Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 302 of 328
Found at i:89947149 original size:93 final size:93
Alignment explanation
Indices: 89946990--89947160 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
89946980 GGATGGTTGA
* * * *
89946990 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
89947055 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
89947083 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
89947148 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
89947161 ACTTATGGAT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89947224 original size:139 final size:139
Alignment explanation
Indices: 89946994--89947307 Score: 583
Period size: 139 Copynumber: 2.3 Consensus size: 139
89946984 GGTTGAGCAT
* *
89946994 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
89947059 TCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
66 TCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
89947124 TGCAAACGC
131 TGCAAACGC
*
89947133 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
*
89947198 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
66 TCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
*
89947263 TGCGAACGC
131 TGCAAACGC
89947272 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89947308 GCGGGTTACA
Statistics
Matches: 170, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 170 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (139 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
TCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
TGCAAACGC
Found at i:89950297 original size:15 final size:15
Alignment explanation
Indices: 89950258--89950336 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
89950248 GTATCTTGGG
*
89950258 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
89950273 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
89950288 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
89950302 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
89950317 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
89950331 TTTCTT
1 TTTCTT
89950337 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:89950321 original size:29 final size:29
Alignment explanation
Indices: 89950249--89950335 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
89950239 CATAGTATCG
* * * *
89950249 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
89950279 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
89950308 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
89950336 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:89952768 original size:46 final size:46
Alignment explanation
Indices: 89952718--89953032 Score: 349
Period size: 46 Copynumber: 6.8 Consensus size: 46
89952708 TGGTTGAGCA
*
89952718 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
89952764 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * *
89952809 CATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
89952857 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
89952903 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
89952948 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
89952996 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89953033 GCGGGTTACA
Statistics
Matches: 225, Mismatches: 26, Indels: 36
0.78 0.09 0.13
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
45 6 0.03
46 131 0.58
47 56 0.25
48 6 0.03
50 8 0.04
51 6 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:89952874 original size:93 final size:93
Alignment explanation
Indices: 89952715--89952885 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
89952705 GGATGGTTGA
* * * * *
89952715 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
89952780 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
89952808 GCATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
89952873 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
89952886 ACTTATGGAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89952949 original size:139 final size:139
Alignment explanation
Indices: 89952719--89953032 Score: 574
Period size: 139 Copynumber: 2.3 Consensus size: 139
89952709 GGTTGAGCAT
* *
89952719 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
89952784 TCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGA
66 TCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGA
89952849 TGCAAACGC
131 TGCAAACGC
*
89952858 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
* *
89952923 TCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
66 TCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGA
*
89952988 TGCGAACGC
131 TGCAAACGC
89952997 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89953033 GCGGGTTACA
Statistics
Matches: 169, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 169 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (139 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAG
TCCGAGTTCGTGAGATGTAACTAGGCATCCAAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGA
TGCAAACGC
Found at i:89961162 original size:29 final size:27
Alignment explanation
Indices: 89961128--89961230 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
89961118 TACTCGATCA
*
89961128 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
89961157 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
89961186 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
89961215 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
89961231 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:89969534 original size:2 final size:2
Alignment explanation
Indices: 89969527--89969564 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
89969517 ATAGAAGAAA
89969527 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89969565 GATGTTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:89969907 original size:17 final size:18
Alignment explanation
Indices: 89969871--89969907 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
89969861 ATAATAGTAA
89969871 TAATAAAATGCTAATAAG
1 TAATAAAATGCTAATAAG
89969889 TAAT-AAATG-TAATATAG
1 TAATAAAATGCTAATA-AG
89969906 TA
1 TA
89969908 CTAGAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 9 0.50
18 4 0.22
