Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 292 of 328
Found at i:87320623 original size:35 final size:35
Alignment explanation
Indices: 87320573--87320643 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
87320563 CACCCCAAAC
*
87320573 CCGGCCTAGACGTTATGACCGGATCCGGTGTGCCA
1 CCGGCCTAGACGTTATGACCGGATCCGGTGCGCCA
*
87320608 CCGGCCTAGATGTTATGACCGGATCCGGTGCGCCA
1 CCGGCCTAGACGTTATGACCGGATCCGGTGCGCCA
87320643 C
1 C
87320644 ATTGATGCGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (35 bp):
CCGGCCTAGACGTTATGACCGGATCCGGTGCGCCA
Found at i:87321570 original size:55 final size:56
Alignment explanation
Indices: 87321505--87321619 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
87321495 AGCATGGCTG
* *
87321505 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTATGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTATGGCA-TAGCCA
* * * *
87321561 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTATGGCATAGCCA
87321616 CCAG
1 CCAG
87321620 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 22 0.43
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTATGGCATAGCCA
Found at i:87321587 original size:27 final size:27
Alignment explanation
Indices: 87321519--87321619 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
87321509 ATACAGAAAA
* *
87321519 TGTGACAGAGTCACCAGATACAGATATTT
1 TGTGGCAGAGCCACCAGA-ACAGATA-TT
* * *
87321548 TATGGCAGTGCCACCAGAACAGATATA
1 TGTGGCAGAGCCACCAGAACAGATATT
*
87321575 TGTGGCAGGGCCACCAGAACAGATAATT
1 TGTGGCAGAGCCACCAGAACAGAT-ATT
*
87321603 TGTGGCATAGCCACCAG
1 TGTGGCAGAGCCACCAG
87321620 GACGCTTCCT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
27 23 0.38
28 24 0.39
29 14 0.23
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.21
Consensus pattern (27 bp):
TGTGGCAGAGCCACCAGAACAGATATT
Found at i:87321772 original size:28 final size:28
Alignment explanation
Indices: 87321725--87321820 Score: 174
Period size: 28 Copynumber: 3.4 Consensus size: 28
87321715 AAATTAACCC
* *
87321725 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
87321753 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
87321781 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
87321809 TAGGGGTATAAT
1 TAGGGGTATAAT
87321821 AGTACATCTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:87328247 original size:80 final size:79
Alignment explanation
Indices: 87328115--87328292 Score: 259
Period size: 80 Copynumber: 2.2 Consensus size: 79
87328105 AACCCAAGTA
* *
87328115 CCTTCAAGATTTAGCCGGATATAGCAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGAGACTTAGCCGGATATAGCAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
87328180 AACTCGCACAATTG
66 AACTAGCACAAATG
* *
87328194 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGAGACTTAG-CCGGATATAGCAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
87328259 TCACTAGCACAAATG
65 TAACTAGCACAAATG
87328274 CCTTCG-GATCTTAGTCCGG
1 CCTTCGAGA-CTTAG-CCGG
87328293 TTATCATCCG
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
79 14 0.16
80 75 0.84
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CCTTCGAGACTTAGCCGGATATAGCAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATG
Found at i:87328287 original size:40 final size:40
Alignment explanation
Indices: 87328125--87328280 Score: 251
Period size: 40 Copynumber: 3.9 Consensus size: 40
87328115 CCTTCAAGAT
* *
87328125 TTAG-CCGGATATAGCAACTCGAACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
87328164 TTAGCCCGGATATAGTAACTCGCACAATTGCCTTCGAGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
87328204 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
87328244 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
87328281 ATCTTAGTCC
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 4 0.04
40 104 0.96
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:87329605 original size:14 final size:14
Alignment explanation
Indices: 87329583--87329625 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
87329573 TTTCATTTTG
87329583 TAACATAAAATTAT
1 TAACATAAAATTAT
*
87329597 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
87329610 TAACACAAAATAAT
1 TAACATAAAATTAT
87329624 TA
1 TA
87329626 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:87329619 original size:13 final size:13
Alignment explanation
Indices: 87329583--87329621 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
87329573 TTTCATTTTG
87329583 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
87329597 TAGCATAAAATAT
1 TAACATAAAATAT
*
87329610 TAACACAAAATA
1 TAACATAAAATA
87329622 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:87332567 original size:20 final size:19
Alignment explanation
Indices: 87332542--87332585 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
87332532 TTTATGGTTT
87332542 TAAATATTTT-TTGGTTAAAA
1 TAAATATTTTCTT-G-TAAAA
87332562 TAAATATTTTCTTGTAAAA
1 TAAATATTTTCTTGTAAAA
87332581 TAAAT
1 TAAAT
87332586 TAAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (19 bp):
TAAATATTTTCTTGTAAAA
Found at i:87332571 original size:19 final size:20
Alignment explanation
Indices: 87332542--87332585 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
87332532 TTTATGGTTT
87332542 TAAATATTTTT-TGGTTAAAA
1 TAAATATTTTTCTGG-TAAAA
*
87332562 TAAATA-TTTTCTTGTAAAA
1 TAAATATTTTTCTGGTAAAA
87332581 TAAAT
1 TAAAT
87332586 TAAAATGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (20 bp):
TAAATATTTTTCTGGTAAAA
Found at i:87333404 original size:507 final size:508
Alignment explanation
Indices: 87332447--87334131 Score: 2635
Period size: 512 Copynumber: 3.3 Consensus size: 508
87332437 GTCATTTCCT
* * * * *
87332447 TTTAAAAAAAATTTGTTATCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGAAAAATAAAA
1 TTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAACCGATAAATAATATTCCGGAAAATAAAA
* * *
87332512 ATATTTTTAAAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTCTTGT
66 ATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGA
* * *
87332577 AAAATAAATTAAAATGGGGTTTCATTTAGAGAAGTTACAATATTAACTAAATAGGTATATAATAT
131 AAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACTAAATACGTATATAATAT
87332642 TCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATA-CCCCATCCT
196 TCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATACCCCCATCCT
* *
87332706 TTTAGGCTGACACAAATTCTTCCACGGGAGTATCACCCAATATTTTCTTCTTTCCTTTCCAGACC
261 TTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
*
87332771 ACCAAATTCTGCTTACCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
326 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
* * * *
87332836 TAATCACAAATTTTCCAAAGTATGTTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGA
391 TAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACG-CCTAAAAATAGGTCTACTAGTTTTGA
* * * *
87332901 GTAAGTTTATCGGGTTACGGGTGAAAGCTAGGAGTTAATCAGGTTTACTAGTGA
455 GTAAGTTTATCGGGTTCCGGGTGAAAGCTAAGAGTTAATCGGGTTTACTAGTTA
* *
87332955 TTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAACCGATAAATAATAATCTGGAAAATAAAA
1 TTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAACCGATAAATAATATTCCGGAAAATAAAA
*
87333019 ATATTTTTAGCGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTAAAATAAATATTTTATTGA
66 ATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGA
*
87333083 AAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACGAAATACGTATATAATAT
131 AAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACTAAATACGTATATAATAT
** * *
87333148 TCCGGAAAATAAAAATATTTATAGAAAAATATCACGAATACCATGAATACTAATACCCCCATCTT
196 TCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATACCCCCATCCT
* * * * * *
87333213 TTTAGTCTAACACAAATTCTTCCACGGAAGTATTGCCTAATATTTTCCTCTTTCCTTTCCAGACT
261 TTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
* * * * *
87333278 ATCAAATTCTGCTTATCTTTGATAGAAGCTCCTGGGTCACAGTCCAAATTGTCCAAACCTACTTG
326 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
*
87333343 TAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGTCCTAAAAATAGGTCTACTAGTTTTAA
391 TAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACG-CCTAAAAATAGGTCTACTAGTTTTGA
* * * *
87333408 GTAAATTTATCGGGTTCCGGGTGAAAGCTAAGACTTAATCGGGTTTTCTACTCATTTC
455 GTAAGTTTATCGGGTTCCGGGTGAAAGCTAAGAGTTAATCGGG--TT-TACT-AGTTA
* * *
87333466 TTTAAAAAAAATTAGTTAGCTTAATTTCATATAAAAACAGATAAACAATATTCCGGAAAATAAAA
1 TTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAACCGATAAATAATATTCCGGAAAATAAAA
*
87333531 ATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTAGTGA
66 ATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGA
* *
87333596 AAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATACGTATATAATAT
131 AAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACTAAATACGTATATAATAT
* *
87333661 TCCAAAAAATAAAAATATTTTTAG-AAAATATCACGAATATCATGAATACTAATACCCGCATCCT
196 TCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATACCCCCATCCT
* *
87333725 TTTAGGCTGACACAAATTCTTTCTCGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
261 TTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
*
87333790 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACGTACTTG
326 ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
*
87333855 TAATCGCAAATTTTCAAAAGTATGTTGTGTTTGTAACGCTCTAAAAATAGGTCTACTAGTTTTGA
391 TAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC-CTAAAAATAGGTCTACTAGTTTTGA
87333920 GTAAGTTTATCGGGTTCCGGGTGAAAGCTAAGAGTTAATCGGGTTTACTAGTTA
455 GTAAGTTTATCGGGTTCCGGGTGAAAGCTAAGAGTTAATCGGGTTTACTAGTTA
* * *
87333974 TTTATAAAAAAAAATATTAGTTAGCTTAATTTCATTTAAAAGTCTG-TATATAATATT-CGAGAA
1 -TT-T--AAAAAAA-ATTAGTTAGCTTAATTTCATTTAAAA-ACCGATAAATAATATTCCG-GAA
* *
87334037 AATAAAATTTTTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATT
59 AATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATT
87334102 TTATTGAAAAATAAATTAAAATGGGGTTTA
124 TTATTGAAAAATAAATTAAAATGGGGTTTA
87334132 TGTAACACCC
Statistics
Matches: 1070, Mismatches: 92, Indels: 25
0.90 0.08 0.02
Matches are distributed among these distances:
506 139 0.13
507 301 0.28
508 14 0.01
509 8 0.01
510 7 0.01
511 14 0.01
512 347 0.32
513 238 0.22
514 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.36
Consensus pattern (508 bp):
TTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAACCGATAAATAATATTCCGGAAAATAAAA
ATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGA
AAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACTAAATACGTATATAATAT
TCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATACCCCCATCCT
TTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACC
ACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTG
TAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCTAAAAATAGGTCTACTAGTTTTGAG
TAAGTTTATCGGGTTCCGGGTGAAAGCTAAGAGTTAATCGGGTTTACTAGTTA
Found at i:87342648 original size:94 final size:94
Alignment explanation
Indices: 87342487--87342675 Score: 369
Period size: 94 Copynumber: 2.0 Consensus size: 94
87342477 ACTAAATAGG
87342487 TATATAATATTCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATA
1 TATATAATATTCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATA
*
87342552 CCCCCATCCTTTTAGGCTGACACAAATTC
66 CCCCCATCCTTTTACGCTGACACAAATTC
87342581 TATATAATATTCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATA
1 TATATAATATTCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATA
87342646 CCCCCATCCTTTTACGCTGACACAAATTC
66 CCCCCATCCTTTTACGCTGACACAAATTC
87342675 T
1 T
87342676 TCCACGGGAG
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (94 bp):
TATATAATATTCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATA
CCCCCATCCTTTTACGCTGACACAAATTC
Found at i:87343669 original size:513 final size:513
Alignment explanation
Indices: 87342581--87354048 Score: 13235
Period size: 513 Copynumber: 22.2 Consensus size: 513
87342571 ACACAAATTC
* *
87342581 TATATAATATTCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* *
87342646 CCCCCATCCTTTTACGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCTTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* *
87342711 TTTCCAGAGCACCAAATTCTGCTTACCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* * * * *
87342776 AACCTACTTGTAATCACAAATTTTCCAAAGTATGTCGTCTTTGTAACGCCCAAAAAATAGGTCAA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
*
87342841 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGG--TT-TACT-AG
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
** *
87342902 TGATTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAACCGATAAATAATA-TTCTGGAAAAT
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTC-GGAAAAT
* *
87342965 AAAAATATTTTTAGCGAAATTAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
* *
87343030 TTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACGAAATACG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
*
87343089 TATATAATATTCCAGAAAATAAAAATATTTATAGAAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* * * * *
87343154 CCCCCATCTTTTTAGTCTAACACAAATTCTTCCACGGGAGTATTGCCTAATATTTTCCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* * * * *
87343219 TTTCCAGACCATCAAATTCTGCTTATCTTTGATAGAAGCTCCTGGGTCACAGTCCAAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
*
87343284 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTTTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* * * *
87343349 CTAGTTTTAAGTAAATTTATCGGGCTCCGGGTGAAAGCTAGGACTTAATCGGGTTTTCTACTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * *
87343414 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATATAAAAATAGATAAAAAATATTTCGGAAAATA
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAATA
* *
87343479 AAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATATATATTTTAG
391 AAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTAT
* * *
87343544 TGAAAAATAAATTAAAATGGGGTTTCATTTAGAGAAGTTACAATATTCACTAAATACG
456 TGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* * * *
87343602 TATATAATATTCCAAAAAATAAAAATATTTTTAGAAAATTGTCATGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* *
87343667 CCCCCATCCGTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTTCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* *
87343732 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAAAAGCTTCTCGATCACAATCCTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
*
87343797 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTCACGCCCTAAAAATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* * *
87343862 CTAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGACTTAATCAGGTTTTCTACTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * * * * *
87343927 TTATTTAAAAAAAAATTAGTTAGCTTAACTTCATTTAAAAGTCGGTAAATAATATTCCAGAAAAT
326 TTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAAT
87343992 AAAAAT-TTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
* *
87344056 TTGAAAAATAAATTAAAAT-GGGTTTAATTGAGAGAAGTTACAATAATAACTAAATAGG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* * *
87344114 TATATAATATTCCAAAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATAAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
*
87344179 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCTTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* * *
87344244 TTTCCAGAGCACCAAATTCTGCTTACCTTTGATAAAAGCTCCTCGATCACAATCCTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* * * * *
87344309 AATCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTCTTTGTAACGCCCAAAAAATAGGTCAA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
*
87344374 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGG--TT-TACT-AG
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
** * *
87344435 TGATTT-AAAAAAA-TAGTTAGCTTAATTTTATTTAAAAACCGATAAATAATA-TTCTGGAAAAT
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTC-GGAAAAT
* *
87344497 AAAAATATTTTTAGCGAAATTAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
* *
87344562 TTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACGAAATACG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
*
87344621 TATATAATATTCCAGAAAATAAAAATATTTATAGAAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* * * * * *
87344686 CCCCCATCTTTTTAGTCTAACACAAATTCTTCTACGGGAGTATTGCCTAATATTTTCCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* * * * *
87344751 TTTCCAGACCATCAAATTCTGCTTATCTTTGATAGAAGCTCCTGGGTCACAGTCCAAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
*
87344816 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTACAAATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* *
87344881 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAACTAGGAGTTAATC-GGTTTTACTAGTCA
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTT-CTACTCA
* * * *
87344945 TTTCTTTAAAAAAAATTAGCTAGCTTAATTTTATTTTAAAATCGATAAATAATATTCCGGAAAAT
325 TTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAAT
*
87345010 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATACTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
* * *
87345075 TTGAAAAATATATTAAATTGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATACG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
87345134 TATATAATATTCC-------------------A-AAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* *
87345179 CCCCCATCCTTTTAGGCTGACACAAATTCTT-CATCGGGAGTATCACCCAATATTTTCTTCTTTC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCA-CGGGAGTATCGCCCAATATTTTCCTCTTTC
* *
87345243 CTTTCCAGACCACCAAATTCTGCTAATCTTTGATAGAAGCTCCTCGATCACAATTCTAATTGTCC
130 CTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCC
* * * * * *
87345308 AAATCTACTTGTAATCGCAAATTTTTCAAAGTACGTTGTCTTTGTAACGCCCGAAAAATAGGTCA
195 AAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCT
* *
87345373 ACTAGTTTTGAGTAAGTTTATCGGGTTACGGGTGAAAGTTAGGAGTTAATCGGG--TT-TACT-A
260 ACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCA
* ** *
87345434 GTGATTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAACCGATAAATAATA-TTCTGGAAAA
325 TTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTC-GGAAAA
***
87345497 TAAAAATATTTTTAGCTTAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTT
389 TAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTT
*
87345562 ATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACTAAATACG
454 ATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* *
87345622 TATATAATATTCCGGAAAATAAAAATATTTATAGAAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* * * * *
87345687 CCCCCATCCTTTTAGTCTAACACAAATTCTTCCACGGGAGTATTGCCTAATATTTTCCTCTTTCT
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* * * * *
87345752 TTTCCAGACCATCAAATTCTGCTTATCTTTGATAGAAGCTCCTGGGTCACAGTCCAAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
*
87345817 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGCTTGTAACGCCCTAAAAATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* * *
87345882 CTAGTTTTAAGTAAATTTATCGGGTTCCGGGTGAAAGCTAGGACTTAATCGGGTTTTCTACTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * *
87345947 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATATAAAAA-CTGATAAACAATATTCCGGAAAAT
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATC-GATAAATAATATTTCGGAAAAT
87346011 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
* * * *
87346076 GTGAAAAATAAATTAAAATAGGGTTTCATTTAGAGAAGTTACAATATTAACTAAATACG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* * *
87346135 TAAATAATATTCCAAAAAATAAAAATATTTTTAGAAAATTATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* * *
87346200 CCCCCATCCGTTTAGGCTGACACAAATTCTTCCACGGGAGTATCACCCAATATTTTTCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* *
87346265 TTTCCAGACCACCAAATTCTGCTTACCTTTGATAGAAGCTCCTCGATCATAATCCTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* * * *
