Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 290 of 328
Found at i:86651754 original size:35 final size:35
Alignment explanation
Indices: 86651713--86651781 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
86651703 TCTGGGATCG
*
86651713 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAT
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAT
* * *
86651748 CATATCTTTGAAGATTACTTTCCATATTTTCCAA
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAA
86651782 GCTCCGGAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.41
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATTTGCCAAT
Found at i:86656967 original size:35 final size:35
Alignment explanation
Indices: 86656928--86656998 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
86656918 GCTGGGATCA
* *
86656928 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAG
1 CATATCTTTCAAGATCACCTTCCATATTTGCCAAG
* * *
86656963 CATATCTTTCAAGATTACTTTCCATATTTTCCAAG
1 CATATCTTTCAAGATCACCTTCCATATTTGCCAAG
86656998 C
1 C
86656999 TCCGGAGATG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (35 bp):
CATATCTTTCAAGATCACCTTCCATATTTGCCAAG
Found at i:86657183 original size:42 final size:42
Alignment explanation
Indices: 86657124--86657616 Score: 425
Period size: 42 Copynumber: 11.7 Consensus size: 42
86657114 ACCCATGACA
*
86657124 CTAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
* *
86657166 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAC
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
* ** *
86657208 CTTAGTG--CTTGAAT-GTTTGGGAGCCTCGGGCACCATCGGCAAC
1 C-TAG-GCCCTTG-GTCGTGCGAGAGCCTCGGGCACCATCGGC-AC
86657251 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCAC
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
* * * *
86657292 CTAGGCCCTTGGAT-GTGCGGGAGCGTTGGGCACCATCGGTAAC
1 CTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-CAC
* * * * * **
86657335 TTAGGCCCCTGGTTGTGC-AGGAGCCTCGAGTACCATCAGTAAC
1 CTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATC-GGCAC
* *
86657378 CTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATCGGCAAC
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-AC
* * *
86657420 CTAGG-CCTTGATCGTGCGAGAACCTCGAGCACCATCGGCAAC
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-AC
* * *
86657462 CTAGG-CCTTGATCGTGCAAGAACCTCGGGCACCATCGGCAAC
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-AC
* * *
86657504 CTCGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAC
1 CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
* * * * *
86657546 CTTGGTGCCTTGGAT-GTGCCG-GAGCCTCGAGCAGCATTGGCAC
1 CTAGG-CCCTTGG-TCGTG-CGAGAGCCTCGGGCACCATCGGCAC
* ** *
86657589 CTTGGTGCTTGGAT-GTGCGGGAGCCTCG
1 CTAGGCCCTTGG-TCGTGCGAGAGCCTCG
86657617 ATCAGTATTG
Statistics
Matches: 384, Mismatches: 47, Indels: 40
0.82 0.10 0.08
Matches are distributed among these distances:
41 31 0.08
42 224 0.58
43 124 0.32
44 5 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (42 bp):
CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAC
Found at i:86657401 original size:23 final size:23
Alignment explanation
Indices: 86657375--86657444 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
86657365 TACCATCAGT
86657375 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
* * ***
86657398 AACCTCGGGCACCATCG-GC---
1 AACCTAGGCCTTGATCGTGCGAG
86657417 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
86657440 AACCT
1 AACCT
86657445 CGAGCACCAT
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 12 0.36
20 2 0.06
22 2 0.06
23 17 0.52
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (23 bp):
AACCTAGGCCTTGATCGTGCGAG
Found at i:86657407 original size:169 final size:169
Alignment explanation
Indices: 86657136--86657540 Score: 482
Period size: 169 Copynumber: 2.4 Consensus size: 169
86657126 AGGCCCTTAG
* * * * *
86657136 TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
1 TCGTGCAAGAACCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGAGCACC
* ** * *
86657200 ATCGGT-ACCTTAGTG-CTTGAAT-GTTTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
66 ATCAGTAACC-TAG-GCCTTG-ATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCTTG
* * *
86657262 GTCGTGCGAGAGCCTCG-GGACCATCGGC-ACCTAGGCCCTTGGA
127 ATCGTGCGAGAACCTCGAGCACCATCGGCAACCTAGG-CCTT-GA
** * * * * * * *
86657305 T-GTGCGGGAGCGTTGGGCACCATCGGTAACTTAGGCCCCTGGTTGTGCAGGAGCCTCGAGTACC
1 TCGTGCAAGAACCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGAGCACC
86657369 ATCAGTAACCTAGGCCTTGATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCTTGATCG
66 ATCAGTAACCTAGGCCTTGATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCTTGATCG
86657434 TGCGAGAACCTCGAGCACCATCGGCAACCTAGGCCTTGA
131 TGCGAGAACCTCGAGCACCATCGGCAACCTAGGCCTTGA
* * *
86657473 TCGTGCAAGAACCTCGGGCACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGAGCACC
1 TCGTGCAAGAACCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGAGCACC
86657538 ATC
66 ATC
86657541 GGCACCTTGG
Statistics
Matches: 199, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
168 48 0.24
169 141 0.71
170 10 0.05
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (169 bp):
TCGTGCAAGAACCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGAGCACC
ATCAGTAACCTAGGCCTTGATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCTTGATCG
TGCGAGAACCTCGAGCACCATCGGCAACCTAGGCCTTGA
Found at i:86657600 original size:85 final size:85
Alignment explanation
Indices: 86657138--86657705 Score: 541
Period size: 84 Copynumber: 6.7 Consensus size: 85
86657128 GCCCTTAGTC
* *
86657138 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* *
86657202 CGGTACCTTAGTG-CTTGAAT
66 CGGCACCTTAG-GCCTTGGAT
** * *
86657222 GTTTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
86657286 CGGCACC-TAGGCCCTTGGAT
66 CGGCACCTTAGG-CCTTGGAT
* * * * * * * *
86657306 GTGCGGGAGCGTTGGGCACCATCGGTAACTTAGGCCCCTGGTTGTGCAGGAGCCTCGAGTACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
**
86657371 CAGTAACC-TAGGCCTT-GAT
66 C-GGCACCTTAGGCCTTGGAT
* * * * *
86657390 CGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGAGCACCA
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
86657454 TCGGCAACC-TAGGCCTT-GAT
65 TCGGC-ACCTTAGGCCTTGGAT
** * *
86657474 CGTGCAAGAACCTCGGGCACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
*
86657539 TCGGCACCTTGGTGCCTTGGAT
65 TCGGCACCTTAG-GCCTTGGAT
* * * * * ** * **
86657561 GTGCCGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGATCAGTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCA
* * *
86657624 TTGGCACCTT-GGTGCTTAGAT
65 TCGGCACCTTAGG-CCTTGGAT
* * * * *
86657645 GTGCGGGAGCCTCGGACACCATCGACAACCTAGGACATTGGAT-GTGCGGGTGCCTCGAGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCA
86657706 GCAGGGGTAC
Statistics
Matches: 402, Mismatches: 68, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
82 1 0.00
83 5 0.01
84 192 0.48
85 167 0.42
86 34 0.08
87 3 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
CGGCACCTTAGGCCTTGGAT
Found at i:86657617 original size:42 final size:42
Alignment explanation
Indices: 86657138--86657737 Score: 270
Period size: 42 Copynumber: 14.2 Consensus size: 42
86657128 GCCCTTAGTC
* * * * **
86657138 GTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* * * * *
86657179 CGTGCGGGAGCCTCGGGCACCATCGGTACCTTAGTGCTTGAAT
1 -GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
** * * * **
86657222 GTTTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
* * * * **
86657264 CGTGCGAGAGCCTCG-GGACCATCGGCACCTAGGCCCTTGGAT
1 -GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* * * * * * ** * *
86657306 GTGCGGGAGCGTTGGGCACCATCGGTAACTTAGGCCCCTGGTT
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTTGGAT
* * * ** * *
86657349 GTGCAGGAGCCTCGAGTACCATCAGTAACCTAGG-CCTT-GAT
1 GTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTTGGAT
* * * * * *
86657390 CGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCTT-GAT
1 -GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
* * * * *
86657432 CGTGCGAGAACCTCGAGCACCATCGGCAACCTAGG-CCTT-GAT
1 -GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
** * * * * **
86657474 CGTGCAAGAACCTCGGGCACCATCGGCAACCTCGGCCCTTGG-T
1 -GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
*
86657517 CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT
1 -GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTTGGAT
* *
86657561 GTGCCGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* * * *
86657603 GTGCGGGAGCCTCGATCAGTATTGGCACCTTGGTGCTTAGAT
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* * * *
86657645 GTGCGGGAGCCTCG-GACACCATCGACAACCTAGG-ACATTGGAT
1 GTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTGC-TTGGAT
* ** * * *
86657688 GTGCGGGTGCCTCGAGCAGCAGGGGTACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGAT
86657731 GTGCGGG
1 GTGCGGG
86657738 CTAAAGAAAA
Statistics
Matches: 457, Mismatches: 82, Indels: 37
0.79 0.14 0.06
Matches are distributed among these distances:
41 28 0.06
42 265 0.58
43 156 0.34
44 8 0.02
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.20
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
Found at i:86665639 original size:58 final size:58
Alignment explanation
Indices: 86665574--86665693 Score: 204
Period size: 58 Copynumber: 2.1 Consensus size: 58
86665564 CCCTCCCCAA
* *
86665574 TCCCAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
86665632 TCCCAAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
86665690 TCCC
1 TCCC
86665694 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (58 bp):
TCCCAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:86675424 original size:29 final size:29
Alignment explanation
Indices: 86675390--86675467 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
86675380 GTGACGAGAT
* *
86675390 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
86675419 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
86675448 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
86675468 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:86680002 original size:17 final size:17
Alignment explanation
Indices: 86679980--86680013 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
86679970 ATTGCCTAAT
86679980 GATGGTGGAAATGGACC
1 GATGGTGGAAATGGACC
86679997 GATGGTGGAAATGGACC
1 GATGGTGGAAATGGACC
86680014 CAAAAAGTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.41, T:0.18
Consensus pattern (17 bp):
GATGGTGGAAATGGACC
Found at i:86680897 original size:54 final size:55
Alignment explanation
Indices: 86680779--86680898 Score: 138
Period size: 55 Copynumber: 2.2 Consensus size: 55
86680769 GTGTCCTCAC
* * *
86680779 CCGTGTAACCCTCTAAGTAGGGTCACACGGTCGTGTCACATGCCCATGTGCCAAG
1 CCGTGTAACTCTCTAAGTAGGCTCACACGGTCGTGTCACAAGCCCATGTGCCAAG
* * * *
86680834 CCATGTAACTCTCTAAGTTGGCTCACAC-GTCTGTGTGCA-AAG-CCATGTGCTAGG
1 CCGTGTAACTCTCTAAGTAGGCTCACACGGTC-GTGT-CACAAGCCCATGTGCCAAG
86680888 CCGTGTAACTC
1 CCGTGTAACTC
86680899 ACTGACTTGC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
