Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 294 of 328
Found at i:87785268 original size:14 final size:14
Alignment explanation
Indices: 87785249--87785303 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
87785239 ATGGTCAGGG
*
87785249 TTTATGTTTTAGGA
1 TTTATGGTTTAGGA
*
87785263 TTTATGGTTTAGGG
1 TTTATGGTTTAGGA
*
87785277 TTTATGGATTAGGA
1 TTTATGGTTTAGGA
*
87785291 GTTTAGGGTTTAG
1 -TTTATGGTTTAG
87785304 ATTAATTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
14 24 0.71
15 10 0.29
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
TTTATGGTTTAGGA
Found at i:87785278 original size:7 final size:7
Alignment explanation
Indices: 87785245--87785303 Score: 55
Period size: 7 Copynumber: 8.3 Consensus size: 7
87785235 GTTCATGGTC
87785245 AGGGTTT
1 AGGGTTT
* *
87785252 ATGTTTT
1 AGGGTTT
*
87785259 AGGATTT
1 AGGGTTT
*
87785266 ATGGTTT
1 AGGGTTT
87785273 AGGGTTT
1 AGGGTTT
* *
87785280 ATGGATT
1 AGGGTTT
87785287 AGGAGTTT
1 AGG-GTTT
87785295 AGGGTTT
1 AGGGTTT
87785302 AG
1 AG
87785304 ATTAATTAGT
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
7 34 0.85
8 6 0.15
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (7 bp):
AGGGTTT
Found at i:87785418 original size:7 final size:7
Alignment explanation
Indices: 87785402--87785435 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
87785392 TATCATTATA
87785402 GTTTAAG
1 GTTTAAG
*
87785409 GTTTAGG
1 GTTTAAG
87785416 GTTTAAG
1 GTTTAAG
*
87785423 GTTTAGG
1 GTTTAAG
87785430 GTTTAA
1 GTTTAA
87785436 AGTGTATGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (7 bp):
GTTTAAG
Found at i:87785421 original size:14 final size:14
Alignment explanation
Indices: 87785402--87785435 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
87785392 TATCATTATA
87785402 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
87785416 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
87785430 GTTTAA
1 GTTTAA
87785436 AGTGTATGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:87785478 original size:15 final size:15
Alignment explanation
Indices: 87785458--87785505 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
87785448 ACTGTTTTAA
87785458 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
87785473 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* * *
87785487 GATTTATGGTTTAAG
1 GGTTTATGGATTATG
87785502 GGTT
1 GGTT
87785506 GATGTTTAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:87785590 original size:21 final size:21
Alignment explanation
Indices: 87785403--87785590 Score: 69
Period size: 22 Copynumber: 8.9 Consensus size: 21
87785393 ATCATTATAG
* * *
87785403 TTTAAGGTTTAGGGTTTAAGG
1 TTTAGGGTTTAGGGTTTATGA
** *
87785424 TTTAGGGTTTAAAGTGTATGA
1 TTTAGGGTTTAGGGTTTATGA
* * * *
87785445 GTTACTGTTTTAAGGTTTATGGA
1 TTTA-GGGTTTAGGGTTTAT-GA
*
87785468 -TTATGGGTTTAGGGATTATGA
1 TTTA-GGGTTTAGGGTTTATGA
* *
87785489 TTTATGGTTTAAGGGTTGATG-
1 TTTAGGGTTT-AGGGTTTATGA
* * * *
87785510 TTTAAGGCTTAGGGGTTAGGA
1 TTTAGGGTTTAGGGTTTATGA
* * * * *
87785531 GTTA-AGTGTTAGGTTTTTAGGG
1 TTTAGGGT-TTAGG-GTTTATGA
* * *
87785553 TTTAGAGATTA-TGTTTATGA
1 TTTAGGGTTTAGGGTTTATGA
87785573 TTTAGGGTTTAGGGTTTA
1 TTTAGGGTTTAGGGTTTA
87785591 GAGGATAGGG
Statistics
Matches: 119, Mismatches: 39, Indels: 18
0.68 0.22 0.10
Matches are distributed among these distances:
20 22 0.18
21 46 0.39
22 47 0.39
23 4 0.03
ACGTcount: A:0.23, C:0.01, G:0.31, T:0.45
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTATGA
Found at i:87785716 original size:314 final size:309
Alignment explanation
Indices: 87785000--87785721 Score: 814
Period size: 314 Copynumber: 2.3 Consensus size: 309
87784990 TATGACTAAT
* * *
87785000 TGTTTTTAATTTATATGTTAAATATTTTCTTATATAATTGTAAAAGAGATAGTATTAATTTTAAA
1 TGTTTTTAATTTATATATTAAATATTTTATTATATAATTGTAAAAGAGATAATATTAATTTTAAA
* * * * * * *
87785065 ATGTTGAGTTAATTATCATTATAGTTTAGGGTTTATGATATATGGTTAAGGGTTTAATGTTTATG
66 ATATTGA--AAATTATCATTATAGTTTAAGGTTTAGGATATAAGGTTAAGGGTTTAAAGTGTATG
* *
87785130 AGTTACTATTTTAAGTTTTATGGATTATAGGTTTAGGGATTATGGTTTAAGGGTGATTTAAGGGT
129 AGTTACTATTTTAAGGTTTATGGATTATAGGTTTAGGGATTATGATTTAA--GTGATTTAAGGGT
* * * * * *
87785195 TGGAGTTTAAGGTTTAGGTGTTGTGGGTTAAGGGTTAATGGTTCATGGTCAGGGTTTATGTTTTA
192 TGGAGTTTAAGGCTTAGGGGTTGTGAGTTAAGGGTTAATGGTTCAGGGTCAGAGATTATGTTTTA
* * * *
87785260 GGATTTATGGTTTAGGGTTTATGGATTAGGAGTTTAGGGTTTAGATTAATTAG
257 GGATTTAGGGTTTAGGGTTTATGGATTAGGAGTTTAAGGCTTAGATTAATTAA
* *
87785313 TGTTTTTTAATCTATATGA-TAAATATTTTATTATATAATTATAAAAGAGATAATATTAATTTTA
1 TG-TTTTTAATTTATAT-ATTAAATATTTTATTATATAATTGTAAAAGAGATAATATTAATTTTA
* * *
87785377 AAATATTGAATTAATTATCATTATAGTTTAAGGTTTAGGGTTTAAGGTTTAGGGTTTAAAGTGTA
64 AAATATTGAA--AATTATCATTATAGTTTAAGGTTTAGGATATAAGGTTAAGGGTTTAAAGTGTA
* * *
87785442 TGAGTTACTGTTTTAAGGTTTATGGATTATGGGTTTAGGGATTATGATTT-A-TGGTTTAAGGGT
127 TGAGTTACTATTTTAAGGTTTATGGATTATAGGTTTAGGGATTATGATTTAAGTGATTTAAGGGT
* * *
87785505 T-GATGTTTAAGGCTTAGGGGTTAG-GAGTTAAGTGTT-A-GGTTTTTAGGGTTTAGAGATTATG
192 TGGA-GTTTAAGGCTTAGGGGTT-GTGAGTTAAGGGTTAATGG--TTCAGGG-TCAGAGATTATG
* * *
87785566 -TTTATGATTTAGGGTTTAGGGTTTAGAGGATAGGGGTTAGGGGTTTAAGGCTTAGATTAATTAA
252 TTTTAGGATTTAGGGTTTAGGGTTT-----AT--GGATTAGGAGTTTAAGGCTTAGATTAATTAA
* * * *
87785630 TGTTTTGTAATTTATATATTAAACAATTTATTATATAATTGTAAAATAGATAATTTTAATTTTAA
1 TGTTTT-TAATTTATATATTAAATATTTTATTATATAATTGTAAAAGAGATAATATTAATTTTAA
* *
87785695 TATATT-AAAATTATGATTATAGTTTAA
65 AATATTGAAAATTATCATTATAGTTTAA
87785722 ATTATGTAAG
Statistics
Matches: 347, Mismatches: 44, Indels: 35
0.81 0.10 0.08
Matches are distributed among these distances:
308 2 0.01
309 3 0.01
310 65 0.19
311 10 0.03
313 3 0.01
314 172 0.50
315 2 0.01
316 7 0.02
317 83 0.24
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.46
Consensus pattern (309 bp):
TGTTTTTAATTTATATATTAAATATTTTATTATATAATTGTAAAAGAGATAATATTAATTTTAAA
ATATTGAAAATTATCATTATAGTTTAAGGTTTAGGATATAAGGTTAAGGGTTTAAAGTGTATGAG
TTACTATTTTAAGGTTTATGGATTATAGGTTTAGGGATTATGATTTAAGTGATTTAAGGGTTGGA
GTTTAAGGCTTAGGGGTTGTGAGTTAAGGGTTAATGGTTCAGGGTCAGAGATTATGTTTTAGGAT
TTAGGGTTTAGGGTTTATGGATTAGGAGTTTAAGGCTTAGATTAATTAA
Found at i:87787964 original size:50 final size:50
Alignment explanation
Indices: 87787830--87788021 Score: 251
Period size: 50 Copynumber: 3.8 Consensus size: 50
87787820 TATGTAGCCA
* * *
87787830 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CC
1 AACTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCC
* * * *
87787879 AATTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCT
1 AACTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCC
* * *
87787929 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCG
1 AACTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCC
* * *
87787979 AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 AA-CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
87788022 TGCGACCTAG
Statistics
Matches: 125, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
49 41 0.33
50 49 0.39
51 35 0.28
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
AACTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCC
Found at i:87788048 original size:101 final size:99
Alignment explanation
Indices: 87787830--87788030 Score: 276
Period size: 101 Copynumber: 2.0 Consensus size: 99
87787820 TATGTAGCCA
* * * * *
87787830 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
* *
87787895 TAGTAGCCTGCACTTAGTACTACACACGTGATCT
66 TAGTAGCCTGCACTTAGTACTACACACGCGACCT
* * * *
87787929 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
*
87787994 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT
64 CATAGTAGCCTGCACTTAGTACTACACACGCGACCT
87788030 A
1 A
87788031 GCTACATATA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 42 0.48
100 3 0.03
101 43 0.49
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
TAGTAGCCTGCACTTAGTACTACACACGCGACCT
Found at i:87788843 original size:30 final size:30
Alignment explanation
Indices: 87788807--87788867 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
87788797 TCCTTAACTC
87788807 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
87788837 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
87788867 A
1 A
87788868 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:87790088 original size:16 final size:18
Alignment explanation
Indices: 87790059--87790100 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
87790049 AAAAAAATAG
87790059 AAAAAATATGTTAAAAAT
1 AAAAAATATGTTAAAAAT
*
87790077 AAAAAAT-T-TTAAAATT
1 AAAAAATATGTTAAAAAT
*
87790093 AAACAATA
1 AAAAAATA
87790101 GTGGCGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 13 0.62
17 1 0.05
18 7 0.33
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
AAAAAATATGTTAAAAAT
Found at i:87793663 original size:15 final size:16
Alignment explanation
Indices: 87793643--87793673 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
87793633 GTTTTTGTCT
87793643 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
87793658 TATATATGATCTAAAA
1 TATATATGATCTAAAA
87793674 GCAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:87794653 original size:30 final size:30
Alignment explanation
Indices: 87794617--87794676 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
87794607 TCCTTATTTT
87794617 GCTCAATCAGGTGACCGAGATTCCGTTTAA
1 GCTCAATCAGGTGACCGAGATTCCGTTTAA
87794647 GCTCAATCAGGTGACCGAGATTCCGTTTAA
1 GCTCAATCAGGTGACCGAGATTCCGTTTAA
87794677 CAATTTTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (30 bp):
GCTCAATCAGGTGACCGAGATTCCGTTTAA
Found at i:87795160 original size:19 final size:21
Alignment explanation
Indices: 87795109--87795160 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 21
87795099 AATTAAACAT
*
87795109 AATATAAT-ATTTAACTTAGA
1 AATAAAATAATTTAACTTAGA
* *
87795129 AATAATATTATTTAA-TTA-A
1 AATAAAATAATTTAACTTAGA
87795148 AATAAAATAATTT
1 AATAAAATAATTT
87795161 TTTTAAAGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 12 0.44
20 9 0.33
21 6 0.22
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
AATAAAATAATTTAACTTAGA
Found at i:87795342 original size:43 final size:43
Alignment explanation
Indices: 87795241--87795342 Score: 132
Period size: 43 Copynumber: 2.4 Consensus size: 43
87795231 CTTTTCCCAT
