Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 291 of 328
Found at i:87057573 original size:13 final size:13
Alignment explanation
Indices: 87057555--87057595 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
87057545 TAGATTTTTC
87057555 CTAAATATTATCA
1 CTAAATATTATCA
87057568 CTAAATA--ATCA
1 CTAAATATTATCA
87057579 -TAAATATTATCA
1 CTAAATATTATCA
87057591 CTAAA
1 CTAAA
87057596 ATGTAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.24
11 4 0.16
12 4 0.16
13 11 0.44
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:87058155 original size:41 final size:41
Alignment explanation
Indices: 87058065--87058242 Score: 187
Period size: 41 Copynumber: 4.3 Consensus size: 41
87058055 TAAACAAGGG
* * * *
87058065 ACGTATGTGCAATTCAGAGGTATCGAAGTAAAAATAGGGGC
1 ACGTATGTGCAATTAAGGGGTATCAAAGTACAAATAGGGGC
* * * * * * *
87058106 ATGCATGTGCTATTAATGGGTATCGAAGTACAAACAGGGAC
1 ACGTATGTGCAATTAAGGGGTATCAAAGTACAAATAGGGGC
* * *
87058147 ACATATGTGCAATTCAGGGGTA-CTAAAGTACAAATAGAGGC
1 ACGTATGTGCAATTAAGGGGTATC-AAAGTACAAATAGGGGC
* * *
87058188 ACGTATGTGCAATTTAGGGGTACCAAAGTACAAAAAGGGGC
1 ACGTATGTGCAATTAAGGGGTATCAAAGTACAAATAGGGGC
87058229 ACGTATGTGCAATT
1 ACGTATGTGCAATT
87058243 CAGCAATATT
Statistics
Matches: 112, Mismatches: 23, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
40 1 0.01
41 110 0.98
42 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (41 bp):
ACGTATGTGCAATTAAGGGGTATCAAAGTACAAATAGGGGC
Found at i:87058163 original size:82 final size:82
Alignment explanation
Indices: 87058068--87058245 Score: 214
Period size: 82 Copynumber: 2.2 Consensus size: 82
87058058 ACAAGGGACG
* * * * * * *
87058068 TATGTGCAATTCAGAGGTA-TCGAAGTAAAAATAGGGGCATGCATGTGCTATTAATGGGTATCGA
1 TATGTGCAATTCAGAGGTACT-AAAGTAAAAATAGAGGCACGCATGTGCAATTAAGGGGTACCAA
*
87058132 AGTACAAACAGGGACACA
65 AGTACAAAAAGGGACACA
* * * *
87058150 TATGTGCAATTCAGGGGTACTAAAGTACAAATAGAGGCACGTATGTGCAATTTAGGGGTACCAAA
1 TATGTGCAATTCAGAGGTACTAAAGTAAAAATAGAGGCACGCATGTGCAATTAAGGGGTACCAAA
* *
87058215 GTACAAAAAGGGGCACG
66 GTACAAAAAGGGACACA
87058232 TATGTGCAATTCAG
1 TATGTGCAATTCAG
87058246 CAATATTCTT
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
82 80 0.99
83 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (82 bp):
TATGTGCAATTCAGAGGTACTAAAGTAAAAATAGAGGCACGCATGTGCAATTAAGGGGTACCAAA
GTACAAAAAGGGACACA
Found at i:87066942 original size:25 final size:25
Alignment explanation
Indices: 87066908--87066957 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
87066898 TAGATACGTG
87066908 GAACACATCATGAATCTTCTCTAAT
1 GAACACATCATGAATCTTCTCTAAT
87066933 GAACACATCATGAATCTTCTCTAAT
1 GAACACATCATGAATCTTCTCTAAT
87066958 TCAGGTGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (25 bp):
GAACACATCATGAATCTTCTCTAAT
Found at i:87075295 original size:48 final size:48
Alignment explanation
Indices: 87075181--87075281 Score: 150
Period size: 48 Copynumber: 2.1 Consensus size: 48
87075171 GCCACAATAT
* *
87075181 ATATACACATCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
1 ATATACATAGCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
* *
87075229 ATATGCATGGCTCATACATATTTCACATTAGCC-TTTCGGCTTTACCAC
1 ATATACATAGCTCATACATATTTCACATTAGCCATTT-GGCTTTACCAC
87075277 ATATA
1 ATATA
87075282 TATATCTTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 3 0.06
48 44 0.94
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.36
Consensus pattern (48 bp):
ATATACATAGCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
Found at i:87077865 original size:40 final size:39
Alignment explanation
Indices: 87077726--87077879 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
87077716 TGTGAATGAA
* *
87077726 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
87077765 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
87077804 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
87077844 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
87077880 TGTTTTGAAC
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:87077865 original size:79 final size:79
Alignment explanation
Indices: 87077726--87077879 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
87077716 TGTGAATGAA
** *
87077726 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
87077791 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
87077804 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
87077869 TGTCCCGAAGG
65 AGTCCCGAAGG
87077880 TGTTTTGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:87085776 original size:40 final size:39
Alignment explanation
Indices: 87085637--87085790 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
87085627 TGTGAATGAA
* *
87085637 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
87085676 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
87085715 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
87085755 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
87085791 TGTTTGAACG
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:87085776 original size:79 final size:79
Alignment explanation
Indices: 87085637--87085790 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
87085627 TGTGAATGAA
** *
87085637 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
87085702 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
87085715 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTA
*
87085780 TGTCCCGAAGG
65 AGTCCCGAAGG
87085791 TGTTTGAACG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:87089125 original size:29 final size:29
Alignment explanation
Indices: 87089030--87089129 Score: 105
Period size: 27 Copynumber: 3.5 Consensus size: 29
87089020 GACAAGATTG
* * * *
87089030 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
* * *
87089060 GCACTAAGTGTGCGATTTG--ATTCTATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
*
87089087 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
87089116 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
87089130 GATTCACTAT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
27 21 0.36
28 1 0.02
29 20 0.34
30 16 0.28
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:87089141 original size:29 final size:28
Alignment explanation
Indices: 87089059--87089129 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
87089049 AAAATTGTAC
* *
87089059 AGCACTAAGTGTGCGATTTGAT-TCTAT
1 AGCACTAAGTGTGCGAGTTGATATATAT
* *
87089086 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGTTG-ATATATAT
87089115 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
87089130 GATTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 18 0.47
28 1 0.03
29 19 0.50
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGATATATAT
Found at i:87095106 original size:29 final size:29
Alignment explanation
Indices: 87095073--87095204 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
87095063 GTGACGAGAT
87095073 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
87095102 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
87095131 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
87095160 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
87095189 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
87095205 GGCTTAAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:87107615 original size:26 final size:26
Alignment explanation
Indices: 87107585--87107691 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
87107575 TGAAATTCCC
87107585 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87107611 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
87107637 ATCATGAAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
87107662 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87107688 ATCA
1 ATCA
87107692 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87107677 original size:51 final size:52
Alignment explanation
Indices: 87107585--87107691 Score: 198
Period size: 51 Copynumber: 2.1 Consensus size: 52
87107575 TGAAATTCCC
*
87107585 ATCATGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
87107637 ATCATGAAACATTTACCTAA-CCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
87107688 ATCA
1 ATCA
87107692 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 35 0.65
52 19 0.35
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (52 bp):
ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATT
Found at i:87114564 original size:26 final size:26
Alignment explanation
Indices: 87114534--87114641 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
87114524 TGAAATTCCC
87114534 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87114560 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
87114586 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87114612 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87114638 ATCA
1 ATCA
87114642 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87129469 original size:43 final size:43
Alignment explanation
Indices: 87129422--87129809 Score: 310
Period size: 42 Copynumber: 9.1 Consensus size: 43
87129412 GGTGGTACGA
* *
87129422 GAGCCTCGAGCAGCATCGGTACCTTGGTGCCTCGGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
* * *
87129465 GAGCCTCGAGTAGCATCGGTACCTTGGTG-CTCGGATATGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
*
87129507 GGGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
* * *
87129550 GAGCCTCGAGCAGCATTGGCACCATGGTGCCTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
* * * * * * * * *
87129593 GAGCCTTG-GATACCATCCGCAAACTAGG-CCCTTGGTTGTGCGG
1 GAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCCTCGGATGTGCGG
* * * * *
87129636 GAGCCTCGAGCACCATCGGCACCTTGGTG-GTTGGATGTACGA
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
* ** * *
87129678 GAGCCTC-AGCACCATCGGCAACCTAAG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGG
* * * * *
87129720 GAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGAT-GTGCGG
* * * * * *
87129762 GAGCCTCGGGCACCATTGGCACGTTGGTG-CTTGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
87129804 GAGCCT
1 GAGCCT
87129810 TGGACACCAT
Statistics
Matches: 288, Mismatches: 46, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
41 13 0.05
42 140 0.49
43 130 0.45
44 5 0.02
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.21
Consensus pattern (43 bp):
GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
Found at i:87129531 original size:85 final size:86
Alignment explanation
Indices: 87129422--87129664 Score: 267
Period size: 85 Copynumber: 2.8 Consensus size: 86
87129412 GGTGGTACGA
* * * *
87129422 GAGCCTCGAGCAGCATCGGTACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGTAGCATCGGTAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
87129487 CTTGGTG-CTCGGATATGCGG
66 CATGGTGCCTCAGATATGCGG
* *
87129507 GGGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATTGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
87129572 CATGGTGCCTCAGATGTGCGG
66 CATGGTGCCTCAGATATGCGG
* * * * * * * * * *
87129593 GAGCCTTG-GATACCATCCGCAAACTAGG-CCCTTGGTTGTGCGGGAGCCTCGAGCACCATCGGC
1 GAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGC
*
87129656 ACCTTGGTG
64 ACCATGGTG
87129665 GTTGGATGTA
Statistics
Matches: 133, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
85 66 0.50
86 62 0.47
87 5 0.04
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (86 bp):
GAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
CATGGTGCCTCAGATATGCGG
Found at i:87129684 original size:42 final size:42
Alignment explanation
Indices: 87129422--87130555 Score: 424
Period size: 43 Copynumber: 27.0 Consensus size: 42
87129412 GGTGGTACGA
* * * *
87129422 GAGCCTCGAGCAGCATCGGTACCTTGGTGCCTCGGATGTGTGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTGCGG
* * * * *
87129465 GAGCCTCGAGTAGCATCGGTACCTTGGTGCTCGGATATGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* * *
87129507 GGGCCTCGAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTGCGG
* * * **
87129550 GAGCCTCGAGCAGCATTGGCACCATGGTGCCTCAGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTGCGG
* * * * * ** *
87129593 GAGCCTTG-GATACCATCCGCAAACTAGGCCCTTGGTTGTGCGG
1 GAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGATGTGCGG
* * *
87129636 GAGCCTCGAGCACCATCGGCACCTTGGTGGTTGGATGTACGA
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
** **
87129678 GAGCCTC-AGCACCATCGGCAACCTAAGCCCTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
* * **
87129720 GAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGG
* * * *
87129762 GAGCCTCGGGCACCATTGGCACGTTGGTGCTTGGATGTACGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* * * ** **
87129804 GAGCCTTG-GACACCATTGGCAACCTAGGCCCTT-CTTCGTGCGG
1 GAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
* * * *
87129847 GAGCCTC-AGGCACCATCGGCAAACTAGG-CCTTTGGTTGTGCGG
1 GAGCCTCGA-GCACCATCGGC-ACCTTGGTGC-TTGGATGTGCGG
* *
87129890 GAGCCTC--G-------GGCACCAT-G-G-TTGGATGTGCGA
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* * * * *
87129920 GAGCCTCGAC-ACCACCAGCAACCTAGG-CCATTGG-TCGTGCGG
1 GAGCCTCGAGCACCATCGGC-ACCTTGGTGC-TTGGAT-GTGCGG
* * ** *
87129962 GAGCCTC-AGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCAG
1 GAGCCTCGA-GCACCATCGG-CACCTTGGTGCTTGGAT-GTGCGG
* * * * * **
87130005 GAGCCTTGGGCACCATCGGTAATCTAGGCCCTTGG-TCGTGCGG
1 GAGCCTCGAGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCGG
* ** ** *
87130048 GAGCCTCG-GCACCATCGACAACCTAAGCCCTTGG-TCATGCGG
1 GAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
** * ** * * *
87130090 GAGCCTC-ATGCACCATAAGCACCTAGGCACTTAG-TCGTACAG
1 GAGCCTCGA-GCACCATCGGCACCTTGGTGCTTGGAT-GTGCGG
* *
87130132 AAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTG-GAG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCG-G
* * * *
87130174 GAGCCTC-AGGCACCATCGACAACC-TAGTCCCTTTG-TCGTGCGG
1 GAGCCTCGA-GCACCATCGGC-ACCTTGGT-GCTTGGAT-GTGCGG
* * * * *
87130217 AAGGCTCGGGCACCATCGGCAACCTAGGTCCTTGGATGTG-GG
1 GAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGG
* * * * * *
87130259 AGAGCCTCGGGTACCATCGGCCACCTAGG-CCTTGG-TCATGCGA
1 -GAGCCTCGAGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCGG
* *
87130302 GAGCCTCGGGCATCATCGGCACCTTGGTGCTTGGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* ** *
87130344 GAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGA
1 GAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
* * *** * ** * *
87130387 GACCCTCGGGCACCATCAATAACCTAGGCCCTTGG-TCGTGAGA
1 GAGCCTCGAGCACCATC-GGCACCTTGGTGCTTGGAT-GTGCGG
* * * *
87130430 GATCCTCGGGCACCATCGGCACATTGGTGCCTGGATGTGCGG
1 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
* * * ** **
87130472 GAGCCTCGGGCACCATCTGCAACCTAGGCCCTTGG-TCGTGCTA
1 GAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
* *
87130515 GAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATGTGC
1 GAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTGC
87130556 AGGCTAAAGA
Statistics
Matches: 861, Mismatches: 167, Indels: 126
0.75 0.14 0.11
Matches are distributed among these distances:
30 17 0.02
32 1 0.00
33 2 0.00
34 3 0.00
38 2 0.00
39 3 0.00
40 1 0.00
41 26 0.03
42 361 0.42
43 428 0.50
44 17 0.02
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.20
Consensus pattern (42 bp):
GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGG
Found at i:87129861 original size:43 final size:43
Alignment explanation
Indices: 87129587--87129905 Score: 308
Period size: 42 Copynumber: 7.5 Consensus size: 43
87129577 TGCCTCAGAT
* ** * * *
87129587 GTGCGGGAGCCTTGGATACCATCCGCAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ***
87129630 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
87129672 GTACGAGAGCCTC-AGCACCATCGGCAACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
87129714 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
87129756 GTGCGGGAGCCTCGGGCACCATTGGC-ACGTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * **
87129798 GTACGGGAGCCTTGGACACCATTGGCAACCTAGGCCCTTCTTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
87129841 GTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCTTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
87129884 GTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCAT
87129906 GGTTGGATGT
Statistics
Matches: 223, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
41 13 0.06
42 114 0.51
43 96 0.43
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:87129862 original size:170 final size:169
Alignment explanation
Indices: 87129587--87130535 Score: 736
Period size: 170 Copynumber: 5.7 Consensus size: 169
87129577 TGCCTCAGAT
* ** * * * * *
87129587 GTGCGGGAGCCTTGGATACCATCCGCAAACTAGGCCCTTGGTTGTGCGGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTGGATGTACGGGAGCCTCGGGCACCAT
* *** * * *
87129652 CGGC-ACCTTGGTGGTTGGAT-GTACGAGAGCCTCA-GCACCATCGGCAACCTAAGCCCTTGGTC
64 CGGCAACCTAGGCCCTT-GATCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTC
87129714 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
128 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * * * *
87129756 GTGCGGGAGCCTCGGGCACCATTGGCACGTTGGTGCTTGGATGTACGGGAGCCTTGGACACCATT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTTGGATGTACGGGAGCCTCGGGCACCATC
** * * *
87129821 GGCAACCTAGGCCCTTCTTCGTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCTTTGGTTGT
65 GGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGT
87129886 GCGGGAGCCTCGGG---CA-C--CA--T-GG---TTGGAT-
130 GCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * * * *
87129914 GTGCGAGAGCCTC-GACACCACCAGCAACCTAGGCCATTGG-TCGTGCGGGAGCCTCAGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC-TTGGAT-GTACGGGAGCCTCGGGCACCA
* * * ** * *
87129977 TCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTTGGGCACCATCGGTAATCTAGGCCCTTGGTC
63 TCGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
87130042 GTGCGGGAGCCTC-GGCACCATCGACAACCTAAGCCCTTGGTC
128 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* ** ** * * *
87130084 ATGCGGGAGCCTCATGCACCATAAGCACCTAGGCACTTAG-TCGTACAGAAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC-CTTGGAT-GTACGGGAGCCTCGGGCACCAT
* ** * * *
87130148 CGGC-ACCTTGGTGCTTGGAT-GTG-GAGGAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGT
64 CGGCAACCTAGGCCCTT-GATCGTGCG-GGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGT
* * *
87130210 CGTGCGGAAGGCTCGGGCACCATCGGCAACCTAGGTCCTTGGAT-
127 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG-TC
* * *
87130254 GTG-GGAGAGCCTCGGGTACCATCGGCCACCTAGGCCTTGGTCATG--CGAGAGCCTCGGGCATC
1 GTGCGG-GAGCCTCGGGCACCATCGG-CACCTAGGCCTTGG--ATGTACGGGAGCCTCGGGCACC
* **
87130316 ATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTG
62 ATCGGCAACCTAGGCCCTT-GATCGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTG
* * ***
87130378 GTCGTGCGAGACCCTCGGGCACCATCAATAACCTAGGCCCTTGGTC
125 GTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTGGTC
* * * * * *
87130424 GTGAGAGATCCTCGGGCACCATCGGCACATTGGTGCC-TGGATGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAC-CTAG-GCCTTGGATGTACGGGAGCCTCGGGCACCAT
* * ** *
87130488 CTGCAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGCACCATCGGCA
64 CGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCAGGCACCATCGGCA
87130536 CCTTGGTGCC
Statistics
Matches: 619, Mismatches: 117, Indels: 86
0.75 0.14 0.10
Matches are distributed among these distances:
157 12 0.02
158 109 0.18
159 1 0.00
160 2 0.00
161 3 0.00
162 1 0.00
163 1 0.00
164 3 0.00
166 2 0.00
167 3 0.00
168 35 0.06
169 104 0.17
170 284 0.46
171 55 0.09
172 3 0.00
173 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.20
Consensus pattern (169 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTTGGATGTACGGGAGCCTCGGGCACCATCG
GCAACCTAGGCCCTTGATCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
CGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
Found at i:87129960 original size:72 final size:73
Alignment explanation
Indices: 87129841--87129977 Score: 195
Period size: 72 Copynumber: 1.9 Consensus size: 73
87129831 GCCCTTCTTC
* * * * * * *
87129841 GTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCTTTGGTTGTGCGGGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCAGACACCACCAGCAAACTAGGCCATTGGTCGTGCGGGAGCCTCAGGCACCAT
87129906 GGTTGGAT
66 GGTTGGAT
*
87129914 GTGCGAGAGCCTC-GACACCACCAGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCAGGCACCAT
1 GTGCGAGAGCCTCAGACACCACCAGCAAACTAGGCCATTGGTCGTGCGGGAGCCTCAGGCACCAT
87129978 CGGTAACCTA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
72 44 0.79
73 12 0.21
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.18
Consensus pattern (73 bp):
GTGCGAGAGCCTCAGACACCACCAGCAAACTAGGCCATTGGTCGTGCGGGAGCCTCAGGCACCAT
GGTTGGAT
Found at i:87129988 original size:43 final size:43
Alignment explanation
Indices: 87129914--87130535 Score: 579
Period size: 43 Copynumber: 14.6 Consensus size: 43
87129904 ATGGTTGGAT
* * * * *
87129914 GTGCGAGAGCCTC-GACACCACCAGCAACCTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
87129956 GTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
87129999 GTGCAGGAGCCTTGGGCACCATCGGTAATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
87130042 GTGCGGGAGCCTC-GGCACCATCGACAACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** ** * *
87130084 ATGCGGGAGCCTCATGCACCATAAGC-ACCTAGGCACTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
87130126 GTACAGAAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * *
87130168 GTG-GAGGAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTC
1 GTGCG-GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
87130211 GTGCGGAAGGCTCGGGCACCATCGGCAACCTAGGTCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
87130254 GTG-GGAGAGCCTCGGGTACCATCGGCCACCTAGG-CCTTGGTC
1 GTGCGG-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
87130296 ATGCGAGAGCCTCGGGCATCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
*
87130338 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ***
87130381 GTGCGAGACCCTCGGGCACCATCAATAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
87130424 GTGAGAGATCCTCGGGCACCATCGGC-ACATTGGTGCC-TGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TC
*
87130466 GTGCGGGAGCCTCGGGCACCATCTGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
**
87130509 GTGCTAGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
87130536 CCTTGGTGCC
Statistics
Matches: 466, Mismatches: 94, Indels: 39
0.78 0.16 0.07
Matches are distributed among these distances:
41 7 0.02
42 200 0.43
43 257 0.55
44 2 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:87130082 original size:85 final size:86
Alignment explanation
Indices: 87129920--87130535 Score: 569
Period size: 85 Copynumber: 7.2 Consensus size: 86
87129910 GGATGTGCGA
* * * * * *
87129920 GAGCCTC-GACACCACCAGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCAGGCACCATCGGTAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
87129984 CCTAGGCCCTTGGTCGTGCAG
66 CCTAGGCCCTTGGTCGTGCAG
* * * *
87130005 GAGCCTTGGGCACCATCGGTAATCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGACAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* * *
87130069 CCTAAGCCCTTGGTCATGCGG
66 CCTAGGCCCTTGGTCGTGCAG
** ** * * * * *
87130090 GAGCCTCATGCACCATAAGC-ACCTAGGCACTTAGTCGTACAGAAGCCTCGGGCACCATCGGC-A
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* ** *
87130153 CCTTGGTGCTTGGAT-GTGGAG
66 CCTAGGCCCTTGG-TCGTGCAG
* * * * * *
87130174 GAGCCTCAGGCACCATCGACAACCTAGTCCCTTTGTCGTGCGGAAGGCTCGGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* *
87130239 CCTAGGTCCTTGGAT-GTG-GG
66 CCTAGGCCCTTGG-TCGTGCAG
* * * * *
87130259 AGAGCCTCGGGTACCATCGGCCACCTAGG-CCTTGGTCATGCGAGAGCCTCGGGCATCATCGGC-
1 -GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* ** *
87130322 ACCTTGGTGCTTGGAT-GTGCGG
65 ACCTAGGCCCTTGG-TCGTGCAG
* * * ***
87130344 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGACCCTCGGGCACCATCAATAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
87130409 CCTAGGCCCTTGGTCGTG-AG
66 CCTAGGCCCTTGGTCGTGCAG
* * * * *
87130429 AGATCCTCGGGCACCATCGGC-ACATTGGTGCC-TGGAT-GTGCGGGAGCCTCGGGCACCATCTG
1 -GAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
87130491 CAACCTAGGCCCTTGGTCGTGCTA-
63 CAACCTAGGCCCTTGGTCGTGC-AG
87130515 GAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGGCACCATCGGCA
87130536 CCTTGGTGCC
Statistics
Matches: 433, Mismatches: 82, Indels: 31
0.79 0.15 0.06
Matches are distributed among these distances:
84 94 0.22
85 227 0.52
86 111 0.26
87 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.19
Consensus pattern (86 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCTTGGTCGTGCAG
Found at i:87130478 original size:128 final size:127
Alignment explanation
Indices: 87129956--87130531 Score: 465
Period size: 128 Copynumber: 4.5 Consensus size: 127
87129946 GCCATTGGTC
* * *
87129956 GTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCGTGC-AGGAGCCTTGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCA
*** * * * * * * ** *
87130020 TCGGTAATCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGACAACCTAAG-CCCTTGG-
65 TCAACAACCTAGG-CCTTGGTCATGAGAGAGCCTCGGGCACCATCGGC-ACATTGGTGCC-TGGA
87130082 T
127 T
* ** ** * * *
87130083 CATGCGGGAGCCTCATGCACCATAAGC-ACCTAGGCACTTAGTCGTAC-AGAAGCCTCGGGCACC
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG-AGCCTCGGGCACC
** * * * * * * * *
87130146 ATCGGC-ACCTTGGTGCTTGG--ATGTGGAGGAGCCTCAGGCACCATCGACA-ACCTAGTCCCTT
64 ATCAACAACCTAGG-CCTTGGTCATG-AGA-GAGCCTCGGGCACCATCGGCACA-TTGGTGCC-T
*
87130207 TG-T
124 GGAT
* * * * *
87130210 CGTGCGGAAGGCTCGGGCACCATCGGCAACCTAGGTCCTTGGAT-GTGGGAGAGCCTCGGGTACC
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACC
** * * * * *
87130274 ATCGGCCACCTAGGCCTTGGTCATGCGAGAGCCTCGGGCATCATCGGCACCTTGGTGCTTGGAT
64 ATCAACAACCTAGGCCTTGGTCATGAGAGAGCCTCGGGCACCATCGGCACATTGGTGCCTGGAT
* *
87130338 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGACCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * *
87130403 CAATAACCTAGGCCCTTGGTCGTGAGAGATCCTCGGGCACCATCGGCACATTGGTGCCTGGAT
66 CAACAACCTAGG-CCTTGGTCATGAGAGAGCCTCGGGCACCATCGGCACATTGGTGCCTGGAT
* *
87130466 GTGCGGGAGCCTCGGGCACCATCTGCAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
87130531 C
66 C
87130532 GGCACCTTGG
Statistics
Matches: 365, Mismatches: 67, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
124 2 0.01
125 1 0.00
126 22 0.06
127 140 0.38
128 186 0.51
129 11 0.03
130 3 0.01
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (127 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
CAACAACCTAGGCCTTGGTCATGAGAGAGCCTCGGGCACCATCGGCACATTGGTGCCTGGAT
Found at i:87136195 original size:185 final size:183
Alignment explanation
Indices: 87135829--87136192 Score: 457
Period size: 185 Copynumber: 2.0 Consensus size: 183
87135819 GTAAGGAGTT
* * ** *
87135829 AGTTAAACACTTGGCCATGCCGCCCCTCGGGAAACATGGCACAATGGGGGTTGTGGTGGGGGTGC
1 AGTTAAACACTTGGCCATACCGCCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGGGGGTGC
* * *
87135894 GAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAAATTTTTGCCGTGTGGTGCCATGCCATCA
66 GAGCTCCCAACTATTGGTGGTCCGGGCACTTGTTCAAATTTTT--C-TGTCGTGACATGCCATCA
* * * * *
87135959 TGCCATACTTCATTCAGCTTCTTGTATTTGTTTTGGGCGTACAGAAAAAATTTTGA
128 TGACATACTTCATTCAGCTTCTTGTATTTCTTTTAGGCGAACAAAAAAAATTTTGA
**
87136015 AGTTAAACACTTGGCTGTACCGCCCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGGTGCAG
1 AGTTAAACACTTGGCCATACCG-CCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGG-G--G
* *
87136080 GTGCGAGCTTCCAACTATTGGTGGTCCGGGCACTTGTT-AAATTTTT-T-TCCGTGACGTGCCAT
62 GTGCGAGCTCCCAACTATTGGTGGTCCGGGCACTTGTTCAAATTTTTCTGT-CGTGACATGCCAT
* *
87136142 CATGACATATTTCATTCGGCTTCTTGTATTTCTTTTAGGC-AACAAAAAAAA
126 CATGACATACTTCATTCAGCTTCTTGTATTTCTTTTAGGCGAACAAAAAAAA
87136193 ATTCAGTTAA
Statistics
Matches: 154, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
184 10 0.06
185 46 0.30
186 19 0.12
187 33 0.21
188 1 0.01
189 8 0.05
190 37 0.24
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.29
Consensus pattern (183 bp):
AGTTAAACACTTGGCCATACCGCCCCTCGGGAAACATGGCACAACGGGGGCCGCGGTGGGGGTGC
GAGCTCCCAACTATTGGTGGTCCGGGCACTTGTTCAAATTTTTCTGTCGTGACATGCCATCATGA
CATACTTCATTCAGCTTCTTGTATTTCTTTTAGGCGAACAAAAAAAATTTTGA
Found at i:87146099 original size:66 final size:66
Alignment explanation
Indices: 87145975--87146099 Score: 153
Period size: 66 Copynumber: 1.9 Consensus size: 66
87145965 GTTAGTAGCC
* ** * *
87145975 TCACACAGCCTAGCACATAGGCGTGTGGCTTGAATGTGTGTCGCAAGTCAGTATGCTCATTATTT
1 TCACACAGCCTAGCACACAGGCGTGTGGCTTGAACATGTGACGCAAGTCAGTAAGCTCATTATTT
87146040 T
66 T
* * * *
87146041 TCACACGGCCTAGCACACGGGCGTGTGGCTTGACCATGTGAC-CTAAGTTAGTAAGCTCA
1 TCACACAGCCTAGCACACAGGCGTGTGGCTTGAACATGTGACGC-AAGTCAGTAAGCTCA
87146100 CTAGTTTGAA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 1 0.02
66 48 0.98
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (66 bp):
TCACACAGCCTAGCACACAGGCGTGTGGCTTGAACATGTGACGCAAGTCAGTAAGCTCATTATTT
T
Found at i:87147871 original size:18 final size:18
Alignment explanation
Indices: 87147850--87147884 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
87147840 ATTGGGGTTG
87147850 ATAGATTGTGAGATGAAA
1 ATAGATTGTGAGATGAAA
87147868 ATAGATTGTGAGATGAA
1 ATAGATTGTGAGATGAA
87147885 CACATAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (18 bp):
ATAGATTGTGAGATGAAA
Found at i:87148059 original size:43 final size:43
Alignment explanation
Indices: 87147945--87148129 Score: 203
Period size: 43 Copynumber: 4.3 Consensus size: 43
87147935 TTGGTATATG
* *
87147945 CAATCATGCACTATGTGTGACAGTATATTTTCTTC-GATTTAT-
1 CAATGATGCACTATGTGTGCCAGTATATTTTCTTCAG-TTTATC
* * * *
87147987 CGATGATGCACTTTGTATGCCAGCATATTTTCTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGTATATTTTCTTCAGTTTATC
* * *
87148030 CAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATC
1 CAATGATGCACTATGTGTGCCAGTATATTTTCTTCAGTTTATC
* * * ** *
87148073 TAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGTATATTTTCTTCAGTTTATC
*
87148116 TAATGATGCACTAT
1 CAATGATGCACTAT
87148130 ATATGCTAGT
Statistics
Matches: 119, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
42 34 0.29
43 85 0.71
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.41
Consensus pattern (43 bp):
CAATGATGCACTATGTGTGCCAGTATATTTTCTTCAGTTTATC
Found at i:87148123 original size:86 final size:85
Alignment explanation
Indices: 87147945--87148209 Score: 279
Period size: 86 Copynumber: 3.1 Consensus size: 85
87147935 TTGGTATATG
*
87147945 CAATCATGCACTATGTGTGAC-AGTATATTTTCTTCGATTTATC-GATGATGCACTT-TGTATGC
1 CAATGATGCACTATGTGTG-CTAGTATATTTTCTTCG-TTTATCTGATGATGCACTTATGT-TGC
* ** *
87148007 CAGCATATTTTCTTCAGTTTATC
63 CAGTATAGATACTTCAGTTTATC
* * *
87148030 CAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATCTAATGATGCACTATATGTT-CC
1 CAATGATGCACTATGTGTGCTAGTATATTTTCTTC-GTTTATCTGATGATGCACT-TATGTTGCC
87148094 AGTATAGATACTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
* * * ** * * * *
87148116 TAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATATGATGATGCACTGTAT-TTGCT
1 CAATGATGCACTATGTGTGCTAGTATATTTTC-TTCGTTTATCTGATGATGCACT-TATGTTGCC
87148180 AGTATAGATACTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
87148202 CAATGATG
1 CAATGATG
87148210 AGATGCTTCA
Statistics
Matches: 151, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
84 1 0.01
85 38 0.25
86 105 0.70
87 4 0.03
88 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (85 bp):
CAATGATGCACTATGTGTGCTAGTATATTTTCTTCGTTTATCTGATGATGCACTTATGTTGCCAG
TATAGATACTTCAGTTTATC
Found at i:87148130 original size:43 final size:43
Alignment explanation
Indices: 87148018--87148209 Score: 231
Period size: 43 Copynumber: 4.5 Consensus size: 43
87148008 AGCATATTTT
* * * ** *
87148018 CTTCAGTTTATCCAATGATGCACTATGTGTGCTAGTCTATTTT
1 CTTCAGTTTATCTAATGATGCACTATATGTGCTAGTATAGATA
* * *
87148061 CTTCAGCTTATCTAATGATGCACTATATGTTCCAGTATAGATA
1 CTTCAGTTTATCTAATGATGCACTATATGTGCTAGTATAGATA
*
87148104 CTTCAGTTTATCTAATGATGCACTATATATGCTAGTATAGATA
1 CTTCAGTTTATCTAATGATGCACTATATGTGCTAGTATAGATA
** * * * *
87148147 CTTTGGTTTATATGATGATGCACTGTATTTGCTAGTATAGATA
1 CTTCAGTTTATCTAATGATGCACTATATGTGCTAGTATAGATA
*
87148190 CTTCAGTTTATCCAATGATG
1 CTTCAGTTTATCTAATGATG
87148210 AGATGCTTCA
Statistics
Matches: 125, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 125 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (43 bp):
CTTCAGTTTATCTAATGATGCACTATATGTGCTAGTATAGATA
Found at i:87148219 original size:25 final size:25
Alignment explanation
Indices: 87148185--87148234 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
87148175 TTGCTAGTAT
87148185 AGATACTTCAGTTTATCCAATGATG
1 AGATACTTCAGTTTATCCAATGATG
*
87148210 AGATGCTTCAGTTTATCCAATGATG
1 AGATACTTCAGTTTATCCAATGATG
87148235 CACTATATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (25 bp):
AGATACTTCAGTTTATCCAATGATG
Found at i:87148279 original size:43 final size:43
Alignment explanation
Indices: 87148240--87148331 Score: 159
Period size: 43 Copynumber: 2.1 Consensus size: 43
87148230 TGATGCACTA
*
87148240 TATGTGCCAGTATAGATATTTCAGA-TTATCTGATTATGCATTG
1 TATGTGCCAGTATAGATACTTCA-ATTTATCTGATTATGCATTG
87148283 TATGTGCCAGTATAGATACTTCAATTTATCTGATTATGCATTG
1 TATGTGCCAGTATAGATACTTCAATTTATCTGATTATGCATTG
87148326 TATGTG
1 TATGTG
87148332 TTAGGATAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 1 0.02
43 46 0.98
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (43 bp):
TATGTGCCAGTATAGATACTTCAATTTATCTGATTATGCATTG
Found at i:87148298 original size:111 final size:111
Alignment explanation
Indices: 87148099--87148312 Score: 304
Period size: 111 Copynumber: 1.9 Consensus size: 111
87148089 GTTCCAGTAT
* * * *
87148099 AGATACTTCAGTTTATCTAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATATGATG
1 AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTAGATTATATGATG
* * *
87148164 ATGCACTGTATTTGCTAGTATAGATACTTCAGTTTATCCAATGATG
66 ATGCACTGTATGTGCCAGTATAGATACTTCAATTTATCCAATGATG
* * *
87148210 AGATGCTTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATA-TTTCAGATTATCTGAT
1 AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTT-AGATTATATGAT
* *
87148274 TATGCATTGTATGTGCCAGTATAGATACTTCAATTTATC
65 GATGCACTGTATGTGCCAGTATAGATACTTCAATTTATC
87148313 TGATTATGCA
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
110 3 0.03
111 87 0.97
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (111 bp):
AGATACTTCAGTTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTAGATTATATGATG
ATGCACTGTATGTGCCAGTATAGATACTTCAATTTATCCAATGATG
Found at i:87148362 original size:154 final size:154
Alignment explanation
Indices: 87148061--87148339 Score: 369