54 23 0.42
55 30 0.55
56 2 0.04
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (55 bp):
CCGTGTAACTCTCTAAGTAGGCTCACACGGTCGTGTCACAAGCCCATGTGCCAAG
Found at i:86685287 original size:68 final size:68
Alignment explanation
Indices: 86685215--86685366 Score: 177
Period size: 67 Copynumber: 2.2 Consensus size: 68
86685205 CATCATGTGT
* * *
86685215 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGACACCA
86685278 TGTAG
64 TGTAG
* * * *
86685283 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGGGTGATACCA-GTGAAGGACACCAT
86685346 GTAG
65 GTAG
*
86685350 ACAATAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
86685367 TAAACTGGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 3 0.04
67 26 0.37
68 15 0.21
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGGGTGATACCAGTGAAGGACACCATG
TAG
Found at i:86694914 original size:36 final size:36
Alignment explanation
Indices: 86694863--86694932 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 36
86694853 ATATTCCAAC
*
86694863 CGAAACACACTAGATGCTCATAAGA-GCTAATCCATT
1 CGAAACACACCAGATGCTCATAAGAGGC-AATCCATT
*
86694899 CGAAACATACCAGATGCTCATAAGAGGCAATCCA
1 CGAAACACACCAGATGCTCATAAGAGGCAATCCA
86694933 CCCAATAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 29 0.94
37 2 0.06
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.19
Consensus pattern (36 bp):
CGAAACACACCAGATGCTCATAAGAGGCAATCCATT
Found at i:86697773 original size:10 final size:10
Alignment explanation
Indices: 86697760--86697805 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
86697750 AGCTCACTTG
86697760 AGCTCGTTTT
1 AGCTCGTTTT
*
86697770 AGCTCGTTTG
1 AGCTCGTTTT
*
86697780 AGCTCGAATTT
1 AGCTCG-TTTT
*
86697791 AGCTCGTTTC
1 AGCTCGTTTT
86697801 AGCTC
1 AGCTC
86697806 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:86697793 original size:21 final size:20
Alignment explanation
Indices: 86697757--86697805 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
86697747 ATCAGCTCAC
*
86697757 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
86697777 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
86697798 TTCAGCTC
1 TTGAGCTC
86697806 ATTCCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:86698048 original size:13 final size:13
Alignment explanation
Indices: 86698030--86698058 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
86698020 AATAGTTGTG
86698030 TGTTATTTAATTA
1 TGTTATTTAATTA
86698043 TGTTATTTAATTA
1 TGTTATTTAATTA
86698056 TGT
1 TGT
86698059 AGGTTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:86700188 original size:17 final size:17
Alignment explanation
Indices: 86700145--86700200 Score: 67
Period size: 17 Copynumber: 3.0 Consensus size: 17
86700135 TCAGTTGAGA
86700145 GAAAAAGAAAAGAATGAATGT
1 GAAAAAGAAAAGAA--AA--T
86700166 GAAAAAAGAAAAGAAAAT
1 G-AAAAAGAAAAGAAAAT
86700184 GAAAAAGAAAAGAAAAT
1 GAAAAAGAAAAGAAAAT
86700201 CAAGAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 16 0.47
18 2 0.06
20 2 0.06
21 1 0.03
22 13 0.38
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09
Consensus pattern (17 bp):
GAAAAAGAAAAGAAAAT
Found at i:86704720 original size:24 final size:24
Alignment explanation
Indices: 86704693--86704770 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
86704683 AAGGCTGTCA
*
86704693 GGAGAAGATTTGGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
86704717 GGAGAGGATTTAGGAGCTAATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
86704741 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
86704765 GGAGAA
1 GGAGAA
86704771 CGGTGTTGGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:86706244 original size:27 final size:26
Alignment explanation
Indices: 86706216--86706314 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
86706206 GGTGGCTATG
* *
86706216 CCACAATTATCTGATCTGGTGGCACTG
1 CCAC-ATTATCTGTTCTGGTGGCACTA
**
86706243 CCACATATATCTGTTCTGGTGGCTTTA
1 CCACAT-TATCTGTTCTGGTGGCACTA
* *
86706270 CCACAATTATCTGTTGTGGTGACACTA
1 CCAC-ATTATCTGTTCTGGTGGCACTA
*
86706297 TCACATTATCTGTTCTGG
1 CCACATTATCTGTTCTGG
86706315 CGGCCATGCT
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 15 0.25
27 43 0.72
28 2 0.03
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (26 bp):
CCACATTATCTGTTCTGGTGGCACTA
Found at i:86706290 original size:54 final size:53
Alignment explanation
Indices: 86706204--86706314 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
86706194 AGGAAGCGTC
* * *
86706204 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACACTACCACAT-TATCTGTT
* * * *
86706258 CTGGTGGCTTTACCACAATTATCTGTTGTGGTGACACTATCACATTATCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACACTACCACATTATCTGTT
86706311 CTGG
1 CTGG
86706315 CGGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACACTACCACATTATCTGTT
Found at i:86707460 original size:55 final size:54
Alignment explanation
Indices: 86707321--86707527 Score: 220
Period size: 53 Copynumber: 3.8 Consensus size: 54
86707311 TTCCTTTTTA
* * *
86707321 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
86707374 AACTCACCATTGCCATG-CTTTAGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGA-CATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
86707428 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACAAGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
86707483 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
86707528 AAGCCCTAAT
Statistics
Matches: 123, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.33
54 37 0.30
55 37 0.30
56 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:86718755 original size:46 final size:46
Alignment explanation
Indices: 86718672--86718885 Score: 204
Period size: 46 Copynumber: 4.6 Consensus size: 46
86718662 AAGTTGATTC
* *
86718672 CATGTCCAAGACATGGTCTTACACT-G-ACTATCATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCAC--TCGTCTCG-AGGCCGATG
* * * * *
86718719 CTTGTCCCAAACATGTCTTATACTGGC-TTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCGAGGCCGATG
*
86718765 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAGGCCGATG
* * * * *
86718811 CCATGTCCCAGACATGGTCTTACACTTGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCACTCGT-CTCGAGGCCGATG
86718859 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
86718886 TCACAATAAC
Statistics
Matches: 140, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 72 0.51
47 41 0.29
48 24 0.17
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAGGCCGATG
Found at i:86719263 original size:30 final size:30
Alignment explanation
Indices: 86719223--86719280 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
86719213 AATTCACATC
* *
86719223 TTTGATAAAATGACCATTTTACCCCTAGAT
1 TTTGACAAAATAACCATTTTACCCCTAGAT
86719253 TTTGACAAAATAACCATTTTACCCCTAG
1 TTTGACAAAATAACCATTTTACCCCTAG
86719281 GTCTGGAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (30 bp):
TTTGACAAAATAACCATTTTACCCCTAGAT
Found at i:86725481 original size:27 final size:26
Alignment explanation
Indices: 86725459--86725510 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
86725449 AAAGCCCGTT
* *
86725459 ACAATATCATTTGGGTCATAGCCCATA
1 ACAAAATCAATTGGG-CATAGCCCATA
*
86725486 ACAAAATCAATTGGGCCTAGCCCAT
1 ACAAAATCAATTGGGCATAGCCCAT
86725511 CTTAGCCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
ACAAAATCAATTGGGCATAGCCCATA
Found at i:86725552 original size:11 final size:11
Alignment explanation
Indices: 86725536--86725563 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
86725526 GTCGAAACCC
86725536 ATATCACAATA
1 ATATCACAATA
86725547 ATATCACAATA
1 ATATCACAATA
86725558 ATATCA
1 ATATCA
86725564 TACATGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (11 bp):
ATATCACAATA
Found at i:86726463 original size:20 final size:18
Alignment explanation
Indices: 86726438--86726474 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
86726428 ATTGCTAAGT
86726438 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
86726458 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
86726475 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:86729777 original size:46 final size:45
Alignment explanation
Indices: 86729674--86729945 Score: 185
Period size: 46 Copynumber: 5.9 Consensus size: 45
86729664 AGATTTGTGT
* * * * *
86729674 GCCAGTGTAAGACCATGTATGGGACATGGCATC-GGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA--CAGATGAGA
* *
86729722 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGA
* * **
86729768 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGA
* * * * * *
86729814 GCCAATGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GA
* * * * * *
86729858 GCTAGTGTAAGACATGTCTGGGACATGCGTCAG-CACGGTTACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGAT-GA-GA
* * *
86729904 GTCAGTGTAAGACCTGTCTGGGACATGGCATC-GACACAGATG
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCAGCCACAGATG
86729946 GATGAGAGCT
Statistics
Matches: 180, Mismatches: 35, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
43 3 0.02
44 32 0.18
45 2 0.01
46 106 0.59
47 26 0.14
48 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGA
Found at i:86729828 original size:92 final size:90
Alignment explanation
Indices: 86729674--86729885 Score: 228
Period size: 92 Copynumber: 2.3 Consensus size: 90
86729664 AGATTTGTGT
* * * * *
86729674 GCCAGTGTAAGACCATGTATGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGAGAGCCAATGTAAGACATGT
86729739 CTAGGACATGCATCAGCCAC-AGTATGAGA
64 CTAGGACATGCATCAGCCACGAG-AT--GA
* * ** *
86729768 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTAGCCAATGTCAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGAGCCAATGTAAGACATGTCT
* * * * *
86729833 GGGACATGCGTCGGCTACGAGATGT
66 AGGACATGCATCAGCCACGAGATGA
*
86729858 GCTAGTGTAAGACATGTCTGGGACATGC
1 GCCAGTGTAAGACATGTCTGGGACATGC
86729886 GTCAGCACGG
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
90 28 0.28
92 46 0.46
93 15 0.15
94 12 0.12
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (90 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGAGCCAATGTAAGACATGTCT
AGGACATGCATCAGCCACGAGATGA
Found at i:86732706 original size:20 final size:18
Alignment explanation
Indices: 86732681--86732717 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
86732671 ATTGCTAAGT
86732681 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
86732701 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
86732718 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:86735542 original size:27 final size:27
Alignment explanation
Indices: 86735512--86735587 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
86735502 GGAAAAATAG
*
86735512 TCATTTTACCCTACAAGGGTATGTCAA
1 TCATTTTACACTACAAGGGTATGTCAA
* * *
86735539 TCATTTTACACTACAAGGGTATTTTAG
1 TCATTTTACACTACAAGGGTATGTCAA
*
86735566 TAATTTTACACTACAAGGGTAT
1 TCATTTTACACTACAAGGGTAT
86735588 TTCGATAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (27 bp):
TCATTTTACACTACAAGGGTATGTCAA
Found at i:86735588 original size:27 final size:27