* * * * * *
87795241 CTTTAGCTGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCCTGAT
1 CTTTAGCGGCATTTTTGGGAAAAGCGCCACTAAAGATCATGAC
*
87795284 CTTTAGCGACATTTTTGGGAAAAGCGCCACTAAAGATCATGAC
1 CTTTAGCGGCATTTTTGGGAAAAGCGCCACTAAAGATCATGAC
*
87795327 CTTTAGCGGCCTTTTT
1 CTTTAGCGGCATTTTT
87795343 TTTATAAACG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (43 bp):
CTTTAGCGGCATTTTTGGGAAAAGCGCCACTAAAGATCATGAC
Found at i:87795670 original size:13 final size:12
Alignment explanation
Indices: 87795640--87795680 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
87795630 ATAACATTAA
*
87795640 TAATATCCATAC
1 TAATATACATAC
87795652 TAATATACATAC
1 TAATATACATAC
87795664 ATAATATACATAC
1 -TAATATACATAC
87795677 TAAT
1 TAAT
87795681 TTATCAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 15 0.56
13 12 0.44
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (12 bp):
TAATATACATAC
Found at i:87796065 original size:43 final size:43
Alignment explanation
Indices: 87795888--87796065 Score: 146
Period size: 43 Copynumber: 4.1 Consensus size: 43
87795878 AGATAACGCC
* * * * * *
87795888 GCTAAAAGTCATGGCCTTTAGCGACGCTTTCCCCACAAACGCC
1 GCTAAAAATTATGGCCTTTAGCGACGCTTTTCCCAAAAACACA
* * * *
87795931 GCTAAAAGTTATGGCCTTTA-CTAACACTTTTCCTAAAAACACCA
1 GCTAAAAATTATGGCCTTTAGC-GACGCTTTTCCCAAAAACA-CA
* ** * * *
87795975 -CTAAAAATAATAACCTTTAGCGACGCTTTTTCTAAAAACACC
1 GCTAAAAATTATGGCCTTTAGCGACGCTTTTCCCAAAAACACA
* *
87796017 CCTAAAAATTATGGCCTTTAGC-AGCGCTTTTCCCAAAAATACA
1 GCTAAAAATTATGGCCTTTAGCGA-CGCTTTTCCCAAAAACACA
87796060 GCTAAA
1 GCTAAA
87796066 GGTTATGAAA
Statistics
Matches: 106, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
42 3 0.03
43 101 0.95
44 2 0.02
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (43 bp):
GCTAAAAATTATGGCCTTTAGCGACGCTTTTCCCAAAAACACA
Found at i:87796218 original size:6 final size:6
Alignment explanation
Indices: 87796204--87796278 Score: 53
Period size: 6 Copynumber: 12.2 Consensus size: 6
87796194 ATTCATTATC
* * *
87796204 AAATTA AAATAA AAATAA AAATATA GAATCAA AACT-A AAATAA ATAATAA
1 AAATAA AAATAA AAATAA AAATA-A AAAT-AA AAATAA AAATAA A-AATAA
* * * *
87796254 AAATTA AATTAA ATATAA ATATAA A
1 AAATAA AAATAA AAATAA AAATAA A
87796279 TAAAATACAG
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
5 4 0.07
6 37 0.67
7 13 0.24
8 1 0.02
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (6 bp):
AAATAA
Found at i:87796256 original size:19 final size:18
Alignment explanation
Indices: 87796211--87796282 Score: 58
Period size: 19 Copynumber: 3.9 Consensus size: 18
87796201 ATCAAATTAA
* *
87796211 AATAAAAATAAAAATATAG
1 AATAAAAAT-AAAATAAAT
*
87796230 AATCAAAACTAAAATAAAT
1 AAT-AAAAATAAAATAAAT
*
87796249 AATAAAAATTAAATTAAAT
1 AATAAAAA-TAAAATAAAT
*
87796268 -ATAAATAT-AAATAAA
1 AATAAAAATAAAATAAA
87796283 ATACAGCAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
16 6 0.14
17 1 0.02
18 10 0.23
19 22 0.50
20 5 0.11
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (18 bp):
AATAAAAATAAAATAAAT
Found at i:87796271 original size:25 final size:24
Alignment explanation
Indices: 87796204--87796278 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 24
87796194 ATTCATTATC
87796204 AAATTAAAATAAAAATAAA-AATATA
1 AAATTAAAAT-AAAATAAATAATA-A
* *
87796229 GAATCAAAACTAAAATAAATAATAA
1 AAATTAAAA-TAAAATAAATAATAA
*
87796254 AAATTAAATTAAATATAAAT-ATAA
1 AAATTAAAATAAA-ATAAATAATAA
87796278 A
1 A
87796279 TAAAATACAG
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
24 9 0.21
25 28 0.67
26 5 0.12
ACGTcount: A:0.71, C:0.03, G:0.01, T:0.25
Consensus pattern (24 bp):
AAATTAAAATAAAATAAATAATAA
Found at i:87796281 original size:31 final size:32
Alignment explanation
Indices: 87796201--87796281 Score: 100
Period size: 31 Copynumber: 2.6 Consensus size: 32
87796191 AAAATTCATT
87796201 ATCAAAT-TAAAATAAA-AATAAAAATATAGA
1 ATCAAATATAAAATAAATAATAAAAATATAGA
87796231 ATCAAA-ACTAAAATAAATAATAAAAAT-TA-A
1 ATCAAATA-TAAAATAAATAATAAAAATATAGA
*
87796261 ATTAAATATAAATATAAATAA
1 ATCAAATATAAA-ATAAATAA
87796282 AATACAGCAA
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
30 16 0.36
31 20 0.44
32 9 0.20
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (32 bp):
ATCAAATATAAAATAAATAATAAAAATATAGA
Found at i:87801327 original size:40 final size:39
Alignment explanation
Indices: 87801295--87801368 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 39
87801285 AAAACGGCGT
87801295 TGTT-TTG-TAATTTTTTGTGGCGTTTTTTATAAATACAC
1 TGTTATTGTTAATTTTTTGTGGCGTTTTTTATAAA-ACAC
* *
87801333 TGTTATTGTTTATTTTTTGTGGCGTTTTTTACAAAA
1 TGTTATTGTTAATTTTTTGTGGCGTTTTTTATAAAA
87801369 AAAAAGTCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
38 4 0.12
39 4 0.12
40 24 0.75
ACGTcount: A:0.20, C:0.07, G:0.16, T:0.57
Consensus pattern (39 bp):
TGTTATTGTTAATTTTTTGTGGCGTTTTTTATAAAACAC
Found at i:87801510 original size:17 final size:18
Alignment explanation
Indices: 87801477--87801510 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
87801467 TATCTCTTAA
87801477 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
87801495 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
87801511 AAAACAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:87801952 original size:14 final size:14
Alignment explanation
Indices: 87801933--87801985 Score: 88
Period size: 14 Copynumber: 3.8 Consensus size: 14
87801923 TGTAAAACAA
87801933 AAACCAAAAACTCT
1 AAACCAAAAACTCT
* *
87801947 AAACCATAAACCCT
1 AAACCAAAAACTCT
87801961 AAACCAAAAACTCT
1 AAACCAAAAACTCT
87801975 AAACCAAAAAC
1 AAACCAAAAAC
87801986 AATAAACATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.58, C:0.30, G:0.00, T:0.11
Consensus pattern (14 bp):
AAACCAAAAACTCT
Found at i:87801991 original size:14 final size:14
Alignment explanation
Indices: 87801933--87801992 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
87801923 TGTAAAACAA
*
87801933 AAACCAAAAACTCT
1 AAACCAAAAACACT
* *
87801947 AAACCATAAACCCT
1 AAACCAAAAACACT
*
87801961 AAACCAAAAACTCT
1 AAACCAAAAACACT
*
87801975 AAACCAAAAACAAT
1 AAACCAAAAACACT
87801989 AAAC
1 AAAC
87801993 ATTATCTCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 40 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (14 bp):
AAACCAAAAACACT
Found at i:87801991 original size:28 final size:28
Alignment explanation
Indices: 87801926--87801992 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
87801916 TACTAACTGT
87801926 AAAACAA-AAACCAAAAACTCTAAACCA
1 AAAACAATAAACCAAAAACTCTAAACCA
* **
87801953 TAAACCCTAAACCAAAAACTCTAAACCA
1 AAAACAATAAACCAAAAACTCTAAACCA
87801981 AAAACAATAAAC
1 AAAACAATAAAC
87801993 ATTATCTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 4 0.12
28 29 0.88
ACGTcount: A:0.63, C:0.27, G:0.00, T:0.10
Consensus pattern (28 bp):
AAAACAATAAACCAAAAACTCTAAACCA
Found at i:87802622 original size:14 final size:15
Alignment explanation
Indices: 87802597--87802634 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
87802587 TACCATATTT
87802597 ACCTCTAAACCCCAA
1 ACCTCTAAACCCCAA
87802612 ACCTC-AAACCCCAA
1 ACCTCTAAACCCCAA
87802626 ACC-CTAAAC
1 ACCTCTAAAC
87802635 TCTAGGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.05
14 16 0.73
15 5 0.23
ACGTcount: A:0.42, C:0.47, G:0.00, T:0.11
Consensus pattern (15 bp):
ACCTCTAAACCCCAA
Found at i:87802756 original size:40 final size:41
Alignment explanation
Indices: 87802688--87802913 Score: 296
Period size: 41 Copynumber: 5.6 Consensus size: 41
87802678 CTTTTTTTGT
* *
87802688 GGCGTTTTTTAAAAAGCGCCGCTAAAAGCTAGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGC
87802729 GGCGTTTTTCAAAAAGCGCCGCT-AAAGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGC
*** *
87802769 GATATTTTTCAAAAAACGCCGCTAAAAGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGC
* * * * *
87802810 TGTGTTTCTCCAAAAGCGCCGCTAAAACCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGC
* * *
87802851 GGCGTTTTTCCAAAAGCG-CGCTAAAACCTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGC
*
87802891 GGCGTTTTTC-CAAAGCGCCGCTA
1 GGCGTTTTTCAAAAAGCGCCGCTA
87802914 TTGTTCAGTT
Statistics
Matches: 165, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
39 6 0.04
40 71 0.43
41 88 0.53
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (41 bp):
GGCGTTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGC
Found at i:87802789 original size:81 final size:80
Alignment explanation
Indices: 87802692--87802913 Score: 284
Period size: 81 Copynumber: 2.8 Consensus size: 80
87802682 TTTTGTGGCG
* * *
87802692 TTTTTTAAAAAGCGCCGCTAAAAGCTAGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAAAGC
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTTTTC-AAAAGCGCCGCTAAACC
*
87802757 TCGATCTATAGCGATA
65 TCGATCTATAGCGACA
* * * *
87802773 TTTTTCAAAAAACGCCGCTAAAAGCTCGATCTATAGCTGTGTTTCTCCAAAAGCGCCGCTAAAAC
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTT-TTCAAAAGCGCCGCT-AAAC
* *
87802838 CTCGATCTATAGCGGCG
64 CTCGATCTATAGCGACA
* * * *
87802855 TTTTTCCAAAAGCG-CGCTAAAACCTCGACCTATAGCGGCGTTTTTCCAAAGCGCCGCTA
1 TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTTTTCAAAAGCGCCGCTA
87802914 TTGTTCAGTT
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 13 0.11
81 76 0.63
82 31 0.26
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (80 bp):
TTTTTCAAAAAGCGCCGCTAAAAGCTCGATCTATAGCGGCGTTTTTCAAAAGCGCCGCTAAACCT
CGATCTATAGCGACA
Found at i:87802963 original size:41 final size:41
Alignment explanation
Indices: 87802910--87803015 Score: 131
Period size: 41 Copynumber: 2.6 Consensus size: 41
87802900 CCAAAGCGCC
* * * * *
87802910 GCTATTGTTCAGTTTTTAGCGTCGTTTGGACCAAAAACGCT
1 GCTATTGCTCAGTTTTTAACGGCGCTTAGACCAAAAACGCT
*
87802951 GCTATTGCTCAGTTTATAACGGCGCTTAGACCAAAAACGCT
1 GCTATTGCTCAGTTTTTAACGGCGCTTAGACCAAAAACGCT
* * *
87802992 GCTATTACTTAGTTTTTTACGGCG
1 GCTATTGCTCAGTTTTTAACGGCG
87803016 TTTTTTTGCA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (41 bp):
GCTATTGCTCAGTTTTTAACGGCGCTTAGACCAAAAACGCT
Found at i:87803673 original size:22 final size:23
Alignment explanation
Indices: 87803623--87803676 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
87803613 ATGGATTTTG
* *
87803623 ATTTTAATGAATTTAATAAATGA
1 ATTTTAATAAATTTAAGAAATGA
*
87803646 A-GTTAATAAATTTAAGAAAT-A