Period size: 154 Copynumber: 1.8 Consensus size: 154
87148051 AGTCTATTTT
* * *
87148061 CTTCAGCTTATCTAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATCTAATGATGCA
1 CTTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCTAATGATGCA
* *** * *
87148126 CTATATATGCTAGTATAGATACTTTGGTTTATATGATGATGCACTGTATTTGCTAGTATAGATAC
66 CTATATATGCCAGTATAGATACTTCAATTTATATGATGATGCACTGTATGTGCTAGGATAGATAC
*
87148191 TTCAGTTTATCCAATGATGAGATG
131 TTCAGTTCATCCAATGATGAGATG
* * * *
87148215 CTTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATATTTCAGATTATCTGATTATGCA
1 CTTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCTAATGATGCA
* * * * * * *
87148280 TTGTATGTGCCAGTATAGATACTTCAATTTATCTGATTATGCATTGTATGTGTTAGGATA
66 CTATATATGCCAGTATAGATACTTCAATTTATATGATGATGCACTGTATGTGCTAGGATA
87148340 ATTGCGTTGA
Statistics
Matches: 105, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
154 105 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (154 bp):
CTTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCTAATGATGCA
CTATATATGCCAGTATAGATACTTCAATTTATATGATGATGCACTGTATGTGCTAGGATAGATAC
TTCAGTTCATCCAATGATGAGATG
Found at i:87156045 original size:28 final size:28
Alignment explanation
Indices: 87156014--87156069 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
87156004 TTTCTAATTA
* * *
87156014 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
87156042 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
87156070 TTATAAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:87156176 original size:12 final size:11
Alignment explanation
Indices: 87156160--87156189 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
87156150 GTATATTTTA
87156160 TTTTATATATT
1 TTTTATATATT
87156171 TCTTTATATATT
1 T-TTTATATATT
87156183 TTTTATA
1 TTTTATA
87156190 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:87156631 original size:13 final size:14
Alignment explanation
Indices: 87156613--87156641 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
87156603 TCTATCTTTC
87156613 TTATATATT-TTTA
1 TTATATATTATTTA
87156626 TTATATATTATTTA
1 TTATATATTATTTA
87156640 TT
1 TT
87156642 TTGTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:87156717 original size:5 final size:5
Alignment explanation
Indices: 87156692--87156748 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
87156682 CAAAATACTA
* * *
87156692 ATTAT ATTCAT ATTAT TTTAT ATTAT ATT-T CCTTAT ATTTT ATTCAT
1 ATTAT ATT-AT ATTAT ATTAT ATTAT ATTAT -ATTAT ATTAT ATT-AT
87156739 ATTAT ATTAT
1 ATTAT ATTAT
87156749 TATATATAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
4 1 0.02
5 31 0.74
6 10 0.24
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTAT
Found at i:87158845 original size:39 final size:39
Alignment explanation
Indices: 87158791--87158944 Score: 218
Period size: 39 Copynumber: 3.9 Consensus size: 39
87158781 AATGTGCGAA
87158791 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAG
*
87158830 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAG
* * * *
87158869 CTATGATATCCGGGATAAACTCCGAAGGCAATTGTGTGAG
1 TTGTGATATCCGGGCTAAGC-CCGAAGGCAATTGTGTGAG
* * *
87158909 TTGTGATATCTGGGTTAAGTCCCGAAGGCATTTGTG
1 TTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTG
87158945 CGGGTTACCA
Statistics
Matches: 101, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 54 0.53
40 46 0.46
41 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (39 bp):
TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAG
Found at i:87158913 original size:79 final size:79
Alignment explanation
Indices: 87158794--87158946 Score: 245
Period size: 79 Copynumber: 1.9 Consensus size: 79
87158784 GTGCGAATTG
* *
87158794 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGATAAACCCGAAGGCAATTGTGTGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
87158858 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* *
87158872 TGATATCCGGGATAAACTCCGAAGGCAATTGTGTGAGTTGTGATATCTGGGTTAAGTCCCGAAGG
1 TGATATCCGGGATAAAC-CCGAAGGCAATTGTGTGAGTTGTGATATCCGGGCTAAGTCCCGAAGG
*
87158937 CATTTGTGCG
65 CAATTGTGCG
87158947 GGTTACCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
78 15 0.22
79 36 0.53
80 17 0.25
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (79 bp):
TGATATCCGGGATAAACCCGAAGGCAATTGTGTGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:87168905 original size:28 final size:29
Alignment explanation
Indices: 87168838--87168938 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
87168828 ATAGTGAATC
*
87168838 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
87168867 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
87168895 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
87168925 CGCACACTTAGTGC
1 CGCACACTTAGTGC
87168939 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:87174123 original size:19 final size:19
Alignment explanation
Indices: 87174101--87174139 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
87174091 CAAAAATAAA
*
87174101 AAAAAATAAAAAAAAGGAG
1 AAAAAAGAAAAAAAAGGAG
* *
87174120 AAAAAAGAGAAAAATGGAG
1 AAAAAAGAAAAAAAAGGAG
87174139 A
1 A
87174140 GGCCAAGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (19 bp):
AAAAAAGAAAAAAAAGGAG
Found at i:87175375 original size:206 final size:206
Alignment explanation
Indices: 87175021--87175404 Score: 644
Period size: 206 Copynumber: 1.9 Consensus size: 206
87175011 GGCTGAAGCA
* * * * *
87175021 AGACACATAGCAGATCTAGCCTTCATATGTTTATATTGAAGCAGATCCAAGATGGTTTGGCATCC
1 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCC
87175086 TTGTGCTTACAAGGAACAAATCAAAATCATAGCTAATTTGGCTTTCACGTGCTTACGATGAAGCA
66 TTGTGCTTACAAGGAACAAATCAAAATCATAGCTAATTTGGCTTTCACGTGCTTACGATGAAGCA
87175151 AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
131 AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
87175216 CGACGGAGGGC
196 CGACGGAGGGC
* *
87175227 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCTAGATGGTTTGGTATCC
1 AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCC
* * * * *
87175292 TTGTGCTTACAAGGAGCAAATCAAAGA-CATAGCTGATTTGGTTTTCGCGTGCTTACGCTGAAGC
66 TTGTGCTTACAAGGAACAAATCAAA-ATCATAGCTAATTTGGCTTTCACGTGCTTACGATGAAGC
87175356 AAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
130 AAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
87175405 AAACAAATTT
Statistics
Matches: 165, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
206 164 0.99
207 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
AGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGCATCC
TTGTGCTTACAAGGAACAAATCAAAATCATAGCTAATTTGGCTTTCACGTGCTTACGATGAAGCA
AATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATT
CGACGGAGGGC
Found at i:87177057 original size:28 final size:28
Alignment explanation
Indices: 87177026--87177081 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
87177016 TTTCTAATGA
* * *
87177026 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
87177054 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
87177082 TTATAAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:87177179 original size:14 final size:14
Alignment explanation
Indices: 87177119--87177195 Score: 50
Period size: 14 Copynumber: 5.4 Consensus size: 14
87177109 TACTATCCAT
*
87177119 TATTTTATTATCATA
1 TATTTTATT-TTATA
* *
87177134 TATTTTATCTATAAA
1 TATTTTAT-TTTATA
* * *
87177149 TTATATTATATTGTA
1 -TATTTTATTTTATA
87177164 TATTTTATTTTATA
1 TATTTTATTTTATA
*
87177178 TA-TTT-CTTTATA
1 TATTTTATTTTATA
87177190 TATTTT
1 TATTTT
87177196 TTATAAAATT
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 13 0.28
15 12 0.26
16 8 0.17
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (14 bp):
TATTTTATTTTATA
Found at i:87177187 original size:12 final size:11
Alignment explanation
Indices: 87177171--87177200 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
87177161 GTATATTTTA
87177171 TTTTATATATT
1 TTTTATATATT
87177182 TCTTTATATATT
1 T-TTTATATATT
87177194 TTTTATA
1 TTTTATA
87177201 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:87177717 original size:11 final size:10
Alignment explanation
Indices: 87177702--87177760 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
87177692 TGTAAAATAC
87177702 TTATTATATT
1 TTATTATATT
87177712 CTTATTAT-TT
1 -TTATTATATT
87177722 TATATTATATT
1 T-TATTATATT
**
87177733 TCCTTATATT
1 TTATTATATT
87177743 TTATTCATATT
1 TTATT-ATATT
*
87177754 ATATTAT
1 TTATTAT
87177761 TATATATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATATT
Found at i:87179386 original size:16 final size:17
Alignment explanation
Indices: 87179365--87179399 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
87179355 CTTTGGGAGA
87179365 GTCACAC-GCCCGTGTG
1 GTCACACAGCCCGTGTG
87179381 GTCACACATGCCCGTGTG
1 GTCACACA-GCCCGTGTG
87179399 G
1 G
87179400 CTTGAGACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.14, C:0.34, G:0.31, T:0.20
Consensus pattern (17 bp):
GTCACACAGCCCGTGTG
Found at i:87180329 original size:131 final size:130
Alignment explanation
Indices: 87180043--87180402 Score: 364
Period size: 131 Copynumber: 2.7 Consensus size: 130
87180033 AGAAAAATAC
* * * *
87180043 GGTGAAATTCCGAAGAGACATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACAATAG
1 GGTGAAATTCTGAAG-GACTTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* * * * * *
87180108 GGCACT-ATTCCCCGAATCGCCAAACATCGAATATTTCTTTCATTTTAAAGGGTTTTTAGAAAAC
65 GGCA-TGATT-CCCGAATCGTCAAACACCGAATACTGCCTTCATTTTAAAGGATTTTTAGAAAAC
*
87180172 GTG
128 ATG
* * * * **
87180175 AGTGAAATTCTGAA-GAATATTCGATTGTTTTGAACAAATGAGAAATCACAACCCAGCACGATAG
1 GGTGAAATTCTGAAGGACT-TTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* * * * * *
87180239 GGCATGATTCCCGAATTGTCAAACACCGAGTACTGCCTTCGTTTTAAAGGATTTTTGGAAGATAT
65 GGCATGATTCCCGAATCGTCAAACACCGAATACTGCCTTCATTTTAAAGGATTTTTAGAAAACAT
87180304 G
130 G
* * * * * *
87180305 GGTGAAATTTTGAAGGGACTTTCGATTACTTTGAGCAAACAAGAAATTGCAACCCAACACGTTAG
1 GGTGAAATTCTGAA-GGACTTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* * *
87180370 GGCACGATTCCACGAATCGTCAAATATCGAATA
65 GGCATGATTCC-CGAATCGTCAAACACCGAATA
87180403 TCGCCTTTGT
Statistics
Matches: 183, Mismatches: 40, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
130 59 0.32
131 92 0.50
132 32 0.17
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (130 bp):
GGTGAAATTCTGAAGGACTTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGG
GCATGATTCCCGAATCGTCAAACACCGAATACTGCCTTCATTTTAAAGGATTTTTAGAAAACATG
Found at i:87180730 original size:18 final size:18
Alignment explanation
Indices: 87180693--87180732 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
87180683 ATGAATGAAT
* **
87180693 AATATAACAAGACATTAC
1 AATAAAACAAGACAAAAC
87180711 AATAAAACAAGACAAAAC
1 AATAAAACAAGACAAAAC
87180729 AATA
1 AATA
87180733 CACACGATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.65, C:0.15, G:0.05, T:0.15
Consensus pattern (18 bp):
AATAAAACAAGACAAAAC
Found at i:87182144 original size:10 final size:10
Alignment explanation
Indices: 87182131--87182155 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
87182121 GGCTGAAAAC
87182131 CAGCCAAATT
1 CAGCCAAATT
87182141 CAGCCAAATT
1 CAGCCAAATT
87182151 CAGCC
1 CAGCC
87182156 GAACTAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.36, G:0.12, T:0.16
Consensus pattern (10 bp):
CAGCCAAATT
Found at i:87183566 original size:16 final size:16
Alignment explanation
Indices: 87183545--87183575 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87183535 ATATACATTT
87183545 ATTCATTCATATCAAA
1 ATTCATTCATATCAAA
*
87183561 ATTCATTCATTTCAA
1 ATTCATTCATATCAA
87183576 TCATATTGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTCATTCATATCAAA
Found at i:87187824 original size:22 final size:22
Alignment explanation
Indices: 87187797--87187846 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
87187787 ACTTTTATTG
87187797 GTTTTTATCTTA-ATTTATTTTT
1 GTTTTTAT-TTATATTTATTTTT
* *
87187819 GTTTTTGTTTATTTTTATTTTT
1 GTTTTTATTTATATTTATTTTT
87187841 GTTTTT
1 GTTTTT
87187847 TGGTTTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.12, C:0.02, G:0.08, T:0.78
Consensus pattern (22 bp):
GTTTTTATTTATATTTATTTTT
Found at i:87187829 original size:16 final size:16
Alignment explanation
Indices: 87187810--87187844 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
87187800 TTTATCTTAA
*
87187810 TTTATTTTTGTTTTTG
1 TTTATTTTTATTTTTG
87187826 TTTATTTTTATTTTTG
1 TTTATTTTTATTTTTG
87187842 TTT
1 TTT
87187845 TTTGGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.83
Consensus pattern (16 bp):
TTTATTTTTATTTTTG
Found at i:87188471 original size:43 final size:45
Alignment explanation
Indices: 87188400--87188495 Score: 133
Period size: 43 Copynumber: 2.2 Consensus size: 45
87188390 ACTGCTTAGG
* *
87188400 AAGATAAGATCTTCAATCTTCAATCTGCTTTCTTGCTACCTCAAA
1 AAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAA
* *
87188445 AAGATAAGA-C-TCCATCTTCAACCTGCTCTCTTGCTACCTCAGA
1 AAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAA
*
87188488 GAGATAAG
1 AAGATAAG
87188496 GCTAGTGGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 36 0.78
44 1 0.02
45 9 0.20
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.30
Consensus pattern (45 bp):
AAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAAA
Found at i:87188494 original size:176 final size:175
Alignment explanation
Indices: 87188192--87188541 Score: 400
Period size: 176 Copynumber: 2.0 Consensus size: 175
87188182 CTCCATTGCC
* *
87188192 GTCATCTCCAATCTGCCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAGTATGCTTCCT
1 GTCATCTCCAATCTACCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAATATGCTTCCT
* ** ** * * * *
87188257 TGCTATCTCAGGAAGATAAGACTTGTATATGAGCCTACTCCATTGCAACTTCAGGGAGATAAGGC
66 TGCTACCTCAAAAAGATAAGACTTCCATATCAACCTACTCCATTGCAACCTCAGAGAGATAAGGC
* * **
87188322 TGGTAACTTAAATCTGCTCCATTGCCGGTACATAGAGATAAGATTT
131 TAGT-ACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATTT
* * * * *
87188368 GTCATCTCCGATCTACTCCGCTACTGCTTA-GGAAGATAAGATCTTCAATCTTCAATCTGCTTTC
1 GTCATCTCCAATCTACCCCGCTACTGCTTAGGGAA-ATAAGATATTCAATCTTCAATATGCTTCC
* * *
87188432 TTGCTACCTCAAAAAGATAAGAC-TCCATCTTCAACCTGCTCTC-TTGCTACCTCAGAGAGATAA
65 TTGCTACCTCAAAAAGATAAGACTTCCAT-ATCAACCTACTC-CATTGCAACCTCAGAGAGATAA
** * *
87188495 GGCTAGTGGTAAAATTTGCTCTATTGCCAATACATAGAGATAAGATT
128 GGCTAGTACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATT
87188542 CACCATTTTT
Statistics
Matches: 144, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
175 40 0.28
176 103 0.72
177 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (175 bp):
GTCATCTCCAATCTACCCCGCTACTGCTTAGGGAAATAAGATATTCAATCTTCAATATGCTTCCT
TGCTACCTCAAAAAGATAAGACTTCCATATCAACCTACTCCATTGCAACCTCAGAGAGATAAGGC
TAGTACTAAAATCTGCTCCATTGCCAATACATAGAGATAAGATTT
Found at i:87189863 original size:53 final size:52
Alignment explanation
Indices: 87189728--87189870 Score: 182
Period size: 51 Copynumber: 2.8 Consensus size: 52
87189718 TTTTTTATTA
*
87189728 TTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGGCCTTTCCATTTAT
1 TTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTTCCATTTAT
* * ** *
87189780 TTG-GTCTCAAAGTGCCTTTTGCGGGTTTTCACTTTGGCCCTTT-TTTTTTT
1 TTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTTCCATTTAT
* *
87189830 TTGAAAGTCTCAAAGCGCCCTTTGCAGGTTTTCATTTTGGC
1 TTG--AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGC
87189871 TTTCTTCCCT
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
50 7 0.09
51 37 0.47
52 3 0.04
53 31 0.40
ACGTcount: A:0.13, C:0.22, G:0.21, T:0.43
Consensus pattern (52 bp):
TTGAGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCCCTTTCCATTTAT
Found at i:87201238 original size:231 final size:230
Alignment explanation
Indices: 87200831--87201290 Score: 884
Period size: 231 Copynumber: 2.0 Consensus size: 230
87200821 ACACTTTTAA
87200831 AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
1 AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
87200896 AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
66 AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
87200961 CACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAAT
131 CACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAAT
87201026 AATAAAACACATGATAAGATATAATTTATAAAGGG
196 AATAAAACACATGATAAGATATAATTTATAAAGGG
*
87201061 AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTCTAAAAACTAGGGATATA
1 AATT-ATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
* *
87201126 TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTCA
65 CAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
87201191 GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
130 GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
87201256 TAATAAAACACATGATAAGATATAATTTATAAAGG
195 TAATAAAACACATGATAAGATATAATTTATAAAGG
87201291 TAAAAACTAT
Statistics
Matches: 226, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
230 4 0.02
231 222 0.98
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (230 bp):
AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
CACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAAT
AATAAAACACATGATAAGATATAATTTATAAAGGG
Found at i:87203015 original size:16 final size:16
Alignment explanation