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.32
Consensus pattern (18 bp):
TAATAAAATGCTAATAAG
Found at i:89970459 original size:3 final size:3
Alignment explanation
Indices: 89970193--89970448 Score: 168
Period size: 3 Copynumber: 86.0 Consensus size: 3
89970183 TTGCATTAAC
* * * * * *
89970193 AAT AAT AAT AGT AAG AAT AAT AAC GAT AAT -AT AAC AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
89970240 AA- AA- AAT AAT AAC AAT AAT AGA- AAT AAT AAA AAT AAA AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * * * *
89970283 AAGGT AAC AAA AAT AAT ACT GAC ACT GAC AAT AAT ACT AAT AAT AAC
1 AA--T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
89970330 AAT -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
89970377 AAT AAT AAT AGA- AAT AAA AAT CAT -AT AAGT AAT AAT AAT ACA- CAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT A-AT AAT
** *
89970422 AGG AAT AAT AAT AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
89970449 TTGAATAATA
Statistics
Matches: 190, Mismatches: 50, Indels: 26
0.71 0.19 0.10
Matches are distributed among these distances:
2 13 0.07
3 169 0.89
4 6 0.03
5 2 0.01
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:89974246 original size:15 final size:16
Alignment explanation
Indices: 89974226--89974258 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
89974216 CTAAGTAATT
89974226 AAATTTAATTC-ATTC
1 AAATTTAATTCTATTC
*
89974241 AAATTTCATTCTATTC
1 AAATTTAATTCTATTC
89974257 AA
1 AA
89974259 TTAAATCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATTTAATTCTATTC
Found at i:89974875 original size:68 final size:68
Alignment explanation
Indices: 89974772--89974904 Score: 248
Period size: 68 Copynumber: 2.0 Consensus size: 68
89974762 GAAGAAAGAA
89974772 AAAAAAGATGATAACTTTTTTTCACTTATTTTATTTTATGATATTTGATTAATTTACCAAATTAA
1 AAAAAAGATGATAACTTTTTTTCACTTATTTTATTTTATGATATTTGATTAATTTACCAAATTAA
89974837 AAT
66 AAT
* *
89974840 AAAAAAGATGATATCTTTTTTTCACTTATTTTATTTTATGATATTTTATTAATTTACCAAATTAA
1 AAAAAAGATGATAACTTTTTTTCACTTATTTTATTTTATGATATTTGATTAATTTACCAAATTAA
89974905 CCTTAAGTAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (68 bp):
AAAAAAGATGATAACTTTTTTTCACTTATTTTATTTTATGATATTTGATTAATTTACCAAATTAA
AAT
Found at i:89978502 original size:72 final size:72
Alignment explanation
Indices: 89978415--89978681 Score: 301
Period size: 72 Copynumber: 3.7 Consensus size: 72
89978405 TGTGGATCTG
* * ** * *
89978415 GGTACTGACTTTGTGTATAAACCCGTGAGTAACTCGTTGAGCGAGCA-TATCATGTTAATGCTTT
1 GGTACTAACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGCATTA-CATGATAATGCTTT
89978479 GGGGTCCT
65 GGGGTCCT
* *
89978487 GGTACTAACTTTGTGTATAAACCCATGAGTAGCTCAATGAGTGGGCATTACATGATAATGCTTTG
1 GGTACTAACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGCATTACATGATAATGCTTTG
89978552 GGGT-CT
66 GGGTCCT
* * *
89978558 GGGTGCTGAA-TTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGAATTACATGCTAATGCTT
1 -GGTACT-AACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGCATTACATGATAATGCTT
* *
89978622 TAGGGTCCG
64 TGGGGTCCT
** * * *
89978631 GGTGTTGACTTTGTGTACAGACCCGTGAGTAGCTCAA--ATGCGGGCATTACA
1 GGTACTAACTTTGTGTATAAACCCGTGAGTAGCTCAATGA-GCGGGCATTACA
89978682 AAATATGTGG
Statistics
Matches: 169, Mismatches: 20, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
70 1 0.01
71 14 0.08
72 149 0.88
73 5 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (72 bp):
GGTACTAACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGCATTACATGATAATGCTTTG
GGGTCCT
Found at i:89980693 original size:46 final size:48
Alignment explanation
Indices: 89980535--89980700 Score: 160
Period size: 48 Copynumber: 3.5 Consensus size: 48
89980525 AAGCTGACAC
* * * **
89980535 CATGTCCCAGAAAAGTCTTACACTAGCTTGTATATCGT-GAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATC-TCGAGGCTGATG
* * **
89980583 CATGTCCCAGACATGCCTTACACTGGCTTAAATATCTCGAAGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCTGATG
* ** *
89980631 CATGTCCCAAACATGTCTTACACTGGCTCT-CTTA-CT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TAAATATCTCGAGGCTGATG
*
89980677 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
89980701 AGCACACAAG
Statistics
Matches: 97, Mismatches: 19, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 28 0.29
47 3 0.03
48 65 0.67
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCTGATG
Found at i:89983111 original size:27 final size:26
Alignment explanation
Indices: 89983049--89983163 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
89983039 AGCATGGCTG
* *
89983049 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
89983075 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
89983103 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
89983130 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
89983157 CCAGAAC
1 CCAGAAC
89983164 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 4 0.05
27 58 0.74
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:89983113 original size:54 final size:54
Alignment explanation
Indices: 89983049--89983163 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
89983039 AGCATGGCTG
* *
89983049 CCAGAACAGATA-ATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
89983103 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
89983157 CCAGAAC
1 CCAGAAC
89983164 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:89984818 original size:26 final size:26
Alignment explanation
Indices: 89984782--89984891 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
89984772 CATGAAATTC
89984782 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
89984808 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
89984834 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
89984860 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
89984886 TTATCA
1 TTATCA
89984892 AATTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:89985764 original size:13 final size:13
Alignment explanation
Indices: 89985733--89985778 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
89985723 ATACTTAAGT
89985733 ATATAATAATAT-
1 ATATAATAATATA
89985745 A-ATAAT-ATATTA
1 ATATAATAATA-TA
89985757 ATATAATAATATA
1 ATATAATAATATA
89985770 ATATAATAA
1 ATATAATAA
89985779 AACATAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 3 0.10