1 ATTTTAATAAATTTAAGAAATGA
87803667 ATTTTAATAA
1 ATTTTAATAA
87803677 TTTTTTTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.08
22 23 0.88
23 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (23 bp):
ATTTTAATAAATTTAAGAAATGA
Found at i:87807935 original size:39 final size:39
Alignment explanation
Indices: 87807876--87807951 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
87807866 TCCGCAACGT
* *
87807876 ATGCCTCAATCATCTGTTGATAAACCATGAGGGTTTCGG
1 ATGCCTCAACCATCTATTGATAAACCATGAGGGTTTCGG
87807915 ATGCCTCAACCATCTATTGATAAACCATGAGGGTTTC
1 ATGCCTCAACCATCTATTGATAAACCATGAGGGTTTC
87807952 AGACTTTTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (39 bp):
ATGCCTCAACCATCTATTGATAAACCATGAGGGTTTCGG
Found at i:87813588 original size:21 final size:20
Alignment explanation
Indices: 87813550--87813588 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
87813540 ATTGTAACCT
* *
87813550 TTATTTTTTAATTTTTTATA
1 TTATTTTGTAATTATTTATA
87813570 TTATTTTCGTAATTATTTA
1 TTATTTT-GTAATTATTTA
87813589 ATTTTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (20 bp):
TTATTTTGTAATTATTTATA
Found at i:87813649 original size:19 final size:20
Alignment explanation
Indices: 87813618--87813666 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
87813608 TATCTTAACC
*
87813618 ATTAAATCTAAAAA-AAT-T
1 ATTAAAACTAAAAATAATAT
87813636 ATTACAAACTAAAAATAATAT
1 ATTA-AAACTAAAAATAATAT
87813657 ATTAAAACTA
1 ATTAAAACTA
87813667 TCTTAATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 4 0.15
19 9 0.33
20 9 0.33
21 5 0.19
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (20 bp):
ATTAAAACTAAAAATAATAT
Found at i:87813738 original size:25 final size:25
Alignment explanation
Indices: 87813710--87813761 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
87813700 TAATATTTAC
87813710 AAAT-AAAAA-TATAATCTTAAATATT
1 AAATCAAAAATTA-AATC-TAAATATT
87813735 AAATCAAAAATTAAATCTAAATATT
1 AAATCAAAAATTAAATCTAAATATT
87813760 AA
1 AA
87813762 CAATAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 14 0.56
26 9 0.36
27 2 0.08
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.33
Consensus pattern (25 bp):
AAATCAAAAATTAAATCTAAATATT
Found at i:87813775 original size:25 final size:24
Alignment explanation
Indices: 87813714--87813787 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 24
87813704 ATTTACAAAT
87813714 AAAAA-TATAATCTTAAATATTAAATC
1 AAAAATTA-AATC-TAAATATT-AATC
87813740 AAAAATTAAATCTAAATATTAA-C
1 AAAAATTAAATCTAAATATTAATC
* * *
87813763 AATAATTTAAAATATAAACATTAAT
1 AA-AAATT-AAATCTAAATATTAAT
87813788 ATATTATGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
23 3 0.07
24 6 0.15
25 21 0.51
26 9 0.22
27 2 0.05
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (24 bp):
AAAAATTAAATCTAAATATTAATC
Found at i:87816681 original size:19 final size:19
Alignment explanation
Indices: 87816654--87816700 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
87816644 GTTATTATTT
* *
87816654 TTTATTAAATAAAATAATC
1 TTTACTAAATAAAATAATA
* *
87816673 TTTACTAAATGAAATTATA
1 TTTACTAAATAAAATAATA
87816692 TTT-CTAAAT
1 TTTACTAAAT
87816701 TTAATTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (19 bp):
TTTACTAAATAAAATAATA
Found at i:87817962 original size:16 final size:15
Alignment explanation
Indices: 87817943--87817981 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
87817933 TCTAAATACA
87817943 AGTTATTCCAAACAAT
1 AGTTATTCCAAAC-AT
*
87817959 AGTTATTCTAAACAT
1 AGTTATTCCAAACAT
*
87817974 AGCTATTC
1 AGTTATTC
87817982 TTGAAATGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (15 bp):
AGTTATTCCAAACAT
Found at i:87819219 original size:197 final size:197
Alignment explanation
Indices: 87818884--87819265 Score: 589
Period size: 197 Copynumber: 1.9 Consensus size: 197
87818874 AATATTTCTT
*
87818884 GAATAAGCTTTTGTAGTGTTTCCTTTAAAAAATGAGAACAACTAACAATAGCATTCCTTAAAAAT
1 GAATAAGCTTTTATAGTGTTTCCTTTAAAAAATGAGAACAACTAACAATAGCATTCCTTAAAAAT
* **
87818949 TTTGGGAACAACTTAGCATAGTGTTTCTTGAAAAAAAAAAACTTGTATTTATTGAAATATATATA
66 TTTGGGAACAACTTAGCATAGTGTTTCTTG-AAAAAAAAAACTCGTATTTATAAAAATATATATA
87819014 CATTAATGACAACATACTTTAAG-CTT-TCCTC-CTCTTTCTCTCTCTTTAAAACACAAAAGTGT
130 CATTAATGACAACATACTTTAAGACTTATCCTCGCTCTTTCT-T-TCTTTAAAACACAAAAGTGT
87819076 TTCCA
193 TTCCA
87819081 GAATAAGCTTTTATAGTGTTTCC-TTAAAAAA-GTAGGAACAACTAACAATAGCATTCACTTAAA
1 GAATAAGCTTTTATAGTGTTTCCTTTAAAAAATG-A-GAACAACTAACAATAGCATTC-CTTAAA
87819144 AA-TTTGGGAACAACTTAGCATAGTGTTTCTTG-AAAAAAAAACTCGTATTTATCAAAATATATA
63 AATTTTGGGAACAACTTAGCATAGTGTTTCTTGAAAAAAAAAACTCGTATTTAT-AAAA-ATATA
*
87819207 TATACATTAATGACAACATACTTTAAGATTTCATCCTCGCTCTTTCTTTCTTTAAAACA
126 TATACATTAATGACAACATACTTTAAGACTT-ATCCTCGCTCTTTCTTTCTTTAAAACA
87819266 GAATGACAAC
Statistics
Matches: 171, Mismatches: 5, Indels: 16
0.89 0.03 0.08
Matches are distributed among these distances:
195 20 0.12
196 11 0.06
197 105 0.61
198 10 0.06
199 11 0.06
200 6 0.04
201 8 0.05
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.35
Consensus pattern (197 bp):
GAATAAGCTTTTATAGTGTTTCCTTTAAAAAATGAGAACAACTAACAATAGCATTCCTTAAAAAT
TTTGGGAACAACTTAGCATAGTGTTTCTTGAAAAAAAAAACTCGTATTTATAAAAATATATATAC
ATTAATGACAACATACTTTAAGACTTATCCTCGCTCTTTCTTTCTTTAAAACACAAAAGTGTTTC
CA
Found at i:87819279 original size:3 final size:3
Alignment explanation
Indices: 87819271--87819295 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
87819261 AAACAGAATG
87819271 ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA A
87819296 ATAAATGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:87820579 original size:24 final size:24
Alignment explanation
Indices: 87820547--87820593 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
87820537 TACAATTAAT
*
87820547 TTCTCGTTTTAGGAAGAAATATAC
1 TTCTCGTTTTAGGAAAAAATATAC
87820571 TTCTCGTTTTAGGAAAAAATATA
1 TTCTCGTTTTAGGAAAAAATATA
87820594 TGTATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (24 bp):
TTCTCGTTTTAGGAAAAAATATAC
Found at i:87820765 original size:66 final size:64
Alignment explanation
Indices: 87820688--87820854 Score: 160
Period size: 66 Copynumber: 2.5 Consensus size: 64
87820678 GTGGCGTTTG
* * *
87820688 AGACCATAACAATCGACTTATCTTTTAAGAATAACACGTATTTGAGAGT-AACAGAAA-TGGTGC
1 AGACCACAACAATCGACTT-TCTTTT-AGAATAACACGAATATGAGAGTGAA-A-AAAGTGGTG-
87820751 T-TA
61 TATA
* * **
87820754 AGACCACAACAATTGAATTCTCTTTTGAGAATAACTTGAATATGAGAGTGAAAAAAGTGGTGTAT
1 AGACCACAACAATCGACTT-TCTTTT-AGAATAACACGAATATGAGAGTGAAAAAAGTGGTGTAT
87820819 A
64 A
*
87820820 AGACCACAACAATCAACTTTCCTCTTTAGAATAAC
1 AGACCACAACAATCGACTTT-CT-TTTAGAATAAC
87820855 TTGTAAGAGA
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
65 5 0.06
66 74 0.88
67 5 0.06
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (64 bp):
AGACCACAACAATCGACTTTCTTTTAGAATAACACGAATATGAGAGTGAAAAAAGTGGTGTATA
Found at i:87823732 original size:40 final size:39
Alignment explanation
Indices: 87823641--87823732 Score: 89
Period size: 40 Copynumber: 2.4 Consensus size: 39
87823631 TCAACTCCGA
* *
87823641 CCAACCCAACACACCATGTGGGGATAAAATTGACCTACT
1 CCAACCCAACACACCATATGGGGATAAAATCGACCTACT
* ** * *
87823680 -CATCCCTGCACACCGTATATGGGGATATAATCGACCTATT
1 CCAACCCAACACACC--ATATGGGGATAAAATCGACCTACT
87823720 CCAACCC-ACACAC
1 CCAACCCAACACAC
87823733 GATAAGGTAC
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
38 11 0.27
40 25 0.61
41 5 0.12
ACGTcount: A:0.33, C:0.34, G:0.14, T:0.20
Consensus pattern (39 bp):
CCAACCCAACACACCATATGGGGATAAAATCGACCTACT
Found at i:87826997 original size:53 final size:53
Alignment explanation
Indices: 87826916--87827066 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
87826906 CTTACACGGT
* *
87826916 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
87826971 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
87827024 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
87827067 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:87834031 original size:53 final size:53
Alignment explanation
Indices: 87833950--87834100 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
87833940 CTTACACGGT
* *
87833950 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
87834005 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
87834058 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
87834101 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:87843158 original size:28 final size:28
Alignment explanation
Indices: 87843118--87843171 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
87843108 TACTTAGACT
87843118 ATATTTAAATTCCATCATAAAACTAATC
1 ATATTTAAATTCCATCATAAAACTAATC
87843146 ATATTTAAATTCCATCATAAAACTAA
1 ATATTTAAATTCCATCATAAAACTAA
87843172 CCAAGAAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (28 bp):
ATATTTAAATTCCATCATAAAACTAATC
Found at i:87845693 original size:20 final size:20
Alignment explanation
Indices: 87845650--87845694 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
87845640 TCTCATTTTT
* *
87845650 TATTTTTTTGTTTTAATATT
1 TATTTTTATGTTTTAATATG
87845670 TATTTTTATGTTTTTAA-ATG
1 TATTTTTATG-TTTTAATATG
87845690 TATTT
1 TATTT
87845695 GATTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (20 bp):
TATTTTTATGTTTTAATATG
Found at i:87845699 original size:25 final size:25
Alignment explanation
Indices: 87845666--87845724 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
87845656 TTTGTTTTAA
* *
87845666 TATTTATTT-TTATGTTTTTAAATG
1 TATTTATTTATTATATTTTAAAATG
87845690 TATTTGATTTATTATATTTTAAAAT-
1 TATTT-ATTTATTATATTTTAAAATG
*
87845715 TTTTTATTTA
1 TATTTATTTA
87845725 ATAAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 10 0.33
25 8 0.27
26 12 0.40
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (25 bp):
TATTTATTTATTATATTTTAAAATG
Found at i:87847864 original size:6 final size:6
Alignment explanation
Indices: 87847853--87847885 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
87847843 AAAGGAAAAA
*
87847853 GATTGT GTTTGT GATTGT GATTGT GATTGT GAT
1 GATTGT GATTGT GATTGT GATTGT GATTGT GAT
87847886 CATGAAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.52
Consensus pattern (6 bp):
GATTGT
Found at i:87856712 original size:18 final size:20
Alignment explanation