Indices: 87202994--87203037 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
87202984 ATATGGGTTT
87202994 ATGAATTTGGGTTAGA
1 ATGAATTTGGGTTAGA
*
87203010 ATGAATTTGCGTTAGA
1 ATGAATTTGGGTTAGA
*
87203026 ATTGTATTTGGG
1 A-TGAATTTGGG
87203038 ATGGTATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 16 0.67
17 8 0.33
ACGTcount: A:0.27, C:0.02, G:0.30, T:0.41
Consensus pattern (16 bp):
ATGAATTTGGGTTAGA
Found at i:87203135 original size:16 final size:16
Alignment explanation
Indices: 87203116--87203147 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
87203106 TTTATCTTAA
*
87203116 TTTATTTTTGTTTTTG
1 TTTATTTTGGTTTTTG
87203132 TTTATTTTGGTTTTTG
1 TTTATTTTGGTTTTTG
87203148 GTTTTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.00, G:0.16, T:0.78
Consensus pattern (16 bp):
TTTATTTTGGTTTTTG
Found at i:87205063 original size:19 final size:20
Alignment explanation
Indices: 87205023--87205066 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
87205013 TTTATGGTTT
*
87205023 TAAATATTTTATGGTTAAAA
1 TAAATATTTTATGGTAAAAA
*
87205043 TAAATATTTTATTG-AAAAA
1 TAAATATTTTATGGTAAAAA
87205062 TAAAT
1 TAAAT
87205067 TAAATGGGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
TAAATATTTTATGGTAAAAA
Found at i:87205571 original size:19 final size:20
Alignment explanation
Indices: 87205534--87205576 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
87205524 TTATGGTTTT
* *
87205534 AAATATTTTTTTGTTAAAAC
1 AAATATTTTATTGTAAAAAC
*
87205554 AAATATTTTATTG-AAAAAT
1 AAATATTTTATTGTAAAAAC
87205573 AAAT
1 AAAT
87205577 TAAAATGGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (20 bp):
AAATATTTTATTGTAAAAAC
Found at i:87207244 original size:509 final size:513
Alignment explanation
Indices: 87204781--87210915 Score: 10476
Period size: 511 Copynumber: 12.1 Consensus size: 513
87204771 ACCCTTTGTC
* * * * *
87204781 CAATCCTCATGGTCAAAACTTACTTGTAATCGCAAATTTTCCAATGTATGTTGTGTTTGT-ACGG
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAAC-G
*
87204845 CCATAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
65 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
87204910 TCGGGTTTACTAGTCATTTCTTT-AAAAAAAATAGTTAGCTTAATTTCATTT-AAAATCGGTAAA
130 TCGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
*
87204973 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTATGGT
195 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
*
87205038 TAAAATAAATATTTTATTGAAAAATAAATT-AAATGGGGTTTCATTGAGAGAAGTTACAATATTA
260 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* *
87205102 ACTAAATAGGTATATAACATTCCGGAAAATTAAAATATTTTTAGAAAAATATCAC-AGATATCAT
325 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGA-ATATCAT
* *
87205166 GAATACAAATACCCCTATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
389 GAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
* * *
87205231 TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTAT-TTTTAAAGAAGCTCGTCGATCA
454 TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* ** *
87205290 CAATCCTAATTGTCCAAACCGACTTGTAATCAAAAAATTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * *
87205355 CCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTCTCGGGTTTCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* *
87205420 CGGGTTTACTACTCATTTCTTT-AAAAAAAATAGTTAGCTTAATTTCATTTAAAAACCGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* *
87205484 AATATTCCGGAAAATAAAAATATTTTTAGATAAATCAATTTTATGGTTTTAAATATTTTTTTGTT
196 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* * *
87205549 AAAACAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATACTAA
261 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
*
87205614 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAAAAAAATATCACGAATATCATGA
326 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
*
87205679 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCATGGGAGTATCGCCCAATATTTT
391 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* *
87205744 CTTCTTTCCTTTCCAGACCAACAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
456 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
87205802 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87205867 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
*
87205932 CGGGTTTACTACTCATTTCTTTAAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
**
87205997 TAATATTCTAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
195 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
* *
87206062 TAAAATAAATAATTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAAAGAAGTTACAATATTA
260 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* * *
87206127 ACAAAATAGGTATATAATATTCC-GAAAAAAAAAATATTTTTA-AAAAATATCATGAATATCATG
325 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
*
87206190 AATACTACTACCCCCATCCTTTTA-GCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
390 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
* *
87206254 TCCTCTTTCCATTCCAGACCACCAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCA
455 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * *
87206313 CAATCCTAATTGTCCAAACTTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* *
87206378 CCTAAAAATAGGTCTACAAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* *
87206443 CGGGTTTACTAGTCATTTCTTTGAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
*
87206508 -ATATTCCGG-AAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
196 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* *
87206571 AAAATAAATATTTCATTGAAAAA-AAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAA
261 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
* *
87206635 CTAAATAGGTATACAATATTCAGGAAAATAAAAATATTTTTA-AAAAATATCACGAATATCATGA
326 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
87206699 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
391 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* *
87206764 CTTCTTTCCTTTCCAGACCA-CAAATTCTGCTTATCTTTGATAGAAGCTCCGCGATC-
456 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
87206820 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87206885 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* *
87206950 CGGGTTTACTACTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATTGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* * ** *
87207015 AAAATTCCGAAAAATAGCAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTGTGGTT
196 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
87207080 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
261 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
87207145 CTAAATAGGTATA-AATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
326 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
87207209 ATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
391 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
*
87207273 CCTTTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
456 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * * *
87207331 CAATCCTAATTGTCCAAACCTACTTCTAATCGCAAATTTTTCAAAGAATGTTGTGTTTCTGAA-G
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGT-AACG
* *
87207395 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCGGGGCGAAAGCTAGGAGTTAA
65 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
* * *
87207460 TCGGGTTTACTACTCATTTCTTT-AAAAAAATTAGTTAGCTTAATTTCATTTGAAAATCGGTAAA
130 TCGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
87207524 TAATATTCCGG-AAATAAAAATA--TTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
195 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
* *
87207586 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGTGAAGTTACAATACTA
260 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
87207651 ACTAAATAGGTATATAATATT-CGGAAAATAAAAATATTTTTAG-AAAATATCACGAATATCATG
325 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
87207714 AATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
390 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
87207778 TCCTC-TTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA-CTCCTCGATCA
455 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
87207835 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87207900 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTA-GAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
87207964 CGGGTTTACAAGTCATTT-TTAAAAAAAAAAATTAGTTAGCTTAATTTCATTTGAAAATCGGTAA
131 CGGGTTTACTAGTCATTTCTT-TAAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAA
* * *
87208028 ATAATATTCCGGAATATAAAAATATATTTAGATAAATCAATTTTATGGTTTTAAATATTTTTTGG
194 ATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
* *
87208093 TAAAAATCAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATT
259 TTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATT
* * *
87208158 AACTAAATAGGTATTTAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCATGAATATCAT
324 AACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCAT
87208223 GAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
389 GAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
87208288 TTCCT-TTTCCTTT-CAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
87208346 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87208411 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTA-GAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
*
87208475 CGGGTTTACAAGTCA-TT-TTTAAAAAAAAATTA-TTAGCTTAATTTCATTT-AAAATCGGTAAA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
87208536 TAATATTCCGG-AAATAAAAATA-TTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
195 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
87208599 TAAAAT-AATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGA-AAGTTACAATATTA
260 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
*
87208662 ACTAAATAGGTATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAA-ATCACGAATATCATG
325 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
87208726 AATACTAATACCCCCATCCTTTTAGGCTGACAC-AATTCTTCCACGGGAGTATCGCCCAATATTT
390 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
87208790 TCCTCTTTCCTTTCCAGA-CACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
455 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
87208848 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCC-AAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87208912 CCT-AAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
*
87208976 CGGGTTTACTAGTCATTTCTTT-AAAAAAAATAGTTAGCTTAATTTCATTTAAAAAT-TGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
87209039 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
196 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
*
87209104 AAAA-AAATATTTTATTGAAAAATAAATTAAAAT-GGGTTTCATTGAGA-AAGTTACAATATTAA
261 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
* *
87209166 CTAAAGAGGTATATAATATTCCAGAAAAT-AAAATATTTTTAGAAAAATATCACGAATATCATGA
326 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
87209230 ATACTAATACCCCCATCCTTTTAGGC--ACACAAATTCTTCCACGGGAGTATC-CCCAATATTTT
391 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
87209292 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
456 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
87209350 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87209415 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTA-GAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* *
87209479 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAAT-AGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
87209543 AATATT-CGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
196 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
*
87209607 -AAA-AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAA
261 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
87209670 CTAAATAGGTATATAATATTCCGG-AAA-AAAAATATTTTTAGAAAAATATCACGAATATCATGA
326 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
87209733 ATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATC-CCCAATATTTT
391 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
*
87209796 -CTCTTT-CTTT-CTGACCA-CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
456 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
87209850 CAATCCTAATTGTCCAAACCTACTT-TAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87209914 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
87209979 CGGGTTTACTAGTCATTT-TTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
*
87210043 AATATTCCGGAAAATAACAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTT
196 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
*
87210107 AAAATAAATATTTTATTGAAAAAT-AATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAA
261 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
87210171 CTAAATAGGTATATAATATT--GGAAAATAAAAATA--TTTA-AAAAATATCACGAATATCATGA
326 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
87210231 ATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
391 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
*
87210295 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCAATCA
456 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
87210353 CAATCCTAATTGTCCAAACCTACTTGTAAT--CAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * * *
87210416 CCTAAAAACAGGTCTACTAGTTTTGAGTAAGTTTATTGGGTTCCGGGTGAAAGTTAAGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
87210481 CGGGTTTACAAGTCA-TT-TTTAAAAAAAAATTAGTTAGCTTAATTTCATGTGAAAATCGGTAAA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
* *
87210544 TAATATTCCGGAATATAAAAATATATTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
195 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
*
87210609 TAAAA-AAATATTTTATTGAAAAATAAATGAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
260 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* *** * *
87210673 ACTAAATAGGTATATAATATTCCGAAAAATAATTCTTTTTTTAAAAAAATATCACGAATATCATG
325 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
87210738 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATAGTT
390 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATA-TT
* * *
87210803 TTTC-CTTTCCTTTCCAGAACACCAAATTATGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
87210862 CAATCCTAATTGTCCAAACCTACTTCTAATCGCAAACTTTCCAAAGTATGTTGT
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGT
87210916 AACACCCCGA
Statistics
Matches: 5364, Mismatches: 187, Indels: 148
0.94 0.03 0.03
Matches are distributed among these distances:
498 74 0.01
499 148 0.03
500 170 0.03
501 257 0.05
502 589 0.11
503 520 0.10
504 421 0.08
505 138 0.03
506 108 0.02
507 409 0.08
508 350 0.07
509 575 0.11
510 375 0.07
511 819 0.15
512 210 0.04
513 26 0.00
514 175 0.03
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (513 bp):
CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
CGGGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
Found at i:87211797 original size:27 final size:27
Alignment explanation
Indices: 87211767--87211850 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
87211757 ATTACCAAAG
*
87211767 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTATCGTTT
* * * *
87211794 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTATCGTTT
*
87211821 TACCCTCAATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTATCGTTT
87211848 TAC
1 TAC
87211851 GCTTGATTGT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTATCGTTT
Found at i:87211920 original size:27 final size:27
Alignment explanation
Indices: 87211890--87211985 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
87211880 TGTAAGATAG
***
87211890 AATTACCAAAATACCACTGGTTTG-AGA
1 AATTACCAAAATACCACCAATTTGTA-A
* *
87211917 AATTACCGAAATACCCCCAATTTGTAA
1 AATTACCAAAATACCACCAATTTGTAA
**
87211944 AATTACCAAAATACC-CCTAATTTACAA
1 AATTACCAAAATACCACC-AATTTGTAA
87211971 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
87211986 CTTGACTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 4 0.07
27 53 0.91
28 1 0.02
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (27 bp):
AATTACCAAAATACCACCAATTTGTAA
Found at i:87211986 original size:27 final size:27
Alignment explanation
Indices: 87211916--87211986 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
87211906 CTGGTTTGAG
* **
87211916 AAATTACCGAAATACCCCCAATTTGTA
1 AAATTACAGAAATACCCCCAATTTACA
*
87211943 AAATTACCA-AAATACCCCTAATTTACA
1 AAATTA-CAGAAATACCCCCAATTTACA
87211970 AAATTACAGAAATACCC
1 AAATTACAGAAATACCC
87211987 TTGACTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.05
27 35 0.92
28 1 0.03
ACGTcount: A:0.46, C:0.25, G:0.04, T:0.24
Consensus pattern (27 bp):
AAATTACAGAAATACCCCCAATTTACA
Found at i:87213010 original size:25 final size:25
Alignment explanation
Indices: 87212974--87213043 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
87212964 AGGAAGTGCT
*
87212974 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTCTGCCCCAGTTTACCA
* * *
87212999 AAAAGGGATCTGCCACAGTTTATCA
1 AAAAGGGCTCTGCCCCAGTTTACCA
*
87213024 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTCTGCCCCAGTT
87213044 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTCTGCCCCAGTTTACCA
Found at i:87213056 original size:24 final size:24
Alignment explanation
Indices: 87213024--87213070 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