11 6 0.20
12 2 0.07
13 16 0.53
14 3 0.10
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATATAATAATATA
Found at i:89985778 original size:8 final size:8
Alignment explanation
Indices: 89985733--89985772 Score: 71
Period size: 8 Copynumber: 5.0 Consensus size: 8
89985723 ATACTTAAGT
89985733 ATATAATA
1 ATATAATA
89985741 ATATAATA
1 ATATAATA
*
89985749 ATATATTA
1 ATATAATA
89985757 ATATAATA
1 ATATAATA
89985765 ATATAATA
1 ATATAATA
89985773 TAATAAAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATATAATA
Found at i:89985778 original size:16 final size:15
Alignment explanation
Indices: 89985733--89985778 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
89985723 ATACTTAAGT
89985733 ATATAATAATATAATA
1 ATAT-ATAATATAATA
89985749 ATATATTAATATAAT-
1 ATATA-TAATATAATA
89985764 A-ATATAATATAATA
1 ATATATAATATAATA
89985778 A
1 A
89985779 AACATAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 9 0.32
14 4 0.14
15 2 0.07
16 13 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
ATATATAATATAATA
Found at i:89986579 original size:27 final size:28
Alignment explanation
Indices: 89986546--89986601 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
89986536 TATGTGTATA
*
89986546 ATTGAAA-AGTGTATTGAATTGG-AATTG
1 ATTGAAATAGTATATTG-ATTGGAAATTG
*
89986573 ATTGAAATTGTATATTGATTGGAAATTG
1 ATTGAAATAGTATATTGATTGGAAATTG
89986601 A
1 A
89986602 ATTATGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.39
Consensus pattern (28 bp):
ATTGAAATAGTATATTGATTGGAAATTG
Found at i:89986615 original size:18 final size:17
Alignment explanation
Indices: 89986569--89986616 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
89986559 TTGAATTGGA
*
89986569 ATTGATTGAAATTGTAT
1 ATTGATTGAAATTGAAT
89986586 ATTGATTGGAAATTGAAT
1 ATTGATT-GAAATTGAAT
89986604 -TATGAATTGAAAT
1 AT-TG-ATTGAAAT
89986617 ACCCTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 8 0.30
18 16 0.59
19 3 0.11
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.42
Consensus pattern (17 bp):
ATTGATTGAAATTGAAT
Found at i:89992182 original size:21 final size:23
Alignment explanation
Indices: 89992156--89992201 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
89992146 TAAAAGGTAT
*
89992156 TTAC-AAATTAAATC-TCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
*
89992177 TTACAAAATCATATCTTCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
89992200 TT
1 TT
89992202 GCATATCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (23 bp):
TTACAAAATCAAATCTTCTAAGA
Found at i:89992192 original size:22 final size:21
Alignment explanation
Indices: 89992156--89992251 Score: 76
Period size: 19 Copynumber: 4.7 Consensus size: 21
89992146 TAAAAGGTAT
* *
89992156 TTACAAATTAAATCTCTAAGA
1 TTACAAATCATATCTCTAAGA
89992177 TTACAAAATCATATCTTCTAAGA
1 TTAC-AAATCATATC-TCTAAGA
* * *
89992200 TTGCATATCATA--TCTAGGA
1 TTACAAATCATATCTCTAAGA
*
89992219 TTGC-AATCATA--TCTAAGA
1 TTACAAATCATATCTCTAAGA
*
89992237 TTACAGATCATATCT
1 TTACAAATCATATCT
89992252 AAGATTGCAT
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
18 15 0.25
19 16 0.26
21 5 0.08
22 15 0.25
23 10 0.16
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (21 bp):
TTACAAATCATATCTCTAAGA
Found at i:89992200 original size:23 final size:22
Alignment explanation
Indices: 89992156--89992214 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
89992146 TAAAAGGTAT
* *
89992156 TTACAAATTAAATC-TCTAAGA
1 TTACAAATCATATCTTCTAAGA
89992177 TTACAAAATCATATCTTCTAAGA
1 TTAC-AAATCATATCTTCTAAGA
* *
89992200 TTGCATATCATATCT
1 TTACAAATCATATCT
89992215 AGGATTGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 4 0.12
22 18 0.56
23 10 0.31
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (22 bp):
TTACAAATCATATCTTCTAAGA
Found at i:89992220 original size:19 final size:19
Alignment explanation
Indices: 89992193--89992266 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
89992183 AATCATATCT
89992193 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
89992212 TCTAGGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
* *
89992230 TCTAAGATTACAGATCATA
1 TCTAAGATTGCATATCATA
89992249 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
89992267 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
18 16 0.33
19 33 0.67
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:89992247 original size:37 final size:38
Alignment explanation
Indices: 89992186--89992266 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 38
89992176 ATTACAAAAT
* * *
89992186 CATATC-T-TCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTACAGATCATATCTAAGATTG
89992222 CA-ATCATATCTAAGATTACAGATCATATCTAAGATTG
1 CATATCATATCTAAGATTACAGATCATATCTAAGATTG
89992259 CATATCAT
1 CATATCAT
89992267 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
35 3 0.08
36 3 0.08
37 28 0.72
38 5 0.13
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (38 bp):
CATATCATATCTAAGATTACAGATCATATCTAAGATTG
Found at i:89992651 original size:45 final size:45
Alignment explanation
Indices: 89992596--89992872 Score: 197
Period size: 45 Copynumber: 6.1 Consensus size: 45
89992586 GGAAGGCGAT
* *
89992596 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
89992641 ATCTGTTATCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
89992686 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACATAGGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* *
89992731 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * * *
89992778 ATCTGTCATCTTGGATTTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* * *
89992823 ATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
89992870 ATC
1 ATC
89992873 ATCTTGGATC
Statistics
Matches: 176, Mismatches: 40, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
43 12 0.07
44 10 0.06
45 89 0.51
46 3 0.02
47 39 0.22
48 10 0.06
49 13 0.07
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:89992753 original size:47 final size:46
Alignment explanation
Indices: 89992694--89992845 Score: 125
Period size: 47 Copynumber: 3.3 Consensus size: 46
89992684 AAATCTGTCA
* *
89992694 TCTTGGATCTGCTTCGATGTAAACATAGGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCGATGTAAACACA-GAAGGTCAGATCTGCTATG
* * * * * *
89992741 TCTTCGATCTGCTCCCCG-TCT-AATACAGAGATGCCAAATCTG-TCA--