Indices: 87856686--87856722 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
87856676 CAAACACCCC
87856686 ATGTGC-TTTCT-TCTTTTT
1 ATGTGCTTTTCTCTCTTTTT
*
87856704 ATGTTCTTTTCTCTCTTTT
1 ATGTGCTTTTCTCTCTTTT
87856723 ATAACGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 5 0.31
20 6 0.38
ACGTcount: A:0.05, C:0.19, G:0.08, T:0.68
Consensus pattern (20 bp):
ATGTGCTTTTCTCTCTTTTT
Found at i:87856887 original size:10 final size:10
Alignment explanation
Indices: 87856874--87856898 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
87856864 GTGTTATTTA
87856874 TAAATTTATT
1 TAAATTTATT
87856884 TAAATTTATT
1 TAAATTTATT
87856894 TAAAT
1 TAAAT
87856899 ATAATTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TAAATTTATT
Found at i:87857448 original size:23 final size:23
Alignment explanation
Indices: 87857401--87857449 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
87857391 ATTGCAATTT
**
87857401 AAAAATATAATTTAATTAGTCAA
1 AAAAATATAATTTAATTAGAAAA
*
87857424 AAAAATATAATTTAATTTGAAAA
1 AAAAATATAATTTAATTAGAAAA
87857447 AAA
1 AAA
87857450 GTTATTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAAATATAATTTAATTAGAAAA
Found at i:87862110 original size:9 final size:9
Alignment explanation
Indices: 87862096--87862123 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
87862086 GGAAGAAAGG
87862096 GCAGTTGAT
1 GCAGTTGAT
87862105 GCAGTTGAT
1 GCAGTTGAT
87862114 GCAGTTGAT
1 GCAGTTGAT
87862123 G
1 G
87862124 GATCAGAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.36, T:0.32
Consensus pattern (9 bp):
GCAGTTGAT
Found at i:87863663 original size:26 final size:26
Alignment explanation
Indices: 87863627--87863736 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
87863617 TGATACAAAT
87863627 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
87863653 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
87863679 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
87863705 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
87863731 TGATAA
1 TGATAA
87863737 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:87870241 original size:18 final size:18
Alignment explanation
Indices: 87870218--87870259 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
87870208 AAAACAAAAC
*
87870218 TTGAGAAAATTTAGAGAA
1 TTGAGAAAATTGAGAGAA
*
87870236 TTGAGAAAATTGAGAGAG
1 TTGAGAAAATTGAGAGAA
87870254 TTGAGA
1 TTGAGA
87870260 GTTTAGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (18 bp):
TTGAGAAAATTGAGAGAA
Found at i:87870257 original size:9 final size:9
Alignment explanation
Indices: 87870218--87870279 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 9
87870208 AAAACAAAAC
*
87870218 TTGAGAAAA
1 TTGAGAGAA
*
87870227 TTTAGAGAA
1 TTGAGAGAA
*
87870236 TTGAGAAAA
1 TTGAGAGAA
*
87870245 TTGAGAGAG
1 TTGAGAGAA
*
87870254 TTGAGAG-T
1 TTGAGAGAA
*
87870262 TTAGAAAGAA
1 TT-GAGAGAA
87870272 TTGAGAGA
1 TTGAGAGA
87870280 GTTGGATTTG
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
8 2 0.05
9 37 0.90
10 2 0.05
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:87870260 original size:27 final size:27
Alignment explanation
Indices: 87870231--87870291 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
87870221 AGAAAATTTA
*
87870231 GAGAATTGAG-AA-AATTGAGAGAGTT
1 GAGAGTTGAGAAAGAATTGAGAGAGTT
*
87870256 GAGAGTTTAGAAAGAATTGAGAGAGTT
1 GAGAGTTGAGAAAGAATTGAGAGAGTT
*
87870283 G-GATTTGAG
1 GAGAGTTGAG
87870292 TGAAAAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 8 0.27
26 8 0.27
27 14 0.47
ACGTcount: A:0.39, C:0.00, G:0.34, T:0.26
Consensus pattern (27 bp):
GAGAGTTGAGAAAGAATTGAGAGAGTT
Found at i:87873387 original size:9 final size:9
Alignment explanation
Indices: 87873373--87873403 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
87873363 GATTAAGTAA
87873373 AATTAAATT
1 AATTAAATT
87873382 AATTAAATT
1 AATTAAATT
87873391 AATTAAAATT
1 AATT-AAATT
87873401 AAT
1 AAT
87873404 ATGATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATTAAATT
Found at i:87873872 original size:25 final size:26
Alignment explanation
Indices: 87873818--87873878 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
87873808 TAAATTAAAT
*
87873818 TTAATACTT-ATATTAATAGTATTTTA
1 TTAATA-TTAATATTAATAGTATTATA
*
87873844 TTAAT-TTAATATTAA-AGTGATTATC
1 TTAATATTAATATTAATAGT-ATTATA
87873869 TTAATATTAA
1 TTAATATTAA
87873879 ATTTAATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
24 5 0.17
25 16 0.53
26 9 0.30
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (26 bp):
TTAATATTAATATTAATAGTATTATA
Found at i:87874302 original size:13 final size:12
Alignment explanation
Indices: 87874281--87874317 Score: 65
Period size: 12 Copynumber: 3.0 Consensus size: 12
87874271 ATCACAACCA
87874281 AAATTTTATTTT
1 AAATTTTATTTT
87874293 AAATTTTTATTTT
1 AAA-TTTTATTTT
87874306 AAATTTTATTTT
1 AAATTTTATTTT
87874318 TTCTAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
AAATTTTATTTT
Found at i:87874318 original size:13 final size:13
Alignment explanation
Indices: 87874281--87874318 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
87874271 ATCACAACCA
87874281 AAATTTTA-TTTT
1 AAATTTTATTTTT
87874293 AAATTTT-TATTTT
1 AAATTTTAT-TTTT
87874306 AAATTTTATTTTT
1 AAATTTTATTTTT
87874319 TCTAAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 7 0.30
13 15 0.65
14 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
AAATTTTATTTTT
Found at i:87874330 original size:15 final size:14
Alignment explanation
Indices: 87874289--87874332 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
87874279 CAAAATTTTA
*
87874289 TTTTAAATTT-TTA
1 TTTTAAATTTATTT
87874302 TTTTAAATTTTATTT
1 TTTTAAA-TTTATTT
87874317 TTTCTAAATTTATTT
1 TTT-TAAATTTATTT
87874332 T
1 T
87874333 CCCTTATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 7 0.26
14 3 0.11
15 13 0.48
16 4 0.15
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTAAATTTATTT
Found at i:87876664 original size:16 final size:16
Alignment explanation
Indices: 87876643--87876682 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
87876633 ACTATGGTAA
* *
87876643 TAATTATATTATTTTG
1 TAATTACATTATCTTG
87876659 TAATTACATTATCTTG
1 TAATTACATTATCTTG
87876675 TAATTACA
1 TAATTACA
87876683 AAGAATTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (16 bp):
TAATTACATTATCTTG
Found at i:87877052 original size:13 final size:13
Alignment explanation
Indices: 87877036--87877060 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87877026 ATATTTTTTA
87877036 AATAAATTTTAAT
1 AATAAATTTTAAT
87877049 AATAAATTTTAA
1 AATAAATTTTAA
87877061 AGTTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAAATTTTAAT
Found at i:87878858 original size:20 final size:20
Alignment explanation
Indices: 87878825--87878877 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
87878815 ACTCTAGAAT
*
87878825 TTTTCTCTTGTTTTCCTCCTTC
1 TTTTCT-TT-TTTTACTCCTTC
**
87878847 TTTTCTTTTTTTACTTTTTC
1 TTTTCTTTTTTTACTCCTTC
87878867 TTCTTCTTTTT
1 TT-TTCTTTTT
87878878 CTTCTTCTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 11 0.41
21 10 0.37
22 6 0.22
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTCTTTTTTTACTCCTTC
Found at i:87878870 original size:3 final size:3
Alignment explanation
Indices: 87878843--87878909 Score: 57
Period size: 3 Copynumber: 22.0 Consensus size: 3
87878833 TGTTTTCCTC
* * *
87878843 CTT CTT -TT CTT -TT TTT ACTT TTT CTT CTT CTT TTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT -CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
87878887 CTT CTAT GCTT CTT CTT TTT CTT
1 CTT CT-T -CTT CTT CTT CTT CTT
87878910 TTATTCCCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
2 4 0.08
3 42 0.81
4 4 0.08
5 2 0.04
ACGTcount: A:0.03, C:0.24, G:0.01, T:0.72
Consensus pattern (3 bp):
CTT
Found at i:87878870 original size:18 final size:18
Alignment explanation
Indices: 87878843--87878911 Score: 72
Period size: 17 Copynumber: 3.9 Consensus size: 18
87878833 TGTTTTCCTC
87878843 CTTCTT-TTCTT-TTTTT
1 CTTCTTCTTCTTCTTTTT
*
87878859 ACTTTTTCTTCTTCTTTTT
1 -CTTCTTCTTCTTCTTTTT
* *
87878878 CTTCTTCTTCTTC-TATG
1 CTTCTTCTTCTTCTTTTT
*
87878895 CTTCTTCTTTTTCTTTT
1 CTTCTTCTTCTTCTTTT
87878912 ATTCCCCAGC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
17 19 0.44
18 19 0.44
19 5 0.12
ACGTcount: A:0.03, C:0.23, G:0.01, T:0.72
Consensus pattern (18 bp):
CTTCTTCTTCTTCTTTTT
Found at i:87892728 original size:21 final size:21
Alignment explanation
Indices: 87892704--87892755 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
87892694 AAATTTTTTT
**
87892704 ATTTATAATTTGATATAATAA
1 ATTTATAATGAGATATAATAA
* *
87892725 ATTTTTAAGGAGATATAATAA
1 ATTTATAATGAGATATAATAA
87892746 ATTTAATAAT
1 ATTT-ATAAT
87892756 ATATCGTTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (21 bp):
ATTTATAATGAGATATAATAA
Found at i:87904079 original size:46 final size:46
Alignment explanation
Indices: 87904026--87904171 Score: 238
Period size: 46 Copynumber: 3.2 Consensus size: 46
87904016 GCTCTCTTAA
* *
87904026 ATGAAATGTGTAAAACCATGGTTGAAAGCTACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
87904072 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
87904118 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
87904164 ATGAAATG
1 ATGAAATG
87904172 AGGCAACATA
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 93 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:87904182 original size:66 final size:66
Alignment explanation
Indices: 87904107--87904238 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
87904097 AAGATACCAT
87904107 GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATG
1 GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATG
87904172 A
66 A
87904173 GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATG
1 GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATG
87904238 A
66 A
87904239 ATAAGACCAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (66 bp):
GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATG
A
Found at i:87904236 original size:46 final size:46
Alignment explanation
Indices: 87904184--87904442 Score: 333
Period size: 46 Copynumber: 5.6 Consensus size: 46
87904174 GCAACATAAT