87213014 CAGTTTATCA
**
87213024 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
87213047 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
87213071 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:87213250 original size:42 final size:42
Alignment explanation
Indices: 87213191--87213282 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
87213181 TAGTCTCCCC
** * *
87213191 AAATGGGCTTGCATACAT-TCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTACATATGATATTG
87213233 AAATGGGCTTGCATACATCTATTGACATTACATATGATATTG
1 AAATGGGCTTGCATACATCTATTGACATTACATATGATATTG
87213275 AAATGGGC
1 AAATGGGC
87213283 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTACATATGATATTG
Found at i:87213341 original size:31 final size:31
Alignment explanation
Indices: 87213306--87213415 Score: 193
Period size: 31 Copynumber: 3.5 Consensus size: 31
87213296 CGTTTACAAT
*
87213306 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
87213337 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
*
87213368 AAAGGCTTTGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
*
87213399 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
87213416 AACCGTTAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATTTGATTTATGA
Found at i:87216440 original size:511 final size:513
Alignment explanation
Indices: 87214171--87217135 Score: 4855
Period size: 510 Copynumber: 5.8 Consensus size: 513
87214161 GGGTGTTACA
* * *
87214171 TATGTTGTGTTTGTAAAGCCCTAAAAATAGGTCTACTAGTTTTGGGTAAGTTTATCGGGTTCCGA
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
87214236 GCGAAAGCTAGGAGTTAATCGGGTTTACTAGTAATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* *
87214301 AATTTAAAAATCGGTAAATAATATTCC-GAAATACAAAAATATTTTTAGAGAAATCAATTTTATG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAA-ATAAAAATATTTTTAGAGAAATCAATTTTATG
* ***
87214365 GTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAAGTAAAATGTTTTTTCATT
195 GTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATT
* *
87214430 GAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAATTTTTTTTA-AA
260 GAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAA
*
87214494 AAATATCACGAATATCATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATTCTTCCACG
325 AAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACG
*
87214559 GGAGTATCGCCCAATATTTTCCTCTTTCCATTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
390 GGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
* **
87214624 AGCTCTTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCATAAATTTTCCAAAG
455 AGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
* * *
87214683 TATGTTGTGTTTATAACACCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTA-CTGGGTTACG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATC-GGGTTCCG
* *
87214747 GGTGAAAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAAATTACTTAGCTTAAT
65 GGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTT-AAAAAAAATTAGTTAGCTTAAT
* *
87214812 TTCATTTAAAAATCTGTAAATAATATTCTGGAAAATAAAAATATTTTT-GAGAAATCAATTTTAT
129 TTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTAT
* *
87214876 GGTTTT-AATTTTTTTTGGTTAAAATAAATATTTCATTGAAAAA-AAATTAAAATGGGGTTTCAT
194 GGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCAT
*
87214939 TGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAATTAAAAATATTTTTAGA
259 TGAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGA
* *
87215004 AAAATATCACGAACATCATGAATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCAA
324 AAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCAC
* * * *
87215068 GCGAGTATCGCCTAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTTTGCTTATCTTTGATAG
389 GGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAG
* *
87215133 AAGCTCCTCGATCACAATCCTAATTGTGCAAACCTACTTGTAATCACAAATTTTCCAAAG
454 AAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
* * *
87215193 AATGTTGTGTTTGTAAAGCCCTAAAAATTA-GTCTACTAGTTTTGAGTAATTTTATCGGGTTCCG
1 TATGTTGTGTTTGTAACGCCCTAAAAA-TAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCG
*
87215257 GGTGAAAGCTAGGAGTTAATCGGGATTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATT
65 GGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATT
* * *
87215322 TCATTTAAAAATCGGTAAATAATATTCCAGAAGATAAAAATATTTTTAGAGATATCAATTTTATG
130 TCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATG
* * *
87215387 GTTTTAAATATTTTGTGGTTAAAATAAATATTTTATGGAAAATTAAATTAAAATGGGGTTTCATT
195 GTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATT
* *
87215452 GAGAGAAGTTACAATATTAACTAAATTGGTATATAATATTCCTGAAAATAAAAATATTTTTAGAA
260 GAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAA
* * * *
87215517 AAATATCACAAATATCAGGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCAGG
325 AAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACG
87215582 GGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
390 GGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
* * *
87215647 AGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATTGTAAATTTTCCATAG
455 AGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
* * *
87215706 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCGACTAGTTTTGAGTAAGTTTACCGGGTTCCAG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
87215771 GTTAAAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAA-TAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* *
87215835 CATTTAAAAATTGGTAAATAATATTCCGGAAAATTAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
87215900 TTTTAAATATTTTTTGGTTAAAA-AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* *
87215964 AGAGAAGTTACAATATTAACTAAAGAGTTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* ** *
87216029 AGTATCACGAATATGTTGAATACTAATACCCCCATCCTTTTAGGTTGACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* *
87216094 GAGTATC-CCCAATATTTTTCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAA
391 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
*
87216158 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCTAAAG
456 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
* * *
87216216 TATGTTGTGTTTGTAACTCTCTAAAAATAGGTCTACTAG-TTTGAGTAAGTGTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
87216280 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTTATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * *
87216345 CATTTAAAAATTGGTAAATTATATTACGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
87216410 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* * *
87216475 AGAGAAGTTACAATATTAACTAATTAGGTATATAAAATTACGGAAAATAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
*
87216540 AATATCACGAATATCATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* * *
87216605 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATTTTTTATACAA
391 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
* *
87216670 GCCCCTCGATCACAATCTTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
456 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
*
87216728 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTAGTAGTTTTGAGTAAGTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* * *
87216793 GTAAAAGCTAGGAGTTAATCGGGTTTACTAGTCA--T-TTTAAAAAAAAATAGTTAGCTTACTTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* **
87216855 CGTTTAAAAATCGGTAAATAATATTCCAAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* * * * * *
87216920 ATTTAAATAATTTTTGGTTAAAATAAATATTTTATTGAAAAATAAGTAAAAATGAGGTTTAATTG
196 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
*
87216985 AGGGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
261 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* *
87217050 AAAATCACAAATATCATGAATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
326 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
87217114 GAGTATCGCCCAATATTTTCCT
391 GAGTATCGCCCAATATTTTCCT
87217136 ATTAGTTACT
Statistics
Matches: 2276, Mismatches: 162, Indels: 33
0.92 0.07 0.01
Matches are distributed among these distances:
509 190 0.08
510 814 0.36
511 434 0.19
512 468 0.21
513 366 0.16
514 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (513 bp):
TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
Found at i:87216945 original size:16 final size:18
Alignment explanation
Indices: 87216905--87216945 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
87216895 ATTTTTAGAG
*
87216905 AAATCAATTTTATGGATTT
1 AAAT-AATTTTATGGATTA
87216924 AAATAATTTT-TGG-TTA
1 AAATAATTTTATGGATTA
87216940 AAATAA
1 AAATAA
87216946 ATATTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 8 0.38
17 3 0.14
18 6 0.29
19 4 0.19
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (18 bp):
AAATAATTTTATGGATTA
Found at i:87218777 original size:37 final size:37
Alignment explanation
Indices: 87218736--87218809 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
87218726 ACAGAGGCTG
87218736 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
87218773 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
87218810 CAATTTGATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.35
Consensus pattern (37 bp):
TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
Found at i:87218980 original size:50 final size:50
Alignment explanation
Indices: 87218919--87219026 Score: 162
Period size: 50 Copynumber: 2.2 Consensus size: 50
87218909 TACCTAAATG
* * * *
87218919 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCGGATTTATTTTGACTA
1 ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
* *
87218969 ATGTGCTCAACTCTACTTAGTTCAACAGCCTTTCAGATTTATTCTAACTG
1 ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
87219019 ATGTGCTC
1 ATGTGCTC
87219027 CATTTTGATT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (50 bp):
ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
Found at i:87221666 original size:20 final size:19
Alignment explanation
Indices: 87221633--87221670 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
87221623 TGAGCAAACT
87221633 TTTTCTTGCTTCTTTATTTA
1 TTTTCTTGCTTC-TTATTTA
87221653 TTTTCTT-CTCTCTTATTT
1 TTTTCTTGCT-TCTTATTT
87221671 TTTACATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.08, C:0.18, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTTCTTGCTTCTTATTTA
Found at i:87227797 original size:19 final size:19
Alignment explanation
Indices: 87227773--87227870 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
87227763 AATCTTTAAG
87227773 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
87227792 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87227811 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87227828 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
87227847 GATATGTAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
87227868 GAT
1 GAT
87227871 CTTGTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.22
19 47 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:87227802 original size:36 final size:35
Alignment explanation
Indices: 87227762--87227881 Score: 100
Period size: 36 Copynumber: 3.2 Consensus size: 35
87227752 TATGGAAATA
87227762 TAATCTTTAAGGATATGCAATCTTAGATATGATATG
1 TAATCTTTAA-GATATGCAATCTTAGATATGATATG
87227798 TAATC-TT-AGATATGATACAATCTTAGATATGATATG
1 TAATCTTTAAGATATG---CAATCTTAGATATGATATG
* * * *
87227834 CAATCTTAGATATGATATGTAATCTTGAAGATATGATCTTG
1 TAATCTT---TAAGATATGCAATCTT--AGATATGAT-ATG
87227875 TAATCTT
1 TAATCTT
87227882 GGAGATTTAA
Statistics
Matches: 68, Mismatches: 5, Indels: 17
0.76 0.06 0.19
Matches are distributed among these distances:
33 6 0.09
34 1 0.01
35 2 0.03
36 28 0.41
37 1 0.01
38 6 0.09
40 10 0.15
41 14 0.21
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (35 bp):
TAATCTTTAAGATATGCAATCTTAGATATGATATG
Found at i:87227879 original size:22 final size:21
Alignment explanation
Indices: 87227773--87227887 Score: 106
Period size: 19 Copynumber: 5.9 Consensus size: 21
87227763 AATCTTTAAG
*
87227773 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
87227792 GATATGTAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
87227811 GATA--CAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
87227828 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
87227847 GATATGTAATCTTGAAGATAT
1 GATATGTAATCTTGAAGATAT
* *
87227868 GATCTTGTAATCTTGGAGAT
1 GAT-ATGTAATCTTGAAGAT
87227888 TTAATTTGGA
Statistics
Matches: 86, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.19
19 47 0.55
21 9 0.10
22 14 0.16
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (21 bp):
GATATGTAATCTTGAAGATAT
Found at i:87228895 original size:22 final size:22
Alignment explanation
Indices: 87228843--87228887 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
87228833 AGATTTCAAA
87228843 ACATAGTGTCCTAACTTACTGG
1 ACATAGTGTCCTAACTTACTGG
87228865 ACATAGTGTCCTAACTTACTGG
1 ACATAGTGTCCTAACTTACTGG
87228887 A
1 A
87228888 TATGGTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (22 bp):
ACATAGTGTCCTAACTTACTGG
Found at i:87230280 original size:43 final size:43
Alignment explanation
Indices: 87230232--87230455 Score: 121
Period size: 43 Copynumber: 5.3 Consensus size: 43
87230222 CACCTTAATC
*
87230232 CCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * * * *
87230275 CCCTAAACAGTAGTGG-AGCAGATCGAAGA-CT-C-G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
* *
87230316 CCCTAAGCGGTAGGGTAACAGGTTAAATTTGTAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * * *
87230359 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C--ACCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
* * * *
87230400 CCTTAAGCGGTAGGGTAACAGGTTAGATTTGCAGATCTTATAT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
*
87230443 CCCTAAGTAGTAG
1 CCCTAAGCAGTAG
87230456 TGAAGCAGAT
Statistics
Matches: 127, Mismatches: 34, Indels: 40
0.63 0.17 0.20
Matches are distributed among these distances:
39 2 0.02
40 9 0.07
41 40 0.31
42 13 0.10
43 51 0.40
44 10 0.08
45 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
Found at i:87230314 original size:84 final size:84
Alignment explanation
Indices: 87230173--87230761 Score: 780
Period size: 84 Copynumber: 7.0 Consensus size: 84
87230163 TCTTAGACCG
* *
87230173 AATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAATCCCCTAA
1 AATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAA
*
87230238 GTAGTAGGGTAACAGGTTA
66 GCAGTAGGGTAACAGGTTA
*
87230257 AATTTGCAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAA
1 AATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAA
*
87230322 GCGGTAGGGTAACAGGTTA
66 GCAGTAGGGTAACAGGTTA
* * *
87230341 AATTTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCACCTTAATCCCTTAA
1 AATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAA
*
87230406 GCGGTAGGGTAACAGGTTA
66 GCAGTAGGGTAACAGGTTA
* * * * *
87230425 GATTTGCAGATCTTATATCCCTAAGTAGTAGTGAAGCAGATCGAAGACTCGCCTTAATACCCTAA
1 AATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAA
*
87230490 ACAGTAGGGTAACAGG---
66 GCAGTAGGGTAACAGGTTA
* * * *
87230506 --TTCGCAGATCTTATCTCCCTAAGCAGTAGCGAAGCAGATCGACGACGACTCTCCTTAATCCCC
1 AATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTCGCCTTAATCCCC
*
87230569 TAAGTAGTAGGGTAACAGGTTA
63 TAAGCAGTAGGGTAACAGGTTA
* * * *
87230591 AATTTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACCCGTCTTAATCCCCTAA
1 AATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAA
*
87230656 ACAGTAGGGTAACAGGTTA
66 GCAGTAGGGTAACAGGTTA
* * * * *
87230675 AATTTGCAAATCTTA--TCCCTAAGCAGTAGCGGAGTAGATCAAAGAAGA-TGTGCCTTAACCCC
1 AATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---GAAGACT-CGCCTTAATCCC
*
87230737 CTAAGCAGCAGGGTAACAGGTTA
62 CTAAGCAGTAGGGTAACAGGTTA
87230760 AA
1 AA
87230762 GTATAACAGA
Statistics
Matches: 445, Mismatches: 48, Indels: 23
0.86 0.09 0.04
Matches are distributed among these distances:
79 38 0.09
81 1 0.00
82 54 0.12
84 277 0.62
85 38 0.09
87 37 0.08
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
AATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAA
GCAGTAGGGTAACAGGTTA
Found at i:87241853 original size:1 final size:1
Alignment explanation
Indices: 87241847--87241912 Score: 78
Period size: 1 Copynumber: 66.0 Consensus size: 1
87241837 CTTCTATTTC
* ** * * *
87241847 AAAAAAAAAAAGAAAAAAGGAAAAAAAAAAAGAAAAAGAAAAAAAAAAAAAAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
87241912 A
1 A
87241913 TGGAAAGGCC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (1 bp):
A
Found at i:87241872 original size:20 final size:19
Alignment explanation
Indices: 87241847--87241912 Score: 98
Period size: 19 Copynumber: 3.4 Consensus size: 19
87241837 CTTCTATTTC
87241847 AAAAAAAAAAAGAAAAAAGG
1 AAAAAAAAAAAGAAAAAA-G
87241867 AAAAAAAAAAAG-AAAAAG
1 AAAAAAAAAAAGAAAAAAG
*
87241885 AAAAAAAAAAAAAAAAAAAG
1 -AAAAAAAAAAAGAAAAAAG
87241905 AAAAAAAA
1 AAAAAAAA
87241913 TGGAAAGGCC
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
18 1 0.02
19 24 0.56
20 18 0.42
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAGAAAAAAG
Found at i:87243008 original size:84 final size:84
Alignment explanation
Indices: 87242860--87243482 Score: 841
Period size: 84 Copynumber: 7.4 Consensus size: 84
87242850 CAAAATTCAG
*
87242860 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
87242925 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