Alignment explanation
Indices: 86735552--86735873 Score: 294
Period size: 27 Copynumber: 12.0 Consensus size: 27
86735542 TTTTACACTA
*
86735552 CAAGGGTATTTTAGTAATTTTAC-ACT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* *
86735578 ACAAGGGTA-TTTCGATAAATTTACAAAT
1 -CAAGGGTATTTTAG-TAATTTTACAAAT
** * * *
86735606 CGGGGGTGTTTTGGTAATTTTACAATT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* **
86735633 CGAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * * * *
86735660 TAAGGGTATCTCAATAATTTTTCAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* *
86735687 CGAGGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * *
86735714 CAAGGGTGTTTTGGTAATTTCACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* *
86735741 CAAGGGTATTTTGGTAATTTTACTAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* * *
86735768 CGAGGGTATTTCAGTAATTTCAC-AAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
86735794 CAAGGGTATTTTAGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
*
86735821 CAGGGGTATTTT-GATAATTTTACAAATT
1 CAAGGGTATTTTAG-TAATTTTACAAA-T
* * **
86735849 GAA-GGTGTTTCGGTAATTTTACAAA
1 CAAGGGTATTTTAGTAATTTTACAAA
86735874 CTGGGGTATT
Statistics
Matches: 244, Mismatches: 44, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
26 28 0.11
27 207 0.85
28 9 0.04
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAT
Found at i:86735601 original size:54 final size:54
Alignment explanation
Indices: 86735509--86735844 Score: 254
Period size: 54 Copynumber: 6.2 Consensus size: 54
86735499 AAGGGAAAAA
* * * * * *
86735509 TAGTCATTTTACCCTACAAGGGTATGTCAATCATTTTAC-ACTACAAGGGTATTT
1 TAGTAATTTTACACTACAAGGGTATTTCGATAATTTTACAAAT-CAAGGGTATTT
* ** *
86735563 TAGTAATTTTACACTACAAGGGTATTTCGATAAATTTACAAATCGGGGGTGTTT
1 TAGTAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTT
* * * * * * *
86735617 TGGTAATTTTACAATTCGAGGGTATTTCGGTAATTTTACAAATTAAGGGTATCT
1 TAGTAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTT
* * * * * *
86735671 CAATAATTTTTCA-AATCGAGGGTATTTC-AGTAATTTTACAAATCAAGGGTGTTT
1 TAGTAATTTTACACTA-CAAGGGTATTTCGA-TAATTTTACAAATCAAGGGTATTT
* * * * * * *
86735725 TGGTAATTTCACA-AATCAAGGGTATTTTGGTAATTTTACTAATCGAGGGTATTT
1 TAGTAATTTTACACTA-CAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTT
* * * * *
86735779 CAGTAATTTCACAAT-CAAGGGTATTT-TAGTAATTTTACAAATCAGGGGTATTT
1 TAGTAATTTTACACTACAAGGGTATTTCGA-TAATTTTACAAATCAAGGGTATTT
86735832 T-GATAATTTTACA
1 TAG-TAATTTTACA
86735845 AATTGAAGGT
Statistics
Matches: 223, Mismatches: 52, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
52 1 0.00
53 41 0.18
54 179 0.80
55 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.39
Consensus pattern (54 bp):
TAGTAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTT
Found at i:86735639 original size:81 final size:80
Alignment explanation
Indices: 86735527--86735872 Score: 379
Period size: 81 Copynumber: 4.3 Consensus size: 80
86735517 TTACCCTACA
* * * * *
86735527 AGGGTATGTCAATCATTTTACACTACAAGGGTATTTTAGTAATTTTAC-ACTACAAGGGTATTTC
1 AGGGTATTTCAGTAATTTTACAAT-CAAGGGTATTTTAGTAATTTTACAAAT-CAAGGGTATTTC
*
86735591 GATAAATTTACAAATCG
64 GATAATTTTACAAATCG
* * ** * ** * * *
86735608 GGGGTGTTTTGGTAATTTTACAATTCGAGGGTATTTCGGTAATTTTACAAATTAAGGGTATCTCA
1 AGGGTATTTCAGTAATTTTACAA-TCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCG
*
86735673 ATAATTTTTCAAATCG
65 ATAATTTTACAAATCG
* * * *
86735689 AGGGTATTTCAGTAATTTTACAAATCAAGGGTGTTTTGGTAATTTCACAAATCAAGGGTATTTTG
1 AGGGTATTTCAGTAATTTTAC-AATCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCG
* *
86735754 GTAATTTTACTAATCG
65 ATAATTTTACAAATCG
* * *
86735770 AGGGTATTTCAGTAATTTCACAATCAAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGA
1 AGGGTATTTCAGTAATTTTACAATCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGA
*
86735835 TAATTTTACAAATTG
66 TAATTTTACAAATCG
* * *
86735850 AAGGTGTTTCGGTAATTTTACAA
1 AGGGTATTTCAGTAATTTTACAA
86735873 ACTGGGGTAT
Statistics
Matches: 218, Mismatches: 44, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
80 71 0.33
81 142 0.65
82 5 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACAATCAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGA
TAATTTTACAAATCG
Found at i:86736228 original size:28 final size:28
Alignment explanation
Indices: 86736151--86736258 Score: 137
Period size: 28 Copynumber: 3.9 Consensus size: 28
86736141 ATCCACACTT
* * *
86736151 ATTCATTTGGCCCCTTTAGGCCCAATCTC
1 ATTCATATGG-CCCATTAGGCCCAATCAC
* * *
86736180 GTTCACATGG-CCATTAGGCCCGATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
*
86736207 ATTCATATGGCCCATCAGGCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
86736235 ATTCATATGGCCCATTAGGCCCAA
1 ATTCATATGGCCCATTAGGCCCAA
86736259 CTACTTCCCA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
27 22 0.33
28 38 0.57
29 7 0.10
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (28 bp):
ATTCATATGGCCCATTAGGCCCAATCAC
Found at i:86739725 original size:9 final size:9
Alignment explanation
Indices: 86739711--86739737 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
86739701 CAGTTGTACC
86739711 TTCAACTCT
1 TTCAACTCT
86739720 TTCAACTCT
1 TTCAACTCT
86739729 TTCAACTCT
1 TTCAACTCT
86739738 GTTGGGGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.44
Consensus pattern (9 bp):
TTCAACTCT
Found at i:86746117 original size:29 final size:29
Alignment explanation
Indices: 86746016--86746109 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
86746006 GTGACGAGAT
86746016 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
86746045 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
86746074 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
86746103 CGGCACT
1 TGGCACT
86746110 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:86746134 original size:58 final size:58
Alignment explanation
Indices: 86746012--86746146 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
86746002 TACGGTGACG
* *
86746012 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
86746069 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
86746127 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
86746147 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:86757123 original size:49 final size:48
Alignment explanation
Indices: 86757060--86757189 Score: 138
Period size: 49 Copynumber: 2.6 Consensus size: 48
86757050 GCACATCAAA
* *
86757060 GTCGATGCCATGTCCAAGACAGGTTTTACACTGACTTTCATATATCGAG-
1 GTCGATGCCATGTCC-AGACAGGTCTTACACTGACTCTCATATATCG-GT
* ** * *
86757109 G-CTGATGCCGTGTCCCAGACATATCTTACACTGGCTCTCATCTATCGGT
1 GTC-GATGCCATGT-CCAGACAGGTCTTACACTGACTCTCATATATCGGT
86757158 GTCGATGCCATGTACCAGACAGGTCTTACACT
1 GTCGATGCCATGT-CCAGACAGGTCTTACACT
86757190 CACACACAAC
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
48 2 0.03
49 61 0.92
50 3 0.05
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
GTCGATGCCATGTCCAGACAGGTCTTACACTGACTCTCATATATCGGT
Found at i:86758982 original size:27 final size:28
Alignment explanation
Indices: 86758924--86758986 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
86758914 CAAAACAATC
*
86758924 ATTTTACCCTACAAGGGTATTTTCGGTA
1 ATTTTACACTACAAGGGTATTTTCGGTA
*
86758952 ATTTTACACTGCAAGGGTA-TTTCGGTA
1 ATTTTACACTACAAGGGTATTTTCGGTA
86758979 ATTTTACA
1 ATTTTACA
86758987 AACCGGGGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
27 16 0.48
28 17 0.52
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (28 bp):
ATTTTACACTACAAGGGTATTTTCGGTA
Found at i:86764306 original size:39 final size:40
Alignment explanation
Indices: 86764259--86764403 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
86764249 AATGTTCGAG
86764259 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
86764298 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTA
* ** *
86764338 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
86764378 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
86764404 GTTTGAACGA
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 33 0.37
40 41 0.46
41 15 0.17
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:86771004 original size:39 final size:40
Alignment explanation
Indices: 86770953--86771097 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
86770943 AATGTTCGAG
*
86770953 TGATATCTGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
86770992 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAAATTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTA
* * ** *
86771032 TGATATCCGGGTTAAGTCCCGAAAGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
86771072 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
86771098 GTTTGAACGA
Statistics
Matches: 86, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 32 0.37
40 40 0.47
41 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:86772724 original size:17 final size:18
Alignment explanation
Indices: 86772702--86772735 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86772692 ATCTGTGCGA
86772702 GGCCCAC-TAGCCCATTG
1 GGCCCACATAGCCCATTG
*
86772719 GGCCCACATGGCCCATT
1 GGCCCACATAGCCCATT
86772736 TAGCCCAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.18
Consensus pattern (18 bp):
GGCCCACATAGCCCATTG
Found at i:86781806 original size:40 final size:40
Alignment explanation
Indices: 86781644--86781845 Score: 157
Period size: 40 Copynumber: 5.1 Consensus size: 40
86781634 CGAATGATGT
*
86781644 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
86781684 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
86781723 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
86781761 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * *
86781802 CCGGGCTTCGTCCCGAAGGCATTTGAGCAAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
86781842 CCGG
1 CCGG
86781846 TTAAATTCCG
Statistics
Matches: 130, Mismatches: 24, Indels: 16
0.76 0.14 0.09
Matches are distributed among these distances:
38 24 0.18
39 19 0.15
40 78 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:86781808 original size:78 final size:78
Alignment explanation
Indices: 86781643--86781794 Score: 198
Period size: 78 Copynumber: 1.9 Consensus size: 78
86781633 TCGAATGATG
* * *
86781643 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGC-AAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
86781708 GTGCGAGTTAATAAA
64 GTGCAAGTCAATAAA
* **
86781723 TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTCG
1 TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTCG
86781787 TGCAAGTC
65 TGCAAGTC
86781795 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGT
GCAAGTCAATAAA
Found at i:86784764 original size:6 final size:6
Alignment explanation
Indices: 86784753--86784780 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
86784743 ATTGTCTGCC
86784753 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
86784781 GGGTTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTCT
Found at i:86788653 original size:18 final size:19
Alignment explanation
Indices: 86788611--86788650 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
