC-TCAGCTCATAA-A
86094551 AGCTTACTG
1 AGCTTACTG
86094560 ATCATAGCTC
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
23 1 0.02
24 29 0.60
25 8 0.17
26 10 0.21
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.35
Consensus pattern (24 bp):
AGCTTACTGTTCTCAGCTCATAAA
Found at i:86094569 original size:50 final size:48
Alignment explanation
Indices: 86094451--86094577 Score: 121
Period size: 50 Copynumber: 2.6 Consensus size: 48
86094441 AGCTCGTATG
* * * * *
86094451 AGCTTACTGATATATCAGCTTGTAAGAGCTTATTGTTCTCAGCTCATAAA
1 AGCTTACTG-TAT-CCAGCTCGAAAGAGCTTACTGTTCTCAGCTCAAAAA
* * *
86094501 AGCTTACTGTTTCCAGCTCGATAGAGCTTACTGTTCATTAGCTCAAAATA
1 AGCTTACTGTATCCAGCTCGAAAGAGCTTACTGTTC-TCAGCTCAAAA-A
*
86094551 AGCTTACTG-ATCATAGCTCGAAAGAGC
1 AGCTTACTGTATC-CAGCTCGAAAGAGC
86094578 AAATACAATG
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
48 19 0.30
49 13 0.21
50 31 0.49
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (48 bp):
AGCTTACTGTATCCAGCTCGAAAGAGCTTACTGTTCTCAGCTCAAAAA
Found at i:86094706 original size:20 final size:20
Alignment explanation
Indices: 86094681--86094718 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
86094671 ATTCTTCTAA
*
86094681 TGATTATACAGATGAATTCC
1 TGATTATACAAATGAATTCC
*
86094701 TGATTATATAAATGAATT
1 TGATTATACAAATGAATT
86094719 GTCGATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (20 bp):
TGATTATACAAATGAATTCC
Found at i:86096300 original size:39 final size:39
Alignment explanation
Indices: 86096246--86096382 Score: 139
Period size: 39 Copynumber: 3.5 Consensus size: 39
86096236 AGTGAAAATA
*
86096246 CAATTTTATAACCAAATACTCAAATTCTTATTGGAAACC
1 CAATTTTGTAACCAAATACTCAAATTCTTATTGGAAACC
* * * * **
86096285 CAATTTTGTATCCAAATACTCAAATTTTTAATGAAAAAATA
1 CAATTTTGTAACCAAATACTCAAATTCTTATTG--GAAACC
* * * *
86096326 CAATTTTGTAACTAAATACTCAAAGTCCTATTGGAAGCC
1 CAATTTTGTAACCAAATACTCAAATTCTTATTGGAAACC
**
86096365 CAACCTTGTAACCAAATA
1 CAATTTTGTAACCAAATA
86096383 ATTTGTAAAA
Statistics
Matches: 76, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
39 46 0.61
41 30 0.39
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (39 bp):
CAATTTTGTAACCAAATACTCAAATTCTTATTGGAAACC
Found at i:86096526 original size:22 final size:23
Alignment explanation
Indices: 86096483--86096526 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
86096473 TTTTTTATGA
*
86096483 TTTTTACAATTTTTAATTAATTT
1 TTTTTACAATTTTTAATGAATTT
*
86096506 TTTTTACATTTTTTAA-GAATT
1 TTTTTACAATTTTTAATGAATT
86096527 CAGTCTTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTTTACAATTTTTAATGAATTT
Found at i:86097326 original size:6 final size:6
Alignment explanation
Indices: 86097269--86097306 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
86097259 TCATTATCAT
86097269 CATCTC CATCTC CATCTC CATCTC CATCTC CATCTC CA
1 CATCTC CATCTC CATCTC CATCTC CATCTC CATCTC CA
86097307 ACGTTATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.18, C:0.50, G:0.00, T:0.32
Consensus pattern (6 bp):
CATCTC
Found at i:86099349 original size:22 final size:22
Alignment explanation
Indices: 86099305--86099349 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
86099295 TTAATCATTA
* **
86099305 TTATTCAGTATCAGTCATTTAT
1 TTATTCAGTAACAGTCAAATAT
86099327 TTATTCAGTAACAGTCAAATAT
1 TTATTCAGTAACAGTCAAATAT
86099349 T
1 T
86099350 CGGTAGCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (22 bp):
TTATTCAGTAACAGTCAAATAT
Found at i:86101760 original size:47 final size:46
Alignment explanation
Indices: 86101707--86101922 Score: 270
Period size: 47 Copynumber: 4.6 Consensus size: 46