1 TCTTCGATCTGCT--TCGATGTAAACACAGA-AGGTCAGATCTGCT-ATG
* *
89992786 TCTTGGATTTGCTTCGATGTAAACACATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCGATGTAAACACA-GAAGGTCAGATCTGCTATG
89992833 TCTTCGATCTGCT
1 TCTTCGATCTGCT
89992846 CCTCGTCTAA
Statistics
Matches: 77, Mismatches: 18, Indels: 20
0.67 0.16 0.17
Matches are distributed among these distances:
43 2 0.03
44 2 0.03
45 26 0.34
46 6 0.08
47 37 0.48
48 2 0.03
49 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (46 bp):
TCTTCGATCTGCTTCGATGTAAACACAGAAGGTCAGATCTGCTATG
Found at i:89992764 original size:92 final size:91
Alignment explanation
Indices: 89992649--89992953 Score: 402
Period size: 92 Copynumber: 3.5 Consensus size: 91
89992639 AAATCTGTTA
* *
89992649 TCTTCGATTTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTGGATCTGCTTCGATGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGT
89992714 AAACATAGGAAGGTCAGATCTGCTATG
66 AAACATA-GAAGGTCAGATCTGCTATG
*
89992741 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATTTGCTTCGATGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGT
*
89992806 AAACACATGAAGGTCAGATCTGCTATG
66 AAACATA-GAAGGTCAGATCTGCTATG
* *
89992833 TCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAA----TCATCTTGGATCTACTTC-----
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGT
*
89992889 --A-AT-GAAGGTTAGATCTGCTATG
66 AAACATAGAAGGTCAGATCTGCTATG
* * **
89992911 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGT
1 TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
89992954 TTCTTCGATT
Statistics
Matches: 194, Mismatches: 15, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
78 51 0.26
80 1 0.01
81 1 0.01
82 1 0.01
88 16 0.08
92 124 0.64
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (91 bp):
TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGT
AAACATAGAAGGTCAGATCTGCTATG
Found at i:89993158 original size:220 final size:220
Alignment explanation
Indices: 89992892--89993702 Score: 1298
Period size: 220 Copynumber: 3.7 Consensus size: 220
89992882 CTACTTCAAT
*
89992892 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* **
89992957 TTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAGTACG
66 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
89993022 TGAAAGCCAAATCTACTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
*
89993087 GATCTACTTTGATATGAAAACATCC
196 GATCTACTTCGATATGAAAACATCC
89993112 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * *
89993177 TTTGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATCTCCTTCAGCGTAAACACG
66 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
89993242 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATTATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
* * ** **
89993307 AATCTACTTCGATGTGAAGGCATTT
196 GATCTACTTCGATATGAAAACATCC
* * *
89993332 GAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTATTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
89993397 TTTGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* *
89993462 TGAAAGCCAAATCTGCTATGTCTTCTATCTGCTCCTTGTCAACTCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
89993527 GATCTACTTCGATATGAAAACATCC
196 GATCTACTTCGATATGAAAACATCC
** * *
89993552 GAAGGTTAGATCTATTATGTCTTCGATCTACTCCCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
** * ** * *
89993617 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCCACTTTAGCGTAAACACC
66 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* *
89993682 TGAAGGTCAAATCTGCTATGT
131 TGAAAGCCAAATCTGCTATGT
89993703 TTAGCCTGTT
Statistics
Matches: 544, Mismatches: 47, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
220 544 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
GATCTACTTCGATATGAAAACATCC
Found at i:90004013 original size:40 final size:39
Alignment explanation
Indices: 90003956--90004180 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 39
90003946 TCGAATGATG
* *
90003956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTTACTAAA
* *
90003996 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
* * *
90004036 TTCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
* * *
90004076 TCCGGGCTAAGCCCGAAGGCATTAGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
* *
90004115 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTA-AA
90004156 -CCGGGCTATA-TCCCGAAGGCATTTG
1 TCCGGGCTA-AGT-CCGAAGGCATTTG
90004181 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.72
41 11 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:90004111 original size:79 final size:79
Alignment explanation
Indices: 90003956--90004178 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 79
90003946 TCGAATGATG
* * * *
90003956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCGGGCTAAG-CCCGAAGGCATT
*
90004020 TGTGCGAGTTACTAAA
64 AGTGCGAGTTACTAAA
*
90004036 TTCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-ATTCCGGGCTAAGCCCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGCCCGAAGGCATT
90004099 AGTGCGAGTTACTAAA
64 AGTGCGAGTTACTAAA
** * * *
90004115 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATATCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTA-AGCCCGAAGGCATT
90004179 TGAACGAGTA
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 67 0.54
80 49 0.39
81 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGCCCGAAGGCATTAG
TGCGAGTTACTAAA
Found at i:90004179 original size:119 final size:120
Alignment explanation
Indices: 90003956--90004180 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
90003946 TCGAATGATG
* *
90003956 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTAGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
90004021 GTGCGAGTTACTAAATTCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
* * **
90004076 TCCGGGCTAAG-CCCGAAGGCATTAGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTAGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* *
90004138 TTGTGCGAGTTACTATAA-CCGGGCT-ATATCCCGAAGGCATTTG
64 TTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
90004181 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 4 0.04
119 69 0.75
120 19 0.21
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTAGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:90004202 original size:79 final size:78