86788601 CAAATGTTGG
*
86788611 ATTCTGGTACAATCAATAT
1 ATTCTCGTACAATCAATAT
86788630 ATTCTCGTAC-ATCAATCAT
1 ATTCTCGTACAATCAAT-AT
86788649 AT
1 AT
86788651 CTCATCTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (19 bp):
ATTCTCGTACAATCAATAT
Found at i:86794440 original size:24 final size:24
Alignment explanation
Indices: 86794404--86794490 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
86794394 AATCTCAAAT
86794404 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
86794428 GCACTATGGGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
86794452 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
86794476 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
86794491 ACATAATAAG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:86794456 original size:48 final size:48
Alignment explanation
Indices: 86794404--86794512 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
86794394 AATCTCAAAT
** *
86794404 GCACTATGTGTGCGATTTACTATGGCACTATGGGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGGGTGCGAACATAATA-A
*
86794452 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGGGTGCGAACATAATAA
86794500 GCACTATGTGTGC
1 GCACTATGTGTGC
86794513 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGGGTGCGAACATAATAA
Found at i:86796763 original size:39 final size:39
Alignment explanation
Indices: 86796709--86796818 Score: 157
Period size: 39 Copynumber: 2.8 Consensus size: 39
86796699 AATGTTCGAG
86796709 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGCTA
* * * *
86796748 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGCTA
* *
86796787 TGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGT
86796819 ATGGGTTACC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 49 0.78
40 14 0.22
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGCTA
Found at i:86799348 original size:38 final size:38
Alignment explanation
Indices: 86799282--86799373 Score: 132
Period size: 38 Copynumber: 2.4 Consensus size: 38
86799272 ATGTCCAAAC
*
86799282 TATGACATAATTAAAAACTCTTACTAATGATGTTCAGA-T
1 TATGACATAATT-AAAACTCATACTAATGATGTTCA-ATT
*
86799321 TATGACATAATTAAAACTCATATTAATGATGTTCAATT
1 TATGACATAATTAAAACTCATACTAATGATGTTCAATT
*
86799359 TATGATATAATTAAA
1 TATGACATAATTAAA
86799374 GACTTAAACT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
37 1 0.02
38 36 0.73
39 12 0.24
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (38 bp):
TATGACATAATTAAAACTCATACTAATGATGTTCAATT
Found at i:86805886 original size:38 final size:38
Alignment explanation
Indices: 86805806--86805919 Score: 149
Period size: 38 Copynumber: 2.9 Consensus size: 38
86805796 AAAACAAGTT
* * *
86805806 TTAAAGATGTCCAAACTATGACATAATTGAAAACTCT-TA
1 TTAATGATGTTCAAATTATGACATAATT-AAAACT-TATA
*
86805845 TTAATGATGTTCAGATTATGACATAATTAAAACTTATA
1 TTAATGATGTTCAAATTATGACATAATTAAAACTTATA
*
86805883 TTAATGATGTTCAAATTATGATATAATTAAAGACTTA
1 TTAATGATGTTCAAATTATGACATAATTAAA-ACTTA
86805920 AACTAAATTA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.01
38 37 0.55
39 29 0.43
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.37
Consensus pattern (38 bp):
TTAATGATGTTCAAATTATGACATAATTAAAACTTATA
Found at i:86810158 original size:17 final size:18
Alignment explanation
Indices: 86810125--86810158 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86810115 ACCTACGCAC
86810125 TAAGCACAAAACATAAGT
1 TAAGCACAAAACATAAGT
*
86810143 TAAGCA-AAAACTTAAG
1 TAAGCACAAAACATAAG
86810159 CAAGATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.18
Consensus pattern (18 bp):
TAAGCACAAAACATAAGT
Found at i:86815842 original size:46 final size:46
Alignment explanation
Indices: 86815792--86815961 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
86815782 TTGAGCATCT
*
86815792 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* * * *
86815838 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCC
* * * *
86815885 GAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
*
86815931 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86815962 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:86815945 original size:93 final size:93
Alignment explanation
Indices: 86815786--86815956 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
86815776 GGATGGTTGA
* * *
86815786 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
86815851 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
86815879 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
86815944 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
86815957 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86816223 original size:19 final size:20
Alignment explanation
Indices: 86816186--86816223 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
86816176 ATAAGGTGGT
86816186 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
86816206 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
86816224 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:86821952 original size:31 final size:31
Alignment explanation
Indices: 86821917--86821981 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
86821907 CAGAGAGCTC
86821917 CACGGGCAAGGCACACAGTCGTGTGTTCAGA
1 CACGGGCAAGGCACACAGTCGTGTGTTCAGA
*
86821948 CACGGGCAAGGCACATAGTCGTGTGTTCAGA
1 CACGGGCAAGGCACACAGTCGTGTGTTCAGA
86821979 CAC
1 CAC
86821982 ATGAGCGTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.26, C:0.26, G:0.31, T:0.17
Consensus pattern (31 bp):
CACGGGCAAGGCACACAGTCGTGTGTTCAGA
Found at i:86822344 original size:21 final size:21
Alignment explanation
Indices: 86822318--86822367 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 21
86822308 CACATCCCTA
86822318 TCCCCTTTATCTATT-T-TTCTT
1 TCCCCTTT-TCT-TTCTCTTCTT
86822339 TCCCCTTTTCTTTCTCTTCTT
1 TCCCCTTTTCTTTCTCTTCTT
86822360 TCCTCCTT
1 TCC-CCTT
86822368 CTTTAGTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 2 0.08
20 4 0.15
21 16 0.62
22 4 0.15
ACGTcount: A:0.04, C:0.36, G:0.00, T:0.60
Consensus pattern (21 bp):
TCCCCTTTTCTTTCTCTTCTT
Found at i:86822602 original size:17 final size:17
Alignment explanation
Indices: 86822559--86822602 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
86822549 AGTCCATTTA
*
86822559 TTTTCACTTTGTTTTTC
1 TTTTCATTTTGTTTTTC
*
86822576 TTTTCCTTTTGTTTTTC
1 TTTTCATTTTGTTTTTC
*
86822593 TTTTTATTTT
1 TTTTCATTTT
86822603 CATTTTTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.05, C:0.14, G:0.05, T:0.77
Consensus pattern (17 bp):
TTTTCATTTTGTTTTTC
Found at i:86824542 original size:2 final size:2
Alignment explanation
Indices: 86824535--86824564 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
86824525 GCTTCGCCAC
86824535 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86824565 CTGTTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86830012 original size:39 final size:39
Alignment explanation
Indices: 86829958--86830110 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
86829948 TGAATGTCGA
*
86829958 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
86829997 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
86830036 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
86830075 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
86830111 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:86830126 original size:40 final size:39
Alignment explanation
Indices: 86829959--86830140 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
86829949 GAATGTCGAG
* *
86829959 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
86829998 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
86830037 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
86830076 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
86830116 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
86830141 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:86837970 original size:39 final size:39
Alignment explanation
Indices: 86837916--86838068 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
86837906 GAATGTCGAA
*
86837916 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
86837955 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
86837994 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
86838033 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
86838069 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:86838084 original size:40 final size:39
Alignment explanation
Indices: 86837917--86838098 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
86837907 AATGTCGAAG
* *
86837917 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
86837956 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
86837995 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
86838034 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
86838074 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
86838099 TGTTTGAACG
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:86846865 original size:29 final size:29
Alignment explanation
Indices: 86846832--86846934 Score: 161
Period size: 29 Copynumber: 3.6 Consensus size: 29
86846822 CCTTCGAGCT
** * *
86846832 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
86846861 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86846890 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
86846919 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
86846935 ATCTCGTCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:86846866 original size:58 final size:58
Alignment explanation
Indices: 86846803--86846934 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
86846793 AATTTAAGCC
* * * * * *
86846803 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * **
86846861 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
86846919 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
86846935 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:86856108 original size:42 final size:42
Alignment explanation
Indices: 86855984--86856112 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 42
86855974 TTTTCTTTAG
*
86855984 CCCGCACATCCGAGGCATCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCC-AGGCATCAAGGTGCCGATGGTGCCTGAGGCT
* * * * * * *
86856027 CCAGTACGATCAAGGGC-TTAAGTTACCGATGGTGTCTGAGGCT
1 CCCGCAC-ATCCA-GGCATCAAGGTGCCGATGGTGCCTGAGGCT
*
86856070 CCCGCACATCCAGGCACCAAGGTGCCGATGGTGCCTGAGGCT
1 CCCGCACATCCAGGCATCAAGGTGCCGATGGTGCCTGAGGCT
86856112 C
1 C
86856113 TCGTACGACC
Statistics
Matches: 67, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
41 3 0.04
42 26 0.39
43 32 0.48
44 6 0.09
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (42 bp):
CCCGCACATCCAGGCATCAAGGTGCCGATGGTGCCTGAGGCT
Found at i:86856128 original size:85 final size:86
Alignment explanation
Indices: 86855984--86856151 Score: 241
Period size: 85 Copynumber: 2.0 Consensus size: 86
86855974 TTTTCTTTAG
* * *
86855984 CCCGCACATCCGAGGCATCAAGGTGCCGATGGTGCCCGAGGCTCCAGTACGATCAAGGGCTTAAG
1 CCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCAGTACGACCAAGGGCCTAAG
*
86856049 TTACCGATGGTGTCTGAGGCT
66 TTACCGATGGTGCCTGAGGCT
* *
86856070 CCCGCACATCC-AGGCACCAAGGTGCCGATGGTGCCTGAGGCTCTC-GTACGACCAAGGGCCTAG
1 CCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCTC-CAGTACGACCAAGGGCCTAA
* *
86856133 GTTGCTGATGGTGCCTGAG
65 GTTACCGATGGTGCCTGAG
86856152 TGTGACAGCC
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
85 61 0.84
86 12 0.16
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (86 bp):
CCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCAGTACGACCAAGGGCCTAAG
TTACCGATGGTGCCTGAGGCT
Found at i:86856147 original size:43 final size:42
Alignment explanation
Indices: 86856007--86856151 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 42
86855997 GGCATCAAGG
* * * *
86856007 TGCCGATGGTGCCCGAGGCTCCAGTACGATCAAGGGCTTAAGT
1 TGCCGATGGTGCCTGAGGCTCC-GTACGACCAAGGGCCTAGGT
* * * * *
86856050 TACCGATGGTGTCTGAGGCTCCCGCAC-ATCC-AGGCACCAAGG-
1 TGCCGATGGTGCCTGAGGCT-CCGTACGA-CCAAGG-GCCTAGGT
86856092 TGCCGATGGTGCCTGAGGCTCTCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCTGAGGCTC-CGTACGACCAAGGGCCTAGGT
*
86856135 TGCTGATGGTGCCTGAG
1 TGCCGATGGTGCCTGAG
86856152 TGTGACAGCC
Statistics
Matches: 80, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
41 1 0.01
42 33 0.41
43 44 0.55
44 2 0.03
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (42 bp):
TGCCGATGGTGCCTGAGGCTCCGTACGACCAAGGGCCTAGGT
Found at i:86858265 original size:39 final size:39
Alignment explanation
Indices: 86858211--86858322 Score: 163
Period size: 39 Copynumber: 2.9 Consensus size: 39
86858201 CAGTGATGTT
86858211 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
* *
86858250 TATCCGGACTTAGGGTGC-GCAAGCTATGTGCTAGAATTA
1 TATCCGGACTTAGGGT-CTGCAGGCTATGTGCTGGAATTA
* * *
86858289 TAACCGGACTTAAGGTCTGCAGGCTACGTGCTGG
1 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGG
86858323 TAATATGTCT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
38 1 0.02
39 62 0.97
40 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
Found at i:86859490 original size:52 final size:52
Alignment explanation
Indices: 86859408--86859515 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
86859398 CATGTAGTGT
*
86859408 TAAT-ACGATAGTGTGATGATTTCTGACAGTTAAAAATGTGTTTCTGTATAG
1 TAATGACGATAGTGTGATGATTTCTGACAGTTAAAAATGTGTTTCTATATAG
*
86859459 TAATGACGATAGTGTGATGATTTCTGACAGTTAAAAATGTGTTTTTATATAG
1 TAATGACGATAGTGTGATGATTTCTGACAGTTAAAAATGTGTTTCTATATAG
86859511 TAATG
1 TAATG
86859516 GATCCCAATC
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 4 0.07
52 50 0.93
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40
Consensus pattern (52 bp):
TAATGACGATAGTGTGATGATTTCTGACAGTTAAAAATGTGTTTCTATATAG
Found at i:86866284 original size:39 final size:39
Alignment explanation
Indices: 86866230--86866380 Score: 221
Period size: 39 Copynumber: 3.9 Consensus size: 39
86866220 CAGTGATGGT
* *
86866230 TATCCGAACTTAGGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
86866269 TATCCTGACTTAGGGTCCGCAGGCTATGTGCTTGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
86866308 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
86866347 TAACCGGACTTAAGGTCTGTAGGCTACGTGCTGG
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGG
86866381 TAATATGTCC
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 101 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:86866406 original size:78 final size:78
Alignment explanation
Indices: 86866230--86866410 Score: 195
Period size: 78 Copynumber: 2.3 Consensus size: 78
86866220 CAGTGATGGT
* ** * * * *
86866230 TATCCGAACTTAGGGTCCGTAGGCTATGTGCTGGAATTATATCCTGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
* *
86866295 TGTGCTTGAATTA
66 CGTGCTGGAATTA
** * *
86866308 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCTGTAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
86866373 CGTGCTGGTAA-TA
66 CGTGCTGG-AATTA
* *
86866386 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAAGT-CCGCAGGCT
86866411 TCGAGCTGGT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
77 4 0.05
78 82 0.93
79 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
CGTGCTGGAATTA
Found at i:86866410 original size:39 final size:39
Alignment explanation
Indices: 86866367--86866449 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
86866357 TAAGGTCTGT
* *
86866367 AGGCTACGTGCTGGTAATATGTCCGGG-CTAAAGTCCCGC
1 AGGCTACGAGCTGGTAATAT-ACCGGGTCTAAAGTCCCGC
* * * *
86866406 AGGCTTCGAGCTGGTATTATACCGGGTTTAAATTCCCGC
1 AGGCTACGAGCTGGTAATATACCGGGTCTAAAGTCCCGC
86866445 AGGCT
1 AGGCT
86866450 TGTACTGGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 5 0.14
39 32 0.86
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (39 bp):
AGGCTACGAGCTGGTAATATACCGGGTCTAAAGTCCCGC
Found at i:86866646 original size:2 final size:2
Alignment explanation
Indices: 86866639--86866668 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
86866629 TCAAAGAAGA
86866639 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86866669 GATTGATGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86867450 original size:43 final size:43
Alignment explanation
Indices: 86867393--86867866 Score: 486
Period size: 43 Copynumber: 11.1 Consensus size: 43
86867383 AGTTACACTA
* *
86867393 AGGCTACTGCACGACCAAGGGCCTAGGTTGCAGATGGTGCCCG
1 AGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
86867436 AGGCTCCTGTACGACCAAGGGCCTAGGCTGCCGATGGTGTCCG
1 AGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
** * * *
86867479 AGGCT-CTCGCAC-ATCCAAGCACCAATG-TGCCGATGGTGGCCG
1 AGGCTCCT-GCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
86867521 AGGCT-CTAGCCCGACCAA-GGCCTAGGTTGCCGATGGTGCACA
1 AGGCTCCT-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
86867563 AGGCT-CTCGTACGACCAAGGGCCTAGGTTGCTGATGGTGCCCG
1 AGGCTCCT-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * * *
86867606 AGGCTCCCGCACGACGAAAGGACTAGGTTGCTGATGGTGCCTG
1 AGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
86867649 AGGCTTCCGTG--CGACCAAGGGCCTAGG-TGTCGATGGTGCCCG
1 AGGC-TCC-TGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
** * * *
86867691 AGGCTCCCACATGACCAAGGGCTTAGGTTACCGATGGTG-CCG
1 AGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
86867733 AGGCTACC-GCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 AGGCT-CCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
86867776 AGGCTCCTACACGACTAAGGGCCTAGGTTGTCGATGGTGCCCA
1 AGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
86867819 AGGCTCCCGCGCGACCAAGGGCCTAAGTTGCCGATGGTG-CCG
1 AGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
86867861 AGGCTC
1 AGGCTC
86867867 TCGCACATCC
Statistics
Matches: 355, Mismatches: 62, Indels: 29
0.80 0.14 0.07
Matches are distributed among these distances:
41 7 0.02
42 132 0.37
43 211 0.59
44 4 0.01
45 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (43 bp):
AGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
Found at i:86867537 original size:85 final size:86
Alignment explanation
Indices: 86867393--86868186 Score: 603
Period size: 85 Copynumber: 9.5 Consensus size: 86
86867383 AGTTACACTA
* *
86867393 AGGCTACT-GCACGACCAAGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCCT-GTACGACCAAGG
1 AGGCT-CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGG
*
86867456 GCCTAGGCTGCCGATGGTGTCCG
65 GCCTAGGTTGCCGATGGTG-CCG
** * * * *
86867479 AGGCTCTCGCAC-ATCCAAGCACCAATG-TGCCGATGGTGGCCGAGGCT-CTAGCCCGACCAA-G
1 AGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGG
*
86867540 GCCTAGGTTGCCGATGGTGCACA
65 GCCTAGGTTGCCGATGGTGC-CG
* * * * *
86867563 AGGCTCTCGTACGACCAAGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCC-CGCACGACGAAAGG
1 AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGGG
* *
86867627 ACTAGGTTGCTGATGGTGCCTG
66 CCTAGGTTGCCGATGGTGCC-G
** * * *
86867649 AGGCT-TCCGTGCGACCAAGGGCCTAGG-TGTCGATGGTGCCCGAGGCTCCCA-CATGACCAAGG
1 AGGCTCT-CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGG
* *
86867711 GCTTAGGTTACCGATGGTGCCG
65 GCCTAGGTTGCCGATGGTGCCG
* *
86867733 AGGCTAC-CGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTA-CACGACTAAGG
1 AGGCT-CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGG
* *
86867796 GCCTAGGTTGTCGATGGTGCCCA
65 GCCTAGGTTGCCGATGGTG-CCG
* * * *
86867819 AGGCTCCCGCGCGACCAAGGGCCTAAGTTGCCGATGGTG-CCGAGGCT-CTCGCAC-ATCCAA--
1 AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGA-CCAAGG
* *
86867879 -CC-A---T---GAT-G-CCTG
65 GCCTAGGTTGCCGATGGTGCCG
* * * * * * * * *
86867891 AGGCTCCT-GCACAACCAAAGGCCTAGTTTGCTGGTGGTGCCCAAGGCTCCCA-CACAACGAAGG
1 AGGCT-CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGG
* * *
86867954 GCTTAGGTTGCTGATGGTGTCTG
65 GCCTAGGTTGCCGATGGTG-CCG
* * *** * * * **
86867977 AGGCTCCCTCAC-ATCCAAGCAACAAAG-TGCCGATGGTGCCCGAGGCTCC-CGCATAACCAAGG
1 AGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGG
* * *
86868039 GCTTAGGGTGTCGATGGTGCCG
65 GCCTAGGTTGCCGATGGTGCCG
* * * * *
86868061 AGGCTCTCGCATGACCAAGAGCCTAGGTTGCCGATGGTGCCTGAGGCTCC-CGTACGACCAAGGG
1 AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGGG
* *
86868125 CCTAGGTTACTGATGGTGCTCG
66 CCTAGGTTGCCGATGGTGC-CG
* * *
86868147 AGGCTCCCGCACGACCAAAGGACTAGGTTGCC-AGTGGTGC
1 AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGA-TGGTGC
86868187 TAAGGCTTTC
Statistics
Matches: 558, Mismatches: 108, Indels: 84
0.74 0.14 0.11
Matches are distributed among these distances:
72 30 0.05
73 14 0.03
74 3 0.01
75 3 0.01
76 1 0.00
77 1 0.00
78 1 0.00
80 1 0.00
81 1 0.00
82 2 0.00
83 4 0.01
84 88 0.16
85 259 0.46
86 150 0.27
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (86 bp):
AGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTAGCACGACCAAGGG
CCTAGGTTGCCGATGGTGCCG
Found at i:86867768 original size:213 final size:212
Alignment explanation
Indices: 86867392--86867865 Score: 561
Period size: 213 Copynumber: 2.2 Consensus size: 212
86867382 GAGTTACACT
* *
86867392 AAGGCTACTGCACGACCAAGGGCCTAGGTTGCAGATGGTGCCCGAGGC-TCCTGTACGACCAAGG
1 AAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGTG-CCGAGGCTTCCTGTACGACCAAGG
* * *
86867456 GCCTAGGCTGCCGATGGTGTCCGAGGCTCTCGCACATCCAAGCACCAATGTGCCGATGGTGGCCG
65 GCCTAGGCTGCCGATGGTGCCCGAGGCTCTCGCACATCCAAGCACCAAGGTACCGATGGTGGCCG
* *
86867521 AGGCTCTAGCCCGACCAAGGCCTAGGTTGCCGATGGTGCACAAGGCTCTCGT-ACGACCAAGGGC
130 AGGCTCTAGCACAACCAAGGCCTAGGTTGCCGATGGTGCACAAGGCTC-C-TAACGACCAAGGGC
86867585 CTAGGTTG-CTGATGGTGCCC
193 CTAGGTTGTC-GATGGTGCCC
* * * * * *
86867605 GAGGCTCCCGCACGACGAAAGGACTAGGTTGCTGATGGTGCCTGAGGCTTCC-GTGCGACCAAGG
1 AAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGTGCC-GAGGCTTCCTGTACGACCAAGG
* ** **
86867669 GCCTAGG-TGTCGATGGTGCCCGAGGCTC-C-CACATGACCAAGGGCTTAGGTTACCGATGGT-G
65 GCCTAGGCTGCCGATGGTGCCCGAGGCTCTCGCACAT--CCAAGCACCAAGG-TACCGATGGTGG
* * * *
86867730 CCGAGGCTAC-CGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTACACGACTAA
127 CCGAGGCT-CTAGCACAACCAA-GGCCTAGGTTGCCGATGGTGCACAAGGCTCCTA-ACGACCAA
86867794 GGGCCTAGGTTGTCGATGGTGCCC
189 GGGCCTAGGTTGTCGATGGTGCCC