** *
87904184 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
87904230 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* ** * *
87904276 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGAAAACATAAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
** * * *
87904322 GGGAAATGAACAAGACCATGGTTGAAAGATACTATGGCAGCGTG-C
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
**
87904367 AATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATATGAC
1 -ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
* *
87904414 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAATAAGACCATGGTTGAAAGA
87904443 CACTATGACA
Statistics
Matches: 183, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
45 2 0.01
46 180 0.98
47 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
Found at i:87904258 original size:112 final size:112
Alignment explanation
Indices: 87904061--87904281 Score: 370
Period size: 112 Copynumber: 2.0 Consensus size: 112
87904051 AAGCTACCAT
* *
87904061 GGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAATATGAAATG
1 GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATG
** *
87904126 TGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGA
66 AATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGA
* * *
87904173 GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATG
1 GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATG
87904238 AATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
66 AATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
87904282 AGAATAAGAC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
112 101 1.00
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (112 bp):
GGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATG
AATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGA
Found at i:87904328 original size:158 final size:158
Alignment explanation
Indices: 87904026--87904330 Score: 430
Period size: 158 Copynumber: 1.9 Consensus size: 158
87904016 GCTCTCTTAA
* * **
87904026 ATGAAATGTGTAAAACCATGGTTGAAAGCTACCATGGCAACATGATATGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCAT
* * ** **
87904091 GGTTGAAAGATACCATGGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGGCAACATAACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGAA
* * * *
87904156 AGCGTGACATGAAATGAGGCAACATAAT
131 AACATAACAGGAAATGAGGCAACATAAT
* * *
87904184 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCAT
1 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCAT
* *
87904249 GGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGAA
66 GGTTGAAAGATACCATGGCAACATAACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGAA
*
87904314 AACATAACGGGAAATGA
131 AACATAACAGGAAATGA
87904331 ACAAGACCAT
Statistics
Matches: 127, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
158 127 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (158 bp):
ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATAACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGAA
AACATAACAGGAAATGAGGCAACATAAT
Found at i:87907240 original size:50 final size:50
Alignment explanation
Indices: 87907184--87907292 Score: 182
Period size: 50 Copynumber: 2.2 Consensus size: 50
87907174 TATACTTTTA
* * *
87907184 ATGTTTGGTAATAGACCTATAATGAATGAATGGGATTGAAATTGTTATGT
1 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
87907234 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
1 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
*
87907284 ACGTTTGGA
1 ATGTTTGGA
87907293 TTGGTTTTGC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.35
Consensus pattern (50 bp):
ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
Found at i:87908837 original size:45 final size:45
Alignment explanation
Indices: 87908786--87908871 Score: 172
Period size: 45 Copynumber: 1.9 Consensus size: 45
87908776 GGACTAAATC
87908786 GTGTAAAATGAAAAAGTTGCATTCTACTTGTTAAAGGTGTTAAAG
1 GTGTAAAATGAAAAAGTTGCATTCTACTTGTTAAAGGTGTTAAAG
87908831 GTGTAAAATGAAAAAGTTGCATTCTACTTGTTAAAGGTGTT
1 GTGTAAAATGAAAAAGTTGCATTCTACTTGTTAAAGGTGTT
87908872 TAATTTCTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.35
Consensus pattern (45 bp):
GTGTAAAATGAAAAAGTTGCATTCTACTTGTTAAAGGTGTTAAAG
Found at i:87916916 original size:12 final size:13
Alignment explanation
Indices: 87916899--87916928 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
87916889 TAGCCCAAAT
87916899 AATTT-GTACCTC
1 AATTTGGTACCTC
87916911 AATTTGGTACCTC
1 AATTTGGTACCTC
87916924 AATTT
1 AATTT
87916929 TTTTTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (13 bp):
AATTTGGTACCTC
Found at i:87920460 original size:13 final size:13
Alignment explanation
Indices: 87920442--87920469 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
87920432 CACCTACAAC
87920442 AACAATAACCATA
1 AACAATAACCATA
87920455 AACAATAACCATA
1 AACAATAACCATA
87920468 AA
1 AA
87920470 GTAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.21, G:0.00, T:0.14
Consensus pattern (13 bp):
AACAATAACCATA
Found at i:87921117 original size:19 final size:19
Alignment explanation
Indices: 87921093--87921190 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
87921083 AATCTTTAAG
87921093 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
87921112 GATATGCAATCTTAGACAT
1 GATATGCAATCTTAGATAT
87921131 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
87921148 GATATGCAATCTCAGATAT
1 GATATGCAATCTTAGATAT
87921167 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
87921188 GAT
1 GAT
87921191 CTTATAATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.23
19 46 0.65
21 9 0.13
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:87921124 original size:36 final size:37
Alignment explanation
Indices: 87921099--87921190 Score: 116
Period size: 36 Copynumber: 2.4 Consensus size: 37
87921089 TAAGGATATG
87921099 CAATCTTAGATATGATATGCAATC-TTAGACATGATA
1 CAATCTTAGATATGATATGCAATCTTTAGACATGATA
* *
87921135 CAATCTTAGATATGATATGCAATC-TCAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTTAGACATGATA
87921171 TGCAATCTTGAAGATATGAT
1 --CAATCTT--AGATATGAT
87921191 CTTATAATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 34 0.68
38 7 0.14
40 9 0.18
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTTAGACATGATA
Found at i:87926368 original size:1 final size:1
Alignment explanation
Indices: 87926362--87926455 Score: 62
Period size: 1 Copynumber: 94.0 Consensus size: 1
87926352 CTTTTATTTC
* * * * * * * * * *
87926362 AAAAAAAAGAAAAAAATAAAAAAATAAAAGAAAAAGAGAAAAAAATAAAAAGAAAAAAGAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
87926427 AGAAAAAAGAAAAAAGAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
87926456 TGGAGAAGCC
Statistics
Matches: 65, Mismatches: 28, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (1 bp):
A
Found at i:87926376 original size:7 final size:7
Alignment explanation
Indices: 87926364--87926455 Score: 118
Period size: 7 Copynumber: 12.9 Consensus size: 7
87926354 TTTATTTCAA
87926364 AAAAAAG
1 AAAAAAG
87926371 AAAAAA-
1 AAAAAAG
87926377 ATAAAAA-
1 A-AAAAAG
87926384 AATAAAAG
1 AA-AAAAG
87926392 AAAAAGAG
1 AAAAA-AG
87926400 AAAAAA-
1 AAAAAAG
87926406 ATAAAAAG
1 A-AAAAAG
87926414 AAAAAAG
1 AAAAAAG
87926421 AGAAAAAG
1 A-AAAAAG
87926429 AAAAAAG
1 AAAAAAG
87926436 AAAAAAG
1 AAAAAAG
87926443 AAAAAAG
1 AAAAAAG
87926450 AAAAAA
1 AAAAAA
87926456 TGGAGAAGCC
Statistics
Matches: 78, Mismatches: 0, Indels: 14
0.85 0.00 0.15
Matches are distributed among these distances:
6 3 0.04
7 58 0.74
8 17 0.22
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:87926395 original size:29 final size:29
Alignment explanation
Indices: 87926363--87926455 Score: 136
Period size: 29 Copynumber: 3.2 Consensus size: 29
87926353 TTTTATTTCA
87926363 AAAAAAAGAAAAAAATAAAAA-AATAAAAG
1 AAAAAAAGAAAAAAATAAAAAGAA-AAAAG
*
87926392 AAAAAGAGAAAAAAATAAAAAGAAAAAAG
1 AAAAAAAGAAAAAAATAAAAAGAAAAAAG
*
87926421 AGAAAAAGAAAAAAGA-AAAAAGAAAAAAG
1 AAAAAAAGAAAAAA-ATAAAAAGAAAAAAG
87926450 AAAAAA
1 AAAAAA
87926456 TGGAGAAGCC
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
29 55 0.95
30 3 0.05
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (29 bp):
AAAAAAAGAAAAAAATAAAAAGAAAAAAG
Found at i:87926455 original size:21 final size:21
Alignment explanation
Indices: 87926362--87926455 Score: 113
Period size: 22 Copynumber: 4.4 Consensus size: 21
87926352 CTTTTATTTC
*
87926362 AAAAAAAAGAAAAAA-ATAAA
1 AAAAAAAAGAAAAAAGAGAAA
87926382 AAAATAAAAG-AAAAAGAGAAAA
1 AAAA-AAAAGAAAAAAGAG-AAA
87926404 AAATAAAAAGAAAAAAGAGAAA
1 AAA-AAAAAGAAAAAAGAGAAA
87926426 AAGAAAAAAGAAAAAAGA-AAA
1 AA-AAAAAAGAAAAAAGAGAAA
87926447 AAGAAAAAA
1 AA-AAAAAA
87926456 TGGAGAAGCC
Statistics
Matches: 67, Mismatches: 1, Indels: 11
0.85 0.01 0.14
Matches are distributed among these distances:
20 9 0.13
21 18 0.27
22 30 0.45
23 10 0.15
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (21 bp):
AAAAAAAAGAAAAAAGAGAAA
Found at i:87927519 original size:44 final size:44
Alignment explanation
Indices: 87927458--87928200 Score: 614
Period size: 44 Copynumber: 16.9 Consensus size: 44
87927448 GATCCAAGAT
* * *
87927458 GATTTAGCATCTTTGTATTGGCAGAGAGCAGATCGAAGACAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * *
87927502 GATTTGGCGTCTCTGTATTGGTAGAGAGCAGATCGAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * *
87927546 GATTTGGCATCTCTGTATTTGACGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTA-TTGGCAGAGAGCAGATCGAAG--ATAACA
* * * * *
87927593 GATTCGGCTTCCACGTGT-TT-ACATTGA-AGCA-AGTCTAAGAT----
1 GATTTGGCAT-CTC-TGTATTGGCA--GAGAGCAGA-TCGAAGATAACA
* * *
87927634 GATTTGGCATCTCTGTATTGGCAAAGAGCAAATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
87927678 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* *
87927722 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * * *
87927766 GATTTGGCATTTCTGTATTTGGCGGAGAGTAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTA-TTGGCAGAGAGCAGATCGAAG--ATAACA
* * * ** *
87927813 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT----
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAACA
* *
87927854 GATTTGGCATCTCTGTATTGGCAGATAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * *
87927898 GATTTGGCATCTCTGTATTGGCAAAGAGCAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* * * * *
87927942 GATTTGGCATATCTATATTCGGCGGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAACA
* * * ** *
87927989 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT----
1 GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAACA
* *
87928030 GATTTGGCATCTCTGTATTGGTAGAGAGCAAATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
* *
87928074 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
*
87928118 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ACA
* * * *
87928162 GATTTGGCGTCTCTGTTTTGTCAGAGAGCATATCGAAGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGA
87928201 GAAGAACAAC
Statistics
Matches: 569, Mismatches: 86, Indels: 88
0.77 0.12 0.12
Matches are distributed among these distances:
39 17 0.03
40 45 0.08
41 31 0.05
44 325 0.57
45 59 0.10
46 5 0.01
47 65 0.11
48 14 0.02
49 8 0.01
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACA
Found at i:87927853 original size:220 final size:219
Alignment explanation
Indices: 87927458--87928200 Score: 880
Period size: 220 Copynumber: 3.4 Consensus size: 219
87927448 GATCCAAGAT
* * * *
87927458 GATTTAGCATCTTTGTATTGGCAGAGAGCAGATCGAAGACAACAGATTTGGCGTCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
* * *
87927523 TAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGACGGAGAGCAGATCGAAGACA
66 CAGAGAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTTGACGGAGAG-AGATCGAAGACA
* *
87927588 TAGCTGATTCGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
130 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
* *
87927653 GGCAAAGAGCAAATCGAAGATAGCA
195 GGCAGAGAGCAGATCGAAGATAGCA
87927678 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
*
87927743 CAGAGAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTTGGCGGAGAGTAGATCGAAGACA
66 CAGAGAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTTGACGGAGAG-AGATCGAAGACA
87927808 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
130 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
*
87927873 GGCAGATAGCAGATCGAAGATAGCA
195 GGCAGAGAGCAGATCGAAGATAGCA
* * * * *
87927898 GATTTGGCATCTCTGTATTGGCAAAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATTCG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATT-G
* * * * * * **
87927963 GCGGAGAGCAGATCGAAGACAT-AGCTGATTTGGC-TTCCACGTGTTT-ACGTTGA-AG--C-AA
65 GCAGAGAGCAGATC-AA-AGATGA-CAGATTTGGCATTTC-TGTATTTGACGGAGAGAGATCGAA
* * * * * * * * *
87928021 GTC-TAAGATGATTTGGCAT-CTC-TGTATT-GGTAGAGAGCAAATCGAAGATAACAGATTTGAC
126 GACAT-AGCTGATTTGGCTTCCACGTGT-TTACGTTGA-AGCAAGTCTAAGAT----GATTTGGC
**
87928082 ATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
184 ATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
87928118 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-AGATTTGGCGTCTCTGTTTTG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ACAGATTTGGCATCTCTGTATTG
* * *
87928182 TCAGAGAGCATATCGAAGA
65 GCAGAGAGCAGATCAAAGA
87928201 GAAGAACAAC
Statistics
Matches: 457, Mismatches: 53, Indels: 29
0.85 0.10 0.05
Matches are distributed among these distances:
215 7 0.02
216 17 0.04
217 18 0.04
218 2 0.00
219 12 0.03
220 359 0.79
221 15 0.03
222 10 0.02
223 17 0.04
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (219 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
CAGAGAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTTGACGGAGAGAGATCGAAGACAT
AGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTG
GCAGAGAGCAGATCGAAGATAGCA
Found at i:87927860 original size:176 final size:176
Alignment explanation
Indices: 87927678--87928156 Score: 807
Period size: 176 Copynumber: 2.7 Consensus size: 176
87927668 GAAGATAGCA
87927678 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
* *
87927743 CAGAGAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTTGGCGGAGAGTAGATCGAAGACA
66 CAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTGTATTTGGCGGAGAGCAGATCGAAGACA
87927808 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
131 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
* *
87927854 GATTTGGCATCTCTGTATTGGCAGATAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
* * *
87927919 CAAAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATTCGGCGGAGAGCAGATCGAAGACA
66 CAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTGTATTTGGCGGAGAGCAGATCGAAGACA
87927984 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
131 TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
* * *
87928030 GATTTGGCATCTCTGTATTGGTAGAGAGCAAATCGAAGATAACAGATTTGACATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
* * * * * *
87928095 CAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTA-TTGGCAGAGAGCAGATCGAAGA
66 CAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTGTATTTGGCGGAGAGCAGATCGAAGA
87928157 TAGAAGATTT
Statistics
Matches: 282, Mismatches: 21, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
175 20 0.07
176 262 0.93
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (176 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTGG
CAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTGTATTTGGCGGAGAGCAGATCGAAGACA
TAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
Found at i:87928398 original size:44 final size:44
Alignment explanation
Indices: 87928257--87928531 Score: 164
Period size: 44 Copynumber: 6.2 Consensus size: 44
87928247 TAAGATGATA
* * * *
87928257 TGGCATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATC
1 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGATT
* * * * ** *** **
87928303 TGACATTCCTGTGCTTACAGCGAAGCAGATCAAAGATTTTA-ACA
1 TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAGATT
* *
87928347 TGACATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATT
* * * *
87928391 TGGCATCCCTATGTTTACAGGAAACAGATCGAAGACATAGCAGATC
1 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGATT
* * * * * **
87928437 TGACATTCCTGTGCTTACAGCGAAGCAGATTAAAGATTTCAGCA--
1 TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAG-ATT
* *
87928481 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGTAGATT
1 TGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATT
87928525 TGGCATC
1 TGGCATC
87928532 TCCATATTAG
Statistics
Matches: 172, Mismatches: 46, Indels: 24
0.71 0.19 0.10
Matches are distributed among these distances:
42 3 0.02
43 20 0.12
44 75 0.44
45 8 0.05
46 49 0.28
47 17 0.10
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
TGGCATCCCTGTGTTTACAGGGAACAGATTGAAGATAGCAGATT
Found at i:87928497 original size:134 final size:134
Alignment explanation
Indices: 87928257--87928531 Score: 469
Period size: 134 Copynumber: 2.1 Consensus size: 134
87928247 TAAGATGATA
* * *
87928257 TGGCATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATCTGACATTCCTGTGCTTACA
1 TGGCATCCCTATGTTTACAGGAAACAGATCGAAGACACAGCAGATCTGACATTCCTGTGCTTACA
*
87928322 GCGAAGCAGATCAAAGATTTTAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
66 GCGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
87928387 GATT
131 GATT
*
87928391 TGGCATCCCTATGTTTACAGGAAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
1 TGGCATCCCTATGTTTACAGGAAACAGATCGAAGACACAGCAGATCTGACATTCCTGTGCTTACA
* * * *
87928456 GCGAAGCAGATTAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTA
66 GCGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
87928521 GATT
131 GATT
87928525 TGGCATC
1 TGGCATC
87928532 TCCATATTAG
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
134 132 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (134 bp):
TGGCATCCCTATGTTTACAGGAAACAGATCGAAGACACAGCAGATCTGACATTCCTGTGCTTACA
GCGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
GATT
Found at i:87928721 original size:44 final size:45
Alignment explanation
Indices: 87928595--87928743 Score: 165
Period size: 45 Copynumber: 3.3 Consensus size: 45
87928585 TTTACATCGA
* * * * * *
87928595 AGCAGATCCAAGATGATAGATTTTGCATCTTTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGGG
* * * *
87928640 AGCAAATCGGAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGGG
* * *
87928685 AGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGGG
*
87928729 AGCAGATCAAAGATA
1 AGCAGATCGAAGATA
87928744 GCAGATATCA
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 38 0.43
45 50 0.57
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGGG
Found at i:87929128 original size:19 final size:19
Alignment explanation
Indices: 87929104--87929201 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
87929094 AATCTTTAAG
87929104 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87929123 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
87929142 GATA--CAACCTTAGATAT
1 GATATGCAATCTTAGATAT
*
87929159 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
87929178 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
87929199 GAT
1 GAT
87929202 CTTGTAATCT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.22
19 47 0.65
21 9 0.12
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:87929134 original size:36 final size:35
Alignment explanation
Indices: 87929094--87929201 Score: 94
Period size: 36 Copynumber: 2.9 Consensus size: 35
87929084 ATGGAAATAT
*
87929094 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATAC
*
87929130 AATC-TT-AGATATGATACAACCTTAGATATGATATAC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATAC
*
87929166 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
87929202 CTTGTAATCT
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 26 0.45
37 1 0.02
38 6 0.10
40 10 0.17
41 6 0.10
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATAC
Found at i:87933235 original size:2 final size:2
Alignment explanation
Indices: 87933228--87933354 Score: 63
Period size: 2 Copynumber: 65.0 Consensus size: 2
87933218 TATATTATGC
* *
87933228 AT AT AT AT AT AT AT AT AT -T TT CA- AT A- ACT AT AT -T AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT A-T AT AT AT AT AT AT
* * * *
87933268 AT AT TT CAT AT AT AT AT AT AT AT AT CAT GT AT AT AC AT -T TT A-
1 AT AT AT -AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
* * * *
87933310 AT AG CT CAT AT AT AT -T AT AT AT AT AT AT AT GT AT AT -T AT GT