Alignment explanation
Indices: 90003963--90004213 Score: 269
Period size: 79 Copynumber: 3.2 Consensus size: 78
90003953 ATGTCCGGGC
* *
90003963 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCGGGCT-A-ATCCCGAAGGCATTTGTGCG
* *
90004026 AGTTACTAAATTCGGAC
63 AGTTACTAAATCCGG-T
* *
90004043 TAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-ATTCCGGGCTAAGCCCGAAGGCATTAGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAATCCCGAAGGCATTTGTGCGA
90004106 GTTACTAAATCCGGGT
64 GTTACTAAATCC-GGT
* * **
90004122 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATATCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTA-ATCCCGAAGGCATTTGTGCGAG
*
90004187 -TAGCTATATCCGGT
65 TTA-CTAAATCCGGT
* *
90004201 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
90004214 TACGTGATTA
Statistics
Matches: 147, Mismatches: 15, Indels: 19
0.81 0.08 0.10
Matches are distributed among these distances:
78 2 0.01
79 82 0.56
80 55 0.37
81 8 0.05
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAATCCCGAAGGCATTTGTGCGAGT
TACTAAATCCGGT
Found at i:90006920 original size:27 final size:28
Alignment explanation
Indices: 90006888--90006945 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
90006878 CATATGTGTA
*
90006888 TGATTGAAA-AGTTTATTGAATTGG-AAT
1 TGATTGAAATAGTATATTG-ATTGGAAAT
*
90006915 TGATTGAAATTGTATATTGATTGGAAAT
1 TGATTGAAATAGTATATTGATTGGAAAT
90006943 TGA
1 TGA
90006946 ATTATGAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.41
Consensus pattern (28 bp):
TGATTGAAATAGTATATTGATTGGAAAT
Found at i:90006959 original size:18 final size:17
Alignment explanation
Indices: 90006913--90006960 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
90006903 TTGAATTGGA
*
90006913 ATTGATTGAAATTGTAT
1 ATTGATTGAAATTGAAT
90006930 ATTGATTGGAAATTGAAT
1 ATTGATT-GAAATTGAAT
90006948 -TATGAATTGAAAT
1 AT-TG-ATTGAAAT
90006961 ACCCTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 8 0.30
18 16 0.59
19 3 0.11
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.42
Consensus pattern (17 bp):
ATTGATTGAAATTGAAT
Found at i:90010150 original size:24 final size:25
Alignment explanation
Indices: 90010115--90010161 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
90010105 AAAACTGTTT
*
90010115 TCAAAAAGAAAAG-AACCAAGAACC
1 TCAAAAAAAAAAGAAACCAAGAACC
90010139 TCAAAAAAAAAAGAAACCAAGAA
1 TCAAAAAAAAAAGAAACCAAGAA
90010162 AACAAAGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.68, C:0.17, G:0.11, T:0.04
Consensus pattern (25 bp):
TCAAAAAAAAAAGAAACCAAGAACC
Found at i:90010167 original size:24 final size:24
Alignment explanation
Indices: 90010116--90010167 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
90010106 AAACTGTTTT
* **
90010116 CAAAAAGAAAAGAACCAAGAACCT
1 CAAAAAAAAAAGAACCAAGAACAA
90010140 CAAAAAAAAAAGAAACCAAGAA-AA
1 CAAAAAAAAAAG-AACCAAGAACAA
90010164 CAAA
1 CAAA
90010168 GAAGAAGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.71, C:0.17, G:0.10, T:0.02
Consensus pattern (24 bp):
CAAAAAAAAAAGAACCAAGAACAA
Found at i:90010204 original size:6 final size:6
Alignment explanation
Indices: 90010190--90010243 Score: 67
Period size: 6 Copynumber: 9.3 Consensus size: 6
90010180 GTCCAGCCAG
* * *
90010190 AAAAGA AAAATA AAAAT- -AAGTA AAAATA AAAATA AAAATG AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
90010236 AAAATA AA
1 AAAATA AA
90010244 TTGTTAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
4 3 0.07
6 38 0.93
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:90010253 original size:18 final size:18
Alignment explanation
Indices: 90010189--90010243 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 18
90010179 CGTCCAGCCA
*
90010189 GAAAAGAAAAATAAAAAT
1 GAAAATAAAAATAAAAAT
90010207 AAGTAAAAATAAAAATAAAAAT
1 --G--AAAATAAAAATAAAAAT
90010229 GAAAATAAAAATAAA
1 GAAAATAAAAATAAA
90010244 TTGTTAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 14 0.44
20 2 0.06
22 16 0.50
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (18 bp):
GAAAATAAAAATAAAAAT
Found at i:90016825 original size:23 final size:23
Alignment explanation
Indices: 90016770--90016835 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
90016760 TATTACATTT
*
90016770 TTTTATATA-ATCTT-TTTA-TG
1 TTTTATATATATATTATTTATTG
* *
90016790 TTTTATTTTTATATTATTTATTG
1 TTTTATATATATATTATTTATTG
90016813 TTTTATATATATATATATGTTAT
1 TTTTATATATATAT-TAT-TTAT
90016836 GTATATCATG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 7 0.19
21 4 0.11
22 4 0.11
23 14 0.39
24 3 0.08
25 4 0.11
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.67
Consensus pattern (23 bp):
TTTTATATATATATTATTTATTG
Found at i:90029026 original size:119 final size:119
Alignment explanation
Indices: 90028843--90029287 Score: 746
Period size: 119 Copynumber: 3.7 Consensus size: 119
90028833 ACATTTATGT
** *
90028843 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAAAAACAAGTCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
*
90028908 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGTTTATAC
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGTTTATAC
90028962 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* *
90029027 TTTGACTCTCAGATGTTCTCAAAGATAGTAGATCTAACCTTCAGATGTTTATAC
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGTTTATAC
90029081 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * * *
90029146 TTTGACTCTCAGACATTCTCAAATATAACAGATCTAACCTTCAGATCTTTATAC
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGTTTATAC
* *
90029200 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGTAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * * *
90029265 TATGACTTTCAAATGTTCTCAAA
66 TTTGACTCTCAGACGTTCTCAAA
90029288 CAGACTCAAG
Statistics
Matches: 307, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 307 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (119 bp):
TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGTTTATAC
Found at i:90029342 original size:62 final size:62
Alignment explanation
Indices: 90029245--90029370 Score: 216
Period size: 62 Copynumber: 2.0 Consensus size: 62
90029235 TTACAAGGAA
* *
90029245 CAAATCGAGGACATTGTAGATATGACTTTCAAATGTTCTCAAACAGACTCAAGATGATTTGG
1 CAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGG
* *