86101697 TCGGCTTCGC
* * *
86101707 CACATATATACACTTTCACGTTCATCACATTGGCCATTCTGCCTTAT
1 CACATATATGCA-TTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
86101754 CTCATATATGCACATTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCA-TTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * *
86101801 CACACATATGCATGCTCACATTCATCACATTGGCCATTCGGTCTTAT
1 CACATATATGCAT-TTCACATTCATCACATTGGCCATTCGGCCTTAT
* * * *
86101848 CTCATATATGCATGTTCATAATCATCACATTGGCCATTCGGCCTTGT
1 CACATATATGCAT-TTCACATTCATCACATTGGCCATTCGGCCTTAT
*
86101895 CACATATATGCAGGTTCACATTCATCAC
1 CACATATATGCA-TTTCACATTCATCAC
86101923 CTTAAATCCT
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.34
Consensus pattern (46 bp):
CACATATATGCATTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:86101828 original size:94 final size:94
Alignment explanation
Indices: 86101722--86101922 Score: 303
Period size: 94 Copynumber: 2.1 Consensus size: 94
86101712 ATATACACTT
* * *
86101722 TCACGTTCATCACATTGGCCATTCTGCCTTATCTCATATATGCACATTCACATTCATCACATTGG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACAATCATCACATTGG
*
86101787 CCATTCGGCCTTATCACACATATGCATGC
66 CCATTCGGCCTTATCACACATATGCAGGC
* ** *
86101816 TCACATTCATCACATTGGCCATTCGGTCTTATCTCATATATGCATGTTCATAATCATCACATTGG
1 TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACAATCATCACATTGG
* * *
86101881 CCATTCGGCCTTGTCACATATATGCAGGT
66 CCATTCGGCCTTATCACACATATGCAGGC
86101910 TCACATTCATCAC
1 TCACATTCATCAC
86101923 CTTAAATCCT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 96 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (94 bp):
TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACAATCATCACATTGG
CCATTCGGCCTTATCACACATATGCAGGC
Found at i:86103504 original size:2 final size:2
Alignment explanation
Indices: 86103497--86103521 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
86103487 CCGAATGTAC
86103497 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
86103522 CTCAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86106342 original size:40 final size:39
Alignment explanation
Indices: 86106070--86106346 Score: 258
Period size: 40 Copynumber: 7.0 Consensus size: 39
86106060 CACATCACCG
* * *
86106070 GCACGAATGCCCTTCGGGACTTAGCCCGGATATAACA-TCG
1 GCACAAATG-CCTTCGGGACTTAGCCCGGATATATCACT-A
* * * *
86106110 GCACGAATACCCTTCGGGATTTAG-CCGGATATAGCTACTCA
1 GCACAAAT-GCCTTCGGGACTTAGCCCGGATATATC-ACT-A
* * * *
86106151 -CTCAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATAT-ATCACTA
* * *
86106190 GCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATA-TCACTA
*
86106230 GCACAATTGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATA-TA-TCACTA
*
86106269 GCACAAATGCCTTCGGGACTTAGCCCGGGTATATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATATCACTA
* * *
86106308 GCACGAATGCTCTTCGGGACATAGCCCGGGTATATCACT
1 GCACAAATGC-CTTCGGGACTTAGCCCGGATATATCACT
86106347 CTCAATTCTC
Statistics
Matches: 203, Mismatches: 23, Indels: 22
0.82 0.09 0.09
Matches are distributed among these distances:
38 1 0.00
39 73 0.36
40 125 0.62
41 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATATCACTA
Found at i:86106346 original size:79 final size:78
Alignment explanation
Indices: 86106070--86106346 Score: 251
Period size: 79 Copynumber: 3.5 Consensus size: 78
86106060 CACATCACCG
* * * * * *
86106070 GCACGAATGCCCTTCGGGACTTAGCCCGGATATAACA-TCGGCACGAATACCCTTCGGGATTTAG
1 GCACGAATG-CCTTCGGGACTTAGCCCGGGTATATCACT-AGCACAAAT-GCCTTCGGGACTTAG
*
86106134 -CCGGATATAGCTACTCA
63 CCCGGATATATC-ACT-A
* * * * * *
86106151 -CTCAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGAGACTTAGCC
1 GCACGAATGCCTTCGGGACTTAGCCCGGGTAT-ATCACTAGCACAAATGCCTTCGGGACTTAGCC
* *
86106215 CGGATATAGTAACTC
65 CGGATATA-TCACTA
*
86106230 GCAC-AATTGCCTTCGGG-CTTAGCCC-GGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAG
1 GCACGAA-TGCCTTCGGGACTTAGCCCGGGTA-TA-TCACTAGCACAAATGCCTTCGGGACTTAG
*
86106292 CCCGGGTATATCACTA
63 CCCGGATATATCACTA
*
86106308 GCACGAATGCTCTTCGGGACATAGCCCGGGTATATCACT
1 GCACGAATGC-CTTCGGGACTTAGCCCGGGTATATCACT
86106347 CTCAATTCTC
Statistics
Matches: 160, Mismatches: 24, Indels: 26
0.76 0.11 0.12
Matches are distributed among these distances:
78 14 0.09
79 94 0.59
80 48 0.30
81 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
GCACGAATGCCTTCGGGACTTAGCCCGGGTATATCACTAGCACAAATGCCTTCGGGACTTAGCCC
GGATATATCACTA
Found at i:86109271 original size:40 final size:39
Alignment explanation
Indices: 86109209--86109432 Score: 208
Period size: 40 Copynumber: 5.6 Consensus size: 39
86109199 CGGATGATAA
* *
86109209 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATT
* *
86109249 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAAT-T
**
86109289 CCGGGCTAAGTCCCGAAGGTGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--AT-T
** * *
86109329 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATT
* *
86109368 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT--TACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--AT-T
86109408 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86109433 AGCTAGTGGC
Statistics
Matches: 157, Mismatches: 16, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
37 3 0.02
39 35 0.22
40 115 0.73
41 3 0.02
42 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATT
Found at i:86109412 original size:79 final size:80
Alignment explanation
Indices: 86109249--86109432 Score: 271
Period size: 79 Copynumber: 2.3 Consensus size: 80
86109239 GTGGCTAATT
* **
86109249 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* ** *
86109314 TGCGAGCTATTATAT
66 TGCAAGCTACCATAA
* *
86109329 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
86109393 TGCAAGTTACCATAA
66 TGCAAGCTACCATAA
86109408 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86109433 AGCTAGTGGC
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
79 58 0.62
80 36 0.38
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACCATAA
Found at i:86109421 original size:119 final size:120
Alignment explanation
Indices: 86109209--86109426 Score: 314
Period size: 119 Copynumber: 1.8 Consensus size: 120
86109199 CGGATGATAA
* * *
86109209 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* * *
86109274 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATAT
66 TGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATAT
* * * *
86109329 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
*
86109392 GTGCAAGTTACCATAACCGGGCTAAGTCCCGAAGG
65 GTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGG
86109427 CATTTGAGCT
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
119 58 0.67
120 28 0.33
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATAT
Found at i:86109465 original size:79 final size:79
Alignment explanation
Indices: 86109249--86109455 Score: 265
Period size: 79 Copynumber: 2.6 Consensus size: 79
86109239 GTGGCTAATT
* **
86109249 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* ** *
86109314 TGCGAGCTATTATAT
65 TGCAAGCTACCATAA
*
86109329 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
86109393 TGCAAGTTACCATAA
65 TGCAAGCTACCATAA
* * *
86109408 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