87346330 AACCTACTTGTAATCACAAATTTTCCAAAGTATGTTGTCTTTGTAACGCCCGAAAAATAGGTCAA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* *
87346395 CTAGTTTTGAGTAAGTTTATCGGGTTTCGGGTGAAAGCTAGGAGTTAATCGGG--TT-TACT-AG
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
** *
87346456 TGATTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAACCGATAAATAATA-TTCTGGAAAAT
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTC-GGAAAAT
* * *
87346519 AAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATA-TTTTTGCTTGAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
*
87346583 TTGAAAAATAAATTAAAATGGGGTTTAA-TGAAGAGAAGTTACAATATTAACTAAATATG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTG-AGAGAAGTTACAATATTAACTAAATACG
* *
87346642 TATATAATATTCCGGAAAATAAAAATATTTATAGAAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* *
87346707 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGAGAGTATCGCCTAATATTTTCCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* *
87346772 TTTCCAGACCACCAAATTGTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTATCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* *
87346837 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGCCCTAAAGATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* *
87346902 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTGGGAG-TACAT-GAGATTTTC-ACCT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTA-ATCG-GGTTTTCTA-CT
* * ** ** *
87346964 CATACGGCTCCTCGTGGGTCACAAATAAATT--TTAGGACCGAA--TCAGTATT--ATTTGGATT
323 CAT-----T--TC-T---TTA-AAAAAAATTAGTTA-G-CTTAATTTCA-T-TTAAAAATCGA-T
* *** * ** * * *
87347023 GAATCCCA-AT--G-AAA-AAAAATA-GATTA-ATG-AA--AAGTTTGTGCGATAAGTTTAGCGA
371 AAATAATATTTCGGAAAATAAAAATATTTTTAGA-GAAATCAATTTTATG-G-T---TTTA--AA
* ** * ** ** ** *** * * *
87347078 -ATTTTTT-CTATATTATAGATTATAGGTATTG-AGCAT-GTTTCCCAT---CTCTT-CTCGAGA
428 TATTTTTTGGT-TAAAATA-AATAT-TTTATTGAAAAATAAATTAAAATGGGGT-TTAATTGAGA
** * * ** * * *
87347135 GGCAAGTGGGCTATTTCTTTGCAAAATTGTGCCTT
489 -G-AAGT-TAC-A-ATATTAACTAAA---T-AC-G
* * * * * *** * * **
87347170 TTTCTAATGGTAT-AAGAAAAT-AAAA-CTGGATA-AATAACTAATCA-GTATTGATTTTTTGGG
1 TATATAAT-AT-TCCAGAAAATAAAAATATTTTTAGAA-AAAT-ATCACG-A---ATATCAT--G
** *** **** * * ** * * *** * * * *
87347230 AATTTTTCGCACAGAAAGT-TTTTTAATTGG-AGA-ATTCTTGATTTTTGTCTTAGAAATA-AGG
56 AA-TACTAATACCCCCA-TCCTTTT-A--GGCTGACA--C-AAATTCTT-CCACGGGAGTATCGC
* * * * * * ** ** * * * * * *
87347291 TCGATATTGAGTCCTGGGTTGATACCAGTACCAAGAGTAAGAAAAATAT--TAAGACTGTGGTTA
112 CCAATATT--TTCCT--CTT--T-CC-TTTCC-AGA-CCACCAAATTCTGCTTA-TCT-TTGAT-
** * *
87347354 AGAA--T--T--ATCA-AA---TAATTGATAAAATGGACCGACCTT-T--T--C--ATTTTTCAT
164 AGAAGCTCCTCGATCACAATCCTAATTG-TCCAA---ACCTA-CTTGTAATCGCAAATTTTCCA-
*** ** **** * * ** * **
87347402 TCTTAT-TACT-TTT-T--CATATTGAAAA-A-G--TAATAAG-AATGAGTGAA--TAAT-TTG-
223 AAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACT-AGTTTTGAGT-AAGTTTATCGGGT
** ** * * * * * * * * ** ****
87347453 TCCACGCCATAGATTGAATTTGAA--GGGATGATTTGTGAATCATCTT-ATTACTGATCGTTCTA
286 TCCGGGTGAAAGCTAGGAGTT-AATCGGG-T--TTTCT-ACTCAT-TTCTTTA-AAAAAAAT-TA
* * * * ** * * * * * * *
87347515 TTTCGTTTGATATTTC--GTAAGGAT-AAGT-AATACACGGATATAGCAAAATAAAATATATATA
343 GTTAGCTT-A-ATTTCATTTAAAAATCGA-TAAATA-A--TATTTCGGAAAATAAAA-ATATTTT
* * * * **** **
87347576 TATATAATAT-ATATTTAATCGGTTTTACTACTCATTTCTTTAAAAAAAAATTAGTTAGCTTAAT
401 TAGAGAA-ATCA-ATTTTAT-GGTTTTA--AAT-ATTT-TTT-GGTTAAAA-TAAATA--TT--T
* * *** *** ** * *** * * * * **
87347640 TCCATTTAAAAATCGGTAAA-TAATATTTCGAAAAATAAAAATGTTTTTAGAGAAATCAATTTTA
453 T--ATTGAAAAA----TAAATTAAAATGGGGTTTAATTGAGA-GAAGTTACA-ATATTAACTAAA
*
87347704 T-GG
510 TACG
* *** * * * ***
87347707 T-TTTAAATATTTTTTGGTTAAAATAAATAT-TTTATTCAAAAACTAAAATGGGGTTTAATTGAG
1 TATAT-AATA--TTCCAG--AAAATAAAAATATTT-TT-AGAAA--AATATCACG---AA-T---
** ***** ** * *** * * ** **
87347770 AGAAGTTGCAATATTAACTAAATATGTATATGATATTCAGGAAAATAAAAATAT-TTTTA-GAAA
50 ATCA--TG--A-A-T-ACT-AATACCCCCATCCT-TTTAGGCTGACACAAAT-TCTTCCACG-GG
* * ** * ** * * * * *
87347833 AATATCACGAATATCATGAATACTAATACCCCCATCCTTT-TAGGCTAACACAATT-T-C--GTC
104 AGTATCGCCCA-AT-AT---T--T--T-CCTCTTTCCTTTCCAGACCACCA-AATTCTGCTTATC
*** ** * * * * *** ** * * ** **
87347893 CACGGGAGTATCACC-CAAT-ATTTTCCTCTTTCCTTTCCAGACC-AC--CAAATTCTGCTTATC
158 TTTGATAGAAGCTCCTCGATCACAATCCT-AAT--TGTCCAAACCTACTTGTAA-TC-GCAAAT-
** * ***** * * * ** * * * * *
87347953 TTTGATAGAAGCTCCTCGATCACAATCGTAATTGTCC-AAACCTACTTGTAATCGCAAATTTTCC
217 TTT-CCA-AAG-T-AT-G-TTGTGTTTGTAA-CGCCCTAAAAATA--GGT-CT-ACTAGTTTT--
* * * ** ** ** * ** ** *
87348017 AAAGTATGTTGT-GCTTGTAACGCACTAAAAATAGGTCTACTAGTTTTAAGTAAGTTTATCCAGT
269 -GAGTAAGTT-TATCGGGTTCCG-GGT--GAA-A-G-CTAGGAG--TTAA-TCGGGTT-T----T
* * * *
87348081 CCCGGGTGAAAGCTAGGAGTTTATCGGGCTTACCAGTCATTTCCTTTTAAAAAAAACTTCGTTAT
318 --C---T---A-CT--CA--TT-TC---TTTA--A---A---------AAA---AA-TTAGTTAG
* * *
87348146 CTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATCAA
348 CTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAATAAAAATATTTTTAGAGAAATCAA
*
87348211 TTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGGAAAATAAATTAAAATGGGG
413 TTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGG
*
87348276 TTTCATTGAGAGAAGTTACAATATTAACTAAATA-G
478 TTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* * * *
87348311 GATATAATATTTCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATACCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
*
87348376 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCTTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
87348441 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* * * *
87348506 AACCTACTTGTAACCACAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCGAAAAATAGGTCAA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
*
87348571 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGG--TT-TACT-AG
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
**
87348632 TGATTT-AAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATA-TTCTGGAAAAT
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTC-GGAAAAT
87348694 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
*
87348759 TTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACTAAATACG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
** *
87348818 TATATAATATTCTGGAAAATAAAAATATTTATAGAAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* *
87348883 CCCTCATCCTTTTAGGCTAACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* * * *
87348948 TTTCCAGACAATCAAATTCTGCTTATCTTTGATAGAAGCTCCT-GAGTCACAGTCCAAATTGTCC
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA-TCACAATCCTAATTGTCC
* * *
87349012 AAAACTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACTCCCTAAAAATGGGTCT
195 AAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCT
* * * *
87349077 ACTAGTTTTGAGTAAATTTATTGGGTTCCGGGTAAAAGCTAGGACTTAATCGGGTTTTCTACTCA
260 ACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCA
* * * *
87349142 TTTCTTTTCAAAAAAAATTAGTTAGCTTAACTTCATTTAAAAACCGATAAACAATATTCCGGAAA
325 TTTC-TTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAA
*
87349207 ATAAAAATATTTTTAGAGAAATCAATATTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTT
388 ATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTT
* *
87349272 TAGTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATACG
453 TATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* * *
87349333 TATATAATATTCCGGAAAATAAAAATATTTATAGAAAAATATCACGAATATCTTGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* *
87349398 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATTGCCCAATATTTTCCTCTTTCA
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
87349463 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
*
87349528 AACCTTCTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* * * * *
87349593 CTAGATTTGAGTAAATTTATCGGGTTCTGGGTGAGAGCTAGGAGTTAATCGGGTTTACTACTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * *
87349658 TTCTTTAAAAAAAATTAGTTAGCTT-ATTTCATTTAAAAACCGGTAAATAATATTCCGGAAAATA
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAATA
* *
87349722 AAAATATTTTTAGAGAAATCAATATTATGGTTTTAAATA-TTTTTGGTTAAACTAAATATTTTAT
391 AAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTAT
* *
87349786 TGAAAAATAACTTAAAATGGGGTTTAAGTGAGAGAAGTTACAATATTAACTAAATACG
456 TGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
*
87349844 TATATAATATTCC-GAAAGATAAAAATATTTTTAGATAAATATCACGAATATCATGAATACTAAT
1 TATATAATATTCCAGAAA-ATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAAT
* *
87349908 ACCCCAATCCTTTTAGGCTGACACAAATTCTTCCTCGGGAGTATCGCCCAATATTTTCCTCTTTC
65 ACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTC
*
87349973 CTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCGTAATTGTCC
130 CTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCC
*
87350038 AAACCTACTTGTAATCGCAAATTTT-CAAAGTATGTTGTGTTTGTAATGCCCTAAAAATAGGTCT
195 AAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCT
* *
87350102 ACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGGTAAGAGTTAATCGGG--TT-TACT--
260 ACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCA
* * * *
87350162 TGTTATTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAGTCGTTAAATAATA-TTCAAGAAA
325 T-TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTC-GGAAA
87350226 ATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTT
388 ATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTT
*
87350291 TATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATATG
453 TATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
87350352 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* * *
87350417 CCCCCATCCTTTTAGGCTGACAC-AATTCTTCCACAGGAGTATTGCCCAATATTTTCCTATTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* * * * *
87350481 TTTCCAGACAACCAAATTCTGTTTATCTTTGATAGAAGCTTCTCAATCACAA-CCTAATTATCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* * * *
87350545 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGCCCGAAAAATAAGTGTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* * * * * *
87350610 CTAGTTTTCAGTAAGTTTATCGTGTTCCGGGTGAAAGCTAAGAGTTAATCGCGTTTACTAGTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * * * *
87350675 TTTTTTAAAAAAAAATT-GTTAGCGTAATTTCATTTAAAAATATG-TAAATAATATTCCGAAAAA
326 TTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAAT-CGATAAATAATATTTCGGAAAA
87350738 TAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTT
389 TAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTT
*
87350803 ATTG-AAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATAGG
454 ATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* *
87350862 TATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCATGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* *
87350927 --CCC--CCTTTTAGGCTGACACAAATTCTTGCACGGGAGTATCACCCAA-ATTTTCCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
*
87350987 TTTCCAGACCACCAAATT-TGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCCAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* * *
87351051 AACCGACTTGTAATCGTAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCAAAAAATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* *
87351116 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * * ** * * * *
87351181 TTCTTCAAAAAAAAATAGTTAGCTTAATTTCAATTAAACTTCGGTTAATAATA-TTCTAGAAGAT
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTC-GGAAAAT
87351245 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
* * *
87351310 TTGAAAAATAAATTAAAATGGGGTTTTATTGAGAGAAGTTACAATATTAACTGAATAGG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* *
87351369 TATATAATATTTCGGAAAATAAAAATATTTTTTA-AAAAATATCACGAATATCATGAATACTAAT
1 TATATAATATTCCAGAAAATAAAAATA-TTTTTAGAAAAATATCACGAATATCATGAATACTAAT
* *
87351433 ACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACAGGAGTACCGCCCAATATTTTCCTCTTTC
65 ACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTC
* *
87351498 CTTTCCAGACCACCAAATTCTGCTTATCTTTGATAAAAGCTTCTCGATCACAATCCTAATTGTCC
130 CTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCC
* * *
87351563 AAACCTACATGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGTCCTAAAAATAGGTCT
195 AAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCT
*
87351628 ACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTACTCA
260 ACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCA
* * * *
87351693 TTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGAAAAAT
325 TTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAAT
*
87351758 AAAAATATTTTTAGAGAAATTAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
* *
87351823 TTG---AA-AAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACGAAATAGG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* *
87351878 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAAT-TTAAGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* * *
87351942 CCCCCATCCTTTTAGGCTGACACAAATTCTTTCACAGGAATATCGCCCAATATTTTCCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
**
87352007 TTTCCA-ACCACCAAATTCTGCTTATCTTTGATAGAAGCTTTTCGATCACAAT-CTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* **
87352070 AACCTACATGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATTCCCTAAAAATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* * *
87352135 CTAGTTTTGAGTAAGTTTATCGTGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * * * * **
87352200 TTCTTTAAAAAAAAAATCGTTAGCTTAATTTCATTGAAAAATCGGTAAATAATATTTAGGAATGT
326 TTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAAT
87352265 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
390 AAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTA
*
87352330 TTGAAAAATAAATTAAAATGGGGTTT-ATTGAGAGAAGTTACAATATTAACTAAATAAG
455 TTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
*
87352388 TATATAATATTCCAGAAAATAAAAGTATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* *
87352453 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGAGAGTATCGCCCAATATTTTTCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* *
87352518 TTTCCAGGCCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCTATCACAATCCTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* * * *
87352583 AACCTAATTGTAATCACAAATTTTCTAAAGTATGTTGTGTTTGTAATGCCCTAAAAATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* * * *
87352648 CTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAATCGAGTTTACTAGTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * ** * * * *
87352713 TTCTTTAAAAAAAAATAGTTAGCTTAATTTCAATTAAACTTCGGTTAATAATATTCCAG-AAATA
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAATA
87352777 AAAATATTTTTAGAGAAATCAATTTTATGGTTTT-AAT-TTTTTTGGTTAAAATAAATATTTTAT
391 AAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTAT
*
87352840 TGAAAAATAAATTAAAATGGGGTTTTATTGAGAGAAGTTACAATATTAACTAAATACG
456 TGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
**
87352898 TATATAATATTCTGGAAAATAAAAATATTTTTA-AAAAATATCACGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
*
87352962 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTTTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
** * *
87353027 TTTCCA-ATCCACCAAATTCTGCTTATCTTTGATAGAAGCTTTTCGATTACAATCCTAATTGTCG
131 TTTCCAGA-CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCC
*
87353091 AAACCTACTTGTAATCGCAAATTTTCCAATGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCT
195 AAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCT
* * *
87353156 ACTAGTTTTGAGTAAGTTTATCGGGTTCTGGGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA
260 ACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCA
* * **
87353221 TTTCTTTAAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAATG
325 TTTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAA
*
87353286 TAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTTGTTAAAATAAATATTTT
389 TAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTT
* * *
87353351 ATTGAAAAATAAATTAAAATGGGGTTTAATTGAAAGAAGGTACAATATTAACTAAATAGG
454 ATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* * *
87353411 TATATAATATTCCAGAAAATACAAATATTTTTAGAAAAATATCACGAATATCAGGAATACTAATG
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* * *
87353476 CCCCTATCCTTTTAGGCTGACGCAAATTCTTCCACGGGAGTATCACCCAATATTTTCCTCTTTCC
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
* *
87353541 GTTCCAGACCACCACATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
131 TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
* *
87353606 AACCTACTTGTAATCACAAATTTTCCAAAGTATGTTCTGTTTGTAACGCCCTAAAAATAGGTCTA
196 AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
* **
87353671 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTACTTGTCAT
261 CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
* * *
87353736 TT-TTTTAAAAAAA-TAGTTAGCTTAATTTCTTTTAAAAATCGATAAATAATATTCCGGAAAATA
326 TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAATA
87353799 AAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTAT
391 AAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTAT
* * * *
87353864 TGGAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATTTTAACTAAATAGG
456 TGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
* *** *
87353922 TAAATAATATTTTGGAAAATAAAAATATTTTTAGAAAAATATCTCGAATATCATGAATACTAATA
1 TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
* * * *
87353987 CCCTCATCCTTTTAGGCTGACACAGATTCTTCCATGGGAGTATGGCCCAATATTTTCCTCTT
66 CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
87354049 AGTTACTACA
Statistics
Matches: 9413, Mismatches: 1125, Indels: 841
0.83 0.10 0.07
Matches are distributed among these distances:
487 2 0.00
488 170 0.02
489 13 0.00
490 3 0.00
492 3 0.00
493 249 0.03
494 3 0.00
504 2 0.00
505 90 0.01
506 733 0.08
507 1506 0.16
508 892 0.09
509 441 0.05
510 413 0.04
511 906 0.10
512 581 0.06
513 1707 0.18
514 356 0.04
515 468 0.05
516 8 0.00
517 4 0.00
518 17 0.00
519 17 0.00
520 13 0.00
521 19 0.00
522 20 0.00
523 32 0.00
524 6 0.00
525 3 0.00
526 20 0.00
527 15 0.00
528 25 0.00
529 25 0.00
530 9 0.00
531 10 0.00
532 7 0.00
533 17 0.00
534 12 0.00
535 7 0.00
536 9 0.00
537 17 0.00
538 19 0.00
539 13 0.00
540 13 0.00
541 5 0.00
542 5 0.00
543 18 0.00
544 9 0.00
545 11 0.00
546 10 0.00
547 9 0.00
548 10 0.00
549 15 0.00
550 14 0.00
551 9 0.00
552 13 0.00
553 13 0.00
554 4 0.00
555 9 0.00
556 2 0.00
557 4 0.00
558 7 0.00
559 1 0.00
560 3 0.00
561 13 0.00
564 7 0.00
565 1 0.00
566 3 0.00
567 3 0.00
568 13 0.00
569 3 0.00
570 1 0.00
571 13 0.00
572 12 0.00
573 2 0.00
574 12 0.00
575 16 0.00
576 7 0.00
577 7 0.00
578 1 0.00
579 5 0.00
580 4 0.00
581 24 0.00
582 9 0.00
583 3 0.00
584 1 0.00
585 2 0.00
586 2 0.00
587 1 0.00
588 4 0.00
589 3 0.00
590 5 0.00
591 1 0.00
592 1 0.00
593 1 0.00
594 3 0.00
597 5 0.00
599 5 0.00
600 12 0.00
601 4 0.00
602 6 0.00
604 14 0.00
605 12 0.00
606 12 0.00
609 7 0.00
610 3 0.00
611 3 0.00
613 2 0.00
615 4 0.00
616 4 0.00
617 3 0.00
618 4 0.00
619 2 0.00
621 7 0.00
622 8 0.00
623 12 0.00
624 17 0.00
625 1 0.00
626 12 0.00
627 5 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (513 bp):
TATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAATACTAATA
CCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCC
TTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCA
AACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTA
CTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAATCGGGTTTTCTACTCAT
TTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAATAATATTTCGGAAAATA
AAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATTTTAT
TGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAACTAAATACG
Found at i:87345814 original size:508 final size:508
Alignment explanation