87242944 CACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAACAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
87243009 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
87243028 CGCCTTAAT-CCCTAAGCGGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
87243092 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * * * * *
87243111 CACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAGATTTGCAGATCTTATATCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
87243176 GTGAAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
87243195 CGCCTTAATACCCTAAACAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
87243255 GCGAAGCAGATCGACGACAACT
66 GTGGAGCAGATCGA--A-GACT
* * *
87243277 CGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
87243342 GTGGAGCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACT
* * *
87243361 CGTCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAAATCTTA--TCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
87243424 GCGGAGTAGATCAAAGAAGA-T
66 GTGGAGCAGATC---GAAGACT
* * *
87243445 GTGCCTTAACCCCCTAAGCAGCAGGGTAACAGGTTAAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
87243483 GTATAACAGA
Statistics
Matches: 476, Mismatches: 50, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
79 38 0.08
81 1 0.00
82 54 0.11
83 78 0.16
84 230 0.48
85 38 0.08
87 37 0.08
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:87243153 original size:167 final size:168
Alignment explanation
Indices: 87242860--87243482 Score: 850
Period size: 167 Copynumber: 3.7 Consensus size: 168
87242850 CAAAATTCAG
* *
87242860 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
87242925 GTGGAGCAGATCGAAGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGAT
66 GCGGAGCAGATCGAAGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGAT
**
87242990 CTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACT
131 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACT
* * *
87243028 CGCCTTAAT-CCCTAAGCGGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * ** *
87243092 GTGGAGCAGATCGAAGACTCACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAGATTTGCAGAT
66 GCGGAGCAGATCGAAGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGAT
* *
87243157 CTTATATCCCTAAGTAGTAGTGAAGCAGATCGAAGACT
131 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACT
* *
87243195 CGCCTTAATACCCTAAACAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * * *
87243255 GCGAAGCAGATCGACGACAACTCGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTACA
66 GCGGAGCAGATCGA--A-GACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCA
*
87243320 GATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACC
128 GATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACT
* *
87243361 CGTCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAAATCTTA--TCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* ** * * *
87243424 GCGGAGTAGATCAAAGAAGA-TGTGCCTTAACCCCCTAAGCAGCAGGGTAACAGGTTAAA
66 GCGGAGCAGATC---GAAGACT-CACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAA
87243483 GTATAACAGA
Statistics
Matches: 406, Mismatches: 36, Indels: 25
0.87 0.08 0.05
Matches are distributed among these distances:
163 38 0.09
165 1 0.00
166 108 0.27
167 158 0.39
168 30 0.07
169 57 0.14
170 1 0.00
171 11 0.03
172 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (168 bp):
CGCCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GCGGAGCAGATCGAAGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGAT
CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACT
Found at i:87245599 original size:19 final size:19
Alignment explanation
Indices: 87245572--87245639 Score: 113
Period size: 19 Copynumber: 3.7 Consensus size: 19
87245562 AATCTTTAAG
*
87245572 GATAAGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87245591 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87245610 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87245627 GATATGCAATCTT
1 GATATGCAATCTT
87245640 GAAGATATGT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
17 17 0.37
19 29 0.63
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:87245608 original size:14 final size:15
Alignment explanation
Indices: 87245591--87245628 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
87245581 TCTTAGATAT
87245591 GATATG-CAATCTTA
1 GATATGACAATCTTA
87245605 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
87245622 GATATGA
1 GATATGA
87245629 TATGCAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:87261890 original size:18 final size:19
Alignment explanation
Indices: 87261832--87261884 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
87261822 TCTATTTCAA
*
87261832 AAAAAAAAG-GTAAAAAGAT
1 AAAAAAAAGAG-AAAAAGAG
87261851 AAAAAAAAGAGAAAAAGAG
1 AAAAAAAAGAGAAAAAGAG
87261870 AAAAAAAAGAGAAAA
1 AAAAAAAAGAGAAAA
87261885 TAGAAATAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 31 0.97
20 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (19 bp):
AAAAAAAAGAGAAAAAGAG
Found at i:87261902 original size:11 final size:11
Alignment explanation
Indices: 87261843--87261901 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
87261833 AAAAAAAGGT
*
87261843 AAAAAGATAAA
1 AAAAAGAGAAA
87261854 AAAAAGAG---
1 AAAAAGAGAAA
87261862 AAAAAGAGAAA
1 AAAAAGAGAAA
87261873 AAAAAGAGAAA
1 AAAAAGAGAAA
*
87261884 ATAGAAATAGAAA
1 A-A-AAAGAGAAA
87261897 AAAAA
1 AAAAA
87261902 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 8 0.20
11 22 0.54
12 2 0.05
13 9 0.22
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (11 bp):
AAAAAGAGAAA
Found at i:87262991 original size:84 final size:84
Alignment explanation
Indices: 87262850--87263460 Score: 896
Period size: 84 Copynumber: 7.3 Consensus size: 84
87262840 AAAATCCAGT
* * *
87262850 GCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTACAGATCTTATTTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
87262915 TGGAGTAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
87262934 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
87262999 TGG-GCAGATCAAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
87263017 GCCTTAATCCCCTAAGCAGAAGGGTAACAGGTTAAATTTGCAGATCTTATTTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
87263082 TGGAACAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * *
87263101 GCCTTAATCCCTTAAGCGGTAGGGTAACGGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
87263166 TGGAGTAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * *
87263185 GTCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGTAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
87263245 CGAAGCAGATCGACAACGACTC
66 TGGAGCAGATCG--AA-GACTC
*
87263267 GCCTTAATCCCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
87263332 TGGAACAGATCGAAGACCC
66 TGGAGCAGATCGAAGACTC
87263351 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
87263414 CGGAGCAGATCAAAGACGATGC
66 TGGAGCAGATCGAAGAC--T-C
* *
87263436 ACCTTAACCCCCTAAGCAGTAGGGT
1 GCCTTAATCCCCTAAGCAGTAGGGT
87263461 CCAAGATGAT
Statistics
Matches: 475, Mismatches: 40, Indels: 23
0.88 0.07 0.04
Matches are distributed among these distances:
79 36 0.08
81 2 0.00
82 62 0.13
83 79 0.17
84 234 0.49
85 26 0.05
87 36 0.08
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTC
Found at i:87263126 original size:167 final size:168
Alignment explanation
Indices: 87262850--87263460 Score: 889
Period size: 167 Copynumber: 3.6 Consensus size: 168
87262840 AAAATCCAGT
* *
87262850 GCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTACAGATCTTATTTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTTCCCTAAGCAGTAG
**
87262915 TGGAGTAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATC
66 TGGAACAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATC
*
87262980 TTATCTCCCTAAGCAGTAGTGG-GCAGATCAAAGACTC
131 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
*
87263017 GCCTTAATCCCCTAAGCAGAAGGGTAACAGGTTAAATTTGCAGATCTTATTTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTTCCCTAAGCAGTAG
* * *
87263082 TGGAACAGATCGAAGACTCGCCTTAATCCCTTAAGCGGTAGGGTAACGGGTTAAATTTGCAGATC
66 TGGAACAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATC
*
87263147 TTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACTC
131 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
* * * *
87263185 GTCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGTAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTTCCCTAAGCAGTAG
* *
87263245 -CGAAGCAGATCGACAACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGATTAAATTTGCA
66 TGGAA-CAGATCG--AA-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
* *
87263309 GATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACCC
127 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
87263351 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTTCCCTAAGCAGTAG
* * * * *
87263414 CGGAGCAGATCAAAGACGATGCACCTTAACCCCCTAAGCAGTAGGGT
66 TGGAACAGATCGAAGAC--T-CGCCTTAATCCCCTAAGCAGTAGGGT
87263461 CCAAGATGAT
Statistics
Matches: 399, Mismatches: 31, Indels: 26
0.88 0.07 0.06
Matches are distributed among these distances:
162 3 0.01
163 33 0.08
165 2 0.01
166 115 0.29
167 146 0.37
168 43 0.11
169 44 0.11
170 2 0.01
171 11 0.03
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (168 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATTTCCCTAAGCAGTAG
TGGAACAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATC
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
Found at i:87263405 original size:41 final size:41
Alignment explanation
Indices: 87262943--87263413 Score: 141
Period size: 41 Copynumber: 11.3 Consensus size: 41
87262933 CGCCTTAATC
*
87262943 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTA--T
* * ** *
87262986 CCCTAAGCAGTAGTGG--GCAGATCAAAGACT-C-G-CCTTAAT
1 CCCTAAGCAGTAG-GGTAACAGATTAAA-TTTGCAGATCTT-AT
* *
87263025 CCCCTAAGCAGAAGGGTAACAGGTTAAATTTGCAGATCTTATTT
1 -CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTA--T
* * *
87263069 CCCTAAGCAGTAGTGG-AACAGATCGAAGA-CT-C-G-CCTTAAT
1 CCCTAAGCAGTAG-GGTAACAGAT-TAA-ATTTGCAGATCTT-AT
* * *
87263109 CCCTTAAGCGGTAGGGTAACGGGTTAAATTTGCAGATCTTATCT
1 CCC-TAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTA--T
** * *
87263153 CCCTAAGCAGTAGTGG-AGTAGATCGAAGA-CT-C-G-TCTTAAT
1 CCCTAAGCAGTAG-GGTAACAGAT-TAA-ATTTGCAGATCTT-AT
* * *
87263193 CCCCTAAGCAGTAGGGTAACAG-----GTTCGTAGATCTTATCT
1 -CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTA--T
* * * * *
87263232 CCCTAAGCAGTAGCG-AAGCAGATCGACAA--CGACTCG-CCTTAAT
1 CCCTAAGCAGTAGGGTAA-CAGAT-TA-AATTTG-C-AGATCTT-AT
87263275 CCCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTATCT
1 -CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTA--T
** *** * *
87263319 CCCTAAGCAGTAGTGG-AACAGATCGAA-GACCCG-CCTTAAT
1 CCCTAAGCAGTAG-GGTAACAGATTAAATTTGCAGATCTT-AT
*
87263359 CCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
1 -CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTAT
87263401 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
87263414 CGGAGCAGAT
Statistics
Matches: 307, Mismatches: 62, Indels: 120
0.63 0.13 0.25
Matches are distributed among these distances:
37 4 0.01
38 21 0.07
39 5 0.02
40 31 0.10
41 85 0.28
42 27 0.09
43 85 0.28
44 43 0.14
45 6 0.02
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGATTAAATTTGCAGATCTTAT
Found at i:87264224 original size:19 final size:19
Alignment explanation
Indices: 87264200--87264297 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
87264190 AATCTTTAAG
87264200 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87264219 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87264238 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87264255 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87264274 GATATGCAATCTTGCAGATAT
1 GATATGCAATCTT--AGATAT
87264295 GAT
1 GAT
87264298 CTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
21 9 0.12
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:87264230 original size:36 final size:35
Alignment explanation
Indices: 87264190--87264297 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 35
87264180 ATGGAAATAT
87264190 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
87264226 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
87264262 AATCTTAGATATGATATGCAATCTTGCAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
87264298 CTTGTAATCT
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 28 0.46
37 1 0.02
38 7 0.11
40 10 0.16
41 6 0.10
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:87267391 original size:93 final size:93
Alignment explanation
Indices: 87267232--87267404 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
87267222 GGGATATTTG
* * * *
87267232 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATAGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCATTGAG
87267297 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
* * *
87267325 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCATTGAG
87267390 TTGAGTCTGAGTTCG
66 TTGAGTCTGAGTTCG
87267405 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCATTGAG
TTGAGTCTGAGTTCGTGAGATGTAACTA
Found at i:87267409 original size:46 final size:46
Alignment explanation
Indices: 87267237--87267411 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
87267227 ATTTGGGCAT
* * * *
87267237 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATAGATGCGAGCGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
87267283 CCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
87267328 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
87267376 CCGAGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87267412 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 26 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:87269118 original size:66 final size:66
Alignment explanation
Indices: 87268994--87269118 Score: 144
Period size: 66 Copynumber: 1.9 Consensus size: 66
87268984 TTTAGTAGCC
** ** * *
87268994 TCACACAGCCTAGCACATGGGCGTATGGCTTGAATGTGTGTCGCAAGTCAGTATGCTCATTATTT
1 TCACACAGCCTAGCACAAAGGCGTATGGCTTGAACATGTGACGCAAGTCAGTAAGCTCATTATTT
87269059 T
66 T
* * * *
87269060 TCACACGGCCTAGCACAAAGGCGTGTGGCTTGACCATGTGAC-CTAAGTTAGTAAGCTCA
1 TCACACAGCCTAGCACAAAGGCGTATGGCTTGAACATGTGACGC-AAGTCAGTAAGCTCA
87269119 CTAGTTTGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
65 1 0.02
66 47 0.98
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (66 bp):
TCACACAGCCTAGCACAAAGGCGTATGGCTTGAACATGTGACGCAAGTCAGTAAGCTCATTATTT
T
Found at i:87270941 original size:18 final size:18
Alignment explanation
Indices: 87270920--87270954 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
87270910 ATTGGGGTTG
87270920 ATAGATTGTGAGATGAAA
1 ATAGATTGTGAGATGAAA
*
87270938 ATAGATTGTTAGATGAA
1 ATAGATTGTGAGATGAA
87270955 CACATAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (18 bp):
ATAGATTGTGAGATGAAA
Found at i:87271068 original size:43 final size:42
Alignment explanation
Indices: 87271015--87271299 Score: 194
Period size: 43 Copynumber: 6.6 Consensus size: 42
87271005 TTGGTATATG
*
87271015 CAATCATGCACTATGTGTGACAGTATATTTTCTTT-GATTTATC
1 CAATGATGCACTATGTGTG-CAGTATATTTTCTTTAG-TTTATC
* * **
87271058 CGATGATGCACTGTGTGTGCCAACATATTTTCTTTAGTTTATC
1 CAATGATGCACTATGTGTG-CAGTATATTTTCTTTAGTTTATC
* * *
87271101 CAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATC
1 CAATGATGCACTATGTGTGC-AGTATATTTTCTTTAGTTTATC
* * ** * *
87271144 CAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATC
1 CAATGATGCACTATGTG-TGCAGTATATTTTCTTTAGTTTATC
* * ** * *
87271187 CAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATC
1 CAATGATGCACTATGTGTGC-AGTATATTTTCTTTAGTTTATC
** * * * * ** * *
87271230 TGATAATGCACTGTATTTGCTAGTATAGATACTTCAGTTTATC
1 CAATGATGCACTATGTGTGC-AGTATATTTTCTTTAGTTTATC
* * *
87271273 CGATGATGCACTGTATGTGCCAGTATA
1 CAATGATGCACTATGTGTG-CAGTATA
87271300 GATATTTCAG
Statistics
Matches: 203, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
42 3 0.01
43 196 0.97
44 4 0.02
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (42 bp):
CAATGATGCACTATGTGTGCAGTATATTTTCTTTAGTTTATC
Found at i:87271300 original size:43 final size:43
Alignment explanation
Indices: 87271052--87271377 Score: 310
Period size: 43 Copynumber: 7.6 Consensus size: 43
87271042 TTTTCTTTGA
* * * ** ** * *
87271052 TTTATCCGATGATGCACTGTGTGTGCCAACATATTTTCTTTAG
1 TTTATCCAATGATGCACTGTATGTGCTAGTATAGATACTTCAG
* * * ** *
87271095 TTTATCCAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAG
1 TTTATCCAATGATGCACTGTATGTGCTAGTATAGATACTTCAG
* * * *
87271138 CTTATCCAATGATGCACTATATGTTCCAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTGTATGTGCTAGTATAGATACTTCAG
* * **
87271181 TTTATCCAATGATGCACTATATATGCTAGTATAGATACTTTGG
1 TTTATCCAATGATGCACTGTATGTGCTAGTATAGATACTTCAG
** * *
87271224 TTTATCTGATAATGCACTGTATTTGCTAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTGTATGTGCTAGTATAGATACTTCAG
* * *
87271267 TTTATCCGATGATGCACTGTATGTGCCAGTATAGATATTTCAG
1 TTTATCCAATGATGCACTGTATGTGCTAGTATAGATACTTCAG
* * * * *
87271310 ATTATCTAATTATGCATTGTATGTGCTAGTATAGATACTTCAA
1 TTTATCCAATGATGCACTGTATGTGCTAGTATAGATACTTCAG
* * *
87271353 TTTATCTAATTATGCATTGTATGTG
1 TTTATCCAATGATGCACTGTATGTG
87271378 TTAGGACAAT
Statistics