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87933351 AT AT
1 AT AT
87933355 TTTCTTTTTA
Statistics
Matches: 94, Mismatches: 18, Indels: 26
0.68 0.13 0.19
Matches are distributed among these distances:
1 8 0.09
2 81 0.86
3 5 0.05
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:87933364 original size:55 final size:53
Alignment explanation
Indices: 87933265--87933381 Score: 139
Period size: 53 Copynumber: 2.2 Consensus size: 53
87933255 CTATATTATG
87933265 TATATATTTCATATATATATATATATATCATGTATATACATTTTAATAGCT-CA
1 TATATATTTCATATATATATATATATATCATGTATATACATTTTAATA-CTACA
* * * * *
87933318 TATATATTAT-ATATATATATATGTATATTATGTATATTTTCTTTTTAATACTACG
1 TATATATT-TCATATATATATATATATATCATGTATA--TACATTTTAATACTACA
87933373 TATATATTT
1 TATATATTT
87933382 TATTTCTATT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
53 32 0.58
54 4 0.07
55 19 0.35
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (53 bp):
TATATATTTCATATATATATATATATATCATGTATATACATTTTAATACTACA
Found at i:87933378 original size:25 final size:25
Alignment explanation
Indices: 87933350--87933404 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
87933340 GTATATTATG
* *
87933350 TATATTTTCTTTTTAATACTACGTA
1 TATATTTTATTTCTAATACTACGTA
* *
87933375 TATATTTTATTTCTATTATTACGTA
1 TATATTTTATTTCTAATACTACGTA
87933400 TATAT
1 TATAT
87933405 CTTAATGCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (25 bp):
TATATTTTATTTCTAATACTACGTA
Found at i:87940077 original size:66 final size:66
Alignment explanation
Indices: 87939971--87940100 Score: 206
Period size: 66 Copynumber: 2.0 Consensus size: 66
87939961 ATTCATATAT
* *
87939971 CATTCATAACACATTTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
87940036 A
66 A
* * * *
87940037 CATTCATAACATATCTAGTTAGGAGCATTTGATTCATTTCGATTATAGCATCGTAATCATTTGA
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGA
87940101 ATTAAGCATA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
A
Found at i:87940271 original size:43 final size:45
Alignment explanation
Indices: 87940210--87940317 Score: 157
Period size: 43 Copynumber: 2.4 Consensus size: 45
87940200 GTGATGAGCT
87940210 TTAACCCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAGACC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAGACC
* * * * *
87940253 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTTCAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAGACC
87940298 TTAACCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGG
87940318 AAAACAGATC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 28 0.49
44 1 0.02
45 28 0.49
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.21
Consensus pattern (45 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAAGATTTACAGACC
Found at i:87940416 original size:87 final size:89
Alignment explanation
Indices: 87940251--87940458 Score: 258
Period size: 87 Copynumber: 2.4 Consensus size: 89
87940241 AATTTACAGA
* * *
87940251 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTTCAGATCTTAACCCCCTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGACTTACAGATCTTAACACCCTAAGCAGTA
*
87940316 GGAAAACAGATCGAGGACAAAGGG
66 GGAAAACAGATCGAAGACAAAGGG
* * * * *
87940340 CTTTAAACCCCTAAGCAGTAGGGGAACAGGTTG-A-ACTTACAGATCTTAACACCTTAAGTAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGACTTACAGATCTTAACACCCTAAGCAGTA
** ** * *
87940403 GGGGAACAGATCGAAGATGATGGT
66 GGAAAACAGATCGAAGACAAAGGG
*
87940427 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCT
87940459 AGAAATTACA
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
87 69 0.69
88 1 0.01
89 30 0.30
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (89 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGACTTACAGATCTTAACACCCTAAGCAGTA
GGAAAACAGATCGAAGACAAAGGG
Found at i:87940420 original size:132 final size:132
Alignment explanation
Indices: 87940155--87940411 Score: 329
Period size: 132 Copynumber: 1.9 Consensus size: 132
87940145 AGATCGGTGA
* * * ** * *
87940155 ATTTACAGATCTTAACCCCCTAAACAGTAGGGAAACAGATCGAAGGTGATGAGCTTTAACCCCCT
1 ATTTTCAGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGGCAAAGAGCTTTAAACCCCT
* * *
87940220 AAGCAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGA
66 AAGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGA
87940285 AG
131 AG
*
87940287 ATTTTCAGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCG-AGGACAAAGGGCTTTAAACCCC
1 ATTTTCAGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGG-CAAAGAGCTTTAAACCCC
* ** * * *
87940351 TAAGCAGTAGGGGAACAGGTTGAACTTACAGATCTT-AACACCTTAAGTAGTAGGGGAACAG
65 TAAGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAAC-CCCTAAGCAGTAGGGGAACAG
87940412 ATCGAAGATG
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
131 6 0.06
132 100 0.94
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (132 bp):
ATTTTCAGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGGCAAAGAGCTTTAAACCCCT
AAGCAGTAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGA
AG
Found at i:87940448 original size:44 final size:44
Alignment explanation
Indices: 87940165--87940455 Score: 173
Period size: 44 Copynumber: 6.6 Consensus size: 44
87940155 ATTTACAGAT
* * * *
87940165 CTTAACCCCCTAAACAGTAGGGAAACAGATCGAAGGTGATGAG-C
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATTATG-GTC
* * * ** *
87940209 TTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAGAC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATTATGGTC
* * * *
87940252 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTTCAGAT-
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATTAT--GGTC
** * ** * *
87940297 CTTAACCCCCTAAGCAGTAGGAAAACAGATCGAGGACAAAGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATTATGGTC
* * * * * * * *
87940341 TTTAAACCCCTAAGCAGTAGGGGAACAGGTTGAA-CTTACAGAT-
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATTA-TGGTC
* * * * *
87940384 CTTAACACCTTAAGTAGTAGGGGAACAGATCGAAGATGATGGTC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATTATGGTC
87940428 CTTAACCCCCTAAGCAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
87940456 GCTAGAAATT
Statistics
Matches: 180, Mismatches: 55, Indels: 24
0.69 0.21 0.09
Matches are distributed among these distances:
42 2 0.01
43 63 0.35
44 85 0.47
45 29 0.16
46 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (44 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATTATGGTC
Found at i:87944116 original size:58 final size:58
Alignment explanation
Indices: 87944046--87944161 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
87944036 CGATATGCTT
87944046 AAGTTGAATTGGATTTGGAAATTTGATGCACTAAATGAGTGTTACAATGAATAAACTA
1 AAGTTGAATTGGATTTGGAAATTTGATGCACTAAATGAGTGTTACAATGAATAAACTA
87944104 AAGTTGAATTGGATTTGGAAATTTGATGCACTAAATGAGTGTTACAATGAATAAACTA
1 AAGTTGAATTGGATTTGGAAATTTGATGCACTAAATGAGTGTTACAATGAATAAACTA
87944162 TGTCGTATAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.33
Consensus pattern (58 bp):
AAGTTGAATTGGATTTGGAAATTTGATGCACTAAATGAGTGTTACAATGAATAAACTA
Found at i:87946497 original size:40 final size:40
Alignment explanation
Indices: 87946389--87946598 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
87946379 CGGGATTTAA
* * * * *
87946389 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
87946429 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87946469 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87946509 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87946549 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87946589 CCGGATATAT
1 CCGGATATAT
87946599 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:87954631 original size:40 final size:40
Alignment explanation
Indices: 87954523--87954692 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
87954513 CGGGATTTAA
* * * * *
87954523 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
87954563 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87954603 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87954643 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
87954683 CCGGATATAT
1 CCGGATATAT
87954693 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:87956670 original size:43 final size:44
Alignment explanation
Indices: 87956599--87956737 Score: 156
Period size: 43 Copynumber: 3.1 Consensus size: 44
87956589 TATCAAAATG
* *
87956599 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
87956643 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
87956686 T-ATTATTCGAGCCTTTGAGCCTAGCAGGCTATATATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGC----TATAATGCCGGTGAAA
87956735 TGA
1 TGA
87956738 AATGTTATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
42 1 0.01
43 36 0.46
44 8 0.10
45 16 0.21
49 16 0.21
50 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:87957068 original size:38 final size:38
Alignment explanation
Indices: 87957034--87957242 Score: 267
Period size: 38 Copynumber: 5.5 Consensus size: 38
87957024 GCAGGCTATA
* * *
87957034 TGCTGG-AATTATATCTGGGTTAAATCCCGTAGGCTTTG
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
* *
87957072 TGTTGGTAATATATCCGTGTTAAATCCCGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
*
87957110 TGCTGGTAATATATCTGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* *
87957148 TGCTGGTAATATATCCGGGTTAATTCCCACAGGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* * * *
87957186 TGCTGGTATTATATCCGGGTTAAATCTCGCAGGCCTAG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
87957224 TACTGGTATTATATTCGGG
1 TGCTGGTAATATATCCGGG
87957243 CCTTTGAGCC
Statistics
Matches: 151, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 149 0.99
39 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (38 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:87957377 original size:45 final size:45
Alignment explanation
Indices: 87957235--87957394 Score: 200
Period size: 45 Copynumber: 3.6 Consensus size: 45
87957225 ACTGGTATTA
* * * *
87957235 TATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATAC
*
87957280 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGATGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATAC
*
87957325 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGATGAGAT-AC