* * *
86867818 AAGGCTCCCGCGCGACCAAGGGCCTAAGTTGCCGATGGTGCCGAGGCT
1 AAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGTGCCGAGGCT
86867866 CTCGCACATC
Statistics
Matches: 222, Mismatches: 29, Indels: 21
0.82 0.11 0.08
Matches are distributed among these distances:
210 5 0.02
211 2 0.01
212 53 0.24
213 158 0.71
214 4 0.02
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (212 bp):
AAGGCTCCCGCACGACCAAGGGCCTAGGTTGCAGATGGTGCCGAGGCTTCCTGTACGACCAAGGG
CCTAGGCTGCCGATGGTGCCCGAGGCTCTCGCACATCCAAGCACCAAGGTACCGATGGTGGCCGA
GGCTCTAGCACAACCAAGGCCTAGGTTGCCGATGGTGCACAAGGCTCCTAACGACCAAGGGCCTA
GGTTGTCGATGGTGCCC
Found at i:86867965 original size:43 final size:43
Alignment explanation
Indices: 86867891--86868256 Score: 156
Period size: 43 Copynumber: 8.6 Consensus size: 43
86867881 ATGATGCCTG
** * *
86867891 AGGCTCCTGCACAACCAAAGGCCTAGTTTGCTGGTGGTGCCCA
1 AGGCTCCCACACAACCAAAGGCCTAGGTTGCTGATGGTGCCCA
* * * * **
86867934 AGGCTCCCACACAACGAAGGGCTTAGGTTGCTGATGGTGTCTG
1 AGGCTCCCACACAACCAAAGGCCTAGGTTGCTGATGGTGCCCA
* * * * * *
86867977 AGGCTCCCTCACATCC-AA-GCAACAAAG-TGCCGATGGTGCCCG
1 AGGCTCCCACACAACCAAAGGC--CTAGGTTGCTGATGGTGCCCA
* * * * * *
86868019 AGGCTCCCGCATAACCAAGGGCTTAGGGTG-TCGATGGTG-CCG
1 AGGCTCCCACACAACCAAAGGCCTAGGTTGCT-GATGGTGCCCA
* * ** * **
86868061 AGGCTCTCGCATGACC-AAGAGCCTAGGTTGCCGATGGTGCCTG
1 AGGCTCCCACACAACCAAAG-GCCTAGGTTGCTGATGGTGCCCA
** * * * * *
86868104 AGGCTCCCGTACGACCAAGGGCCTAGGTTACTGATGGTGCTCG
1 AGGCTCCCACACAACCAAAGGCCTAGGTTGCTGATGGTGCCCA
* * * * *
86868147 AGGCTCCCGCACGACCAAAGGACTAGGTTGC-CAGTGGTG-CTA
1 AGGCTCCCACACAACCAAAGGCCTAGGTTGCTGA-TGGTGCCCA
** ** *** * *
86868189 AGGCTTTCACACATGCAACCACCAAGG-TGCTGATGGTGCCCG
1 AGGCTCCCACACAACCAAAGGCCTAGGTTGCTGATGGTGCCCA
* *
86868231 AGGCTCCTACACAACCAAGGGCCTAG
1 AGGCTCCCACACAACCAAAGGCCTAG
86868257 TTTACCGATG
Statistics
Matches: 236, Mismatches: 74, Indels: 27
0.70 0.22 0.08
Matches are distributed among these distances:
41 12 0.05
42 96 0.41
43 124 0.53
44 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (43 bp):
AGGCTCCCACACAACCAAAGGCCTAGGTTGCTGATGGTGCCCA
Found at i:86868020 original size:158 final size:157
Alignment explanation
Indices: 86867728--86868029 Score: 360
Period size: 158 Copynumber: 1.9 Consensus size: 157
86867718 TTACCGATGG
* * * * *
86867728 TGCCGAGGCTACCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTACACGACTA
1 TGCCGAGGCTACCGCACAACCAAAGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCACACAACGA
* *** *
86867793 AGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCCCGCGCGACCAAGGGCCTAAGTTGCCGATGGTG
66 AGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCCCGCACGACCAAGCAACAAAGTTGCCGATGGTG
*
86867858 CCGAGGCTCTCGCACATCCAACCATGA
131 CCGAGGCTCCCGCACATCCAACCATGA
* * *
86867885 TGCCTGAGGCT-CCTGCACAACCAAAGGCCTAGTTTGCTGGTGGTGCCCAAGGCTCCCACACAAC
1 TGCC-GAGGCTACC-GCACAACCAAAGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCACACAAC
* * ** *
86867949 GAAGGGCTTAGGTTG-CTGATGGTGTCTGAGGCTCCCTCAC-ATCCAAGCAACAAAG-TGCCGAT
64 GAAGGGCCTAGGTTGTC-GATGGTGCCCAAGGCTCCCGCACGA-CCAAGCAACAAAGTTGCCGAT
86868011 GGTGCCCGAGGCTCCCGCA
127 GGTG-CCGAGGCTCCCGCA
86868030 TAACCAAGGG
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
157 19 0.16
158 102 0.84
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (157 bp):
TGCCGAGGCTACCGCACAACCAAAGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCACACAACGA
AGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCCCGCACGACCAAGCAACAAAGTTGCCGATGGTG
CCGAGGCTCCCGCACATCCAACCATGA
Found at i:86868038 original size:328 final size:328
Alignment explanation
Indices: 86867576--86868209 Score: 803
Period size: 328 Copynumber: 1.9 Consensus size: 328
86867566 CTCTCGTACG
* * * *
86867576 ACCAAGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCGCACGACGAAAGGACTAGGTTGCTGAT
1 ACCAAAGGCCTAGGTTGCTGATGGTGCCCAAGGCTCCCACACAACGAAAGGACTAGGTTGCTGAT
* * *** * * * *
86867641 GGTGCCTGAGGCTTCCGTGCGACCAAGGGCCTAGGTGTCGATGGTGCCCGAGGCTCCCACATGAC
66 GGTGCCTGAGGCTTCCCTGCCACCAAGCAACAAAGTGCCGATGGTGCCCGAGGCTCCCACATAAC
* *
86867706 CAAGGGCTTAGGTTACCGATGGTGCCGAGGCTAC-CGCACAACCAAGGGCCTAGGTTGCCGATGG
131 CAAGGGCTTAGGGTACCGATGGTGCCGAGGCT-CTCGCACAACCAAGAGCCTAGGTTGCCGATGG
* * * *
86867770 TGCCCGAGGCTCCTACACGACTAAGGGCCTAGGTT-GTCGATGGTGCCCAAGGCTCCCGCGCGAC
195 TGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACT-GATGGTGCCCAAGGCTCCCGCACGAC
* * * *
86867834 CAAGGGCCTAAGTTGCC-GATGGTGCCGAGGCTCTCGCACATCCAACCATGATGCCTGAGGCTCC
259 CAAAGGACTAAGTTGCCAG-TGGTGCCAAGGCTCTCACACATCCAACCATGATGCCTGAGGCTCC
86867898 TGCACA
323 TGCACA
* * *
86867904 ACCAAAGGCCTAGTTTGCTGGTGGTGCCCAAGGCTCCCACACAACG-AAGGGCTTAGGTTGCTGA
1 ACCAAAGGCCTAGGTTGCTGATGGTGCCCAAGGCTCCCACACAACGAAAGGAC-TAGGTTGCTGA
* *
86867968 TGGTGTCTGAGGC-TCCCT-CACATCCAAGCAACAAAGTGCCGATGGTGCCCGAGGCTCCCGCAT
65 TGGTGCCTGAGGCTTCCCTGC-CA-CCAAGCAACAAAGTGCCGATGGTGCCCGAGGCTCCCACAT
** **
86868031 AACCAAGGGCTTAGGGTGTCGATGGTGCCGAGGCTCTCGCATGACCAAGAGCCTAGGTTGCCGAT
128 AACCAAGGGCTTAGGGTACCGATGGTGCCGAGGCTCTCGCACAACCAAGAGCCTAGGTTGCCGAT
* ** * *
86868096 GGTGCCTGAGGCTCCCGTACGACCAAGGGCCTAGGTTACTGATGGTGCTCGAGGCTCCCGCACGA
193 GGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACTGATGGTGCCCAAGGCTCCCGCACGA
* * * *
86868161 CCAAAGGACTAGGTTGCCAGTGGTGCTAAGGCTTTCACACATGCAACCA
258 CCAAAGGACTAAGTTGCCAGTGGTGCCAAGGCTCTCACACATCCAACCA
86868210 CCAAGGTGCT
Statistics
Matches: 259, Mismatches: 41, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
326 1 0.00
327 11 0.04
328 245 0.95
329 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (328 bp):
ACCAAAGGCCTAGGTTGCTGATGGTGCCCAAGGCTCCCACACAACGAAAGGACTAGGTTGCTGAT
GGTGCCTGAGGCTTCCCTGCCACCAAGCAACAAAGTGCCGATGGTGCCCGAGGCTCCCACATAAC
CAAGGGCTTAGGGTACCGATGGTGCCGAGGCTCTCGCACAACCAAGAGCCTAGGTTGCCGATGGT
GCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACTGATGGTGCCCAAGGCTCCCGCACGACCA
AAGGACTAAGTTGCCAGTGGTGCCAAGGCTCTCACACATCCAACCATGATGCCTGAGGCTCCTGC
ACA
Found at i:86868062 original size:42 final size:42
Alignment explanation
Indices: 86868007--86868173 Score: 176
Period size: 43 Copynumber: 3.9 Consensus size: 42
86867997 AACAAAGTGC
* *
86868007 CGATGGTGCCCGAGGCTCCCGCATAACCAAGGGCTTAGGGTGT
1 CGATGGTG-CCGAGGCTCCCGCATGACCAAGGGCCTAGGGTGT
* * * *
86868050 CGATGGTGCCGAGGCTCTCGCATGACCAAGAGCCTAGGTTGC
1 CGATGGTGCCGAGGCTCCCGCATGACCAAGGGCCTAGGGTGT
* *
86868092 CGATGGTGCCTGAGGCTCCCGTACGACCAAGGGCCTA-GGT-T
1 CGATGGTGCC-GAGGCTCCCGCATGACCAAGGGCCTAGGGTGT
* * *
86868133 ACTGATGGTGCTCGAGGCTCCCGCACGACCAAAGGACTAGG
1 -C-GATGGTGC-CGAGGCTCCCGCATGACCAAGGGCCTAGG
86868174 TTGCCAGTGG
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
42 41 0.39
43 61 0.59
44 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.18
Consensus pattern (42 bp):
CGATGGTGCCGAGGCTCCCGCATGACCAAGGGCCTAGGGTGT
Found at i:86868380 original size:42 final size:43
Alignment explanation
Indices: 86868273--86868439 Score: 212
Period size: 43 Copynumber: 3.9 Consensus size: 43
86868263 GATGGTGTCT
* *
86868273 GAGGCACCATGGTGCTGATGCTGCTCGAGGCTCCCGCACATTC
1 GAGGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATTC
* *
86868316 GAGGCACCAAGGTGTCGATGCTGCTCAAGGC-CCCTGCACATTC
1 GAGGCACCAAGGTGCCGATGCTGCTCGAGGCTCCC-GCACATTC
* * * *
86868359 GA-GCACCAAGGTGCCGGTGCTGCTTGAGGCTCCCACACATCC
1 GAGGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATTC
* * *
86868401 GAGGTACCAAGGTGCCGATGCTGCTTGAGGCTCTCGCAC
1 GAGGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCAC
86868440 CACCAACGTC
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 35 0.33
43 72 0.67
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (43 bp):
GAGGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATTC
Found at i:86868460 original size:43 final size:43
Alignment explanation
Indices: 86868278--86868463 Score: 130
Period size: 43 Copynumber: 4.3 Consensus size: 43
86868268 TGTCTGAGGC
* * * * * * * *
86868278 ACCATGGTGCTGATGCTGCTCGAGGCTCCCGCACATTCGAGGC
1 ACCAAGGTGCCGATGCTGCTTGAGGCTCCCACACATCCAACGT
* ** * * * *
86868321 ACCAAGGTGTCGATGCTGCTCAAGGC-CCCTGCACATTCGA-GC
1 ACCAAGGTGCCGATGCTGCTTGAGGCTCCC-ACACATCCAACGT
* * *
86868363 ACCAAGGTGCCGGTGCTGCTTGAGGCTCCCACACATCCGAGGT
1 ACCAAGGTGCCGATGCTGCTTGAGGCTCCCACACATCCAACGT
86868406 ACCAAGGTGCCGATGCTGCTTGAGGCTCTCGCAC-CA-CCAACGT
1 ACCAAGGTGCCGATGCTGCTTGAGGCTC-C-CACACATCCAACGT
*
86868449 -CCTAGGTTGCCGATG
1 ACCAAGG-TGCCGATG
86868464 GTGTCCAAGG
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
42 40 0.33
43 76 0.62
44 3 0.02
45 3 0.02
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (43 bp):
ACCAAGGTGCCGATGCTGCTTGAGGCTCCCACACATCCAACGT
Found at i:86875359 original size:40 final size:40
Alignment explanation
Indices: 86875232--86875361 Score: 131
Period size: 40 Copynumber: 3.2 Consensus size: 40
86875222 ATGCTGGAAA
* *
86875232 TTATATCCGGGTTAAGACCCGAAGGCAATTGT--ACTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAC-A-TGG
* * * * **
86875272 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
*
86875312 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
86875352 TTATATCCGG
1 TTATATCCGG
86875362 TTATATTCCG
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
39 2 0.03
40 66 0.94
42 1 0.01
43 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
Found at i:86878582 original size:58 final size:59
Alignment explanation
Indices: 86878482--86878603 Score: 158
Period size: 58 Copynumber: 2.1 Consensus size: 59
86878472 GGGAAGGACA
* * * *
86878482 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTG-ATTTCTACC-TTT
1 GGGATGATTCATTCATTATTAGGTACCGAACATGCAACGGTATCCGAATTT-TACCTTTT
* * *
86878540 GGGATGATTCATTCATTATTAGGTACTGAACATGTAATGGTATCCGAATTTTACCTTTT
1 GGGATGATTCATTCATTATTAGGTACCGAACATGCAACGGTATCCGAATTTTACCTTTT
86878599 GGGAT
1 GGGAT
86878604 TGGGGAGGGA
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
58 43 0.78
59 12 0.22
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (59 bp):
GGGATGATTCATTCATTATTAGGTACCGAACATGCAACGGTATCCGAATTTTACCTTTT
Found at i:86879377 original size:186 final size:183
Alignment explanation
Indices: 86879057--86879412 Score: 448
Period size: 186 Copynumber: 1.9 Consensus size: 183
86879047 TTTTTTTCTA
* * * *
86879057 TTGGCCCAAAAGAAATACAATAAGCCGAATAAAATATGGCATGATGGCACGGCACAGTAGAAAAT
1 TTGGCCCAAAACAAATACAAGAACCCGAATAAAATATGGCATGATGGCACGGCACAGAAGAAAAT
* * * * * ***
86879122 TGAACAAGTGCCCAGACCACCAGCAGTTGGGAGCTTGTACTTGCACCACCACGGCCCCCGTTGTG
66 TAAACAAGTGACCAGACCACCAACAGTTGGGAGCTCGAACCCACACCACCACGGCCCCCGTTGTG
* *
86879187 CCATGTTTCCCGA-GGGGC-AGCACGGCCAAGTGTTTAACTTAGAAATTTTTTG
131 CCATGTTTCCCAAGGGGGCGA-CACAGCCAAGTGTTTAACTTAGAAATTTTTTG
* * *
86879239 TTGGCCCAAAACAAATACAAGAACCCGAATGAAGTATGGCATGATGGCATGGCACAGCACGGAAG
1 TTGGCCCAAAACAAATACAAGAACCCGAATAAAATATGGCATGATGGCACGG--CA-CA--GAAG
* * *
86879304 AAAATTAAACAA-TTACCGGACCACCAACAGTTGGGAGCTCGAACCCACACCATCACGGCCCCCG
61 AAAATTAAACAAGTGACCAGACCACCAACAGTTGGGAGCTCGAACCCACACCACCACGGCCCCCG
*
86879368 TTGTGCCATGTTTCTCAAGGGGGCGACACAGCCAAGTGTTTAACT
126 TTGTGCCATGTTTCCCAAGGGGGCGACACAGCCAAGTGTTTAACT