90029307 CAAATCGAGGATATTGCAGATATGACTCTCAAATGTTCTCAAATAGACTCAAGATGATTTGG
1 CAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGG
90029369 CA
1 CA
90029371 TCCTTGTGCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (62 bp):
CAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGATGATTTGG
Found at i:90031230 original size:2 final size:2
Alignment explanation
Indices: 90031225--90031251 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
90031215 CATATATAGG
90031225 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
90031252 GCCTTATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:90032484 original size:48 final size:48
Alignment explanation
Indices: 90032413--90034058 Score: 2383
Period size: 48 Copynumber: 34.0 Consensus size: 48
90032403 CAAGATAAAT
* * *
90032413 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
90032461 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90032509 ATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90032557 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
90032605 ATATGTATATGTGGTAAAGCCGAATGTCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90032653 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
90032701 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AATACGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
90032748 ATTTGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * *
90032796 ATATGTATATGTGGTAAAGCCTCATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT-ATG
1 ATATGTATATGTGGTAAAGCC-GA-ATG-GCTAATG-TGAA---ATA-TGT---ATGA-G
* *
90032855 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ------ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90032909 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90032957 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT--G--A-G
*
90033010 TATTATATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ------ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033064 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033112 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033160 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033208 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * * * *
90033256 ATATGTTTATG-GCTAATG-TGAA---ATATATATG--AGA--TAT--G
1 ATATGTATATGTGGTAAAGCCGAATGGCTA-ATGTGAAATATGTATGAG
*
90033294 -T----ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033337 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
90033385 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
90033433 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033481 ATATGTATATGTGGTAATGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
90033529 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGGAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033577 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033625 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
90033673 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033721 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033769 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
90033817 ATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
90033865 ATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
90033913 ATATGTATACGTGGTAAAGCCGAATGACTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
90033961 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * *
90034009 AAATGTATATGTGGTAAAGCCAAATGACTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
90034057 AT
1 AT
90034059 GTGTGTATAT
Statistics
Matches: 1467, Mismatches: 83, Indels: 96
0.89 0.05 0.06
Matches are distributed among these distances:
33 4 0.00
34 5 0.00
35 3 0.00
37 5 0.00
38 3 0.00
39 2 0.00
40 3 0.00
41 3 0.00
42 2 0.00
43 3 0.00
44 5 0.00
46 3 0.00
47 48 0.03
48 1269 0.87
49 1 0.00
50 4 0.00
51 5 0.00
52 4 0.00
53 1 0.00
54 4 0.00
55 4 0.00
56 2 0.00
57 3 0.00
58 3 0.00
59 46 0.03
61 3 0.00
62 4 0.00
63 3 0.00
64 1 0.00
65 21 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:90032835 original size:65 final size:65
Alignment explanation
Indices: 90032754--90032881 Score: 238
Period size: 65 Copynumber: 2.0 Consensus size: 65
90032744 TGAGATTTGT
90032754 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCTC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCTC
* *
90032819 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
90032882 GAATGGCTAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (65 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCTC
Found at i:90033268 original size:33 final size:33
Alignment explanation
Indices: 90033231--90033299 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
90033221 GTAAAGCCGA
*
90033231 ATGGCTAATGTGAAATATATATGAGATATGTTT
1 ATGGCTAATGTGAAATATATATGAGATATGTAT
90033264 ATGGCTAATGTGAAATATATATGAGATATGTAT
1 ATGGCTAATGTGAAATATATATGAGATATGTAT
90033297 ATG
1 ATG
90033300 TGGTAAAGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.38
Consensus pattern (33 bp):
ATGGCTAATGTGAAATATATATGAGATATGTAT
Found at i:90033268 original size:81 final size:81
Alignment explanation
Indices: 90033183--90033347 Score: 303
Period size: 81 Copynumber: 2.0 Consensus size: 81
90033173 GTAAAGCCGA
* *
90033183 ATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 ATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
90033248 TATATGAGATATGTTT
66 TATATGAGATATGTAT
90033264 ATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 ATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
90033329 TATATGAGATATGTAT
66 TATATGAGATATGTAT
90033345 ATG
1 ATG
90033348 TGGTAAAGCC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (81 bp):
ATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
TATATGAGATATGTAT
Found at i:90034249 original size:37 final size:37
Alignment explanation
Indices: 90034199--90034338 Score: 271
Period size: 37 Copynumber: 3.8 Consensus size: 37
90034189 GGAAATATAT
90034199 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
90034236 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
90034273 TCCGGGTAAAACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
90034310 TCCGGGTAAGACCCGATGACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