Indices: 87345148--87354048 Score: 8611
Period size: 507 Copynumber: 17.2 Consensus size: 508
87345138 TAATATTCCA
87345148 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTT-CA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* *
87345212 TCGGGAGTATCACCCAATATTTTCTTCTTTCCTTTCCAGACCACCAAATTCTGCTAATCTTTGAT
66 -CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGAT
* * * *
87345277 AGAAGCTCCTCGATCACAATTCTAATTGTCCAAATCTACTTGTAATCGCAAATTTTTCAAAGTAC
130 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTAT
*
87345342 GTTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTACGGGTG
195 GTTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTG
*
87345407 AAAGTTAGGAGTTAATCGGGTTTACTAGTGATTTAAAAAAAATAGTTAGCTTAATTTCATTTAAA
260 AAAGCTAGGAGTTAATCGGGTTTACTAGTGATTTAAAAAAAATAGTTAGCTTAATTTCATTTAAA
**
87345472 AACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCTTAATCAATTTTATGGTTTTAAAT
325 AACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAAT
87345537 ATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGT
390 ATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGT
87345602 TACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
455 TACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
* *
87345656 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGTCTAACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
** * * *
87345721 CGGGAGTATTGCCTAATATTTTCCTCTTTCTTTTCCAGACCATCAAATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
* * * *
87345786 GAAGCTCCTGGGTCACAGTCCAAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * * *
87345851 TTGTGC-TTGTAACGCCCTAAAAATAGGTCTACTAGTTTTAAGTAAATTTATCGGGTTCCGGGTG
196 TTGT-CTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTG
* * **
87345915 AAAGCTAGGACTTAATCGGGTTTTCTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCAT
260 AAAGCTAGGAGTTAATCGGG--TT-TACT-AGTGATTTAAAAAAAA-TAGTTAGCTTAATTTCAT
* * * * *
87345980 ATAAAAACTGATAAACAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTT
320 TTAAAAACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTT
* * * *
87346045 TAAATATTTTTTGGTTAAAATAAATATTTTAGTGAAAAATAAATTAAAATAGGGTTTCATTTAGA
385 TAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGA
* ** *
87346110 GAAGTTACAATATTAACTAAATACGTAAATAATATTCCAAAAAATAAAAATATTTTTAG
450 GAAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
* *
87346169 AAAATTATCACGAATATCATGAATACTAATACCCCCATCCGTTTAGGCTGACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* *
87346234 CGGGAGTATCACCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTACCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
* *
87346299 GAAGCTCCTCGATCATAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
*
87346364 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTTCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
87346429 AAGCTAGGAGTTAATCGGGTTTACTAGTGATTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAA
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGATTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAA
87346494 ACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATA
326 ACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATA
* * *
87346559 -TTTTTGCTTGAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATGAAGAGAAGTT
391 TTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTT
*
87346623 ACAATATTAACTAAATATGTATATAATATTCCGGAAAATAAAAATATTTATAG
456 ACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
87346676 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* * * *
87346741 CGAGAGTATCGCCTAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTGTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
*
87346806 GAAGCTCCTCGATCACAATCCTAATTATCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * * * *
87346871 TTGTGTTTGTAATGCCCTAAAGATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* * * * * ******* * ** ** * **
87346936 AAGCTGGGAG-TACAT-GAGATTTTC-ACCTCA--TACGGCTCCTCGTGGGTCACAAATAAATTT
261 AAGCTAGGAGTTA-ATCG-GGTTTACTA-GTGATTTAAAAAAAATAGTTAG-CTTAATTTCATTT
* ** * * * * ** ** *
87346996 TAGGACCGAATCAGTATTATT-TGGATTGAATCCCAATGAAAAAAAATAGATTAATG-AA--AAG
322 AAAAACCG-ATAAATAATATTCT-G---GAA----AAT--AAAAATAT-TTTTAGCGAAATCAAT
* * * ** * ** ** **
87347057 TTTGTGCGATAAGTTTAGCGA-ATTTTTT-CTATATTATAGATTATAGGTATTG-AGCAT-GTTT
375 TTTATG-G-T---TTTA--AATATTTTTTGGT-TAAAATA-AATAT-TTTATTGAAAAATAAATT
*** * * ** ** * * ** * * * * *
87347118 CCCAT---CTCTT-CTCGAGAGGCAAGTGGGCTATTTCTTTGCAAAATTGTGCCTTTTTCTAATG
430 AAAATGGGGT-TTAATTAAGA-G-AAGT-TAC-A-ATATTAACTAAA---T-AC-GTATATAAT-
* ** * **
87347179 GTAT-AAGAAAAT-AAAA-CTGGATA-
483 AT-TCCGGAAAATAAAAATATTTATAG
* * ** ** *** **** * ** * *
87347202 AATAACTAATCA-GTATTGATTTTTTGGGAATTTTTCGCACAGAAAGT-TTTTTA-ATTG-GA-G
1 AA-AAAT-ATCACG-A---ATATCAT--GAA-TACTAATACCCCCA-TCCTTTTAGGCTGACACA
* ***** * * ** *** * * * *
87347262 AATTCTT-GATTTTTGTCTTA-GAAATAAGGTCGATATTGAGTCCTGGGTT-GATACCAGTACCA
56 AATTCTTCCACGGGAGTATCACCCAATATTTTC-CTCTT---TCCT---TTCCAGACC---ACCA
* ** *** * * * * * * * **
87347324 AGAGTAAGAAAAAT-ATT-A-AG-A-CT-GTGGTTAAGAATTATCAAATAATTGATAAAATGGAC
111 A-ATTCTG-CTTATCTTTGATAGAAGCTCCTCGATCA-CA--ATC--CTAATTG-TCCAA---AC
* * *** * * * * ****
87347383 CGACCTT-T--T--C--ATTTTTCATTCT-TATT-ACTTTTTCA-TATTG-AAAA-A-GT-AA-T
165 CTA-CTTGTAATCGCAAATTTTCCAAAGTATGTTGTCTTTGTAACGCCCGAAAAATAGGTCAACT
** * ** ** ** * * * * * **
87347433 AAG-AATGAGTGAA--TAAT-TTG-TCCACGCCATAGATTGAATTTGAA--GGGATGATTTGTGA
229 -AGTTTTGAGT-AAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTT-AATCGGG-T--TTACT-A
* * ** *** * * ** * *** * * *
87347491 ATCATCTTATTACTGATCGTTCTA-TTTCGTTTGATATTTCGTAA-GGATAAGTAATACACGGAT
287 GTGAT-TTAAAAAAAATAG-T-TAGCTTAATTT--CATTTAAAAACCGATAAATAAT--A---TT
* * * * *** * *
87347554 ATAGCAAAATAAAATATATATATATATAATAT-ATATTTAATCGGTTTTACTACTCATTTCTTTA
342 CT-GGAAAATAAAA-ATATTTTTAGCGAA-ATCA-ATTTTAT-GGTTTTA--AAT-ATTT-TTT-
**** ** * * *** *** * *
87347618 AAAAAAAATTAGTTAGCTTAATTCCATTTAAAAATCGGTAAA-TAATATTTCGAAAAATAAAAAT
397 GGTTAAAA-TAAATA--TT--TT--ATTGAAAAA----TAAATTAAAATGGGGTTTAATTAAGA-
*** * * * * ** * * ** *
87347682 GTTTTTAGAGAAATCAATTTTAT-GGT-TTTAAATATTTTTTGGTTAAAATAAATAT-TTTATTC
450 GAAGTTACA-ATATTAACTAAATACGTATAT-AATA--TTCCGG--AAAATAAAAATATTTA-T-
*
87347744 AA
507 AG
* *** ** ***** ** *
87347746 AAACTAAAATGGGGTTTAATTGAGAGAAGTTGCAATATTAACTAAATATGTATATGATATTCAGG
1 AAA--AATATCACG---AA-T---ATCA--TG--A-A-T-ACT-AATACCCCCATCCT-TTTAGG
*** * * ** ** * ** * **
87347811 AAAATAAAAATAT-TTTTA-GAAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTT-
48 CTGACACAAAT-TCTTCCACG-GGAGTATCACCCA-AT-AT---T--T--T-CCTCTTTCCTTTC
* * * * * *** ** * * * * *** ** *
87347873 TAGGCTAACACAATT-T-C--GTCCACGGGAGTATCACC-CAAT-ATTTTCCTCTTTCCTTTCCA
101 CAGACCACCA-AATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCT-AAT--TGTCCA
* ** ** ** * * ** * * * *
87347932 GACC-AC--CAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCGTAATTGTCC-AAA
162 AACCTACTTGTAA-TC-GCAAAT-TTT-CCA-AAG-T-AT-GTTGTC-TTTGTAA-CGCCCGAAA
** * * * * * * ** ** ** *
87347993 CCTACTTGT-AATCGCAAATTTTCCAAAGTATGTTGT-GCTTGTAACGCACTAAAAATAGGTCTA
217 AATA--GGTCAA---CTAGTTTT---GAGTAAGTT-TATCGGGTTCCG-GGT--GAA-A-G-CTA
** ** * ** * *** **
87348056 CTAGTTTTAAGT-AAGTTTATCCAGTCCCGGGTGAAAGCTAGGAGTTTATCGGGCTTACCAGTCA
267 GGAG--TTAA-TCGGGTTTA-CTAGT---GATTTAAAAAAAATAG-TTA----GCTT---A---A
* *
87348120 TTTCCTTTTAAAAAAAACTTCGTTATCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAA
314 TTT-CATTT---AAAAAC--CG---------------------A----TAAATAATATTCTGGAA
**
87348185 AATAAAAATATTTTTAGAAAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATT
348 AATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAAAATAAATATT
* * * *
87348250 TTATTGGAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAACTAAATA-GGAT
413 TTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAACTAAATACGTAT
* *
87348314 ATAATATTTCGGAAAATAAAAATATTTTTAG
478 ATAATATTCCGGAAAATAAAAATATTTATAG
*
87348345 AAAAATATCACGAATACCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* *
87348410 CGGGAGTATCGCCCAATATTTTCTTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
* *
87348475 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAACCACAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
*
87348540 TTGTGTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
87348605 AAGCTAGGAGTTAATCGGGTTTACTAGTGATTT-AAAAAAATAGTTAGCTTAATTTCATTTAAAA
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGATTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAA
* *
87348669 ATCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA
326 ACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATA
87348734 TTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTT
391 TTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTT
*
87348799 ACAATATTAACTAAATACGTATATAATATTCTGGAAAATAAAAATATTTATAG
456 ACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
* *
87348852 AAAAATATCACGAATATCATGAATACTAATACCCTCATCCTTTTAGGCTAACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* * *
87348917 CGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACAATCAAATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
* * *
87348982 GAAGCTCCT-GAGTCACAGTCCAAATTGTCCAAAACTACTTGTAATCGCAAATTTTCCAAAGTAT
131 GAAGCTCCTCGA-TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTAT
* * * * * * * *
87349046 GTTGTGTTTGTAACTCCCTAAAAATGGGTCTACTAGTTTTGAGTAAATTTATTGGGTTCCGGGTA
195 GTTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTG
* * ** *
87349111 AAAGCTAGGACTTAATCGGGTTTTCTACTCATTTCTTTTCAAAAAAAATTAGTTAGCTTAACTTC
260 AAAGCTAGGAGTTAATCGGG--TT-TACT-A-GTGATTT-AAAAAAAA-TAGTTAGCTTAATTTC
* * * *
87349176 ATTTAAAAACCGATAAACAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATATTATGGT
318 ATTTAAAAACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGT
* * *
87349241 TTTAAATATTTTTTGGTTAAAATAAATATTTTAGTGAAAAATAAATTAAAATGGGGTTTCATTGA
383 TTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAA
87349306 GAGAAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
448 GAGAAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
*
87349367 AAAAATATCACGAATATCTTGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
** *
87349432 CGGGAGTATTGCCCAATATTTTCCTCTTTCATTTCCAGACCACCAAATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
*
87349497 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTTCTTGTAATCGCAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * * * * *
87349562 TTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGATTTGAGTAAATTTATCGGGTTCTGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* * *
87349627 GAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTT-ATTTCATT
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGA----TTTAAAAAAAA-TAGTTAGCTTAATTTCATT
* * * *
87349691 TAAAAACCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATATTATGGTTTT
321 TAAAAACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTT
* * * *
87349756 AAATA-TTTTTGGTTAAACTAAATATTTTATTGAAAAATAACTTAAAATGGGGTTTAAGTGAGAG
386 AAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAG
*
87349820 AAGTTACAATATTAACTAAATACGTATATAATATTCC-GAAAGATAAAAATATTTTTAG
451 AAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAA-ATAAAAATATTTATAG
* * *
87349878 ATAAATATCACGAATATCATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATTCTTCCT
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
*
87349943 CGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
*
87350008 GAAGCTCCTCGATCACAATCGTAATTGTCCAAACCTACTTGTAATCGCAAATTTT-CAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * * *
87350072 TTGTGTTTGTAATGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* * * *
87350137 AAGGTAAGAGTTAATCGGGTTTACTTGTTATTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAA
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGATTTAAAAAAAA-TAGTTAGCTTAATTTCATTTAAA
** * ** *
87350202 AGTCGTTAAATAATATTCAAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAAT
325 AACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAAT
*
87350267 ATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGT
390 ATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGT
* * *
87350332 TACAATATTAACTAAATATGTATATAATATTCCAGAAAATAAAAATATTTTTAG
455 TACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
87350386 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACAC-AATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* ** * * *
87350450 CAGGAGTATTGCCCAATATTTTCCTATTTCCTTTCCAGACAACCAAATTCTGTTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
* * *
87350515 GAAGCTTCTCAATCACAA-CCTAATTATCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * * ** * *
87350579 TTGTGTTTGTAATGCCCGAAAAATAAGTGTACTAGTTTTCAGTAAGTTTATCGTGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* * * * *
87350644 AAGCTAAGAGTTAATCGCGTTTACTAGTCATTTTTTTAAAAAAAAATTGTTAGCGTAATTTCATT
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGA----TTT-AAAAAAAATAGTTAGCTTAATTTCATT
** * * *
87350709 TAAAAATATG-TAAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTT
321 TAAAAA-CCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTT
*
87350773 TAAATATTTTTTGGTTAAAATAAATATTTTATTG-AAAATAAATTAAAATGGGGTTTAATTGAGA
385 TAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGA
* *
87350837 GAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAG
450 GAAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
* *
87350896 AAAAATATCATGAATATCATGAATACTAATA--CCC--CCTTTTAGGCTGACACAAATTCTTGCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
87350957 CGGGAGTATCACCCAA-ATTTTCCTCTTTCCTTTCCAGACCACCAAATT-TGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
* * *
87351020 GAAGCTCCTCGATCACAATCCCAATTGTCCAAACCGACTTGTAATCGTAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * *
87351085 TTGTGTTTGTAACGCCCAAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* *
87351150 AAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTCAAAAAAAAATAGTTAGCTTAATTTCAAT
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGA--T-TT--AAAAAAAATAGTTAGCTTAATTTCATT
*** * * * * *
87351215 TAAACTTCGGTTAATAATATTCTAGAAGATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTT
321 TAAAAACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTT
* *
87351280 AAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTTATTGAGAG
386 AAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAG
* * * *
87351345 AAGTTACAATATTAACTGAATAGGTATATAATATTTCGGAAAATAAAAATATTTTTTA-
451 AAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATA-TTTATAG
87351403 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* * *
87351468 CAGGAGTACCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
* * *
87351533 AAAGCTTCTCGATCACAATCCTAATTGTCCAAACCTACATGTAATCGCAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * * * *
87351598 TTGTGTTTGTAATGTCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* *
87351663 AAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATT
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGA----TTT-AAAAAAAATAGTTAGCTTAATTTCATT
* * * * * *
87351728 TAAAAATCGGTAAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATTAATTTTATGGTTTT
321 TAAAAACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTT
*
87351793 AAATATTTTTTGGTTAAAATAAATATTTTATTG---AA-AAATTAAAATGGGGTTTAATTGAGAG
386 AAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAG
* * * *
87351854 AAGTTACAATATTAACGAAATAGGTATATAATATTCCAGAAAATAAAAATATTTTTAG
451 AAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
* * *
87351912 AAAAAT-TTAAGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTTCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* * *
87351976 CAGGAATATCGCCCAATATTTTCCTCTTTCCTTTCCA-ACCACCAAATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
** *
87352040 GAAGCTTTTCGATCACAAT-CTAATTGTCCAAACCTACATGTAATCGCAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* ** * * *
87352104 TTGTGTTTGTAATTCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGTGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* *
87352169 AAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAAAATCGTTAGCTTAATTTCAT
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGA----TTT--AAAAAAAATAGTTAGCTTAATTTCAT
* * * ** *
87352234 TGAAAAATCGGTAAATAATATT-TAGGAATGTAAAAATATTTTTAGAGAAATCAATTTTATGGTT
320 TTAAAAACCGATAAATAATATTCT-GGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTT
*
87352298 TTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTT-ATTGAG
384 TTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAG
* * * *
87352362 AGAAGTTACAATATTAACTAAATAAGTATATAATATTCCAGAAAATAAAAGTATTTTTAG
449 AGAAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
87352422 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* * * *
87352487 CGAGAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGGCCACCAAATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
* * * *
87352552 GAAGCTCCTCTATCACAATCCTAATTGTCCAAACCTAATTGTAATCACAAATTTTCTAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * * * *
87352617 TTGTGTTTGTAATGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* * *
87352682 AAGCTAGGAGTTAATCGAGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCAAT
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGA----TTT-AAAAAAAATAGTTAGCTTAATTTCATT
*** * * ** *
87352747 TAAACTTCGGTTAATAATATTCCAG-AAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTT
321 TAAAAACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTT
* *
87352811 -AAT-TTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTTATTGAGAG
386 AAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAG
* *
87352874 AAGTTACAATATTAACTAAATACGTATATAATATTCTGGAAAATAAAAATATTTTTA-
451 AAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
87352931 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* *
87352996 CGGGAGTATCGCCCAATATTTTCCTTTTTCCTTTCCA-ATCCACCAAATTCTGCTTATCTTTGAT
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGA-CCACCAAATTCTGCTTATCTTTGAT
** * * *
87353060 AGAAGCTTTTCGATTACAATCCTAATTGTCGAAACCTACTTGTAATCGCAAATTTTCCAATGTAT
130 AGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTAT
* * * *
87353125 GTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCTGGGTG
195 GTTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTG
*
87353190 AAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAAATTAGTTAGCTTAATTTCA
260 AAAGCTAGGAGTTAATCGGGTTTACTAGTGA----TTT-AAAAAAAA-TAGTTAGCTTAATTTCA
* * * ** *
87353255 TTTAAAAATCGGTAAATAATATTCCGGAATGTAAAAATATTTTTAGAGAAATCAATTTTATGGTT
319 TTTAAAAACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTT
*
87353320 TTAAATATTTTTTTGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAA
384 TTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATT-AA
* * * * *
87353385 -AGAAGGTACAATATTAACTAAATAGGTATATAATATTCCAGAAAATACAAATATTTTTAG
448 GAGAAGTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
* * * *
87353445 AAAAATATCACGAATATCAGGAATACTAATGCCCCTATCCTTTTAGGCTGACGCAAATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* *
87353510 CGGGAGTATCACCCAATATTTTCCTCTTTCCGTTCCAGACCACCACATTCTGCTTATCTTTGATA
66 CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
*
87353575 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATG
131 GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
* * * *
87353640 TTCTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
196 TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
* * * *
87353705 AAGCTAGGAGTTAATCGGGTTTACTTGTCATTTTTTTAAAAAAATAGTTAGCTTAATTTCTTTTA
261 AAGCTAGGAGTTAATCGGGTTTACTAGTGA---TTTAAAAAAAATAGTTAGCTTAATTTCATTTA
* * *