86879413 AACTCCTGAC
Statistics
Matches: 146, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
182 46 0.32
184 2 0.01
185 2 0.01
186 58 0.40
187 37 0.25
188 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (183 bp):
TTGGCCCAAAACAAATACAAGAACCCGAATAAAATATGGCATGATGGCACGGCACAGAAGAAAAT
TAAACAAGTGACCAGACCACCAACAGTTGGGAGCTCGAACCCACACCACCACGGCCCCCGTTGTG
CCATGTTTCCCAAGGGGGCGACACAGCCAAGTGTTTAACTTAGAAATTTTTTG
Found at i:86882166 original size:40 final size:40
Alignment explanation
Indices: 86882065--86882285 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
86882055 TATTCGAATG
* * *
86882065 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
86882106 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
86882146 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
86882186 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
86882226 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
86882265 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
86882286 ATACTTGGGT
Statistics
Matches: 153, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 15 0.10
40 96 0.63
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:86890207 original size:40 final size:40
Alignment explanation
Indices: 86890106--86890325 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
86890096 TATTCGAATG
* * *
86890106 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
86890147 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
86890187 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
86890227 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
86890266 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
86890305 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
86890326 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 50 0.33
40 59 0.39
41 28 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:86890259 original size:39 final size:39
Alignment explanation
Indices: 86890106--86890325 Score: 228
Period size: 39 Copynumber: 5.5 Consensus size: 39
86890096 TATTCGAATG
*
86890106 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCT-AGTGACT
* * *
86890147 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
* ** *
86890187 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGG-CTAAGTCCGAAGGCATTTGTGCTAGTGACT
* *
86890227 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
* * * **
86890266 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
*
86890305 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGT-CCGAAG
86890326 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
38 12 0.08
39 53 0.36
40 52 0.35
41 31 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
Found at i:86890284 original size:79 final size:81
Alignment explanation
Indices: 86890106--86890289 Score: 264
Period size: 79 Copynumber: 2.3 Consensus size: 81
86890096 TATTCGAATG
* * *
86890106 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
* * *
86890171 ATTTGTGCGAGTTACT
66 ATTTATGCGAGTGACC
* * *
86890187 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
*
86890250 ATTTATGCTAGTGACC
66 ATTTATGCGAGTGACC
86890266 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
86890290 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 43 0.47
80 19 0.21
81 29 0.32
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
ATTTATGCGAGTGACC
Found at i:86897785 original size:48 final size:46
Alignment explanation
Indices: 86897564--86897830 Score: 181
Period size: 48 Copynumber: 5.7 Consensus size: 46
86897554 GAGGCCGACA
* * * * * *
86897564 CCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATTCGTGCCGCTG
1 CCATGTCCCAGACATGGTCTTACACTGGCACTCTC-TA---ATGCCGATG
* *
86897614 CCATGTCCCAGACATGATCTTACACTGGCACT-TCTATATGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACTCTCTA-A--TGCCGATG
** * *
86897662 CCATGTTGCAGACATGGTCTTACACTGACACATCTCTTA-GCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCAC-TCTCTAATGCCGATG
* * * *
86897708 -CATGTCCCAAACAT-GTCTTTCACTAGCTCTCGTCTCAATGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACTC-TCT-AATGCCGATG
* *
86897754 CCATGTCCCAGGCATGGTCTTACACTGG--CTCTCATAATGTGGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACTCTC-TAA--T-GCCGATG
*
86897802 -CATGTCCTAGACAT-GTCTTACACTGGCAC
1 CCATGTCCCAGACATGGTCTTACACTGGCAC
86897831 ACAAATAACT
Statistics
Matches: 172, Mismatches: 30, Indels: 32
0.74 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 14 0.08
45 16 0.09
46 29 0.17
47 25 0.15
48 52 0.30
49 3 0.02
50 31 0.18
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
CCATGTCCCAGACATGGTCTTACACTGGCACTCTCTAATGCCGATG
Found at i:86900308 original size:56 final size:56
Alignment explanation
Indices: 86900238--86900368 Score: 181
Period size: 56 Copynumber: 2.3 Consensus size: 56
86900228 CCTAGACAGG
* * *
86900238 GTCTTACTCACACACATATATCGAAGGCACATAGCGATACCAACGTATTAAACGTA
1 GTCTTACTCGCACACATATATCGAACGCACATAGCGATACCAACGTATTAAACATA
* ** * *
86900294 GTCTTACTCGCACACATATATCGAACTCACATTTCGATGCCAACGTATTAAACATG
1 GTCTTACTCGCACACATATATCGAACGCACATAGCGATACCAACGTATTAAACATA
*
86900350 GTCTTACTCGTACACATAT
1 GTCTTACTCGCACACATAT
86900369 TGATGCCATG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 66 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (56 bp):
GTCTTACTCGCACACATATATCGAACGCACATAGCGATACCAACGTATTAAACATA
Found at i:86905090 original size:40 final size:41
Alignment explanation
Indices: 86904999--86905108 Score: 138
Period size: 40 Copynumber: 2.7 Consensus size: 41
86904989 ATAACCACGT
* *
86904999 GCACGAATGCCTTCGGGTCTTAGCCTGGA-TAGAACGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
86905039 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-CCG-CTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
*
86905079 GCAC-AATTGCCTTCGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
86905109 ATAATTTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
39 2 0.03
40 56 0.89
41 2 0.03
42 3 0.05
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:86911526 original size:47 final size:47
Alignment explanation
Indices: 86911472--86911565 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
86911462 GGGCGAGACA
86911472 CAGTTCCATCGTGTCCTTGTGTACGATTTCCTGAAAAGAATCTTGAG
1 CAGTTCCATCGTGTCCTTGTGTACGATTTCCTGAAAAGAATCTTGAG
86911519 CAGTTCCATCGTGTCCTTGTGTACGATTTCCTGAAAAGAATCTTGAG
1 CAGTTCCATCGTGTCCTTGTGTACGATTTCCTGAAAAGAATCTTGAG
86911566 TAGTATGATC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (47 bp):
CAGTTCCATCGTGTCCTTGTGTACGATTTCCTGAAAAGAATCTTGAG
Found at i:86922243 original size:28 final size:27
Alignment explanation
Indices: 86922180--86922249 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
86922170 ATAGTGAGTC
86922180 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
86922207 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
86922235 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86922250 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:86930265 original size:28 final size:27
Alignment explanation
Indices: 86930234--86930317 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 27
86930224 AAAACATTTA
86930234 TTTATTATTTTATGTTTTTATTTTTATT
1 TTTATTATTTTA-GTTTTTATTTTTATT
*** *
86930262 TTTATTACAACTACTTTTTATTTTTATT
1 TTTATTA-TTTTAGTTTTTATTTTTATT
*
86930290 TTTAGTTGATTTTAGAATTTTATTTTTA
1 TTTA-TT-ATTTTAG-TTTTTATTTTTA
86930318 ATCATTTTCG
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
28 25 0.58
29 6 0.14
30 12 0.28
ACGTcount: A:0.23, C:0.04, G:0.05, T:0.69
Consensus pattern (27 bp):
TTTATTATTTTAGTTTTTATTTTTATT
Found at i:86936091 original size:32 final size:32
Alignment explanation
Indices: 86936028--86936117 Score: 130
Period size: 32 Copynumber: 2.8 Consensus size: 32
86936018 GTATTAAACG
* *
86936028 TGGTCTTAC-TCGCACA-CATATATCGATGCCA
1 TGGTCTTACAT-GCACATCACATATCGACGCCA
86936059 TGGTCTTACATGCACATCACATATCGACGCCA
1 TGGTCTTACATGCACATCACATATCGACGCCA
*
86936091 TGGTCTTACATGCATATCACATATCGA
1 TGGTCTTACATGCACATCACATATCGA
86936118 AATCCTATGT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
31 14 0.26
32 40 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (32 bp):
TGGTCTTACATGCACATCACATATCGACGCCA
Found at i:86942649 original size:28 final size:28
Alignment explanation
Indices: 86942617--86942685 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
86942607 GCGTAGATCA
86942617 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
86942645 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
86942673 CGATA-TACCCCTA
1 CGAAATTACCCCTA
86942686 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:86954659 original size:22 final size:25
Alignment explanation
Indices: 86954615--86954661 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
86954605 TAATAAAATA
86954615 TAAAATTATATTTAATAATTAATTT
1 TAAAATTATATTTAATAATTAATTT
*
86954640 TAAAA-TAT-TTTATTAA-TAATTT
1 TAAAATTATATTTAATAATTAATTT
86954662 GGGTTTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 7 0.33
24 3 0.14
25 5 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TAAAATTATATTTAATAATTAATTT
Found at i:86956842 original size:21 final size:21
Alignment explanation
Indices: 86956818--86956895 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
86956808 CCATCCCAAT
86956818 CCAACCAACACACCACCTGTA
1 CCAACCAACACACCACCTGTA
*
86956839 CCAACCAATACACCACCTGTA
1 CCAACCAACACACCACCTGTA
* **
86956860 CCAACCAATACACCACCCATA
1 CCAACCAACACACCACCTGTA
86956881 CCAACCAACACACCA
1 CCAACCAACACACCA
86956896 TGTGGGGATT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.41, C:0.47, G:0.03, T:0.09
Consensus pattern (21 bp):
CCAACCAACACACCACCTGTA
Found at i:86957025 original size:27 final size:27
Alignment explanation
Indices: 86957013--86957064 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
86957003 ATATCAGAAT
*
86957013 ACGTGGCAAAGCCACCAGAACAGTAAA
1 ACGTGGCAAAGCCACTAGAACAGTAAA
* *
86957040 ACGTGGCAAAGCCACTTGTACAGTA
1 ACGTGGCAAAGCCACTAGAACAGTA
86957065 CTTCCTCCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.13
Consensus pattern (27 bp):
ACGTGGCAAAGCCACTAGAACAGTAAA
Found at i:86965773 original size:40 final size:39
Alignment explanation
Indices: 86965728--86965935 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
86965718 CGGAATACAA
*
86965728 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
86965768 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
86965808 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
86965848 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
86965888 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
86965928 CCGGATAT
1 CCGGATAT
86965936 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:86965875 original size:80 final size:81
Alignment explanation
Indices: 86965728--86965933 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
86965718 CGGAATACAA
* * * *
86965728 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
86965792 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