* * *
87957370 TAATCGGGCC-TCGATCCTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
87957395 GAAATGTCAG
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
44 16 0.16
45 84 0.82
46 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATAC
Found at i:87957653 original size:33 final size:33
Alignment explanation
Indices: 87957611--87957675 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
87957601 GTGTGAAAGT
87957611 ATGTGAAAGTATTTGAGTTAATTATGTTATATA
1 ATGTGAAAGTATTTGAGTTAATTATGTTATATA
87957644 ATGTGAAAGTATTTGAGTTAATTATGTTATAT
1 ATGTGAAAGTATTTGAGTTAATTATGTTATAT
87957676 GAATTCAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.46
Consensus pattern (33 bp):
ATGTGAAAGTATTTGAGTTAATTATGTTATATA
Found at i:87958892 original size:2 final size:2
Alignment explanation
Indices: 87958885--87959020 Score: 86
Period size: 2 Copynumber: 69.0 Consensus size: 2
87958875 TATATTCTAC
* * *
87958885 AT AT AT AT AT AT AT AT TT CT AT A- ACT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* * *
87958926 TT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT GT AT AT AC
1 AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
* * * * *
87958970 AT -T TT A- AT AT CT CAT AT AT AT -T TT TT AT AT AT AT AT GT AT
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
87959010 AT -T AT GT AT AT
1 AT AT AT AT AT AT
87959021 TTTCTTTTTT
Statistics
Matches: 105, Mismatches: 19, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
1 6 0.06
2 94 0.90
3 5 0.05
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (2 bp):
AT
Found at i:87958938 original size:44 final size:46
Alignment explanation
Indices: 87958875--87958968 Score: 131
Period size: 44 Copynumber: 2.1 Consensus size: 46
87958865 TGCTTAATAC
* * *
87958875 TATATTCTACATATATATATATATATTTCTATA-ACTATATTATGTA
1 TATATTCTACATATATATATATATATATATATATA-TATATCATGTA
87958921 TATATT-T-CATATATATATATATATATATATATATATATCATGTA
1 TATATTCTACATATATATATATATATATATATATATATATCATGTA
87958965 TATA
1 TATA
87958969 CATTTTAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 36 0.82
45 2 0.05
46 6 0.14
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.50
Consensus pattern (46 bp):
TATATTCTACATATATATATATATATATATATATATATATCATGTA
Found at i:87959047 original size:26 final size:25
Alignment explanation
Indices: 87959016--87959071 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
87959006 GTATATTATG
* *
87959016 TATATTTTCTTTTTTAATACTACGTA
1 TATATTTT-ATTTCTAATACTACGTA
* *
87959042 TATATTTTATTTCTATTATTACGTA
1 TATATTTTATTTCTAATACTACGTA
87959067 TATAT
1 TATAT
87959072 CTTAATGCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.59
Consensus pattern (25 bp):
TATATTTTATTTCTAATACTACGTA
Found at i:87962184 original size:39 final size:39
Alignment explanation
Indices: 87962140--87962216 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
87962130 CAATTTGGGG
87962140 TAAGGATTTCTTTACAATGGGAGGCAATATAATGTCACT
1 TAAGGATTTCTTTACAATGGGAGGCAATATAATGTCACT
*
87962179 TAAGGATTTCTTTACAATGGGAGGTAATATAATGTCAC
1 TAAGGATTTCTTTACAATGGGAGGCAATATAATGTCAC
87962217 CATCACCTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.34
Consensus pattern (39 bp):
TAAGGATTTCTTTACAATGGGAGGCAATATAATGTCACT
Found at i:87966470 original size:46 final size:46
Alignment explanation
Indices: 87966417--87966592 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
87966407 TATTTGGGCA
87966417 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
87966463 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
87966510 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
87966556 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87966593 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:87966572 original size:93 final size:93
Alignment explanation
Indices: 87966413--87966584 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
87966403 GGGATATTTG
* *
87966413 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
87966478 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
87966506 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
87966571 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
87966585 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:87969825 original size:14 final size:12
Alignment explanation
Indices: 87969795--87969825 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
87969785 CCTCACACGC
87969795 CTGTGTGCCAGG
1 CTGTGTGCCAGG
*
87969807 CTGTGTGCTAGG
1 CTGTGTGCCAGG
87969819 CTGTGTG
1 CTGTGTG
87969826 AAACCTAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.19, G:0.42, T:0.32
Consensus pattern (12 bp):
CTGTGTGCCAGG
Found at i:87970994 original size:158 final size:158
Alignment explanation
Indices: 87970706--87971022 Score: 582
Period size: 158 Copynumber: 2.0 Consensus size: 158
87970696 TCATGTATGA
87970706 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACCTTGTATCCGTATATCATATATA
1 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACCTTGTATCCGTATATCATATATA
*
87970771 AACTATTTCCATGTAAATACCTGTACTAGTTCGTATTGAACTTGTATAATCCCATAAAAACACTA
66 AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAAAAACACTA
87970836 TGCTCGTTGAACCACTTAGAATATCGTT
131 TGCTCGTTGAACCACTTAGAATATCGTT
87970864 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACCATT-TATCCGTATATCATATAT
1 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACC-TTGTATCCGTATATCATATAT
* * *
87970928 AAACTATTTCCATGTAAATACCTGTACTAGTTCATATTGGACTTGTATAATCCCGTAATAACACT
65 AAACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAAAAACACT
87970993 ATGCTCGTTGAACCACTTAGAATATCGTT
130 ATGCTCGTTGAACCACTTAGAATATCGTT
87971022 A
1 A
87971023 GATACGTGGA
Statistics
Matches: 154, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
158 152 0.99
159 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (158 bp):
ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACCTTGTATCCGTATATCATATATA
AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAAAAACACTA
TGCTCGTTGAACCACTTAGAATATCGTT
Found at i:87978522 original size:51 final size:50
Alignment explanation
Indices: 87978438--87978556 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 50
87978428 CTCAAACTTA
* * * * *
87978438 CTTCATACTTATCCGGAATTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTATCCGGAATAAATACCTTATTGCTCGAACTTCAACAAGAG
* * *
87978488 CTTCATATTTCATCCGGAATAAATACTTTATTGCTCGAGCTTTAACAAGAG
1 CTTCATATTT-ATCCGGAATAAATACCTTATTGCTCGAACTTCAACAAGAG
87978539 CTTCATATTTTATCCGGA
1 CTTCATA-TTTATCCGGA
87978557 TAACTTAGTT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
50 9 0.15
51 47 0.80
52 3 0.05
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.37
Consensus pattern (50 bp):
CTTCATATTTATCCGGAATAAATACCTTATTGCTCGAACTTCAACAAGAG
Found at i:87980522 original size:25 final size:26
Alignment explanation
Indices: 87980481--87980542 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
87980471 AGTGATAAAT
*
87980481 GGTAAGCTCCT-TCGAGCTGAATAAC
1 GGTAAGCTCATATCGAGCTGAATAAC
* *
87980506 GGTAAGCTCATAT-GAGCTGAGTATC
1 GGTAAGCTCATATCGAGCTGAATAAC
*
87980531 GATAAGCTCATA
1 GGTAAGCTCATA
87980543 AGAGGTGGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (26 bp):
GGTAAGCTCATATCGAGCTGAATAAC
Found at i:87987689 original size:21 final size:21
Alignment explanation
Indices: 87987663--87987807 Score: 166
Period size: 21 Copynumber: 6.7 Consensus size: 21
87987653 CGGAGGTAAA
*
87987663 GGAGGGTATGGAGGTGGCCAC
1 GGAGGGTATGGTGGTGGCCAC
* *
87987684 GGAGGGTATGGAGGTGGGCAC
1 GGAGGGTATGGTGGTGGCCAC
*
87987705 GGAGGGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGCCAC
*
87987726 GGA-GGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGCCAC
87987746 GGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTA---TGGTGGTGGCCAC
*
87987770 GGAGGATATGGTGGCGGTGGCCAC
1 GGAGGGTATGGT---GGTGGCCAC
*
87987794 GGAGGATATGGTGG
1 GGAGGGTATGGTGG
87987808 CGGTGGACAT
Statistics
Matches: 112, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
20 20 0.18
21 52 0.46
24 40 0.36
ACGTcount: A:0.18, C:0.11, G:0.53, T:0.18
Consensus pattern (21 bp):
GGAGGGTATGGTGGTGGCCAC
Found at i:87987765 original size:24 final size:24
Alignment explanation
Indices: 87987675--87987822 Score: 145
Period size: 24 Copynumber: 6.6 Consensus size: 24
87987665 AGGGTATGGA
* *
87987675 GGTGGCCACGGAGGGTATGGAGGT
1 GGTGGACACGGAGGGTATGGTGGT
87987699 -G-GG-CACGGAGGGTA---TGGT
1 GGTGGACACGGAGGGTATGGTGGT
87987717 GGTGGACACGGA-GGTA---TGGT
1 GGTGGACACGGAGGGTATGGTGGT
87987737 GGTGGACACGGAGGGTATGGTGGT
1 GGTGGACACGGAGGGTATGGTGGT
* * *
87987761 GGTGGCCACGGAGGATATGGTGGC
1 GGTGGACACGGAGGGTATGGTGGT
* * *
87987785 GGTGGCCACGGAGGATATGGTGGC
1 GGTGGACACGGAGGGTATGGTGGT
*
87987809 GGTGGACATGGAGG
1 GGTGGACACGGAGG
87987823 AGGTTATAAA
Statistics
Matches: 111, Mismatches: 6, Indels: 14
0.85 0.05 0.11
Matches are distributed among these distances:
18 3 0.03
19 1 0.01
20 22 0.20
21 21 0.19
22 2 0.02
23 1 0.01
24 61 0.55
ACGTcount: A:0.18, C:0.12, G:0.53, T:0.18
Consensus pattern (24 bp):
GGTGGACACGGAGGGTATGGTGGT
Found at i:87993568 original size:26 final size:26
Alignment explanation
Indices: 87993539--87993648 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
87993529 TGGTACAAAT
87993539 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
87993565 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87993591 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87993617 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87993643 TGATAA
1 TGATAA
87993649 GAATTTCATG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87997798 original size:16 final size:17
Alignment explanation
Indices: 87997745--87997822 Score: 67
Period size: 16 Copynumber: 4.8 Consensus size: 17
87997735 GATTGATTTA
* *
87997745 TATTTT-ATATATAAAT
1 TATTTTAATATTTAATT
*
87997761 TA-TTTAA-ATATAATT
1 TATTTTAATATTTAATT
*
87997776 TAATTTAATATTTAATT
1 TATTTTAATATTTAATT
*
87997793 T-TTTTAATATTTTATT
1 TATTTTAATATTTAATT
87997809 TATTATTAAT-TTTA
1 TATT-TTAATATTTA
87997823 CAAAAATTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
15 12 0.23
16 22 0.42
17 13 0.25
18 5 0.10
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTTAATATTTAATT
Done.