90034339 GGACTATTCG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:90036438 original size:17 final size:18
Alignment explanation
Indices: 90036418--90036463 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
90036408 TTATTATGAG
*
90036418 TATTATTTTTAATTA-TA
1 TATTATTATTAATTATTA
*
90036435 TATTATTATTACTTATTA
1 TATTATTATTAATTATTA
90036453 TATATATTATT
1 TAT-TATTATT
90036464 TTCCTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.52
18 5 0.20
19 7 0.28
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTATTATTAATTATTA
Found at i:90036443 original size:20 final size:18
Alignment explanation
Indices: 90036393--90036465 Score: 62
Period size: 20 Copynumber: 4.0 Consensus size: 18
90036383 TTATATTATA
*
90036393 TATTATA-AAATTA-TTT
1 TATTATATATATTATTTT
*
90036409 TATTATGA-GTATTATTTT
1 TATTAT-ATATATTATTTT
*
90036427 TAATTATATATTATTATTACT
1 T-ATTATATA-TATTATT-TT
90036448 TATTATATATATTATTTT
1 TATTATATATATTATTTT
90036466 CCTTAAATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
16 6 0.13
17 5 0.11
18 6 0.13
19 12 0.26
20 15 0.33
21 2 0.04
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (18 bp):
TATTATATATATTATTTT
Found at i:90036549 original size:30 final size:32
Alignment explanation
Indices: 90036532--90036594 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
90036522 TATTTATTAA
90036532 TTAC-TTATATATATATA-TATTGTTTTATAC
1 TTACTTTATATATATATATTATTGTTTTATAC
*
90036562 GTTACTTTATATATATATATTATTTTTCTTATA
1 -TTACTTTATATATATATATTATTGTT-TTATA
90036595 TGTTTATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 4 0.14
32 13 0.46
33 6 0.21
34 5 0.18
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (32 bp):
TTACTTTATATATATATATTATTGTTTTATAC
Found at i:90036648 original size:18 final size:18
Alignment explanation
Indices: 90036625--90036663 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
90036615 ATATAATCTT
90036625 TATTATGTT-TTATTTTTA
1 TATTAT-TTATTATTTTTA
*
90036643 TATTATTTATTGTTTTTA
1 TATTATTTATTATTTTTA
90036661 TAT
1 TAT
90036664 ATATATGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
TATTATTTATTATTTTTA
Found at i:90036668 original size:24 final size:24
Alignment explanation
Indices: 90036568--90036669 Score: 68
Period size: 24 Copynumber: 4.3 Consensus size: 24
90036558 ATACGTTACT
* *
90036568 TTATATA-TATATATTAT-TTTTC
1 TTATATATTATTTATTATGTTTTA
* * **
90036590 TTATATGTT-TATATTACATTTTA
1 TTATATATTATTTATTATGTTTTA
* *
90036613 TTATATAATCTTTATTATGTTTTA
1 TTATATATTATTTATTATGTTTTA
* *
90036637 TTTTTATATTATTTATTGT-TTTTA
1 -TTATATATTATTTATTATGTTTTA
90036661 TATATATAT
1 T-TATATAT
90036670 GTTATGTATA
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
22 13 0.21
23 13 0.21
24 22 0.35
25 14 0.23
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (24 bp):
TTATATATTATTTATTATGTTTTA
Found at i:90042367 original size:14 final size:15
Alignment explanation
Indices: 90042350--90042418 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 15
90042340 TATTTTATCC
90042350 ATTATATTAT-TTTT
1 ATTATATTATATTTT
90042364 A-T-TATTATATTTT
1 ATTATATTATATTTT
90042377 ATT-TA-TATATTTT
1 ATTATATTATATTTT
*
90042390 ATTACATATCATATTTT
1 ATT--ATATTATATTTT
*
90042407 ATAATA-TATATT
1 ATTATATTATATT
90042419 ATTCCTTATA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
12 6 0.13
13 17 0.37
14 9 0.20
15 3 0.07
16 2 0.04
17 9 0.20
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTATATTATATTTT
Found at i:90042370 original size:17 final size:18
Alignment explanation
Indices: 90042336--90042393 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 18
90042326 AAAATAGTAC
**
90042336 ATATTA-TTTTATCCATT
1 ATATTATTTTTATATATT
90042353 ATATTATTTTTAT-TATT
1 ATATTATTTTTATATATT
90042370 ATATT-TTATTTATATATT
1 ATATTATT-TTTATATATT
*
90042388 TTATTA
1 ATATTA
90042394 CATATCATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 2 0.06
17 19 0.54
18 14 0.40
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
ATATTATTTTTATATATT
Found at i:90042421 original size:17 final size:16
Alignment explanation
Indices: 90042352--90042417 Score: 54
Period size: 17 Copynumber: 4.4 Consensus size: 16
90042342 TTTTATCCAT
*
90042352 TATAT-TATTTT-TAT
1 TATATATATTTTATAA
90042366 TAT-TATATTTTAT--
1 TATATATATTTTATAA
*
90042379 T-TATATATTTTATTA
1 TATATATATTTTATAA
*
90042394 CATATCATATTTTATAA
1 TATAT-ATATTTTATAA
90042411 TATATAT
1 TATATAT
90042418 TATTCCTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
12 1 0.02
13 12 0.29
14 9 0.21
15 1 0.02
16 5 0.12
17 14 0.33
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATATATTTTATAA
Found at i:90042734 original size:16 final size:15
Alignment explanation
Indices: 90042714--90042750 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
90042704 TATTTTTTTA
*
90042714 ATTTTTTTTGTATTT
1 ATTTTTTTTATATTT
*
90042729 ATTTTTTTTATCTTT
1 ATTTTTTTTATATTT
90042744 ATTTTTT
1 ATTTTTT
90042751 GATTTGTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.03, G:0.03, T:0.81
Consensus pattern (15 bp):
ATTTTTTTTATATTT
Found at i:90047674 original size:14 final size:14
Alignment explanation
Indices: 90047655--90047687 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
90047645 ATAACCGTAA
90047655 TAACTACTAAGCT-C
1 TAACTACTAA-CTGC
90047669 TAACTACTAACTGC
1 TAACTACTAACTGC
90047683 TAACT
1 TAACT
90047688 GCCATAACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 16 0.89
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.30
Consensus pattern (14 bp):
TAACTACTAACTGC
Found at i:90049189 original size:19 final size:20
Alignment explanation
Indices: 90049165--90049203 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
90049155 TAAAATATAG
90049165 TTTATATATTC-TA-ATTAAA
1 TTTATAT-TTCATATATTAAA
90049184 TTTATATTTCATATATTAAA
1 TTTATATTTCATATATTAAA
90049204 ATGTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 9 0.50
20 6 0.33
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTATATTTCATATATTAAA
Found at i:90050415 original size:31 final size:31
Alignment explanation
Indices: 90050377--90050436 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
90050367 AAATAACCAA
* *
90050377 GTGACTTAAATAAATACTTCCGAATAGTTAC
1 GTGACTTAAATAAAAACTTCCAAATAGTTAC
*
90050408 GTGACTTAAATAAAAACTTTCAAATAGTT
1 GTGACTTAAATAAAAACTTCCAAATAGTT