87353770 AAAATCGATAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAA
323 AAAACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAA
* * *
87353835 ATATTTTTTGGTTAAAATAAATATTTTATTGGAAAATAAATTAAAATGGGGTTTCATTGAGAGAA
388 ATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAA
* * * ** *
87353900 GTTACAATTTTAACTAAATAGGTAAATAATATTTTGGAAAATAAAAATATTTTTAG
453 GTTACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
* * *
87353956 AAAAATATCTCGAATATCATGAATACTAATACCCTCATCCTTTTAGGCTGACACAGATTCTTCCA
1 AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
* **
87354021 TGGGAGTATGGCCCAATATTTTCCTCTT
66 CGGGAGTATCACCCAATATTTTCCTCTT
87354049 AGTTACTACA
Statistics
Matches: 7079, Mismatches: 951, Indels: 723
0.81 0.11 0.08
Matches are distributed among these distances:
504 3 0.00
505 39 0.01
506 643 0.09
507 1209 0.17
508 599 0.08
509 442 0.06
510 408 0.06
511 892 0.13
512 234 0.03
513 1001 0.14
514 294 0.04
515 459 0.06
516 12 0.00
517 4 0.00
518 5 0.00
519 7 0.00
520 7 0.00
521 15 0.00
522 8 0.00
523 12 0.00
525 1 0.00
526 15 0.00
527 11 0.00
528 22 0.00
529 32 0.00
530 18 0.00
531 23 0.00
532 22 0.00
533 29 0.00
534 23 0.00
535 16 0.00
536 13 0.00
537 23 0.00
538 13 0.00
539 13 0.00
540 12 0.00
541 6 0.00
542 1 0.00
543 18 0.00
544 8 0.00
545 4 0.00
546 4 0.00
547 5 0.00
548 6 0.00
549 2 0.00
550 3 0.00
551 4 0.00
552 11 0.00
553 14 0.00
554 5 0.00
555 10 0.00
556 3 0.00
557 10 0.00
558 12 0.00
559 11 0.00
560 5 0.00
561 14 0.00
562 4 0.00
563 1 0.00
564 7 0.00
565 6 0.00
566 5 0.00
567 5 0.00
568 13 0.00
569 4 0.00
570 1 0.00
571 13 0.00
572 15 0.00
573 2 0.00
574 12 0.00
575 15 0.00
576 7 0.00
577 7 0.00
578 1 0.00
579 5 0.00
580 4 0.00
581 24 0.00
582 9 0.00
583 3 0.00
584 1 0.00
585 2 0.00
586 2 0.00
587 1 0.00
588 8 0.00
589 4 0.00
590 12 0.00
591 1 0.00
593 1 0.00
594 4 0.00
597 5 0.00
599 7 0.00
600 14 0.00
601 3 0.00
602 7 0.00
604 13 0.00
605 12 0.00
606 10 0.00
609 7 0.00
611 2 0.00
613 2 0.00
615 4 0.00
616 4 0.00
617 3 0.00
618 4 0.00
619 2 0.00
621 7 0.00
622 8 0.00
623 11 0.00
624 10 0.00
625 1 0.00
626 1 0.00
628 1 0.00
630 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (508 bp):
AAAAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCA
CGGGAGTATCACCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATA
GAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATG
TTGTCTTTGTAACGCCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGA
AAGCTAGGAGTTAATCGGGTTTACTAGTGATTTAAAAAAAATAGTTAGCTTAATTTCATTTAAAA
ACCGATAAATAATATTCTGGAAAATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATA
TTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTT
ACAATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAG
Found at i:87348260 original size:19 final size:19
Alignment explanation
Indices: 87348222--87348265 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
87348212 TTTATGGTTT
87348222 TAAATATTTTTTGGTTAAAA
1 TAAATATTTTTTGG-TAAAA
87348242 TAAATATTTTATTGG-AAAA
1 TAAATATTTT-TTGGTAAAA
87348261 TAAAT
1 TAAAT
87348266 TAAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 10 0.43
21 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (19 bp):
TAAATATTTTTTGGTAAAA
Found at i:87349961 original size:511 final size:512
Alignment explanation
Indices: 87347590--87354048 Score: 10344
Period size: 511 Copynumber: 12.7 Consensus size: 512
87347580 TAATATATAT
* * *
87347590 TTAATCGGTTTTACTACTCATTTCTTTAAAAAAAAATTAGTTAGCTTAATTCCATTTAAAAATCG
1 TTAATCGGGTTTACTAGTCATTTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCG
* * *
87347655 GTAAATAATATTTCGAAAAATAAAAATGTTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
65 GTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
* * *
87347720 TTGGTTAAAATAAATATTTTATT---CAA-AAACTAAAATGGGGTTTAATTGAGAGAAGTTGCAA
130 TTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAA
* * *
87347781 TATTAACTAAATATGTATATGATATTCAGGAAAATAAAAATATTTTTAGAAAAATATCACGAATA
195 TATTAACTAAATAGGTATATAATATTC-CGAAAATAAAAATATTTTTAGAAAAATATCACGAATA
* * * *
87347846 TCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAATTTCGTCCACGGGAGTATCACCCAA
259 TCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAA
87347911 TATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCAC
324 TATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCAC
* * *
87347976 AATCGTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGCTTGTAACGCA
389 AATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCC
* ** *
87348041 CTAAAAATAGGTCTACTAGTTTTAAGTAAGTTTATCCAGTCCCGGGTGAAAGCTAGGAG
454 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* * * * *
87348100 TTTATCGGGCTTACCAGTCATTTCCTTTTAAAAAAAACTTCGTTATCTTAATTTCATTTAAAAAT
1 TTAATCGGGTTTACTAGTCATTT-C-TTTAAAAAAAA-TTAGTTAGCTTAATTTCATTTAAAAAT
*
87348165 CGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATCAATTTTATGGTTTTAAATATT
63 CGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATT
* *
87348230 TTTTGGTTAAAATAAATATTTTATTGGAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTAC
128 TTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTAC
*
87348295 AATATTAACTAAATAGG-ATATAATATTTCGGAAAATAAAAATATTTTTAGAAAAATATCACGAA
193 AATATTAACTAAATAGGTATATAATA-TTCCGAAAATAAAAATATTTTTAGAAAAATATCACGAA
*
87348359 TACCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCC
257 TATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCC
*
87348424 AATATTTTCTTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATC
322 AATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATC
* *
87348489 ACAATCCTAATTGTCCAAACCTACTTGTAACCACAAATTTTCCAAAGTATGTTGTGTTTGTAACG
387 ACAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACG
* *
87348554 CCCGAAAAATAGGTCAACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
452 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* *
87348615 TTAATCGGGTTTACTAGTGA----TTT-AAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGA
1 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
*
87348674 TAAATAATATTCTGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
66 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
*
87348739 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTAAGAGAAGTTACAAT
131 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
* * *
87348804 ATTAACTAAATACGTATATAATATTCTGGAAAATAAAAATATTTATAGAAAAATATCACGAATAT
196 ATTAACTAAATAGGTATATAATATTC-CGAAAATAAAAATATTTTTAGAAAAATATCACGAATAT
* *
87348869 CATGAATACTAATACCCTCATCCTTTTAGGCTAACACAAATTCTTCCACGGGAGTATCGCCCAAT
260 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAAT
* *
87348934 ATTTTCCTCTTTCCTTTCCAGACAATCAAATTCTGCTTATCTTTGATAGAAGCTCCT-GAGTCAC
325 ATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA-TCAC
* * * *
87348998 AGTCCAAATTGTCCAAAACTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACTCC
389 AATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCC
* * * * *
87349063 CTAAAAATGGGTCTACTAGTTTTGAGTAAATTTATTGGGTTCCGGGTAAAAGCTAGGAC
454 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* * * *
87349122 TTAATCGGGTTTTCTACTCATTTCTTTTCAAAAAAAATTAGTTAGCTTAACTTCATTTAAAAACC
1 TTAATCGGGTTTACTAGTCATTTC-TTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATC
* * *
87349187 GATAAACAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATATTATGGTTTTAAATATTT
64 GGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTT
* *
87349252 TTTGGTTAAAATAAATATTTTAGTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACA
129 TTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACA
* *
87349317 ATATTAACTAAATACGTATATAATATTCCGGAAAATAAAAATATTTATAGAAAAATATCACGAAT
194 ATATTAACTAAATAGGTATATAATATTCC-GAAAATAAAAATATTTTTAGAAAAATATCACGAAT
* *
87349382 ATCTTGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATTGCCCA
258 ATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCA
*
87349447 ATATTTTCCTCTTTCATTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
323 ATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
87349512 CAATCCTAATTGTCCAAACCTTCTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
388 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * * *
87349577 CCTAAAAATAGGTCTACTAGATTTGAGTAAATTTATCGGGTTCTGGGTGAGAGCTAGGAG
453 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* *
87349637 TTAATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTT-ATTTCATTTAAAAACCGG
1 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
*
87349701 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATATTATGGTTTTAAATA-TTTT
66 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
* * *
87349765 TGGTTAAACTAAATATTTTATTGAAAAATAACTTAAAATGGGGTTTAAGTGAGAGAAGTTACAAT
131 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
* *
87349830 ATTAACTAAATACGTATATAATATTCCGAAAGATAAAAATATTTTTAGATAAATATCACGAATAT
196 ATTAACTAAATAGGTATATAATATTCCGAAA-ATAAAAATATTTTTAGAAAAATATCACGAATAT
* *
87349895 CATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATTCTTCCTCGGGAGTATCGCCCAAT
260 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAAT
87349960 ATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACA
325 ATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACA
* *
87350025 ATCGTAATTGTCCAAACCTACTTGTAATCGCAAATTTT-CAAAGTATGTTGTGTTTGTAATGCCC
390 ATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCC
* *
87350089 TAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGGTAAGAG
455 TAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* * * *
87350147 TTAATCGGGTTTACT--T--GTTATTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAGTCGT
1 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
**
87350208 TAAATAATATTCAAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
66 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
87350273 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
131 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
*
87350338 ATTAACTAAATATGTATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATAT
196 ATTAACTAAATAGGTATATAATATTCC-GAAAATAAAAATATTTTTAGAAAAATATCACGAATAT
* *
87350403 CATGAATACTAATACCCCCATCCTTTTAGGCTGACAC-AATTCTTCCACAGGAGTATTGCCCAAT
260 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAAT
* * * * *
87350467 ATTTTCCTATTTCCTTTCCAGACAACCAAATTCTGTTTATCTTTGATAGAAGCTTCTCAATCACA
325 ATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACA
* *
87350532 A-CCTAATTATCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGCCC
390 ATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCC
* * * * * *
87350596 GAAAAATAAGTGTACTAGTTTTCAGTAAGTTTATCGTGTTCCGGGTGAAAGCTAAGAG
455 TAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* * * **
87350654 TTAATCGCGTTTACTAGTCATTTTTTTAAAAAAAAATT-GTTAGCGTAATTTCATTTAAAAATAT
1 TTAATCGGGTTTACTAGTCATTTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCG
*
87350718 GTAAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
65 GTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
87350783 TTGGTTAAAATAAATATTTTATTG-AAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAA
130 TTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAA
*
87350847 TATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCATGAATA
195 TATTAACTAAATAGGTATATAATATTCC-GAAAATAAAAATATTTTTAGAAAAATATCACGAATA
* *
87350912 TCATGAATACTAATA--CCC--CCTTTTAGGCTGACACAAATTCTTGCACGGGAGTATCACCCAA
259 TCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAA
87350973 -ATTTTCCTCTTTCCTTTCCAGACCACCAAATT-TGCTTATCTTTGATAGAAGCTCCTCGATCAC
324 TATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCAC
* * *
87351036 AATCCCAATTGTCCAAACCGACTTGTAATCGTAAATTTTCCAAAGTATGTTGTGTTTGTAACGCC
389 AATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCC
*
87351101 CAAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
454 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* * * **
87351160 TTAATCGGGTTTACTAGTCATTTCTTCAAAAAAAAATAGTTAGCTTAATTTCAATTAAACTTCGG
1 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
* ** *
87351225 TTAATAATATTCTAGAAGATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
66 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
*
87351290 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTTATTGAGAGAAGTTACAAT
131 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
* *
87351355 ATTAACTGAATAGGTATATAATATTTCGGAAAATAAAAATATTTTTTA-AAAAATATCACGAATA
196 ATTAACTAAATAGGTATATAATA-TTCCGAAAATAAAAATA-TTTTTAGAAAAATATCACGAATA
* *
87351419 TCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACAGGAGTACCGCCCAA
259 TCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAA
* *
87351484 TATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAAAAGCTTCTCGATCAC
324 TATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCAC
* * *
87351549 AATCCTAATTGTCCAAACCTACATGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGTC
389 AATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCC
87351614 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
454 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* *
87351673 TTAATCGGGTTTACTACTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCATTTAAAAATCGG
1 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
* *
87351738 TAAATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATTAATTTTATGGTTTTAAATATTTTT
66 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
87351803 TGGTTAAAATAAATATTTTATTG---AA-AAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
131 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
* * *
87351864 ATTAACGAAATAGGTATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAAT-TTAAGAATAT
196 ATTAACTAAATAGGTATATAATATTCC-GAAAATAAAAATATTTTTAGAAAAATATCACGAATAT
* * *
87351928 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTTCACAGGAATATCGCCCAAT
260 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAAT
**
87351993 ATTTTCCTCTTTCCTTTCCA-ACCACCAAATTCTGCTTATCTTTGATAGAAGCTTTTCGATCACA
325 ATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACA
* **
87352057 AT-CTAATTGTCCAAACCTACATGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAATTCCC
390 ATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCC
*
87352121 TAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGTGTTCCGGGTGAAAGCTAGGAG
455 TAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* * *
87352179 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAAAATCGTTAGCTTAATTTCATTGAAAAATCG
1 TTAATCGGGTTTACTAGTCATTTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCG
** **
87352244 GTAAATAATATTTAGGAATGTAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
65 GTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
87352309 TTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTT-ATTGAGAGAAGTTACAA
130 TTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAA
* *
87352373 TATTAACTAAATAAGTATATAATATTCCAGAAAATAAAAGTATTTTTAGAAAAATATCACGAATA
195 TATTAACTAAATAGGTATATAATATTCC-GAAAATAAAAATATTTTTAGAAAAATATCACGAATA
*
87352438 TCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGAGAGTATCGCCCAA
259 TCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAA
* * *
87352503 TATTTTTCTCTTTCCTTTCCAGGCCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCTATCAC
324 TATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCAC
* * * *
87352568 AATCCTAATTGTCCAAACCTAATTGTAATCACAAATTTTCTAAAGTATGTTGTGTTTGTAATGCC
389 AATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCC
*
87352633 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAG
454 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* * * **
87352692 TTAATCGAGTTTACTAGTCATTTCTTTAAAAAAAAATAGTTAGCTTAATTTCAATTAAACTTCGG
1 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
* *
87352757 TTAATAATATTCCAG-AAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTT-AAT-TTTTT
66 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
*
87352819 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTTATTGAGAGAAGTTACAAT
131 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
* *
87352884 ATTAACTAAATACGTATATAATATTCTGGAAAATAAAAATATTTTTA-AAAAATATCACGAATAT
196 ATTAACTAAATAGGTATATAATATTC-CGAAAATAAAAATATTTTTAGAAAAATATCACGAATAT
87352948 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAAT
260 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAAT
* ** *
87353013 ATTTTCCTTTTTCCTTTCCA-ATCCACCAAATTCTGCTTATCTTTGATAGAAGCTTTTCGATTAC
325 ATTTTCCTCTTTCCTTTCCAGA-CCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCAC
* *
87353077 AATCCTAATTGTCGAAACCTACTTGTAATCGCAAATTTTCCAATGTATGTTGTGTTTGTAACGCC
389 AATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCC
*
87353142 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCTGGGTGAAAGCTAGGAG
454 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
87353201 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCG
1 TTAATCGGGTTTACTAGTCATTTCTTT-AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCG
**
87353266 GTAAATAATATTCCGGAATGTAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
65 GTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTT
* * *
87353331 TTTGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAAAGAAGGTACAA
130 TTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAA
*
87353396 TATTAACTAAATAGGTATATAATATTCCAGAAAATACAAATATTTTTAGAAAAATATCACGAATA
195 TATTAACTAAATAGGTATATAATATTCC-GAAAATAAAAATATTTTTAGAAAAATATCACGAATA
* * * * *
87353461 TCAGGAATACTAATGCCCCTATCCTTTTAGGCTGACGCAAATTCTTCCACGGGAGTATCACCCAA
259 TCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAA
* *
87353526 TATTTTCCTCTTTCCGTTCCAGACCACCACATTCTGCTTATCTTTGATAGAAGCTCCTCGATCAC
324 TATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCAC
* *
87353591 AATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGTATGTTCTGTTTGTAACGCC
389 AATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCC
87353656 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
454 CTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
* * * *
87353715 TTAATCGGGTTTACTTGTCATTT-TTTTAAAAAAA-TAGTTAGCTTAATTTCTTTTAAAAATCGA
1 TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
87353778 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
66 TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
* *
87353843 TGGTTAAAATAAATATTTTATTGGAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAAT
131 TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
* * ** *
87353908 TTTAACTAAATAGGTAAATAATATTTTGGAAAATAAAAATATTTTTAGAAAAATATCTCGAATAT
196 ATTAACTAAATAGGTATATAATA-TTCCGAAAATAAAAATATTTTTAGAAAAATATCACGAATAT
* * * *
87353973 CATGAATACTAATACCCTCATCCTTTTAGGCTGACACAGATTCTTCCATGGGAGTATGGCCCAAT
260 CATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAAT
87354038 ATTTTCCTCTT
325 ATTTTCCTCTT
87354049 AGTTACTACA
Statistics
Matches: 5522, Mismatches: 363, Indels: 127
0.92 0.06 0.02
Matches are distributed among these distances:
505 39 0.01
506 654 0.12
507 831 0.15
508 279 0.05
509 416 0.08
510 415 0.08
511 895 0.16
512 331 0.06
513 559 0.10
514 284 0.05
515 768 0.14
516 51 0.01
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (512 bp):
TTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGG
TAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTT
TGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAAT
ATTAACTAAATAGGTATATAATATTCCGAAAATAAAAATATTTTTAGAAAAATATCACGAATATC
ATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATA
TTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAA
TCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGCCCT
AAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAG
Found at i:87353344 original size:20 final size:19
Alignment explanation
Indices: 87353321--87353364 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
87353311 TTTATGGTTT
* *
87353321 TAAATATTTTTTTGTTAAAA