86109456 ACCCTGAAGG
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 72 0.65
80 38 0.34
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACCATAA
Found at i:86111204 original size:46 final size:46
Alignment explanation
Indices: 86111137--86111227 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
86111127 TATATATACA
* * *
86111137 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATC
* * *
86111183 CATCTCATACACGTTTCACATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATAT
86111228 ATACACTTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTCACCACATATC
Found at i:86111258 original size:47 final size:46
Alignment explanation
Indices: 86111198--86111436 Score: 273
Period size: 47 Copynumber: 5.1 Consensus size: 46
86111188 CATACACGTT
* ** * *
86111198 TCACATTAGCCATTCGG-CTTCGCCACATATATACACTTTCACGTTCA
1 TCACATTGGCCATTCGGCCTT-ATCACATATATGCA-TTTCACATTCA
* * * *
86111245 TCACATTGGCCATTCTGTCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCA-TTTCACATTCA
* *
86111292 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCAT-TTCACATTCA
* * *
86111339 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCATAATCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCAT-TTCACATTCA
* *
86111386 TCACATTGGCCATTCGGCCTTATCACATATATACAGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCA-TTTCACATTCA
86111433 TCAC
1 TCAC
86111437 CTTAAATCCT
Statistics
Matches: 165, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
47 162 0.98
48 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATTTCACATTCA
Found at i:86111305 original size:94 final size:93
Alignment explanation
Indices: 86111198--86111436 Score: 309
Period size: 94 Copynumber: 2.5 Consensus size: 93
86111188 CATACACGTT
* ** * *
86111198 TCACATTAGCCATTCGG-CTTCGCCACATATATACACTTTCACGTTCATCACATTGGCCATTCTG
1 TCACATTGGCCATTCGGCCTT-ATCACATATATACA-TTTCACATTCATCACATTGGCCATTCGG
* *
86111262 TCTTATCTCATATATGCACATTCACATTCA
64 CCTTATCTCATATATGCACATTCACAATCA
* * *
86111292 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATACAT-TTCACATTCATCACATTGGCCATTCGGC
** *
86111357 CTTATCTCATATATGCATGTTCATAATCA
65 CTTATCTCATATATGCACATTCACAATCA
*
86111386 TCACATTGGCCATTCGGCCTTATCACATATATACAGGTTCACATTCATCAC
1 TCACATTGGCCATTCGGCCTTATCACATATATACA-TTTCACATTCATCAC
86111437 CTTAAATCCT
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
93 1 0.01
94 121 0.97
95 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (93 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACATTTCACATTCATCACATTGGCCATTCGGCC
TTATCTCATATATGCACATTCACAATCA
Found at i:86115401 original size:29 final size:29
Alignment explanation
Indices: 86115359--86115417 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
86115349 AGCTCGTGTC
86115359 TACCATGGACGAAAAAAAGAAAGTTTTGT
1 TACCATGGACGAAAAAAAGAAAGTTTTGT
* *
86115388 TACCATGGATGAAAGAAAGAAAGTTTTGT
1 TACCATGGACGAAAAAAAGAAAGTTTTGT
86115417 T
1 T
86115418 TTCTTTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.27
Consensus pattern (29 bp):
TACCATGGACGAAAAAAAGAAAGTTTTGT
Found at i:86116938 original size:16 final size:16
Alignment explanation
Indices: 86116917--86116970 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
86116907 TTTGGTTCAC
86116917 TGTAATGGAATAAGGT
1 TGTAATGGAATAAGGT
*
86116933 TGTAATGGAATAAAGT
1 TGTAATGGAATAAGGT
86116949 TGTAATGGAAT-AGAGT
1 TGTAATGGAATAAG-GT
86116965 TGTAAT
1 TGTAAT
86116971 TAGTAATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 1 0.03
16 34 0.97
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAAGGT
Done.