86965808 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
86965871 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
86965888 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
86965934 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:86971771 original size:40 final size:40
Alignment explanation
Indices: 86971712--86971853 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
86971702 AAATTGAATG
* * *
86971712 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
86971752 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
86971792 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
86971832 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
86971854 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:86971854 original size:40 final size:39
Alignment explanation
Indices: 86971751--86971879 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
86971741 TGCTGGAAAT
* * *
86971751 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
86971791 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
86971831 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
86971871 TATATCCGG
1 TATATCCGG
86971880 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:86980234 original size:40 final size:39
Alignment explanation
Indices: 86980189--86980396 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
86980179 CGGAATACAA
*
86980189 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
86980229 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
86980269 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
86980309 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
86980349 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
86980389 CCGGATAT
1 CCGGATAT
86980397 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:86980336 original size:80 final size:81
Alignment explanation
Indices: 86980189--86980394 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
86980179 CGGAATACAA
* * * *
86980189 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
86980253 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
86980269 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
86980332 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
86980349 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
86980395 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:86983134 original size:48 final size:48
Alignment explanation
Indices: 86983065--86983784 Score: 1190
Period size: 48 Copynumber: 15.0 Consensus size: 48
86983055 AGATAAATAT
* *
86983065 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
86983113 ATATATGTGTGATATGTATATGTGGTAAGGCCGAATGG-TGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAA
*
86983161 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
86983209 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
86983257 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
86983305 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
86983353 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
86983401 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
86983449 ATATGTATGAGATATGTATATGTGGTAAGGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
86983497 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
86983545 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
86983593 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
86983641 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
86983689 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
86983737 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
86983785 TGTTGTAACA
Statistics
Matches: 630, Mismatches: 40, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 1 0.00
48 628 1.00
49 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:86983868 original size:37 final size:37
Alignment explanation
Indices: 86983818--86983951 Score: 250
Period size: 37 Copynumber: 3.6 Consensus size: 37
86983808 ACATGAAACT
*
86983818 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTC
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
86983855 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
86983892 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
*
86983929 TGGAGATTATGTCTGGGTAAGAC
1 TGGAGATTATGTCCGGGTAAGAC
86983952 TTCGTAATAA
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:86994744 original size:27 final size:27
Alignment explanation
Indices: 86994646--86994744 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
86994636 CAGTAACACA
*
86994646 GCAAAGCTACTAATAACAGT-AAACGTG
1 GCAAAGCCACT-ATAACAGTAAAACGTG
* *
86994673 GC--AGCCACTAATATCAG-AATACGTG
1 GCAAAGCCACT-ATAACAGTAAAACGTG
* * *
86994698 GCAAAGCCACCAGAATAGTAAAACGTG
1 GCAAAGCCACTATAACAGTAAAACGTG
*
86994725 GCAAAGCCACTATTACAGTA
1 GCAAAGCCACTATAACAGTA
86994745 CTTCCTCCGA
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
25 21 0.38
26 4 0.07
27 31 0.55
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.17
Consensus pattern (27 bp):
GCAAAGCCACTATAACAGTAAAACGTG
Found at i:86997797 original size:58 final size:58
Alignment explanation
Indices: 86997659--86997802 Score: 168
Period size: 57 Copynumber: 2.5 Consensus size: 58
86997649 CCTCATAACA
* * * ** *
86997659 TATAACAGGATTACCAGTCCAGGTTAAATCTTTTTTGTACTATATGCTCAGAAAAGCT
1 TATATCAGGATTACCAGTCCAGGCTAAATCCTAATTGTACTATATGCTCAGAAAAGAT
* * *
86997717 TA-ATTAGGATTACCAGTCCAGGCTAAATCCTAATTGTAAC-ATATGCT-TGAGAGAGAT
1 TATATCAGGATTACCAGTCCAGGCTAAATCCTAATTGT-ACTATATGCTCAGA-AAAGAT
86997774 TATATCAGGATTACCAGTCCAGGCTAAAT
1 TATATCAGGATTACCAGTCCAGGCTAAAT
86997803 GTAACACCCC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
56 2 0.03
57 42 0.58
58 29 0.40
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (58 bp):
TATATCAGGATTACCAGTCCAGGCTAAATCCTAATTGTACTATATGCTCAGAAAAGAT
Found at i:86999035 original size:29 final size:29
Alignment explanation
Indices: 86998975--86999072 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
86998965 TGTATCTGGT
* * *
86998975 CCATTAAGCCC-AATCATATTTATATGGC
1 CCATTAGGCCCAAATAACATTTATATGGC
86999003 CCATTAGGCCCAAATAAC-TTGTATATGGC
1 CCATTAGGCCCAAATAACATT-TATATGGC
*
86999032 CCATTAGGCCCAAATCACATTTATATGGC
1 CCATTAGGCCCAAATAACATTTATATGGC
*
86999061 CCGTTAGGCCCA
1 CCATTAGGCCCA
86999073 GTCACATTCA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 12 0.19
29 48 0.77
30 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCATTAGGCCCAAATAACATTTATATGGC
Found at i:87019721 original size:12 final size:12
Alignment explanation
Indices: 87019704--87019762 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 12
87019694 TTATATTTTC
87019704 TTTAATTTTAAT
1 TTTAATTTTAAT
*
87019716 TTTAATCTTTATT
1 TTTAAT-TTTAAT
*
87019729 TTTGATTTTAAT
1 TTTAATTTTAAT
* *
87019741 GTTAGTTTT-A-
1 TTTAATTTTAAT
87019751 TTT-ATTTTAAT
1 TTTAATTTTAAT
87019762 T
1 T
87019763 AAGGGGATCA
Statistics
Matches: 36, Mismatches: 8, Indels: 7
0.71 0.16 0.14
Matches are distributed among these distances:
9 4 0.11
10 3 0.08
11 2 0.06
12 17 0.47
13 10 0.28
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (12 bp):
TTTAATTTTAAT
Found at i:87019726 original size:19 final size:19
Alignment explanation
Indices: 87019702--87019740 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
87019692 TTTTATATTT
87019702 TCTTTAATTTTAATTTTAA
1 TCTTTAATTTTAATTTTAA
* *
87019721 TCTTTATTTTTGATTTTAA
1 TCTTTAATTTTAATTTTAA
87019740 T
1 T
87019741 GTTAGTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (19 bp):
TCTTTAATTTTAATTTTAA
Found at i:87019749 original size:19 final size:19
Alignment explanation
Indices: 87019709--87019750 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
87019699 TTTTCTTTAA
*
87019709 TTTTAATTTTAATCTTTAT
1 TTTTAATTTTAATCGTTAT
* *
87019728 TTTTGATTTTAAT-GTTAG
1 TTTTAATTTTAATCGTTAT
87019746 TTTTA
1 TTTTA
87019751 TTTATTTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (19 bp):
TTTTAATTTTAATCGTTAT
Found at i:87027674 original size:43 final size:43
Alignment explanation
Indices: 87027622--87027813 Score: 260
Period size: 43 Copynumber: 4.5 Consensus size: 43
87027612 AGTTCGTTTG
*
87027622 AATTAATTGG-GACTAAGTGTGCGATACAATTATAGCCTCGGCT
1 AATTAATTGGCG-CTAAGTGTACGATACAATTATAGCCTCGGCT
* *
87027665 AATTAATTGGCGCTAAGTGTACAATACATTTATAGCCTCGGCT
1 AATTAATTGGCGCTAAGTGTACGATACAATTATAGCCTCGGCT
* *
87027708 AATTAATTGGCGCTAAGTGTACAATACATTTATAGCCTCGGCT
1 AATTAATTGGCGCTAAGTGTACGATACAATTATAGCCTCGGCT
* * * **
87027751 AATTAATTGGCGCTAAGTGTACGATACAATTCTAACTTCAACT
1 AATTAATTGGCGCTAAGTGTACGATACAATTATAGCCTCGGCT
* *
87027794 CATTAATTGGCACTAAGTGT
1 AATTAATTGGCGCTAAGTGT
87027814 GCGAGTTCGT
Statistics
Matches: 136, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
43 135 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (43 bp):
AATTAATTGGCGCTAAGTGTACGATACAATTATAGCCTCGGCT
Found at i:87034771 original size:2 final size:2
Alignment explanation
Indices: 87034758--87034787 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
87034748 TGGTTGCCTA
*
87034758 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87034788 GTATGTGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:87039059 original size:33 final size:33
Alignment explanation
Indices: 87039022--87039088 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
87039012 TGTTCGAGAG
87039022 ATAGAATTTGGCATCGAACTTGTACCTGGTACC
1 ATAGAATTTGGCATCGAACTTGTACCTGGTACC
*
87039055 ATAGAATTTGGCATCGAACTTTTACCTGGTACC
1 ATAGAATTTGGCATCGAACTTGTACCTGGTACC
87039088 A
1 A
87039089 CACCAATCTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (33 bp):
ATAGAATTTGGCATCGAACTTGTACCTGGTACC
Found at i:87043182 original size:46 final size:47
Alignment explanation
Indices: 87043116--87043212 Score: 178
Period size: 48 Copynumber: 2.1 Consensus size: 47
87043106 GTGATTTTCC
87043116 TATTTATTAATGTGACCATA-TGCTATTTGAATTAAGTAAATTGCCT
1 TATTTATTAATGTGACCATAGTGCTATTTGAATTAAGTAAATTGCCT
87043162 TATTTATTAATGTGACCATATGTGCTATTTGAATTAAGTAAATTGCCT
1 TATTTATTAATGTGACCATA-GTGCTATTTGAATTAAGTAAATTGCCT
87043210 TAT
1 TAT
87043213 CATAATGAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 20 0.41
48 29 0.59
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.44
Consensus pattern (47 bp):
TATTTATTAATGTGACCATAGTGCTATTTGAATTAAGTAAATTGCCT
Found at i:87043190 original size:25 final size:24
Alignment explanation
Indices: 87043115--87043191 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 24
87043105 AGTGATTTTC
87043115 CTATTTATTAATGTGACCATA-TG
1 CTATTTATTAATGTGACCATATTG
87043138 CTATTTGAATTAA-GT-A--A-ATTG
1 CTATTT--ATTAATGTGACCATATTG
87043159 CCTTATTTATTAATGTGACCATATGTG
1 -C-TATTTATTAATGTGACCATAT-TG
87043186 CTATTT
1 CTATTT
87043192 GAATTAAGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 20
0.68 0.00 0.32
Matches are distributed among these distances:
20 1 0.02
21 8 0.19
22 3 0.07
23 13 0.30
24 2 0.05
25 11 0.26
26 3 0.07
27 2 0.05
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (24 bp):
CTATTTATTAATGTGACCATATTG
Done.