1 TAAATATTTTATTG-AAAAA
87353341 TAAATATTTTATTGAAAAA
1 TAAATATTTTATTGAAAAA
87353360 TAAAT
1 TAAAT
87353365 TAAAATGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (19 bp):
TAAATATTTTATTGAAAAA
Found at i:87353350 original size:19 final size:20
Alignment explanation
Indices: 87353321--87353364 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
87353311 TTTATGGTTT
*
87353321 TAAATATTTTT-TTGTTAAAA
1 TAAATATTTTTATTG-AAAAA
87353341 TAAATA-TTTTATTGAAAAA
1 TAAATATTTTTATTGAAAAA
87353360 TAAAT
1 TAAAT
87353365 TAAAATGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
TAAATATTTTTATTGAAAAA
Found at i:87353870 original size:19 final size:19
Alignment explanation
Indices: 87353832--87353875 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
87353822 TTTATGGTTT
87353832 TAAATATTTTTTGGTTAAAA
1 TAAATATTTTTTGG-TAAAA
87353852 TAAATATTTTATTGG-AAAA
1 TAAATATTTT-TTGGTAAAA
87353871 TAAAT
1 TAAAT
87353876 TAAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.39
20 10 0.43
21 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (19 bp):
TAAATATTTTTTGGTAAAA
Found at i:87353953 original size:19 final size:19
Alignment explanation
Indices: 87353922--87353959 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
87353912 ACTAAATAGG
*
87353922 TAAATAATATTTTGGAAAA
1 TAAATAATATTTTAGAAAA
87353941 TAAA-AATATTTTTAGAAAA
1 TAAATAATA-TTTTAGAAAA
87353960 ATATCTCGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (19 bp):
TAAATAATATTTTAGAAAA
Found at i:87354364 original size:18 final size:18
Alignment explanation
Indices: 87354329--87354367 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
87354319 AAAGCCTATT
87354329 AAAACACATTCGCAGATC
1 AAAACACATTCGCAGATC
*
87354347 AAAAC-CATTCAGCTGATC
1 AAAACACATTC-GCAGATC
87354365 AAA
1 AAA
87354368 GCAGCTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.46, C:0.26, G:0.10, T:0.18
Consensus pattern (18 bp):
AAAACACATTCGCAGATC
Found at i:87355693 original size:10 final size:10
Alignment explanation
Indices: 87355678--87355709 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
87355668 TAATTTATGG
87355678 TACAAATTGA
1 TACAAATTGA
87355688 TACAAATTGA
1 TACAAATTGA
87355698 TACAAATTGA
1 TACAAATTGA
87355708 TA
1 TA
87355710 ATAGGTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.31
Consensus pattern (10 bp):
TACAAATTGA
Found at i:87355741 original size:26 final size:26
Alignment explanation
Indices: 87355705--87355840 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
87355695 TGATACAAAT
* *
87355705 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
87355731 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87355757 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87355783 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87355809 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
87355835 TGATAA
1 TGATAA
87355841 GAATTTCATG
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 108 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:87357323 original size:28 final size:26
Alignment explanation
Indices: 87357281--87357355 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
87357271 AAAAGTAGCT
* * *
87357281 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
87357309 AAATTACTGTTATACACCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
87357335 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
87357356 GGTTAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.55
27 1 0.03
28 17 0.43
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:87357497 original size:27 final size:27
Alignment explanation
Indices: 87357459--87357574 Score: 178
Period size: 27 Copynumber: 4.3 Consensus size: 27
87357449 GAGGAAGCGT
*
87357459 TCTGGTGGCTCTGCCAAAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
87357486 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
87357513 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
87357540 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
87357568 TCTGGTG
1 TCTGGTG
87357575 ACTTTGTCAC
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
27 74 0.91
28 7 0.09
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:87357544 original size:54 final size:55
Alignment explanation
Indices: 87357459--87357598 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
87357449 GAGGAAGCGT
* * *
87357459 TCTGGTGGCTCTGCCAAAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
87357513 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * *
87357568 TCTGGTGACTTTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
87357599 CAGCCATGTT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 60 0.78
55 17 0.22
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:87357588 original size:27 final size:28
Alignment explanation
Indices: 87357459--87357598 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 28
87357449 GAGGAAGCGT
* *
87357459 TCTGGTGGCTCTGCCAAAAATATCTG-A
1 TCTGGTGGCTCTGCCACAATTATCTGTA
*
87357486 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAATTATCTGTA
87357513 TCTGGTGGCTCTGCCAC-ATATATCTGT-
1 TCTGGTGGCTCTGCCACAAT-TATCTGTA
*
87357540 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAATTATCTGTA
* * *
87357568 TCTGGTGACTTTGTCAC-ATTATCTGT-
1 TCTGGTGGCTCTGCCACAATTATCTGTA
87357594 TCTGG
1 TCTGG
87357599 CAGCCATGTT
Statistics
Matches: 104, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
26 6 0.06
27 82 0.79
28 16 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAATTATCTGTA
Found at i:87357684 original size:19 final size:22
Alignment explanation
Indices: 87357660--87357699 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
87357650 CTCCCCACAC
87357660 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
87357679 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
87357700 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:87358847 original size:37 final size:37
Alignment explanation
Indices: 87358797--87358868 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
87358787 AAGGGCTATC
87358797 TAAGCTTAAACAATTAATTGCAAAATTATAATTAATA
1 TAAGCTTAAACAATTAATTGCAAAATTATAATTAATA
87358834 TAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TAAGCTTAAACAATTAATTGCAAAATTATAATTAA
87358869 CAATTTGATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (37 bp):
TAAGCTTAAACAATTAATTGCAAAATTATAATTAATA
Found at i:87359043 original size:50 final size:50
Alignment explanation
Indices: 87358978--87359085 Score: 189
Period size: 50 Copynumber: 2.2 Consensus size: 50
87358968 TACCTAAATG
87358978 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCGGATTTATTCTGACTA
1 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCGGATTTATTCTGACTA
* * *
87359028 ATGTGCTCAAGTCTGCTTAGTTCAACAGCCTTTCGGATTTATTCTGACTG
1 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCGGATTTATTCTGACTA
87359078 ATGTGCTC
1 ATGTGCTC
87359086 CGTTTTGATT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (50 bp):
ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCGGATTTATTCTGACTA
Found at i:87360996 original size:12 final size:12
Alignment explanation
Indices: 87360919--87361089 Score: 55
Period size: 13 Copynumber: 13.2 Consensus size: 12
87360909 AATATATAGC
87360919 ATATAATAAAAT
1 ATATAATAAAAT
*
87360931 TTATAA-ACAAAGT
1 ATATAATA-AAA-T
**
87360944 ATATAATACCAT
1 ATATAATAAAAT
*
87360956 ATGATAAGTAATAT
1 AT-ATAA-TAAAAT
* * *
87360970 AAAAAAT-ATAT
1 ATATAATAAAAT
87360981 ATATAATAAAAT
1 ATATAATAAAAT
*
87360993 ATAT-ATAATAT
1 ATATAATAAAAT
87361004 AATATAATATATAAT
1 -ATATAATA-A-AAT
* *
87361019 A-A-AAGGAAGAT
1 ATATAA-TAAAAT
*
87361030 ATTATAAGGAATAAT
1 A-TATAA-TAA-AAT
87361045 ATATAATAAAATAT
1 ATATAAT-AAA-AT
87361059 GATATGTAATAAAAT
1 -ATA--TAATAAAAT
87361074 ATATAAATAAAAT
1 ATAT-AATAAAAT
87361087 ATA
1 ATA
87361090 ATGAAATATA
Statistics
Matches: 121, Mismatches: 17, Indels: 41
0.68 0.09 0.23
Matches are distributed among these distances:
11 19 0.16
12 27 0.22
13 32 0.26
14 26 0.21
15 10 0.08
16 3 0.02
17 4 0.03
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (12 bp):
ATATAATAAAAT
Found at i:87361003 original size:5 final size:5
Alignment explanation
Indices: 87360964--87361014 Score: 61
Period size: 5 Copynumber: 10.4 Consensus size: 5
87360954 ATATGATAAG
* *
87360964 TAATA TAA-A AAATA TATATA TAATA AAATA T-ATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TA-ATA TAATA TAATA TAATA TAATA TAATA TAATA
87361013 TA
1 TA
87361015 TAATAAAAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 7 0.18
5 27 0.69
6 5 0.13
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:87361063 original size:17 final size:16
Alignment explanation
Indices: 87360966--87361083 Score: 102
Period size: 17 Copynumber: 7.4 Consensus size: 16
87360956 ATGATAAGTA
87360966 ATATAA-AAAATATAT
1 ATATAATAAAATATAT
87360981 ATATAAT-AAA-ATAT
1 ATATAATAAAATATAT
*
87360995 ATATAATATAATATAAT
1 ATATAATAAAATAT-AT
* *
87361012 ATATAATAAAAGGA-AG
1 ATATAATAAAA-TATAT
*
87361028 ATATTATAAGGAATA-AT
1 ATATAATAA--AATATAT
87361045 ATATAATAAAATATGAT
1 ATATAATAAAATAT-AT
*
87361062 ATGTAATAAAATATAT
1 ATATAATAAAATATAT
*
87361078 AAATAA
1 ATATAA
87361084 AATATAATGA
Statistics
Matches: 83, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
14 11 0.13
15 15 0.18
16 17 0.20
17 37 0.45
18 3 0.04
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
ATATAATAAAATATAT
Found at i:87362992 original size:44 final size:44
Alignment explanation
Indices: 87362929--87363557 Score: 834
Period size: 44 Copynumber: 14.4 Consensus size: 44
87362919 GCCATACTGA
87362929 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* *
87362973 TATCTTTGATCTACTCTCTGACAATACAAAGACGCCAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* * * *
87363017 TA-CTTTGATCTGTTCTCTAATAGTACAGAGACGCCAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* * * * * **
87363060 TATCTTCGATCTGCTCTTTGATAATACAAAGATGCCAAATCGGC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* *
87363104 TATCTTCGATCTGCTCTCTGACAATACAGAGACGACAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* * *
87363148 TATCTTTGATCTACTCTCTGACAATACAAAGACACCAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* *
87363192 TATCTTTGATCTGTTCTC-AACAATACAGAGACGCCAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* * **
87363235 TATCTTTGATATGCTCTCTGACAATACAGAGATGCCAAATCGGC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* * *
87363279 TATCTTCGATCTGCTTTCTGACAATACATAGACGCCAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
87363323 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* * *
87363367 TATCTTTGATCTGTTCTCTAACAATATAGAGACGCCAAATCTAC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* * *
87363411 TATCTTCGATCTGCTCTTTGACAATACAGAGACGCCAAAT-TGGC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCT-AC
* * * * *
87363455 TATCTTCGATTTGCTCTC-AACAATACAGGGACGCCAAATCTGC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* * *
87363498 TATCTTCGATCTGCTCTCTGATAATACAGAGACGCCAAATCTGC
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
* *
87363542 TATCTTCGATATGCTC
1 TATCTTTGATCTGCTC
87363558 CTTGTAAACG
Statistics
Matches: 512, Mismatches: 68, Indels: 10
0.87 0.12 0.02
Matches are distributed among these distances:
43 114 0.22
44 398 0.78
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (44 bp):
TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTAC
Found at i:87363227 original size:175 final size:176
Alignment explanation
Indices: 87362929--87363547 Score: 983
Period size: 175 Copynumber: 3.5 Consensus size: 176
87362919 GCCATACTGA
*
87362929 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTGA
* *
87362994 CAATACAAAGACGCCAAATCTACTA-CTTTGATCTGTTCTCTAATAGTACAGAGACGCCAAATCT
66 CAATACAAAGACGCCAAATCTACTATCTTTGATCTGTTCTCTAACAATACAGAGACGCCAAATCT
* *
87363058 ACTATCTTCGATCTGCTCTTTGATAATACAAAGATGCCAAATCGGC
131 ACTATCTTCGATCTGCTCTTTGACAATACAGAGATGCCAAATCGGC
*
87363104 TATCTTCGATCTGCTCTCTGACAATACAGAGACGACAAATCTACTATCTTTGATCTACTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTGA
*
87363169 CAATACAAAGACACCAAATCTACTATCTTTGATCTGTTCTC-AACAATACAGAGACGCCAAATCT
66 CAATACAAAGACGCCAAATCTACTATCTTTGATCTGTTCTCTAACAATACAGAGACGCCAAATCT
* * *
87363233 ACTATCTTTGATATGCTCTCTGACAATACAGAGATGCCAAATCGGC
131 ACTATCTTCGATCTGCTCTTTGACAATACAGAGATGCCAAATCGGC
* * *
87363279 TATCTTCGATCTGCTTTCTGACAATACATAGACGCCAAATCTACTATCTTTGATCTGCTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTGA
* *
87363344 CAATACAGAGACGCCAAATCTACTATCTTTGATCTGTTCTCTAACAATATAGAGACGCCAAATCT
66 CAATACAAAGACGCCAAATCTACTATCTTTGATCTGTTCTCTAACAATACAGAGACGCCAAATCT
* *
87363409 ACTATCTTCGATCTGCTCTTTGACAATACAGAGACGCCAAATTGGC
131 ACTATCTTCGATCTGCTCTTTGACAATACAGAGATGCCAAATCGGC
* * * * * *
87363455 TATCTTCGATTTGCTCTC-AACAATACAGGGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGA
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTGA
* * *
87363519 TAATACAGAGACGCCAAATCTGCTATCTT
66 CAATACAAAGACGCCAAATCTACTATCTT
87363548 CGATATGCTC
Statistics
Matches: 411, Mismatches: 31, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
175 317 0.77
176 94 0.23
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (176 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTGA
CAATACAAAGACGCCAAATCTACTATCTTTGATCTGTTCTCTAACAATACAGAGACGCCAAATCT
ACTATCTTCGATCTGCTCTTTGACAATACAGAGATGCCAAATCGGC
Found at i:87363582 original size:219 final size:220
Alignment explanation
Indices: 87362929--87363557 Score: 897
Period size: 219 Copynumber: 2.9 Consensus size: 220
87362919 GCCATACTGA
* *
87362929 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTGA
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTGCTCTTTGA
* * * * *
87362994 CAATACAAAGACGCCAAATCTACTA-CTTTGATCTGTTCTCTAATAGTACAGAGACGCCAAATCT
66 CAATACAGAGACGCCAAATCTACTATCTTTGATATGCTCTCTAACAATACAGAGACGCCAAATCT
* * * *
87363058 ACTATCTTCGATCTGCTCTTTGATAATACAAAGATGCCAAATCGGCTATCTTCGATCTGCTCTCT
131 GCTATCTTCGATCTGCTCTCTGATAATACAAAGACGCCAAATCTGCTATCTTCGATCTGCTCTCT
*
87363123 GACAATACAGAGACGACAAATCTAC
196 GACAATACAGAGACGCCAAATCTAC
* * * * **
87363148 TATCTTTGATCTACTCTCTGACAATACAAAGACACCAAATCTACTATCTTTGATCTGTTC-TCAA
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTGCTCTTTGA
* * *
87363212 CAATACAGAGACGCCAAATCTACTATCTTTGATATGCTCTCTGACAATACAGAGATGCCAAATCG
66 CAATACAGAGACGCCAAATCTACTATCTTTGATATGCTCTCTAACAATACAGAGACGCCAAATCT
* * * * *
87363277 GCTATCTTCGATCTGCTTTCTGACAATACATAGACGCCAAATCTACTATCTTTGATCTGCTCTCT
131 GCTATCTTCGATCTGCTCTCTGATAATACAAAGACGCCAAATCTGCTATCTTCGATCTGCTCTCT
87363342 GACAATACAGAGACGCCAAATCTAC
196 GACAATACAGAGACGCCAAATCTAC
* * * *
87363367 TATCTTTGATCTGTTCTCTAACAATATAGAGACGCCAAATCTACTATCTTCGATCTGCTCTTTGA
1 TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTGCTCTTTGA
* * * *
87363432 CAATACAGAGACGCCAAAT-TGGCTATCTTCGATTTGCTCTC-AACAATACAGGGACGCCAAATC
66 CAATACAGAGACGCCAAATCT-ACTATCTTTGATATGCTCTCTAACAATACAGAGACGCCAAATC
* *
87363495 TGCTATCTTCGATCTGCTCTCTGATAATACAGAGACGCCAAATCTGCTATCTTCGATATGCTC
130 TGCTATCTTCGATCTGCTCTCTGATAATACAAAGACGCCAAATCTGCTATCTTCGATCTGCTC
87363558 CTTGTAAACG
Statistics
Matches: 358, Mismatches: 49, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
218 25 0.07
219 295 0.82
220 38 0.11
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (220 bp):
TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTTGATCTGCTCTTTGA
CAATACAGAGACGCCAAATCTACTATCTTTGATATGCTCTCTAACAATACAGAGACGCCAAATCT
GCTATCTTCGATCTGCTCTCTGATAATACAAAGACGCCAAATCTGCTATCTTCGATCTGCTCTCT
GACAATACAGAGACGCCAAATCTAC
Found at i:87368022 original size:17 final size:18
Alignment explanation
Indices: 87368000--87368034 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
87367990 ACAGATTCGG
*
87368000 AGACAT-TTCACAATCCT
1 AGACATCTTCAAAATCCT
87368017 AGACATCTTCAAAATCCT
1 AGACATCTTCAAAATCCT
87368035 GAGATTCCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.29, G:0.06, T:0.29
Consensus pattern (18 bp):
AGACATCTTCAAAATCCT
Found at i:87375886 original size:17 final size:17
Alignment explanation
Indices: 87375852--87375961 Score: 54
Period size: 17 Copynumber: 6.5 Consensus size: 17
87375842 ATATGATAAG
*
87375852 TAATATAAAAAAATATA
1 TAATATAATAAAATATA
*
87375869 TAATAAAATATATAATATA
1 TAATATAATA-A-AATATA
*
87375888 -ATATATAATAAAAGGA-A
1 TA-ATATAATAAAA-TATA
* *
87375905 -GATATTATAAGGAATA-A
1 TAATATAATAA--AATATA
87375922 T-ATATAATAAAATATGA
1 TAATATAATAAAATAT-A
*
87375939 T-ATGTAATAAAATATA
1 TAATATAATAAAATATA
87375955 TAA-ATAA
1 TAATATAA
87375962 AATATAATGA
Statistics
Matches: 73, Mismatches: 10, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
15 4 0.05
16 13 0.18
17 37 0.51
18 6 0.08
19 13 0.18
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (17 bp):
TAATATAATAAAATATA
Found at i:87375936 original size:12 final size:12
Alignment explanation
Indices: 87375800--87375900 Score: 78
Period size: 12 Copynumber: 7.9 Consensus size: 12
87375790 AATATATAGC
87375800 ATATAATAAAAT
1 ATATAATAAAAT
*
87375812 TTATAA-ACAAAGT
1 ATATAATA-AAA-T
*
87375825 ATATAATAATAT
1 ATATAATAAAAT
* *
87375837 ATACCATATGATAAGT
1 ATA-TA-AT-A-AAAT
*
87375853 AATATAAAAAAAT
1 -ATATAATAAAAT
87375866 ATATAATAAAAT
1 ATATAATAAAAT
*
87375878 ATATAATATAAT
1 ATATAATAAAAT
87375890 ATATAATAAAA
1 ATATAATAAAA
87375901 GGAAGATATT
Statistics
Matches: 69, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
11 1 0.01
12 44 0.64
13 12 0.17
14 4 0.06
15 2 0.03
16 3 0.04
17 3 0.04
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (12 bp):
ATATAATAAAAT
Found at i:87375953 original size:12 final size:13
Alignment explanation
Indices: 87375920--87375981 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 13
87375910 TATAAGGAAT
87375920 AATATAT-AATAA
1 AATATATAAATAA
87375932 AATATGATATGTAATAA
1 AATAT-ATA---AATAA
87375949 AATATATAAATAA
1 AATATATAAATAA
87375962 AATATAATGAAATATA
1 AATAT-AT-AAATA-A
87375978 AATA
1 AATA
87375982 CTATCATAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
12 5 0.12
13 12 0.29
14 2 0.05
15 5 0.12
16 8 0.19
17 10 0.24
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (13 bp):
AATATATAAATAA
Found at i:87378830 original size:22 final size:23
Alignment explanation
Indices: 87378776--87378831 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 23
87378766 CCTTAGGTTG
87378776 TTTGTTATTTT-CTAAATATAGC
1 TTTGTTATTTTCCTAAATATAGC
*
87378798 TTTAGGT-TTTTCCTATAA-ATA-C
1 TTT-GTTATTTTCCTA-AATATAGC
87378820 TTTGTTATTTTC
1 TTTGTTATTTTC
87378832 TATTTGTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
21 2 0.07
22 16 0.57
23 8 0.29
24 2 0.07
ACGTcount: A:0.23, C:0.11, G:0.09, T:0.57
Consensus pattern (23 bp):
TTTGTTATTTTCCTAAATATAGC
Found at i:87380659 original size:17 final size:16
Alignment explanation
Indices: 87380613--87380660 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
87380603 AAAAGATGAG
*
87380613 AGCAAGGAGTTGCGGC
1 AGCAATGAGTTGCGGC
* *
87380629 AGCAATCGATTTGCTGC
1 AGCAAT-GAGTTGCGGC
87380646 AGCAATGAGCTTGCG
1 AGCAATGAG-TTGCG
87380661 ATAGCGTGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.25, C:0.21, G:0.33, T:0.21
Consensus pattern (16 bp):
AGCAATGAGTTGCGGC
Found at i:87381229 original size:25 final size:25
Alignment explanation
Indices: 87381179--87381230 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
87381169 TAAAACTAAC
* *
87381179 ATTATAATTAAAAAGAAAGATTAAA
1 ATTAAAATTAAAAAGAAAGATAAAA
*
87381204 ATTAAAATTAAAGAA-AAATATAAAA
1 ATTAAAATTAAA-AAGAAAGATAAAA
87381229 AT
1 AT
87381231 GAGAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (25 bp):
ATTAAAATTAAAAAGAAAGATAAAA
Found at i:87381254 original size:19 final size:20
Alignment explanation
Indices: 87381218--87381255 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