Matches: 241, Mismatches: 42, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 241 1.00
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.41
Consensus pattern (43 bp):
TTTATCCAATGATGCACTGTATGTGCTAGTATAGATACTTCAG
Found at i:87275669 original size:47 final size:47
Alignment explanation
Indices: 87275601--87275723 Score: 167
Period size: 47 Copynumber: 2.6 Consensus size: 47
87275591 GATAAGTGCG
* * *
87275601 TATACCATGG-CCGTAGCCAAATCAAGGTAACTTATCCCATAGTACC
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAATACC
* *
87275647 TATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAAAATACC
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAATACC
* * *
87275694 TATATCAAGGCCCGTAGCCAAATCTAGGTA
1 TATACCATGGCCCGTAGCCAAATCAAGGTA
87275724 TTATTCCACC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
46 10 0.15
47 58 0.85
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (47 bp):
TATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAATACC
Found at i:87282958 original size:512 final size:512
Alignment explanation
Indices: 87281735--87287850 Score: 9569
Period size: 512 Copynumber: 12.0 Consensus size: 512
87281725 AACCTTTGTC
*
87281735 CAATCCTAATTGTCCAAACTTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGT-ACAG
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAAC-G
* * *
87281799 CCATAAAAATAGGTCTACTAGTTTCGAGTAAGTTTATCGGGTTTCGGGTGAAAGCTAGGAGTTAA
65 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
*
87281864 TCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATGGGTAAA
130 TCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
* * * * * * *
87281929 TAATATTC-TAGAATATAAAAT-TTTTTAGAAAAATTAATATTATGGTTTAAAATCTTTTTTGGT
195 TAATATTCGGAAAATA-AAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
*
87281992 GAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* * *
87282057 ACTAAATAGGTATATAATATTCCGAAAAATGAAAATATATTTAGAAAAATATCACGAATATCATG
324 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
* * *
87282122 AATACTAATGCCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGGCCAATATTA
389 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
*
87282187 TCCTCTTTCCTTTCCAGACTACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * * *
87282246 CAATCCTAATAGTCCAAATCTACTTGAAATCGCTAATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * * *
87282311 CCTAAAAATAGGACTACTGGTTTTGAGTAAATTTATAGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
** *
87282376 CGGGTTTACTACACATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATAGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
87282441 AATATTCTGGAAAATAAAAATATTTTTAGA-AAATCAATTTTATGGTTTTAAATATTTTTTGGTT
196 AATATTC-GGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
87282505 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
** ** **
87282570 CTAAATACATATATAATATTAAGGAAAATAAAAATATTAATAGAAAAATATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
*
87282635 AAACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
*
87282699 CCACTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTC-AGTCA
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA-TCA
* * * *
87282757 CAATCCAAATTGTCTAAACCTACATGTAATCGCAAATTTTCCAAAGCATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * *
87282822 CCTAAAAATAGGACTTCTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGAAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
87282887 CGGGTTTACTAGTCAATTCTTGAAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAA
131 CGGGTTTACTAGTCATTTCTT-TAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
* *
87282952 TAATATTC-TAGAAATAAAAATATTTTTAGAAAAATCAATTTTATGGTTTTAAATATTTTTTGGT
195 TAATATTCGGA-AAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
87283016 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* *
87283081 ACTAAATAGGTATATAATATTCTGGAAAATAAAAATATTTTTAGAAAAATATCATGAATATCATG
324 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
* * * **
87283146 AATACTGATACCCCAATCCTTTTAGGCTAACACAAATTCTTCCACGGGAGTATCGCTAAATATTT
389 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
87283211 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGAT--C-A
* *
87283273 TTCTAATTGCCCAAACCTAATTGCCCAAACCTACTTGTCATCGCAAATTTTCCAAAGTATGTTGT
1 --C-AA-T-------CCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGT
87283338 GTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAA-TTTATCGGGTTCCGGGTGAAAGC
55 GTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGC
*
87283402 TAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAA
120 TAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAA
** * *
87283467 ACCCGGTAAATAATATTC-CAAAATAAAAATATTTTTGGAGAAATCAATTTT-TGGTTTTAAATA
185 AATCGGTAAATAATATTCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA
* * *
87283530 TTTTTTGGTTAAAATAAATATTTTAGTGAAAAATAAATTAAAATGGGATTTGATTGAGAGAAGTT
250 TTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTT
* ** * *
87283595 ACAATATTAACAAAATACATATGTAATATTCCGGAAAAT-AAAATATTTATAGAAAAATATCACG
315 ACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACG
* *
87283659 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGTGAATATCGC
380 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGC
*
87283724 CTAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
445 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
87283789 TCA
510 TCA
* * *
87283792 CAATCCTAATTGTCCAAACCTACATGTAATCACAAATTTTCCAAAGTATGTAGTGTTTGTAACG-
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* *
87283856 CCTGAAAAATAGGTCTACTAGTTTTGAGTGAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAA
66 CCT-AAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
** * *
87283921 TCGGGTTTACTACACATTTCTTTAAAAAAAATTAGTTAGCTTGATTTCATTTACAAATCGGTAAA
130 TCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
*
87283986 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATAAATTTTATGGTTTTAAATATTTTTTGGT
195 TAATATT-CGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
* *
87284051 TAAAAT-AATATTTCATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
87284115 ACTAAATAGGTATATAATATTCC-GAAAATTAAAAATATTTTTAGAAAAATATCACGAATATCAT
324 ACTAAATAGGTATATAATATTCCGGAAAA-TAAAAATATTTTTAGAAAAATATCACGAATATCAT
* *
87284179 GAATACTAATACCCCCATCCTTTTAGGTTGACACAAATTCTTCCACTGGAGTATCGCCCAATATT
388 GAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
*
87284244 TTCCTCTTTCC-TTCCTAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTTCTCGATCA
453 TTCCTCTTTCCTTTCC-AGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * *
87284304 CAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTAGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * * *
87284369 CTTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGTGTTCCGGGTGAATGCTTGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
** * *
87284434 CGGGTTTACTACCCATTTCTTTAAAAAAAAATTACTTAGCTTAATTTCATTTAAAAA-CGGTGAA
131 CGGGTTTACTAGTCATTTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
*
87284498 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGCT
195 TAATATT-CGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
* * * *
87284563 TAAAATAAGTATTTCATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATGA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* *
87284628 ACTGAAGAGGTATATAATATTCCGG-AAATAAAAATATTTTTAGAAAAATATCACGAATATCAT-
324 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
87284691 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
389 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
*
87284756 TCCTCTTTCCTTTCCA-ACCACCAAATTCTGCTTATCTAT-ATAGAAGCTCCTCGATCA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
87284813 CAATCCTAATTGTCCAAACCGACTTGTAATCGAAAATTTT-CAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* *
87284877 CCTAAAAATAGGTCTACTAGTTTTGAGTATGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
87284942 CAGGTTTACTAGTCATTTCTTTAAAAAAAAAATCGTTAGCTTAATTTCATTTAAAAATCGGTAAA
131 CGGGTTTACTAGTCATTTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
* *
87285007 TAATATTCCGAAAAATAAAAAATATTTTTAGAGAAATCAATTTTATGGTTTAAAATATTTTTTGG
195 TAATATT-CGGAAAAT-AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
*
87285072 TTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTT--AATATT
258 TTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATT
*
87285135 AACTAAATAGGTATATAATATTCCGGAAAATAAAAATA-TTTTAGAAAAATA-CAATGAATATCA
323 AACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATC-ACGAATATCA
*
87285198 TGAATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACGGGAGTATCGCCCAATAT
387 TGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATAT
* * * * *
87285263 TTTCCACTTTCTTTTCCAAACCACC-AATTCTGCTTATCTTTAATAGATGCTCCTCGATCA
452 TTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
87285323 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTT-TAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87285387 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
87285452 CAGGTTTACTAGT--TAT-TTAAAAAAAAATT-GTTAGCTTAATTTCATTT-AAAATCGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
**
87285512 AATATTCCAAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG-TTTAAATA-TTTTTGGTT
196 AATATT-CGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
87285575 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
*
87285640 CTAAATAGGTATATAATATTCTGGAAAATAAAAATA-TTTTAG-AAAATATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
* * *
87285703 ATACTAATACCCCCATTCTTTTAGGCTGACACAAATTCTTCCACGAGAGTATCGCCAAATATTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* *
87285768 CCTCTTTCCTTTCTAGACCACCAAATTCTGCTTATCATTT-ATAGAAGATCCTCGATCA
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATC-TTTGATAGAAGCTCCTCGATCA
*
87285826 CAATTCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
*
87285891 CCTAAAAATAGGTCTACTAGTTTTGAGTAA-TTTATCGGGTTCCGGGTGAAAGCTAGGACTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
87285955 CGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAACCGGCAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
87286020 AATATTCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
196 AATATTCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
*
87286085 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
* * *
87286150 TAAATACGTATATAATATTCCGGAAAATAAAAACA-TTTTAGAAAAATATCACAAATATCATGAA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
87286214 TACTAATA-CCCCATCCTTTTA-GCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
391 TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
*
87286277 CTCTTTCCTTTCCAGACCACAAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
456 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * *
87286334 CAATCCTAATTGTCCAAACCTACATGTAATCGCAAATTTTCCAAAGTATGTTCTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* *
87286399 CCTAAAAATAGTTCTACTAGTTTTGAGTACGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* ** * *
87286464 CGGGTTTACAAGTCA----TTTAACGAAAATTAGTTAGCCTAATTTCATTTAAAAATTGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* * * *
87286525 AATATTGCAGAAAATAAAAATATTTTTAGTGAAATCAATTTTACGGTTTTAAATATTTTTTGTTT
196 AATATT-CGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
87286590 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGA-AAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
* *
87286654 CTAAATA-GTATATGATATTCCGGAAAATAAAAATA-TTTTATAAAAATATCACGAATAT-ATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
*
87286716 ATACTAATACCCCCATCCTTTTAGGCTGACACAAAGTCTTCCACGGGAGTATCGCCCAATATTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* * * *
87286781 CCTCTTTCCTCTCTACACCACAAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
87286839 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGCTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * ** *
87286904 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTTCATGTGAAAGCTAGGAGTTTAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * * *
87286969 CGGGCTTACCAGTCATTTCCTTTTAAAAAAAATTCGTTATCTTAATTTCATTTAAAAATCGGTAA
131 CGGGTTTACTAGTCATTT-C-TTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAA
* *
87287034 ATAATATTCCGAAAA-AAAAATATTTTTAGAGGAATCAATTTTATGGTTTTAAATATTTTTTGGT
194 ATAATATTCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
* * *
87287098 TAAAATAAATATTTTCTTGATAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* * ** * *
87287163 ACTAAATAAGTATATAATATTTCAAAAAATAAAATTATTTTTAGAAAAATATCACGAATACCATG
324 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
87287228 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
389 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
** * *
87287293 TTTTCTTCCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCTATCA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * *
87287352 CAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTCTTTGTGACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * * *
87287417 CTTAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCAGGTTCCGAGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
** * *
87287482 CCAGTTTACTAGT-AATT-TTT-AAAAAAA-TAGTTAGCTTAATTTCATTTAAAAA-CTGGTAGA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATC-GGTAAA
*
87287542 TAATATTCTGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTTGT
195 TAATATTC-GGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
*
87287607 TAAAATAAATATTTTATTGAAAAATAAATTAAAAT---G-ATAATTGAGAGAAGTTACAATATTA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* * *
87287668 ACTAAATACGTATATCATATTCCGGAAAATAAAAATATTTATAGAAAAATATCACGAATATCATG
324 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
* *
87287733 AATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACAGGAGTATCGCCCAATATTT
389 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
*
87287798 TCCTCTGTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCT
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCT
87287851 AGTGTCACGG
Statistics
Matches: 5186, Mismatches: 342, Indels: 160
0.91 0.06 0.03
Matches are distributed among these distances:
501 63 0.01
502 104 0.02
503 224 0.04
504 126 0.02
505 507 0.10
506 125 0.02
507 100 0.02
508 484 0.09
509 623 0.12
510 331 0.06
511 713 0.14
512 830 0.16
513 475 0.09
514 2 0.00
515 2 0.00
516 3 0.00
517 1 0.00
518 1 0.00
519 3 0.00
520 2 0.00
522 147 0.03
523 108 0.02
524 29 0.01
525 48 0.01
526 52 0.01
527 83 0.02
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (512 bp):
CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
AATATTCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
Found at i:87283294 original size:14 final size:14
Alignment explanation
Indices: 87283275--87283305 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
87283265 GATCACAATT
87283275 CTAATTGCCCAAAC
1 CTAATTGCCCAAAC
87283289 CTAATTGCCCAAAC
1 CTAATTGCCCAAAC
87283303 CTA
1 CTA
87283306 CTTGTCATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.35, G:0.06, T:0.23
Consensus pattern (14 bp):
CTAATTGCCCAAAC
Found at i:87285077 original size:16 final size:17
Alignment explanation
Indices: 87285046--87285079 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
87285036 AGAGAAATCA
87285046 ATTTTATGGTTTAAAAT
1 ATTTTATGGTTTAAAAT
*
87285063 ATTTTTTGG-TTAAAAT
1 ATTTTATGGTTTAAAAT
87285079 A
1 A
87285080 AATATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (17 bp):
ATTTTATGGTTTAAAAT
Found at i:87287121 original size:20 final size:19
Alignment explanation
Indices: 87287083--87287126 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
87287073 TTTATGGTTT
*
87287083 TAAATATTTTTTGGTTAAAA
1 TAAATATTTTTTGGAT-AAA
87287103 TAAATATTTTCTT-GATAAA
1 TAAATATTTT-TTGGATAAA
87287122 TAAAT
1 TAAAT
87287127 TAAAATGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 12 0.55
21 2 0.09
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (19 bp):
TAAATATTTTTTGGATAAA
Found at i:87287615 original size:20 final size:19
Alignment explanation
Indices: 87287592--87287635 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
87287582 TTTATGGTTT
* *
87287592 TAAATATTTTTTTGTTAAAA
1 TAAATATTTTATTG-AAAAA
87287612 TAAATATTTTATTGAAAAA
1 TAAATATTTTATTGAAAAA
87287631 TAAAT
1 TAAAT
87287636 TAAAATGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (19 bp):
TAAATATTTTATTGAAAAA
Found at i:87287621 original size:19 final size:20
Alignment explanation
Indices: 87287592--87287635 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
87287582 TTTATGGTTT
*
87287592 TAAATATTTTT-TTGTTAAAA
1 TAAATATTTTTATTG-AAAAA
87287612 TAAATA-TTTTATTGAAAAA
1 TAAATATTTTTATTGAAAAA
87287631 TAAAT
1 TAAAT
87287636 TAAAATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
TAAATATTTTTATTGAAAAA
Found at i:87288301 original size:35 final size:35
Alignment explanation
Indices: 87288262--87288333 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
87288252 GTCTAAGATC
87288262 GCATATCCTTGAAGATCT-CCTTCCATATTTGCCAA
1 GCATATCCTTGAAGAT-TACCTTCCATATTTGCCAA
* * *
87288297 GCATATCTTTGAAGATTACTTTCCATATTTTCCAA
1 GCATATCCTTGAAGATTACCTTCCATATTTGCCAA
87288332 GC
1 GC
87288334 TCCAGAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 1 0.03
35 32 0.97
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (35 bp):