87381208 AAATTAAAGA
*
87381218 AAAATATAAAAATGAGAAAT
1 AAAATATAAAAATAAGAAAT
*
87381238 AAAA-ATAAAACTAAGAAA
1 AAAATATAAAAATAAGAAA
87381256 ATATTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAATATAAAAATAAGAAAT
Found at i:87382819 original size:14 final size:13
Alignment explanation
Indices: 87382796--87382827 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
87382786 GGGATATCAA
87382796 AACAATAATTAAG
1 AACAATAATTAAG
87382809 AACACATAATTAAG
1 AACA-ATAATTAAG
87382823 AACAA
1 AACAA
87382828 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:87388230 original size:18 final size:18
Alignment explanation
Indices: 87388209--87388243 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
87388199 ATTGGGCTTG
*
87388209 ATAGATTGTGAGATGAAA
1 ATAGATTGTGAAATGAAA
87388227 ATAGATTGTGAAATGAA
1 ATAGATTGTGAAATGAA
87388244 CACATAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.29
Consensus pattern (18 bp):
ATAGATTGTGAAATGAAA
Found at i:87388357 original size:43 final size:42
Alignment explanation
Indices: 87388304--87388489 Score: 156
Period size: 43 Copynumber: 4.3 Consensus size: 42
87388294 TTGGTATATG
* *
87388304 CAATCATGCACTATGTGTGACAGTATATTTTCTTTGATTTATC
1 CAATGATGCACTATGTGTG-CAGTATATTTTCTTTAATTTATC
* * ** * *
87388347 CGATGATGCACTGTGTGTGCCAACAAATTTTCTTCAATTTATC
1 CAATGATGCACTATGTGTG-CAGTATATTTTCTTTAATTTATC
* * * **
87388390 CAATGGTGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATC
1 CAATGATGCACTATGTGTGC-AGTATATTTTCTTTAATTTATC
* * ** * * *
87388433 CAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATC
1 CAATGATGCACTATGTG-TGCAGTATATTTTCTTTAATTTATC
87388476 CAATGATGCACTAT
1 CAATGATGCACTAT
87388490 ATATGCTAGT
Statistics
Matches: 115, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
42 1 0.01
43 112 0.97
44 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (42 bp):
CAATGATGCACTATGTGTGCAGTATATTTTCTTTAATTTATC
Found at i:87388490 original size:43 final size:43
Alignment explanation
Indices: 87388378--87388647 Score: 254
Period size: 43 Copynumber: 6.3 Consensus size: 43
87388368 AACAAATTTT
* * * * * ** *
87388378 CTTCAATTTATCCAATGGTGCACTATGTGTGCTAGTCTATTTT
1 CTTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATA
* *
87388421 CTTCAGCTTATCCAATGATGCACTATATGTTCCAGTATAGATA
1 CTTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATA
* *
87388464 CTTCAGTTTATCCAATGATGCACTATATATGCTAGTATAGATA
1 CTTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATA
** ** * * * *
87388507 CTTTGGTTTATCTGATGATGCATTGTATTTGCTAGTATAGAT-
1 CTTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATA
* *
87388549 CTTTCAGTTTATCCGATGATGCACTGTATGTGCCAGTATAGATA
1 C-TTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATA
* * ** * * *
87388593 TTTCAGATTATCTGATTATGCATTGTATGTGCCAGTATAGATA
1 CTTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATA
*
87388636 CTTCAATTTATC
1 CTTCAGTTTATC
87388648 TGATTATGCA
Statistics
Matches: 190, Mismatches: 35, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
42 1 0.01
43 189 0.99
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (43 bp):
CTTCAGTTTATCCAATGATGCACTATATGTGCCAGTATAGATA
Found at i:87388518 original size:86 final size:86
Alignment explanation
Indices: 87388378--87388647 Score: 285
Period size: 86 Copynumber: 3.1 Consensus size: 86
87388368 AACAAATTTT
* * * ** * * * **
87388378 CTTCAATTTATCCAATGGTGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATCCAATGATGCA
1 CTTCAATTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTTAGATTATCTGATGATGCA
* *
87388443 CTATATGTTCCAGTATAGATA
66 TTGTATGTTCCAGTATAGATA
* * * *
87388464 CTTCAGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATCTGATGATGCA
1 CTTCAATTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTTAGATTATCTGATGATGCA
*
87388529 TTGTAT-TTGCTAGTATAGAT-
66 TTGTATGTT-CCAGTATAGATA
* * * * *
87388549 CTTTCAGTTTATCCGATGATGCACTGTATGTGCCAGTATAGATA-TTTCAGATTATCTGATTATG
1 C-TTCAATTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTT-AGATTATCTGATGATG
*
87388613 CATTGTATGTGCCAGTATAGATA
64 CATTGTATGTTCCAGTATAGATA
87388636 CTTCAATTTATC
1 CTTCAATTTATC
87388648 TGATTATGCA
Statistics
Matches: 153, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
85 6 0.04
86 145 0.95
87 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (86 bp):
CTTCAATTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTTAGATTATCTGATGATGCA
TTGTATGTTCCAGTATAGATA
Found at i:87388540 original size:129 final size:129
Alignment explanation
Indices: 87388422--87388663 Score: 331
Period size: 129 Copynumber: 1.9 Consensus size: 129
87388412 GTCTATTTTC
* *
87388422 TTCAGCTTATCCAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATCCAATGATGCAC
1 TTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCCAATGATGCAC
* ***
87388487 TATATATGCTAGTATAGATACTTTGGTTTATCTGATGATGCATTGTATTTGCTAGTATAGATCT
66 TATATATGCCAGTATAGATACTTCAATTTATCTGATGATGCATTGTATTTGCTAGTATAGATCT
* * * * ** * *
87388551 TTCAGTTTATCCGATGATGCACTGTATGTGCCAGTATAGATATTTCAGATTATCTGATTATGCAT
1 TTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCCAATGATGCAC
* * *
87388616 TGTATGTGCCAGTATAGATACTTCAATTTATCTGATTATGCATTGTAT
66 TATATATGCCAGTATAGATACTTCAATTTATCTGATGATGCATTGTAT
87388664 GTGTTAGGAT
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
129 96 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (129 bp):
TTCAGCTTATCCAATGATGCACTATATGTGCCAGTATAGATACTTCAGATTATCCAATGATGCAC
TATATATGCCAGTATAGATACTTCAATTTATCTGATGATGCATTGTATTTGCTAGTATAGATCT
Found at i:87388648 original size:43 final size:43
Alignment explanation
Indices: 87388421--87388666 Score: 269
Period size: 43 Copynumber: 5.7 Consensus size: 43
87388411 AGTCTATTTT
* ** * * *
87388421 CTTCAGCTTATCCAATGATGCACTATATGTTCCAGTATAGATA
1 CTTCAGTTTATCTGATGATGCATTGTATGTGCCAGTATAGATA
** * * * *
87388464 CTTCAGTTTATCCAATGATGCACTATATATGCTAGTATAGATA
1 CTTCAGTTTATCTGATGATGCATTGTATGTGCCAGTATAGATA
** * *
87388507 CTTTGGTTTATCTGATGATGCATTGTATTTGCTAGTATAGAT-
1 CTTCAGTTTATCTGATGATGCATTGTATGTGCCAGTATAGATA
* *
87388549 CTTTCAGTTTATCCGATGATGCACTGTATGTGCCAGTATAGATA
1 C-TTCAGTTTATCTGATGATGCATTGTATGTGCCAGTATAGATA
* * *
87388593 TTTCAGATTATCTGATTATGCATTGTATGTGCCAGTATAGATA
1 CTTCAGTTTATCTGATGATGCATTGTATGTGCCAGTATAGATA
* *
87388636 CTTCAATTTATCTGATTATGCATTGTATGTG
1 CTTCAGTTTATCTGATGATGCATTGTATGTG
87388667 TTAGGATAAT
Statistics
Matches: 176, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 175 0.99
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (43 bp):
CTTCAGTTTATCTGATGATGCATTGTATGTGCCAGTATAGATA
Found at i:87388697 original size:129 final size:128
Alignment explanation
Indices: 87388422--87388743 Score: 319
Period size: 129 Copynumber: 2.5 Consensus size: 128
87388412 GTCTATTTTC
* * **
87388422 TTCAGCTT-ATCCAATGATGCACTATATGTTCCAGTATAGATACTTCAGTTTATCCAATGATGCA
1 TTCAG-TTCATCCAATGATGCACT-TATGTACCAGTATAGATATTTCAGTTTATCTGATGATGCA
* *** * * *
87388486 CTATATATGCTAGTATAGATACTTTGGTTTATCTGATGATGCATTGTATTTGCTAGTATAGATCT
64 CTATATATGCCAGTATAGATACTTCAATTTATCTGATGATGCATTGTATGTGCTAGGATAGATCG
* * * * * *
87388551 TTCAGTTTATCCGATGATGCACTGTATGTGCCAGTATAGATATTTCAGATTATCTGATTATGCAT
1 TTCAGTTCATCCAATGATGCACT-TATGTACCAGTATAGATATTTCAGTTTATCTGATGATGCAC
* * * *
87388616 TGTATGTGCCAGTATAGATACTTCAATTTATCTGATTATGCATTGTATGTGTTAGGATA-ATTGC
65 TATATATGCCAGTATAGATACTTCAATTTATCTGATGATGCATTGTATGTGCTAGGATAGA-T-C
87388680 G
128 G
* * * * *
87388681 TTGA-TTCATCTAATGATACACTTATGTATCAGTAT-GATTGTTTCAGTTTTATCTGATGATGCA
1 TTCAGTTCATCCAATGATGCACTTATGTACCAGTATAGA-TATTTCAG-TTTATCTGATGATGCA
87388744 ATTATGATGC
Statistics
Matches: 158, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
127 2 0.01
128 21 0.13
129 131 0.83
130 4 0.03
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (128 bp):
TTCAGTTCATCCAATGATGCACTTATGTACCAGTATAGATATTTCAGTTTATCTGATGATGCACT
ATATATGCCAGTATAGATACTTCAATTTATCTGATGATGCATTGTATGTGCTAGGATAGATCG
Found at i:87392238 original size:29 final size:29
Alignment explanation
Indices: 87392199--87392278 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 29
87392189 CTTAATAATC
*
87392199 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
87392229 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
* *
87392258 AGCCCGCATACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
87392279 TCTCTCAACC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:87396066 original size:17 final size:17
Alignment explanation
Indices: 87396046--87396145 Score: 55
Period size: 17 Copynumber: 5.6 Consensus size: 17
87396036 ATAAAAATAG
87396046 TATATATTATTTTTATT
1 TATATATTATTTTTATT
* *
87396063 TATATGATATATTATCATAT
1 TATAT-AT-TATTTTTAT-T
*
87396083 TATTTA-TATTTCATTATAT
1 TATATATTATTT--TTAT-T
*
87396102 TTTAT-TTATATTTTA-T
1 TATATATTAT-TTTTATT
*
87396118 TATATATCATATTTTA-T
1 TATATATTAT-TTTTATT
87396135 TATATATTATT
1 TATATATTATT
87396146 CCCTATATTA
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
16 6 0.09
17 28 0.43
18 5 0.08
19 19 0.29
20 7 0.11
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (17 bp):
TATATATTATTTTTATT
Found at i:87396082 original size:10 final size:10
Alignment explanation
Indices: 87396046--87396145 Score: 61
Period size: 10 Copynumber: 10.1 Consensus size: 10
87396036 ATAAAAATAG
87396046 TATATATTAT
1 TATATATTAT
*
87396056 T-TTTA-T-T
1 TATATATTAT
87396063 TATATGATATAT
1 TATAT-AT-TAT
87396075 TATCATATTAT
1 TAT-ATATTAT
87396086 T-TATATTTCAT
1 TATATA-TT-AT
*
87396097 TATATTTTAT
1 TATATATTAT
87396107 T-TATATT-T
1 TATATATTAT
87396115 TAT-TATATAT
1 TATATAT-TAT
* *
87396125 CATATTTTAT
1 TATATATTAT
87396135 TATATATTAT
1 TATATATTAT
87396145 T
1 T
87396146 CCCTATATTA
Statistics
Matches: 69, Mismatches: 8, Indels: 26
0.67 0.08 0.25
Matches are distributed among these distances:
7 2 0.03
8 8 0.12
9 14 0.20
10 22 0.32
11 12 0.17
12 9 0.13
13 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (10 bp):
TATATATTAT
Found at i:87396108 original size:21 final size:20
Alignment explanation
Indices: 87396050--87396122 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 20
87396040 AAATAGTATA
87396050 TATTAT-TTTTATTTATATGAT
1 TATTATATTTTATTTATAT--T
*
87396071 ATATTATCATATTATTTATATT
1 -TATTAT-ATTTTATTTATATT
87396093 TCATTATATTTTATTTATATTT
1 T-ATTATATTTTATTTATA-TT
87396115 TATTATAT
1 TATTATAT
87396123 ATCATATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
21 19 0.42
22 15 0.33
24 11 0.24
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (20 bp):
TATTATATTTTATTTATATT
Found at i:87396177 original size:7 final size:7
Alignment explanation
Indices: 87396163--87396198 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
87396153 TTATCTTCCT
87396163 TTTATTA
1 TTTATTA
*
87396170 TATATTA
1 TTTATTA
87396177 TTTCATTA
1 TTT-ATTA
87396185 TTTATTA
1 TTTATTA
87396192 TTTATTA
1 TTTATTA
87396199 GTATATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:87396190 original size:15 final size:14
Alignment explanation
Indices: 87396163--87396204 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
87396153 TTATCTTCCT
87396163 TTTATTATATATTA
1 TTTATTATATATTA
*
87396177 TTTCATTATTTATTA
1 TTT-ATTATATATTA
87396192 TTTATTAGTATAT
1 TTTATTA-TATAT
87396205 AAAAATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (14 bp):
TTTATTATATATTA
Found at i:87408734 original size:44 final size:44
Alignment explanation
Indices: 87408671--87409203 Score: 789
Period size: 44 Copynumber: 12.1 Consensus size: 44
87408661 GGGACAATGT
*
87408671 AGATCGAAGATAGTAGATTTGGCGTCCCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* *
87408715 AGATCAAAGATAGTAGATTTGGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* *
87408759 AGATCGAAGATAGCAGATTTGGCGTCTTTGTATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * * *
87408803 AGATCAAAGATAGTAGATTTGGCATCCCTGTATTGTCAGAGAGT
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
*
87408847 AGATCGAAGATAGTAGATTTGGAGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* *
87408891 AGATCGAAGATAGCAGATTTGGCGTCCCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
*
87408935 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
87408979 AGATCGAAGATAGCAGATTTGGCGTCCCTATATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
*
87409023 AGATCGAAGATAGTAGGA-TTGACGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGTA-GATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
87409067 AGATCAAAGATAGTAGATTTGGCATCTCTGTATGGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * * * *
87409111 AGGTCGAAGATGGTAGATTTGGTGCCTCTATATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * **
87409155 AGATCGAGGGTAGCGGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
87409199 AGATC
1 AGATC
87409204 AAACATTTCG
Statistics
Matches: 438, Mismatches: 49, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
43 2 0.00
44 434 0.99
45 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (44 bp):
AGATCGAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGAGAGC
Found at i:87410802 original size:17 final size:16
Alignment explanation
Indices: 87410782--87410922 Score: 72
Period size: 17 Copynumber: 8.4 Consensus size: 16
87410772 ATAAAAATAG
87410782 TATATATTATTTTTAT
1 TATATATTATTTTTAT
*
87410798 T-TATATGATATTTTAT
1 TATATATTAT-TTTTAT
*
87410814 CATATTATTTATATATTTTAT
1 --TA-TATAT-TAT-TTTTAT
*
87410835 TATATATAATATTTTAT
1 TATATATTAT-TTTTAT
**
87410852 TATATATTATTCCCTA-
1 TATATATTATT-TTTAT
* **
87410868 TATTATCTTCCTTTTAT
1 TA-TATATTATTTTTAT
*
87410885 TATATATTA-TTTCAT
1 TATATATTATTTTTAT
* *
87410900 TATTTATTATTTATTAG
1 TATATATTATTT-TTAT
87410917 TATATA
1 TATATA
87410923 AAAATTAAAA
Statistics
Matches: 94, Mismatches: 20, Indels: 21
0.70 0.15 0.16
Matches are distributed among these distances:
15 20 0.21
16 19 0.20
17 35 0.37
18 5 0.05
19 2 0.02
20 4 0.04
21 9 0.10
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (16 bp):
TATATATTATTTTTAT
Found at i:87410837 original size:24 final size:23
Alignment explanation
Indices: 87410794--87410841 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
87410784 TATATTATTT
87410794 TTATTTATATGATATTTTATCATA
1 TTATTTATATGATATTTTAT-ATA
*
87410818 TTATTTATAT-ATTTTATTATATA
1 TTATTTATATGATATT-TTATATA
87410841 T
1 T
87410842 AATATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
TTATTTATATGATATTTTATATA
Found at i:87410894 original size:7 final size:7
Alignment explanation
Indices: 87410880--87410915 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
87410870 TTATCTTCCT
87410880 TTTATTA
1 TTTATTA
*
87410887 TATATTA
1 TTTATTA
87410894 TTTCATTA
1 TTT-ATTA
87410902 TTTATTA
1 TTTATTA
87410909 TTTATTA
1 TTTATTA
87410916 GTATATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:87410907 original size:15 final size:14
Alignment explanation
Indices: 87410880--87410921 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
87410870 TTATCTTCCT
87410880 TTTATTATATATTA
1 TTTATTATATATTA
*
87410894 TTTCATTATTTATTA
1 TTT-ATTATATATTA
87410909 TTTATTAGTATAT
1 TTTATTA-TATAT
87410922 AAAAATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (14 bp):
TTTATTATATATTA
Found at i:87412779 original size:47 final size:47
Alignment explanation
Indices: 87412681--87412808 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 47
87412671 AATCGATAAG
* * * *
87412681 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAGAA
* *
87412728 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCAGAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAGAA
* * ** *
87412775 TACCTATATCAAGGCTTGTAGCCAAATCTAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
87412809 TTATTCCACC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAGAA
Found at i:87418406 original size:28 final size:27
Alignment explanation
Indices: 87418373--87418425 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
87418363 TTAGAATACT
*
87418373 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
87418401 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
87418426 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:87418412 original size:27 final size:27
Alignment explanation
Indices: 87418382--87418480 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
87418372 TTTAGTTTAC
87418382 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
87418409 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
87418436 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
87418463 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
87418481 CCCGATTTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:87418464 original size:54 final size:54
Alignment explanation
Indices: 87418377--87418499 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 54
87418367 AATACTTTAG
* * *
87418377 TTTACTAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAA-TACCCTCGA
1 TTTA-TAAAATTACCGAAATACGCTTAGCTTGTAAAAATAC-CAAAGTACCCCCGA
* * * *
87418432 TTTGTAAAATTACTGAAATAC-CTTCGACTTGTAAAATTACCAAAGTACCCCCGA
1 TTTATAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACCAAAGTACCCCCGA
*
87418486 TTTATAGAATTACC
1 TTTATAAAATTACC
87418500 ATTTTACCCC
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 7 0.12
54 46 0.82
55 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (54 bp):
TTTATAAAATTACCGAAATACGCTTAGCTTGTAAAAATACCAAAGTACCCCCGA
Found at i:87418522 original size:26 final size:27
Alignment explanation
Indices: 87418477--87418685 Score: 224
Period size: 27 Copynumber: 7.8 Consensus size: 27
87418467 ATTACCAAAG
* * *
87418477 TACCCCCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
87418504 TACCC-CGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
87418530 TACCC-CGATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
87418556 TACCTTCGACTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
87418583 TACCCTCGATTTATAGAAGTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** * *
87418610 TACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
87418637 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
87418664 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
87418686 TAAAAACCCT
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
26 49 0.31
27 111 0.69
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:87418743 original size:27 final size:26
Alignment explanation
Indices: 87418678--87418887 Score: 140
Period size: 27 Copynumber: 7.8 Consensus size: 26
87418668 CTCGATTTAC
* *
87418678 AAAATTACTAAAA-ACCCTAG-TCTGT
1 AAAATTACCAAAATACCCTTGAT-TGT
* * *
87418703 AAAATTGCTAAAATACCCTTGGTTCGT
1 AAAATTACCAAAATACCCTTGATT-GT
* **
87418730 AAAATTACCGAAATACCCTCAACTTGT
1 AAAATTACCAAAATACCCTTGA-TTGT
* *
87418757 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATA-CCCTTGATTGT
* *
87418784 AAAATTACTAAAATACCACTGGATTGT
1 AAAATTACCAAAATACC-CTTGATTGT
* * * ** *
87418811 GAAATTATCGAAATACCCTCAATTTGCC
1 AAAATTACCAAAATACCCTTGA-TTG-T
87418839 AAAATTACCAAAATACCCTTGATT-T
1 AAAATTACCAAAATACCCTTGATTGT
87418864 ACAAAGTTA-CAGAAATACCCTTGA
1 A-AAA-TTACCA-AAATACCCTTGA
87418888 CTTTCTAAAA
Statistics
Matches: 146, Mismatches: 28, Indels: 20
0.75 0.14 0.10
Matches are distributed among these distances:
25 13 0.09
26 17 0.12
27 93 0.64
28 23 0.16
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTTGATTGT
Found at i:87418816 original size:81 final size:82
Alignment explanation
Indices: 87418677--87418856 Score: 237
Period size: 81 Copynumber: 2.2 Consensus size: 82
87418667 CCTCGATTTA
* *
87418677 CAAAATTACTAAAA-A-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTCGTAAAATTACCG
1 CAAAATTACCAAAATACCCCTAGTCTGTAAAATTACTAAAATACCCTTGGTTCGTAAAATTACCG
87418740 AAATACCCTCAACTTG-
66 AAATACCCTCAACTTGC
* *
87418756 TAAAATTACCAAAATACCCCTAG-CTTGTAAAATTACTAAAATACCAC-TGGATT-GTGAAATTA