GCATATCCTTGAAGATTACCTTCCATATTTGCCAA
Found at i:87293475 original size:35 final size:35
Alignment explanation
Indices: 87293436--87293507 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
87293426 GTCTAAGATC
87293436 GCATATCCTTGAAGATCT-CCTTCCATATTTGCCAA
1 GCATATCCTTGAAGAT-TACCTTCCATATTTGCCAA
* *
87293471 GCATATCTTTGAAGATTACTTTCCATATTTGCCAA
1 GCATATCCTTGAAGATTACCTTCCATATTTGCCAA
87293506 GC
1 GC
87293508 TCCGGAGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 1 0.03
35 33 0.97
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.36
Consensus pattern (35 bp):
GCATATCCTTGAAGATTACCTTCCATATTTGCCAA
Found at i:87294714 original size:491 final size:498
Alignment explanation
Indices: 87293639--87297750 Score: 5816
Period size: 510 Copynumber: 8.1 Consensus size: 498
87293629 TGACACTAGG
* *
87293639 TCACAGTCCAAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* *
87293704 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCTGAGTGAAAGCTAGGAGTT
66 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
*
87293769 AATCGGGTTTAATACTCATTTCTTT-AAAAAAA--AGTTAGCTTAATTTCATTTAAAAA-CGGTA
131 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
*
87293830 AATAATATTTC-AGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTT
196 AATAATATTCCGA-AAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTT
* *
87293894 GGTTAAAATAAATATTTTAGTGAAAAATAAATTAAAAT-GGGTTTCATTGAGAGAAGTTACAATA
260 GGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATA
* * * *
87293958 TTAACAAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAGAATAATAGCACGAATATC
325 TTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATC
*
87294023 ATGAATACTAATACCCTCATCCTTTTAGGCTGACACAAATTCTTCCACGAGAGTATCGCCTAATA
390 ATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAA---TT-C-C----GTATC-CC--A-A
*
87294088 TTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
442 -TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
87294146 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* *
87294211 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCTGGGTGAGAGCTAGGAGTT
66 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
* *
87294276 AATCGGGTTTACTACACATTTCTTTAACAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
131 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
* *
87294341 AATAATATTCC-AGAAAATAAAAATATTTTTAGAGAAATCAATATTATGGTTCTAAAT-TTTTTT
196 AATAATATTCCGA-AAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTT
* ** * *
87294404 GGTTAAAATAAATATTTTATTGAAAAATAACTTAAAATCAGGTTTAATTGAAAAAAGTTACAATA
260 GGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATA
* * * *
87294469 TTAACTAAATAGGTATATAATATTCCGAAAAATAAAAAGACTTTTAGAAAAATATCACGAATATC
325 TTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATC
*
87294534 ATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATT-C-T-T-CC-A-TCCTCTTTCCTT
390 ATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCCGTATCCCAATTCCTCTTTCCTT
* * *
87294593 TCCAGACCACCAAATTCTGTTTATCTTTGATAAAAGCTCCTTGA
455 TCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
**
87294637 TCACAATTATAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* *
87294702 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTAACGGGTTCCGGGTGAAAGTTAGGAGTT
66 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
* **
87294767 AATCGGGTTTACTACTCATTTCTTTAAAAAAATTTAGTTAGCTTAATTTCATTTAAAACCCGGTA
131 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
*
87294832 AATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTGTGGTTTTAAATATTTTTTG
196 AATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
* * *
87294897 GTTAAAATAAATATTTTAGTGAAAAATAAATTAAAATAGGGTTTCATTGAGAGAAGTTACAATAT
261 GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
** * *
87294962 TAACTAAATACGTATATAATATT-CAAAAAATAGAAATATTTATAGAAAAATATCACGAATATCA
326 TAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCA
* *
87295026 TGAATACTAACACCCCCATCCTTTTAGGCTGACACAATTTCTTCCACGGGAGTATCGCTCAATAT
391 TGAATACTAATACCCCCATCCTTTTAGGCTGACACAA---ATT-C-C----GTATC-C-C-A-A-
* * * * *
87295091 TTTCCTCTTTCCTTTCCAAACAAGCAAATTATGCTTATCTTTGTTAGAAGCTCCTCG-
442 -TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* * *
87295148 TCACAATCCAAATTGT-CAAACCTACATGTAATCGCAAATTTTCCAAAGTATGTTGTGGTTGTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* * *
87295212 CGCCCTAAAAATAGGTCTTCTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGCAGTT
66 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
* *
87295277 AATCGGGTTTACTAGTCATTTCTTTAAAAAAAAATTCGTTAGCTTAATTTCATTTAAAAATCGGT
131 AATCGGGTTTACTACTCATTTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGT
*
87295342 AAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATAGTTTTAAATATTTTTT
195 AAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTT
* *
87295407 GGTTAAAATAAATATTTTATT---CAA-AAATTAAAATGGGGTTTAATTGAGAAAAGTTACAATA
260 GGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATA
* * *
87295468 TTAACTAAATAGGTATATAATATTCCCGAAAATAAAAATATTTTTAGAAAAGTATCACGAATATC
325 TTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATC
* *
87295533 ATGGATACTAATACCCCCATCCTTTTAGGTTGACACAAATTCTTCCACGGGAGTATCGCCTAATA
390 ATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAA---TT-C-C----GTATC-CC--A-A
*
87295598 TTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCAA
442 --TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* *
87295657 TCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTGTTTTTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* * *
87295722 CGCCCTAAAAATAGGTATACTAGTTTTGAGTAAATTTATCGGGTTCTGGGTGAGAGCTAGGAGTT
66 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
* *
87295787 AATCAGGTTTACTACAT-ATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAACCGGT
131 AATCGGGTTTACTAC-TCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGT
* * *
87295851 AAATAATCTTCCGGAAAATAAAAATATTTTTAGAGAAATCAATATTATGGTTTTAAATATTTTTT
195 AAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTT
* *
87295916 GGTTAAACTAAATATTTTATTGAAAAATAACTTAAAATGGGGTTT-ATTGAGAGAAGTTACAATA
260 GGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATA
87295980 TTAACTAAATACGTATATAATATTCCGGAAAA-AAAAATATTTTTAGAAAAATATCACGAATATC
325 TTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATC
* * * *
87296044 ATGAATACTAATACCCCCATCCTTTTAGGCGGACTCAATTTCTTCCACGGGAGTATCGCTAATAT
390 ATGAATACTAATACCCCCATCCTTTTAGGCTGACACAA---ATT-C-C----GTATC-C-CA-A-
* * * * * *
87296109 TTTCCTCTTTCCTTTCCAGACCACCAATTTCTGCTTATCTTTAATAAAAACTACTTGA
442 -TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* *
87296167 TCACAATCCTAATTGTCCAAACCTACATGTAATCGTAAATTTTCCAAAGTATGTTGTGTTTGTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* ** * * *
87296232 TGCTTTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCAGGTTCCGGGTGAAAGCTGGGAGTT
66 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
*
87296297 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCCGTA
131 AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
87296362 AATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
196 AATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
*
87296427 GTTAAAATAAATATTTTATT---CAA-AAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
261 GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
** *
87296488 TAACTAAATATTTATATGATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCA
326 TAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCA
87296553 TGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATAT
391 TGAATACTAATACCCCCATCCTTTTAGGCTGACACAAA---TT-C-C----GTAT--CCC-A-A-
*
87296618 TTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGTTCCTCGA
442 -TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* * * *
87296676 TCACAATCGTAATTGTCCAATCCTACTTGTAATCGAAAATTTTTCAAAGTATGTTGTGTTTGTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* * *
87296741 CG-CCTAAAAATAGGTTTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTT
66 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
* * * * * * *
87296805 TATCAGGCTTACAAGTCATTTCATTTTAAAAAAAATTCGTTATCTTAATTTCATTTAAAAATCGG
131 AATCGGGTTTACTACTCATTTC--TTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
* *
87296870 TGAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTAAAATATTTTT
194 TAAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
*
87296935 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAAT
259 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
* *
87297000 ATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATTTCACGAATAT
324 ATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATAT
87297065 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCCCGGGAGTATCACCCAAT
389 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAA---TT--CC----GTAT--CCC-A-
*
87297130 ATTTTCCTCTTTCCTTTCCAGACCACAAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
441 A--TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
*
87297190 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTTTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
* * *
87297255 CGCCCTAAAAATAGGTATACTAGTTTTGAGTAAATTTATCGGGTTCTGGGTGAGAGCTAGGAGTT
66 CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
*
87297320 AATCAGGTTTACTACAT-ATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAA-CGGT
131 AATCGGGTTTACTAC-TCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGT
* *
87297383 AAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATATTATGGTTTTAAATATTTTTT
195 AAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTT
* *
87297448 GGTTAAACTAAATATTTTATTGAAAAATAACTTAAAATGGGGTTT-ATGTGAGAGAAGTTACAAT
260 GGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAAT-TGAGAGAAGTTACAAT
*
87297512 ATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTGAGAAAAATATCACGAATAT
324 ATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATAT
*
87297577 CATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATT-C-T-T-CC-A-TCCTCTTTCCT
389 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCCGTATCCCAATTCCTCTTTCCT
*
87297636 TTCCAGACCACCAAATTCTGCTTATCTTTGATAAAAGCTCCTCGA
454 TTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* *
87297681 TCACAATTCTAATTGTCCAAACCTACTTATAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
1 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
87297746 CGCCC
66 CGCCC
87297751 GAAATGTAAA
Statistics
Matches: 3298, Mismatches: 243, Indels: 144
0.89 0.07 0.04
Matches are distributed among these distances:
491 480 0.15
492 88 0.03
493 1 0.00
494 3 0.00
497 5 0.00
499 1 0.00
500 2 0.00
501 1 0.00
502 1 0.00
503 1 0.00
505 2 0.00
506 18 0.01
507 257 0.08
508 308 0.09
509 254 0.08
510 757 0.23
511 391 0.12
512 322 0.10
513 53 0.02
514 277 0.08
515 75 0.02
516 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (498 bp):
TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAA
CGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGAGTT
AATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTA
AATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTG
GTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATAT
TAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCA
TGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCCGTATCCCAATTCCTCTTTCCTTT
CCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
Found at i:87296943 original size:16 final size:17
Alignment explanation
Indices: 87296912--87296945 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
87296902 AGAGAAATCA
87296912 ATTTTATGGTTTAAAAT
1 ATTTTATGGTTTAAAAT
*
87296929 ATTTTTTGG-TTAAAAT
1 ATTTTATGGTTTAAAAT
87296945 A
1 A
87296946 AATATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (17 bp):
ATTTTATGGTTTAAAAT
Found at i:87299184 original size:26 final size:26
Alignment explanation
Indices: 87299150--87299232 Score: 166
Period size: 26 Copynumber: 3.2 Consensus size: 26
87299140 ATTGATACAA
87299150 ATGATAATGGGTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATGTTCC
87299176 ATGATAATGGGTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATGTTCC
87299202 ATGATAATGGGTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATGTTCC
87299228 ATGAT
1 ATGAT
87299233 GGGAATTTCA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
ATGATAATGGGTTAGGTAAATGTTCC
Found at i:87306160 original size:25 final size:26
Alignment explanation
Indices: 87306119--87306223 Score: 189
Period size: 25 Copynumber: 4.2 Consensus size: 26
87306109 TGATACAAAT
87306119 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87306145 TGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
87306169 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87306195 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87306220 TGAT
1 TGAT
87306224 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
24 9 0.12
25 52 0.68
26 16 0.21
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87312456 original size:42 final size:42
Alignment explanation
Indices: 87312318--87312579 Score: 329
Period size: 42 Copynumber: 6.3 Consensus size: 42
87312308 TTTCACGACT
* *
87312318 TTTAGCGGCGTTTTTGAGAAAAGCGCCACTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCGTGATC
* *
87312361 TTTAGCGGCGTTTGTAGCAAAAGCGCCGCTAAA-----AG-TC
1 TTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCGTGATC
* * *
87312398 TTTAGCAGCGTCTGTGGGAAAGCGCCGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATC
* * *
87312440 TTTAGCGGCGTTTGTGGAAAAAGCGTCACGAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCGTGATC
*
87312483 TTTAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATC
* *
87312525 TTTAGCGGCGTTTGTGGGAAAGCGACGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATC
*
87312567 TTTAGCAGCGTTT
1 TTTAGCGGCGTTT
87312580 TTCCAAATAA
Statistics
Matches: 190, Mismatches: 21, Indels: 17
0.83 0.09 0.07
Matches are distributed among these distances:
36 15 0.08
37 15 0.08
38 1 0.01
41 1 0.01
42 91 0.48
43 66 0.35
44 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.27
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATC
Found at i:87312523 original size:85 final size:84
Alignment explanation
Indices: 87312396--87312579 Score: 305
Period size: 85 Copynumber: 2.2 Consensus size: 84
87312386 CCGCTAAAAG
*
87312396 TCTTTAGCAGCGTCTGTGGGAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTTGTGGAAAA
1 TCTTTAGCAGCGTTTGTGGGAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTTGTGG-AAA
*
87312461 AGCGTCACGAAAGGTCGTGA
65 AGCGACACGAAAGGTCGTGA
* *
87312481 TCTTTAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTTGTGGGAAA
1 TCTTTAGCAGCGTTTGTGGGAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTTGTGGAAAA
* *
87312546 GCGACGCTAAAGGTCGTGA
66 GCGACACGAAAGGTCGTGA
87312565 TCTTTAGCAGCGTTT
1 TCTTTAGCAGCGTTT
87312580 TTCCAAATAA
Statistics
Matches: 92, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
84 33 0.36
85 59 0.64
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.27
Consensus pattern (84 bp):
TCTTTAGCAGCGTTTGTGGGAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTTGTGGAAAA
GCGACACGAAAGGTCGTGA
Found at i:87313643 original size:55 final size:56
Alignment explanation
Indices: 87313578--87313692 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
87313568 AGCATGGCTG
* *
87313578 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
87313634 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
87313689 CCAG
1 CCAG
87313693 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:87313655 original size:27 final size:27
Alignment explanation
Indices: 87313603--87313692 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
87313593 GTGACAGAGT
87313603 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
87313632 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
87313659 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
87313687 CACCAG
1 CACCAG
87313693 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:87313844 original size:27 final size:27
Alignment explanation
Indices: 87313801--87313884 Score: 141
Period size: 27 Copynumber: 3.1 Consensus size: 27
87313791 TTAACCCTAG
* *
87313801 GGGTATAAAGGTCATTTTGCATACATA
1 GGGTATAATGGTAATTTTGCATACATA
87313828 GGGTATAATGGTAATTTTGCATACATA
1 GGGTATAATGGTAATTTTGCATACATA
*
87313855 GGGGATAATGGTAATTTTGCATACATA
1 GGGTATAATGGTAATTTTGCATACATA
87313882 GGG
1 GGG
87313885 GTATTAGTAC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.33
Consensus pattern (27 bp):
GGGTATAATGGTAATTTTGCATACATA
Found at i:87314149 original size:8 final size:8
Alignment explanation
Indices: 87314133--87314164 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
87314123 CCCAAAATAC
87314133 CGGCTTTT
1 CGGCTTTT
*
87314141 CGGCATTT
1 CGGCTTTT
87314149 CGGCTTTT
1 CGGCTTTT
87314157 CGGCTTTT
1 CGGCTTTT
87314165 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:87320496 original size:15 final size:16
Alignment explanation
Indices: 87320476--87320509 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
87320466 TACAGTTCCA
*
87320476 AAAAACTTT-TTTTTT
1 AAAAACTTTGTTTTGT
87320491 AAAAACTTTGTTTTGT
1 AAAAACTTTGTTTTGT
87320507 AAA
1 AAA
87320510 CCCAATCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (16 bp):
AAAAACTTTGTTTTGT
Done.