1 CAAAATTACCAAAATACCCCTAGTC-TGTAAAATTACTAAAATACC-CTTGG-TTCGTAAAATTA
* *
87418818 TCGAAATACCCTCAATTTGC
63 CCGAAATACCCTCAACTTGC
87418838 CAAAATTACCAAAATACCC
1 CAAAATTACCAAAATACCC
87418857 TTGATTTACA
Statistics
Matches: 88, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
79 12 0.14
80 2 0.02
81 53 0.60
82 21 0.24
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (82 bp):
CAAAATTACCAAAATACCCCTAGTCTGTAAAATTACTAAAATACCCTTGGTTCGTAAAATTACCG
AAATACCCTCAACTTGC
Found at i:87418934 original size:27 final size:27
Alignment explanation
Indices: 87418849--87418946 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
87418839 AAAATTACCA
* * * *
87418849 AAATACCCTTGATTTACAAAGTTACAG
1 AAATACCATTGGTTTACAAAATTATAG
* *
87418876 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCATTG-GTTTAC--AAAATTATAG
*
87418905 AAATACCATTGGTTTACAAAATTATTG
1 AAATACCATTGGTTTACAAAATTATAG
*
87418932 AAATACCTTTGGTTT
1 AAATACCATTGGTTT
87418947 GTAGATTTAC
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
27 35 0.58
28 6 0.10
29 19 0.32
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (27 bp):
AAATACCATTGGTTTACAAAATTATAG
Found at i:87419010 original size:27 final size:27
Alignment explanation
Indices: 87418958--87419064 Score: 85
Period size: 27 Copynumber: 4.0 Consensus size: 27
87418948 TAGATTTACC
* * *
87418958 AAAACACCCTTGTAGGATGAAA-TGACT
1 AAAATACCCCTGTAGGGT-AAAGTGACT
87418985 AAAATACCCCTGTAGGGTAAAGTGACCGT
1 AAAATACCCCTGTAGGGTAAAGTGA-C-T
* *
87419014 -AAA-GCCCCTGTAGGGTAAAGTGACC
1 AAAATACCCCTGTAGGGTAAAGTGACT
** * *
87419039 GTAATACCCCTGTATGGTAAAATGAC
1 AAAATACCCCTGTAGGGTAAAGTGAC
87419065 GAATATGCCC
Statistics
Matches: 66, Mismatches: 9, Indels: 10
0.78 0.11 0.12
Matches are distributed among these distances:
26 6 0.09
27 55 0.83
28 4 0.06
29 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (27 bp):
AAAATACCCCTGTAGGGTAAAGTGACT
Found at i:87420253 original size:25 final size:25
Alignment explanation
Indices: 87420224--87420271 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
87420214 TTATAACATG
* * *
87420224 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
87420249 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
87420272 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:87420435 original size:23 final size:23
Alignment explanation
Indices: 87420405--87420524 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
87420395 AGGAAGTGAA
87420405 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
87420428 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
87420452 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
87420475 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
87420499 AAAGGGCTTTTGCCTCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
87420522 AAA
1 AAA
87420525 AGAGGCTAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 46 0.53
24 41 0.47
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:87420460 original size:24 final size:23
Alignment explanation
Indices: 87420404--87420546 Score: 180
Period size: 24 Copynumber: 6.0 Consensus size: 23
87420394 GAGGAAGTGA
87420404 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
87420427 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
87420450 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
87420474 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
87420497 AAAAAGGGCTTTTGCCTCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
87420522 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
87420546 A
1 A
87420547 TGATAAAGCA
Statistics
Matches: 104, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
23 43 0.41
24 51 0.49
25 10 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:87420473 original size:47 final size:47
Alignment explanation
Indices: 87420403--87420546 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 47
87420393 GGAGGAAGTG
87420403 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
87420450 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
87420497 AAAAAGGGCTTTTGCCTCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTAT
87420546 A
1 A
87420547 TGATAAAGCA
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 66 0.76
48 9 0.10
49 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:87420774 original size:31 final size:31
Alignment explanation
Indices: 87420739--87420802 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
87420729 CATTTATAGT
*
87420739 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
87420770 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
87420801 AA
1 AA
87420803 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:87423546 original size:28 final size:27
Alignment explanation
Indices: 87423513--87423565 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
87423503 TTAGAATACT
*
87423513 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
87423541 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
87423566 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:87423552 original size:27 final size:27
Alignment explanation
Indices: 87423522--87423620 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
87423512 TTTAGTTTAC
87423522 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
87423549 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
87423576 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
87423603 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
87423621 CCCGATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:87423604 original size:54 final size:54
Alignment explanation
Indices: 87423517--87423639 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 54
87423507 AATACTTTAG
* * *
87423517 TTTACTAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAA-TACCCTCGA
1 TTTA-TAAAATTACCGAAATACGCTTAGCTTGTAAAAATAC-CAAAGTACCCCCGA
* * * *
87423572 TTTGTAAAATTACTGAAATAC-CTTCGACTTGTAAAATTACCAAAGTACCCCCGA
1 TTTATAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACCAAAGTACCCCCGA
*
87423626 TTTACAAAATTACC
1 TTTATAAAATTACC
87423640 ATTTTACCCC
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 7 0.12
54 46 0.82
55 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TTTATAAAATTACCGAAATACGCTTAGCTTGTAAAAATACCAAAGTACCCCCGA
Found at i:87423634 original size:27 final size:27
Alignment explanation
Indices: 87423617--87423853 Score: 233
Period size: 27 Copynumber: 8.8 Consensus size: 27
87423607 ATTACCAAAG
*
87423617 TACCCCCGATTTACAAAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
87423644 TA-CCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
87423670 TACCCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
87423697 TACCCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
** * * **
87423724 TACCTTCGACTTACAAAATTACTGTTT
1 TACCCCCGATTTACATAATTACCATTT
* * * * *
87423751 TACCCTCGATTTATAGAAGTACCGTTT
1 TACCCCCGATTTACATAATTACCATTT
** * * **
87423778 TACCCTTGATTTATAAAATTACTGTTT
1 TACCCCCGATTTACATAATTACCATTT
** * ***
87423805 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCCCGATTTACATAATTACCATTT
* *
87423832 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACATAATTAC
87423854 TAAAAAACCC
Statistics
Matches: 186, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 25 0.13
27 161 0.87
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCCCGATTTACATAATTACCATTT
Found at i:87423779 original size:81 final size:81
Alignment explanation
Indices: 87423617--87423846 Score: 275
Period size: 81 Copynumber: 2.9 Consensus size: 81
87423607 ATTACCAAAG
* * ** *
87423617 TACCCCCGATTTACAAAATTACCATTTTACC-CCGATTTACATAATTACCATTTTACCCCCGATT
1 TACCCCCGATTTACAAAATTACCATTTTACCTTCGATTTACAAAATTACTGTTTTACCCTCGATT
* *
87423681 TACATAATTACCATTT
66 TACAGAAGTACCATTT
* *
87423697 TACCCCCGATTTACATAATTACCATTTTACCTTCGACTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCCCGATTTACAAAATTACCATTTTACCTTCGATTTACAAAATTACTGTTTTACCCTCGATT
* *
87423762 TATAGAAGTACCGTTT
66 TACAGAAGTACCATTT
** * ** * *
87423778 TACCCTTGATTTATAAAATTACTGTTTTACCCTT-GATTTACAGAATTATTGTTTTACCCTCGAT
1 TACCCCCGATTTACAAAATTACCATTTTA-CCTTCGATTTACAAAATTACTGTTTTACCCTCGAT
87423842 TTACA
65 TTACA
87423847 AAATTACTAA
Statistics
Matches: 127, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 30 0.24
81 93 0.73
82 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCCCGATTTACAAAATTACCATTTTACCTTCGATTTACAAAATTACTGTTTTACCCTCGATT
TACAGAAGTACCATTT
Found at i:87423854 original size:54 final size:54
Alignment explanation
Indices: 87423617--87423855 Score: 282
Period size: 54 Copynumber: 4.4 Consensus size: 54
87423607 ATTACCAAAG
* * *
87423617 TACCCCCGATTTACAAAATTACCATTTTACCC-CGATTTACATAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* * * * *
87423670 TACCCCCGATTTACATAATTACCATTTTACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* * * * * *
87423724 TACCTTCGACTTACAAAATTACTGTTTTACCCTCGATTTATAGAAGTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* * * * ***
87423778 TACCCTTGATTTATAAAATTACTGTTTTACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
87423832 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAAAATTACTA
87423856 AAAAACCCTA
Statistics
Matches: 161, Mismatches: 24, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
53 31 0.19
54 130 0.81
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:87423882 original size:26 final size:27
Alignment explanation
Indices: 87423846--87423965 Score: 91
Period size: 27 Copynumber: 4.5 Consensus size: 27
87423836 CTCGATTTAC
87423846 AAAATTACTAAAAAACCC-TAGTCTGT
1 AAAATTACTAAAAAACCCTTAGTCTGT
* * * *
87423872 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACTAAAAAACCCTTAGTCTGT
** * * * *
87423899 AAAATTACCGAAATACCCTGAATTTGT
1 AAAATTACTAAAAAACCCTTAGTCTGT
* * * *
87423926 AAAATTACCAGAATACCCCTAG-CTTGT
1 AAAATTACTAAAAAACCCTTAGTC-TGT
87423953 AAAATTACTAAAA
1 AAAATTACTAAAA
87423966 TACCACTGGA
Statistics
Matches: 74, Mismatches: 18, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
26 16 0.22
27 58 0.78
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.29
Consensus pattern (27 bp):
AAAATTACTAAAAAACCCTTAGTCTGT
Found at i:87423912 original size:27 final size:27
Alignment explanation
Indices: 87423882--87424138 Score: 142
Period size: 27 Copynumber: 9.4 Consensus size: 27
87423872 AAAATTGCTA
87423882 AAATACCCTTGGTTTGTAAAATTACCG
1 AAATACCCTTGGTTTGTAAAATTACCG
*
87423909 AAATACCC-TGAATTTGTAAAATTACC-
1 AAATACCCTTG-GTTTGTAAAATTACCG
* * * **
87423935 AGAATACCCCTAGCTTGTAAAATTACTA
1 A-AATACCCTTGGTTTGTAAAATTACCG
* *
87423963 AAATACCAC-TGGATTGTGAAATTACCG
1 AAATACC-CTTGGTTTGTAAAATTACCG
*** * *
87423990 AAATACCCTCAATTTGTCAAAGTTACCA
1 AAATACCCTTGGTTTGT-AAAATTACCG
* * ** * *
87424018 AAATACCCCTGATTTACAAAGTTACAG
1 AAATACCCTTGGTTTGTAAAATTACCG
* * **
87424045 AAATACCCTTGACTTTCTAAAAATTATAG
1 AAATACCCTTG-GTTTGT-AAAATTACCG
* ** **
87424074 AAATACCATTGGTTTACAAAATTATTG
1 AAATACCCTTGGTTTGTAAAATTACCG
* * * *
87424101 AAATACCTTTGGTTTGTAGATTTACCA
1 AAATACCCTTGGTTTGTAAAATTACCG
*
87424128 AAACACCCTTG
1 AAATACCCTTG
87424139 TAGGATGAAA
Statistics
Matches: 176, Mismatches: 45, Indels: 18
0.74 0.19 0.08
Matches are distributed among these distances:
26 4 0.02
27 126 0.72
28 28 0.16
29 18 0.10
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGGTTTGTAAAATTACCG
Found at i:87423943 original size:54 final size:54
Alignment explanation
Indices: 87423846--87424054 Score: 169
Period size: 54 Copynumber: 3.9 Consensus size: 54
87423836 CTCGATTTAC
* * * * * *
87423846 AAAATTACTAAAAAACCCT-AGTCTGTAAAATTGCTA-AAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTGA-TTTGTAAAATTACCAGAAATACCCTTAGTTTGT
* * *
87423899 AAAATTACCGAAATACCCTGAATTTGTAAAATTACCAG-AATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCTG-ATTTGTAAAATTACCAGAAATACCCTTAGTTTGT
* * * *
87423953 AAAATTACTAAAATACCACTGGA-TTGTGAAATTACC-GAAATACCCTCAATTTGT
1 AAAATTACCAAAATACC-CT-GATTTGTAAAATTACCAGAAATACCCTTAGTTTGT
* ** *
87424007 CAAAGTTACCAAAATACCCCTGATTTACAAAGTTA-CAGAAATACCCTT
1 -AAAATTACCAAAATA-CCCTGATTTGTAAAATTACCAGAAATACCCTT
87424055 GACTTTCTAA
Statistics
Matches: 123, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
53 17 0.14
54 67 0.54
55 36 0.29
56 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTACCAGAAATACCCTTAGTTTGT
Found at i:87423985 original size:81 final size:82
Alignment explanation
Indices: 87423832--87424027 Score: 249
Period size: 81 Copynumber: 2.4 Consensus size: 82
87423822 ATTATTGTTT
* * * * * *
87423832 TACCCTCGATTT-ACAAAATTACTAAAA-AACCCTAGTCTGTAAAATTGCTAAAATACCCTTGGT
1 TACCCTCAATTTGTCAAAATTACCAAAATACCCCTAGTCTGTAAAATTACTAAAATACCCTTGGA
87423895 TTGTAAAATTACCGAAA
66 TTGTAAAATTACCGAAA
* *
87423912 TACCCTGAATTTGT-AAAATTACCAGAATACCCCTAG-CTTGTAAAATTACTAAAATACCAC-TG
1 TACCCTCAATTTGTCAAAATTACCAAAATACCCCTAGTC-TGTAAAATTACTAAAATACC-CTTG
*
87423974 GATTGTGAAATTACCGAAA
64 GATTGTAAAATTACCGAAA
*
87423993 TACCCTCAATTTGTCAAAGTTACCAAAATACCCCT
1 TACCCTCAATTTGTCAAAATTACCAAAATACCCCT
87424028 GATTTACAAA
Statistics
Matches: 99, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
80 22 0.22
81 58 0.59
82 19 0.19
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (82 bp):
TACCCTCAATTTGTCAAAATTACCAAAATACCCCTAGTCTGTAAAATTACTAAAATACCCTTGGA
TTGTAAAATTACCGAAA
Found at i:87424199 original size:27 final size:27
Alignment explanation
Indices: 87424169--87424260 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
87424159 ACCCCTATTA
* *
87424169 GGTAAAAAGATCGTAAAACCCCTGTAG
1 GGTAAAATGACCGTAAAACCCCTGTAG
* *
87424196 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAACCCCTGTAG
* * *
87424223 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAAAACCCCTGTAG
87424250 GGTAAAATGAC
1 GGTAAAATGAC
87424261 GAATATGCCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAACCCCTGTAG
Found at i:87425536 original size:20 final size:20
Alignment explanation
Indices: 87425513--87425550 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
87425503 AACATGGTAT
87425513 GTATGATATGCACATGATAC
1 GTATGATATGCACATGATAC
*
87425533 GTATGATATGCACTTGAT
1 GTATGATATGCACATGAT
87425551 GTATTCATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAC
Found at i:87425656 original size:24 final size:23
Alignment explanation
Indices: 87425600--87425766 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
87425590 GAGGAAGTGA
87425600 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
87425623 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
87425646 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
87425670 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
87425694 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
87425717 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
87425742 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
87425766 A
1 A
87425767 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 43 0.33
24 76 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:87425669 original size:47 final size:47
Alignment explanation
Indices: 87425600--87425766 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 47
87425590 GAGGAAGTGA
*
87425600 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
87425646 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
87425694 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
87425742 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
87425767 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 65 0.60
48 31 0.29
49 12 0.11
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:87425716 original size:71 final size:71
Alignment explanation
Indices: 87425600--87425765 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
87425590 GAGGAAGTGA
* *
87425600 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
87425665 GTTATC
66 GTTATC
*
87425671 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
87425736 GTTATT
66 GTTATC
*
87425742 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
87425766 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 77 0.88
72 11 0.12
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:87425994 original size:31 final size:31
Alignment explanation
Indices: 87425959--87426022 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
87425949 CATTTACAGT
*
87425959 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
87425990 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
87426021 AA
1 AA
87426023 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:87428988 original size:513 final size:513
Alignment explanation
Indices: 87428023--87429831 Score: 3198
Period size: 513 Copynumber: 3.5 Consensus size: 513
87428013 ACCCTTTGTC
*
87428023 CAATCCTAATTCTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGT-ACGG
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAAC-G
* *
87428087 CCATAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTATGAGTTAA
65 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAA
*
87428152 TCGGGTTAACTAGTCATTTCTTT-AAAAAAATTAGTTAGCTTAATTTCATTT-AAAATC-AGTAA
130 TCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGA-TAA
87428214 ATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
194 ATAATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGG
*
87428279 TTAAAATAACTATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGCAA-TTACAATAT
259 TTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAG-AAGTTACAATAT
*
87428343 TAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCATGAATATCA
323 TAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCA
*
87428408 TGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATGGCCCAATAT
388 TGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATAT
* *
87428473 TTTCCTCCTTGCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
453 TTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
87428534 CAATCCTAATTGTCCAAACCTACTTGTAATAGCAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * *
87428599 CCTACAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAACTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAAT
* * * *
87428664 CGGTTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGTTTAATTTTATTTTAAAATCGATAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAAT
* *
87428729 AATATTCTGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATACTTTTTGGTT
196 AATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
87428794 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAA
261 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAA
*
87428859 CTAAATAGGTATATAATATTCGGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
326 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
* * *
87428924 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGAGAGTACCGCCCTATATTTT
391 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
*
87428989 CCTCTTTCCATTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
456 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
87429047 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAGATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
87429112 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAAT
* *
87429177 AGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAAT
*
87429242 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
196 AATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* * *
87429307 AAAATGAATATTTTATTAAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATTTTAA
261 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAA
*
87429372 CTAAATAGGTATATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
326 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
87429437 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
391 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
*
87429502 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTTCTCGATCA
456 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
87429560 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAATTATGTTGTGTTTGTAACAC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* *
87429625 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGTTGAAAGCCAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAAT
87429690 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAAT
131 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAAT
87429755 AATATTCC-AGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
196 AATATTCCGA-AAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
87429819 TAAAATAAATATT
260 TAAAATAAATATT
87429832 GTAACAGCCC
Statistics
Matches: 1234, Mismatches: 58, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
511 140 0.11
512 29 0.02
513 1064 0.86
514 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (513 bp):
CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGAGTTCCGGGTGAAAGCTAGGAGTTAAT
CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGATAAAT
AATATTCCGAAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAA
CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
Found at i:87431192 original size:12 final size:12
Alignment explanation
Indices: 87431175--87431284 Score: 71
Period size: 12 Copynumber: 8.8 Consensus size: 12
87431165 TTTTTCTTTG
87431175 TATATTATTTAT
1 TATATTATTTAT
87431187 TATATTATTTAT
1 TATATTATTTAT
*
87431199 ATATTATTATATAT
1 -TA-TATTATTTAT
*
87431213 TATATTACTTACAT
1 TATATTA-TT-TAT
* * *
87431227 TTTAATATATAT
1 TATATTATTTAT
*
87431239 ATATATTTTTTA-
1 -TATATTATTTAT
*
87431251 TATATTACTTAT
1 TATATTATTTAT
* *
87431263 CATATTGTTTA-
1 TATATTATTTAT
87431274 TATTATTATTT
1 TA-TATTATTT
87431285 GTTTATAAAT
Statistics
Matches: 73, Mismatches: 18, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
11 10 0.14
12 34 0.47
13 13 0.18
14 16 0.22
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (12 bp):
TATATTATTTAT
Found at i:87431206 original size:26 final size:26
Alignment explanation
Indices: 87431177--87431268 Score: 103
Period size: 26 Copynumber: 3.4 Consensus size: 26
87431167 TTTCTTTGTA
*
87431177 TATTATTTATTATATTATTTATATAT
1 TATTATATATTATATTATTTATATAT
* * *
87431203 TATTATATATTATATTACTTACATTT
1 TATTATATATTATATTATTTATATAT
* *
87431229 TAATATATATATATATTTTTTATATAT
1 TATTATATAT-TATATTATTTATATAT
87431256 TACTTATCATATT
1 TA-TTAT-ATATT
87431269 GTTTATATTA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 31 0.58
27 14 0.26
28 4 0.08
29 4 0.08
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
TATTATATATTATATTATTTATATAT
Found at i:87431217 original size:38 final size:37
Alignment explanation
Indices: 87431175--87431283 Score: 112
Period size: 38 Copynumber: 2.9 Consensus size: 37
87431165 TTTTTCTTTG
* *
87431175 TATATTATTTATTATATTATTTATATATTATTATATA
1 TATATTACTTATCATATTATTTATATATTATTATATA
* * * *
87431212 TTATATTACTTA-CATTTTAATATATATATATATTTTTTA
1 -TATATTACTTATCATATT-ATTTATATAT-TATTATATA
*
87431251 TATATTACTTATCATATTGTTTATATTATTATT
1 TATATTACTTATCATATTATTTATA-TATTATT
87431284 TGTTTATAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
37 4 0.07
38 39 0.67
39 15 0.26
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (37 bp):
TATATTACTTATCATATTATTTATATATTATTATATA
Found at i:87431284 original size:38 final size:38
Alignment explanation
Indices: 87431158--87431291 Score: 109
Period size: 38 Copynumber: 3.5 Consensus size: 38
87431148 TAAAAGGGTA
* * *
87431158 TATATTATT-TTTCTTTGTATATTATTTATTATATTATT
1 TATATTATTATTTCTTTATATATTACTTATCATATT-TT
* * *
87431196 TATA-TATTA-TTATATATTATATTACTTA-CAT-TTTAA
1 TATATTATTATTTCTTTA-TATATTACTTATCATATTT-T
87431232 TATATATATATATTT-TTTATATATTACTTATCATATTGTT
1 TATAT-TAT-TATTTCTTTATATATTACTTATCATATT-TT
*
87431272 TATATTATTATTTGTTTATA
1 TATATTATTATTTCTTTATA
87431292 AATTTTATTA
Statistics
Matches: 77, Mismatches: 8, Indels: 21
0.73 0.08 0.20
Matches are distributed among these distances:
35 1 0.01
36 6 0.08
37 10 0.13
38 33 0.43
39 17 0.22
40 9 0.12
41 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (38 bp):
TATATTATTATTTCTTTATATATTACTTATCATATTTT
Found at i:87431315 original size:19 final size:20
Alignment explanation
Indices: 87431276--87431317 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
87431266 ATTGTTTATA
*
87431276 TTATTATTTGTTTATAAATT
1 TTATTATATGTTTATAAATT
*
87431296 TTATTATATG-TTATATATT
1 TTATTATATGTTTATAAATT
87431315 TTA
1 TTA
87431318 CCATATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
TTATTATATGTTTATAAATT
Found at i:87431598 original size:16 final size:16
Alignment explanation
Indices: 87431562--87431594 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
87431552 ATATCTTTTT
*
87431562 TATTTTATTTGATTTA
1 TATTTTATATGATTTA
87431578 TATTTTATATG-TTTA
1 TATTTTATATGATTTA
87431593 TA
1 TA
87431595 ATTTGCTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (16 bp):
TATTTTATATGATTTA
Found at i:87438425 original size:47 final size:47
Alignment explanation
Indices: 87438312--87438652 Score: 576
Period size: 47 Copynumber: 7.3 Consensus size: 47
87438302 CCCTTCGGGA
* *
87438312 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
87438358 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
87438405 CTTCTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
87438452 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
87438499 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
87438546 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
87438593 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
87438640 CTTATCACATATA
1 CTTATCACATATA
87438653 CATATCTTGT
Statistics
Matches: 275, Mismatches: 19, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
46 41 0.15
47 234 0.85
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:87441616 original size:22 final size:23
Alignment explanation
Indices: 87441591--87441636 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
87441581 CAACCAAATC
87441591 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
87441613 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
87441636 A
1 A
87441637 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:87441642 original size:23 final size:23
Alignment explanation
Indices: 87441598--87441642 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
87441588 ATCAATTCAA
*
87441598 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
87441621 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
87441643 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:87449577 original size:28 final size:28
Alignment explanation
Indices: 87449546--87449608 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
87449536 TTGATATTTT
87449546 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
87449574 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
87449602 GTACACT
1 GCACACT
87449609 GAGTACCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:87451198 original size:26 final size:26
Alignment explanation
Indices: 87451169--87451276 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
87451159 ATGTACAAAT
87451169 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87451195 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87451221 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87451247 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87451273 TGAT
1 TGAT
87451277 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87457618 original size:29 final size:29
Alignment explanation
Indices: 87457570--87457755 Score: 160
Period size: 29 Copynumber: 6.4 Consensus size: 29
87457560 GATCTCATTT
* *
87457570 CACACACTTAGTGCCCCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCG
*
87457601 CACACACAGTGCCTCAACAACTGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
* **** * * *
87457630 TACACACAGTG-CTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCG
* *
87457658 CACAAACAGTGCCTTAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
**** * *
87457687 CACACACAGTG-CTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*
87457715 CACACACAGCGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
87457744 CACACACAGTGC
1 CACACACAGTGC
87457756 TCGGTTACGG
Statistics
Matches: 116, Mismatches: 37, Indels: 6
0.73 0.23 0.04
Matches are distributed among these distances:
28 39 0.34
29 70 0.60
31 7 0.06
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:87457668 original size:57 final size:57
Alignment explanation
Indices: 87457601--87457785 Score: 316
Period size: 57 Copynumber: 3.2 Consensus size: 57
87457591 ACCGATCTTG
* *
87457601 CACACACAGTGCCTCAACAACTGATCTCGTACACACAGTGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
* * *
87457658 CACAAACAGTGCCTTAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
*
87457715 CACACACAGCGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
87457772 CACACACAGTGCCT
1 CACACACAGTGCCT
87457786 ATGTTCACTT
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 118 1.00
ACGTcount: A:0.30, C:0.36, G:0.18, T:0.17
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
Found at i:87457719 original size:28 final size:28
Alignment explanation
Indices: 87457626--87457783 Score: 136
Period size: 28 Copynumber: 5.6 Consensus size: 28
87457616 AACAACTGAT
*
87457626 CTCGTACACACAGTGCTCGGTTACGGAA
1 CTCGCACACACAGTGCTCGGTTACGGAA
* * ***** * *
87457654 CTCACACAAACAGTGCCTTAACAACCGAT
1 CTCGCACACACAGTG-CTCGGTTACGGAA
87457683 CTCGCACACACAGTGCTCGGTTACGGAA
1 CTCGCACACACAGTGCTCGGTTACGGAA
* **** * *
87457711 CTCGCACACACAGCGCCTCAACAACCGAT
1 CTCGCACACACAGTG-CTCGGTTACGGAA
87457740 CTCGCACACACAGTGCTCGGTTACGGAA
1 CTCGCACACACAGTGCTCGGTTACGGAA
*
87457768 CTCACACACACAGTGC
1 CTCGCACACACAGTGC
87457784 CTATGTTCAC
Statistics
Matches: 94, Mismatches: 34, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
28 54 0.57
29 40 0.43
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.16
Consensus pattern (28 bp):
CTCGCACACACAGTGCTCGGTTACGGAA
Found at i:87459772 original size:26 final size:26
Alignment explanation
Indices: 87459743--87459802 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
87459733 TCCCTTTGAA
* * *
87459743 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
87459769 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
87459797 CCATTC
1 TCATTC
87459803 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:87459788 original size:28 final size:28
Alignment explanation
Indices: 87459757--87459828 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
87459747 TCGATATTTT
*
87459757 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
87459785 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
87459813 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
87459829 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:87463939 original size:43 final size:43
Alignment explanation
Indices: 87463891--87463991 Score: 184
Period size: 43 Copynumber: 2.3 Consensus size: 43
87463881 GGTTAAATCA
87463891 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCT
* *
87463934 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCTT
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCT
87463977 AGCAGGCTTCGTGCC
1 AGCAGGCTTCGTGCC
87463992 TAGCAGGCTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.11, C:0.26, G:0.34, T:0.30
Consensus pattern (43 bp):
AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCT
Found at i:87463988 original size:16 final size:16
Alignment explanation
Indices: 87463967--87464007 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
87463957 GTATTCGGGC
*
87463967 CTTCGTGCTTAGCAGG
1 CTTCGTGCCTAGCAGG
87463983 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87463999 CTTCGTGCC
1 CTTCGTGCC
87464008 GGTGATGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.10, C:0.32, G:0.29, T:0.29
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:87464021 original size:59 final size:59
Alignment explanation
Indices: 87463924--87464050 Score: 227
Period size: 59 Copynumber: 2.2 Consensus size: 59
87463914 GTATTCGGGC
* * *
87463924 CTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCTTAGCAGG
1 CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
87463983 CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
87464042 CTTCGTGCC
1 CTTCGTGCC
87464051 GGTGATGTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.11, C:0.28, G:0.31, T:0.30
Consensus pattern (59 bp):
CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
Found at i:87464030 original size:43 final size:43
Alignment explanation
Indices: 87463979--87464071 Score: 170
Period size: 43 Copynumber: 2.2 Consensus size: 43
87463969 TCGTGCTTAG
87463979 CAGG-CTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
1 CAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
87464021 CAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
1 CAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
*
87464064 CGGGCCTT
1 CAGGCCTT
87464072 TGTATTCGGG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 4 0.08
43 45 0.92
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.30
Consensus pattern (43 bp):
CAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
Found at i:87464067 original size:102 final size:101
Alignment explanation
Indices: 87463891--87464191 Score: 450
Period size: 102 Copynumber: 3.0 Consensus size: 101
87463881 GGTTAAATCA
*
87463891 AGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATG
1 AGCAGGCTTCGTGCCGGTGATGTGTATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
87463956 TGTATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCCT
65 TGTATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCCT
87463993 AGCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
1 AGCAGGCTTCGTGCCGGTGATGTGTATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
* * * *
87464058 TGTATTCGGGCCTTTGT-ATT--CGGGCCTTTGTGCCT
65 TGTATTCGGGCCTTCGTGCTTAGCAGG-CTTCGTGCCT
*
87464093 AGCA-GCTTCGTGCCGGTGATGTGTATTCGGTCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATG
1 AGCAGGCTTCGTGCCGGTGATGTGTATTCGG-CCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
** *
87464157 TGTAAACGGGCCTTCGTGCCTAGCA-GCTTCGTGCC
65 TGTATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCC
87464192 GGTGATGTGT
Statistics
Matches: 180, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
98 2 0.01
99 73 0.41
100 22 0.12
101 3 0.02
102 80 0.44
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.31
Consensus pattern (101 bp):
AGCAGGCTTCGTGCCGGTGATGTGTATTCGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGT
GTATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCCT
Found at i:87464077 original size:14 final size:14
Alignment explanation
Indices: 87464058--87464088 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
87464048 GCCGGTGATG
87464058 TGTATTCGGGCCTT
1 TGTATTCGGGCCTT
87464072 TGTATTCGGGCCTT
1 TGTATTCGGGCCTT
87464086 TGT
1 TGT
87464089 GCCTAGCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.19, G:0.29, T:0.45
Consensus pattern (14 bp):
TGTATTCGGGCCTT
Found at i:87464120 original size:56 final size:57
Alignment explanation
Indices: 87464015--87464127 Score: 192
Period size: 56 Copynumber: 2.0 Consensus size: 57
87464005 GCCGGTGATG
87464015 TGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTT
1 TGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTT
* * *
87464072 TGTATTCGGGCCTTTGTGCCTAGCA-GCTTCGTGCCGGTGATGTGTATTCGGTCCTT
1 TGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTT
87464128 CGTGCCTAGC
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
56 30 0.57
57 23 0.43
ACGTcount: A:0.10, C:0.24, G:0.31, T:0.35
Consensus pattern (57 bp):
TGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTT
Found at i:87464158 original size:43 final size:43
Alignment explanation
Indices: 87464072--87464573 Score: 638
Period size: 43 Copynumber: 11.6 Consensus size: 43
87464062 TTCGGGCCTT
*
87464072 TGTATTCGGGCCTTTGTGCCTAGCA-GCTTCGTGCCGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
* *
87464114 TGTATTCGGTCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
**
87464157 TGTAAACGGGCCTTCGTGCCTAGCA-GCTTCGTGCCGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
* *
87464199 TGTATTCGGTCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
* *
87464242 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGATGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
*
87464285 TGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
87464328 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
* * * *
87464371 TGTATTCAGGCCTTCGTGTCTAGCAGGCTTCGTACTGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
**
87464414 TGTATTCGGGCCTTCGTGCCTAGCAGGCTAT-GATGCCGGTGAAA
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCT-TCG-TGCCGGTGATG
* * * **
87464458 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA-G
1 T-GTATTCGGGCCTTCGTGCCTAGCAGGCT-TCGTGCCGGTGATG
* * * * **
87464502 ATACTATTCGGGCTTTCGAGCCTAGCAGGCTATAGTGCCGGTGAAA
1 -T-GTATTCGGGCCTTCGTGCCTAGCAGGCT-TCGTGCCGGTGATG
*
87464548 TG-ATATCGGGCC-TCGAGCCTAGCAGG
1 TGTAT-TCGGGCCTTCGTGCCTAGCAGG
87464574 TGAAAAAAGC
Statistics
Matches: 411, Mismatches: 40, Indels: 17
0.88 0.09 0.04
Matches are distributed among these distances:
42 61 0.15
43 258 0.63
44 15 0.04
45 77 0.19
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (43 bp):
TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
Found at i:87467997 original size:133 final size:131
Alignment explanation
Indices: 87467805--87468062 Score: 376
Period size: 133 Copynumber: 2.0 Consensus size: 131
87467795 CAGGCTAAAG
*
87467805 CATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTAACCTTCAGGTGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
* *
87467870 TTGTTAGAGAACAAATCGAAGA-AACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAA
66 TTGTCAGAGAACAAATCGAAGATAACAAATTTGGCATCTCCATATT-GACAGAGAGCAGATTGAA
87467934 GA
130 GA
**
87467936 CATAGCAGATCTAACCTTC-GGATGTTTTTGCATCGAAGCAGATCCAAGATGATTTGGCATCTCT
1 CATAGCAGATCTAACCTTCAGG-TGTTTACGC-T-GAAGCAGATCCAAGATGATTTGGCATCTCT
* * * **
87468000 GTATTGTCAGAGAGCAGATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGAGCAGAT
63 GTATTGTCAGAGAACAAATCGAAGATAACAAATTTGGCATCTCCATATTGACAGAGAGCAGAT
87468063 CAAAGATAGC
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
130 2 0.02
131 25 0.22
132 1 0.01
133 65 0.58
134 20 0.18
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (131 bp):
CATAGCAGATCTAACCTTCAGGTGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
TTGTCAGAGAACAAATCGAAGATAACAAATTTGGCATCTCCATATTGACAGAGAGCAGATTGAAG
A
Found at i:87468043 original size:44 final size:44
Alignment explanation
Indices: 87467986--87468257 Score: 411
Period size: 44 Copynumber: 6.2 Consensus size: 44
87467976 GATCCAAGAT
87467986 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * *
87468030 AATTTGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * *
87468074 GATTTGGCATCTCTATATTGTTAGAGAGCAGATAGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
87468118 GATTTGGCATCTTTGTATTGTCAGAGAGCAGATCGAAGGTAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
87468162 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * *
87468206 GATTTGGCATCTCTGTATTGTCA-AGGAGTAGATCGGAGATAACA
1 GATTTGGCATCTCTGTATTGTCAGA-GAGCAGATCGAAGATAGCA
87468250 GATTTGGC
1 GATTTGGC
87468258 GTTCGTGAGT
Statistics
Matches: 204, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 1 0.00
44 203 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Done.