90050437 GAGTGATCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (31 bp):
GTGACTTAAATAAAAACTTCCAAATAGTTAC
Found at i:90051543 original size:35 final size:36
Alignment explanation
Indices: 90051485--90051610 Score: 177
Period size: 35 Copynumber: 3.5 Consensus size: 36
90051475 AATCATATCT
90051485 TCTAAGATTGCATATCACT-TCTAAGATTGCAATCATA
1 TCTAAGATTGC-TATCA-TATCTAAGATTGCAATCATA
90051522 TCTAAGATTG-TATCATATCTAAGATTGCATATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCA-ATCATA
* *
90051558 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
90051593 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
90051611 TGAAGATTAT
Statistics
Matches: 82, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
34 1 0.01
35 34 0.41
36 21 0.26
37 26 0.32
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:90051547 original size:54 final size:54
Alignment explanation
Indices: 90051485--90051610 Score: 236
Period size: 54 Copynumber: 2.3 Consensus size: 54
90051475 AATCATATCT
90051485 TCTAAGATTGCATATCACT-TCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCA-TATCTAAGATTGCAATCATATCTAAGATTGTATCATA
90051539 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
90051593 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
90051611 TGAAGATTAT
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
53 1 0.01
54 70 0.99
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:90051554 original size:14 final size:15
Alignment explanation
Indices: 90051517--90051608 Score: 78
Period size: 17 Copynumber: 5.5 Consensus size: 15
90051507 AAGATTGCAA
90051517 TCATATCTAAGATTG
1 TCATATCTAAGATTG
90051532 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
90051549 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
90051568 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
90051586 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
90051603 -CATATC
1 TCATATC
90051609 ATTGAAGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
14 6 0.09
17 31 0.44
18 16 0.23
19 17 0.24
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:90051618 original size:17 final size:19
Alignment explanation
Indices: 90051485--90051610 Score: 194
Period size: 19 Copynumber: 6.9 Consensus size: 19
90051475 AATCATATCT
90051485 TCTAAGATTGCATATCACT-
1 TCTAAGATTGCATATCA-TA
90051504 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
90051522 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
90051539 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
90051558 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
90051576 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
90051593 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
90051611 TGAAGATTAT
Statistics
Matches: 100, Mismatches: 0, Indels: 14
0.88 0.00 0.12
Matches are distributed among these distances:
17 33 0.33
18 30 0.30
19 37 0.37
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:90052016 original size:45 final size:45
Alignment explanation
Indices: 90051961--90052234 Score: 270
Period size: 45 Copynumber: 6.1 Consensus size: 45
90051951 GGAAGGCGAT
* * *
90051961 ATCTGCTATCTTTGATCTGCTCACCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
90052006 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
90052051 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACATAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
90052095 ATTTTTTATC-TCTGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
90052140 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* *
90052185 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
90052232 ATC
1 ATC
90052235 ATCTTGGATC
Statistics
Matches: 185, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
43 6 0.03
44 45 0.24
45 102 0.55
46 2 0.01
47 19 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:90052083 original size:89 final size:88
Alignment explanation
Indices: 90051961--90052234 Score: 284
Period size: 89 Copynumber: 3.0 Consensus size: 88
90051951 GGAAGGCGAT
* *
90051961 ATCTGCTATCTTTGATCTGCTCACCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCT-TCTTCGATCTGCTC-CCGTCTAATACACAGACGCCAAATCTGTTATCTTCGATCTGC
*
90052026 TCCCCGTCTAATACAGAGACGCCAA
64 TCCCCGTCTAATACAGAGATGCCAA
* * * * * *
90052051 ATCTGCTTCTTCAATCTGCTCCCCGTCTAATACATAGATGCCAAATTTTTTATC-TCTGATTTGC
1 ATCTGCTTCTTCGATCTGCT-CCCGTCTAATACACAGACGCCAAATCTGTTATCTTC-GATCTGC
90052115 TCCCCGTCTAATACAGAGATGCCAA
64 TCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
90052140 ATCTGTCATCTTGGATCTGCT-TCGATGTAA-ACACATGAAGGTCAGATCTGCTATGTCTTCGAT
1 ATCTG-CTTCTTCGATCTGCTCCCG-TCTAATACACA-G-ACGCCAAATCTG-T-TATCTTCGAT
90052203 CTGCTCCCCGTCTAATACAGAGATGCCAA
60 CTGCTCCCCGTCTAATACAGAGATGCCAA
90052232 ATC
1 ATC
90052235 ATCTTGGATC
Statistics
Matches: 154, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
88 8 0.05
89 79 0.51
90 27 0.18
91 1 0.01
92 37 0.24
93 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (88 bp):
ATCTGCTTCTTCGATCTGCTCCCGTCTAATACACAGACGCCAAATCTGTTATCTTCGATCTGCTC
CCCGTCTAATACAGAGATGCCAA
Found at i:90052260 original size:62 final size:62
Alignment explanation
Indices: 90052191--90052315 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 62
90052181 TCAGATCTGC
90052191 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
1 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
*
90052253 TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
1 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
90052315 T
1 T
90052316 GAAGGTCAGA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (62 bp):
TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAA
Found at i:90052384 original size:78 final size:78
Alignment explanation
Indices: 90052253--90052452 Score: 292
Period size: 78 Copynumber: 2.6 Consensus size: 78
90052243 TCTGCTTCAA
* * * *
90052253 TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
1 TATGTCTTCGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCACCTTGGATCTACTTCAATGA
* *
90052318 AGGTCAGATTTGC
66 AGGTCAGATCTAC
*
90052331 TGTGTCTTCGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCACCTTGGATCTACTTCAATGA
1 TATGTCTTCGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCACCTTGGATCTACTTCAATGA
90052396 AGGTCAGATCTAC
66 AGGTCAGATCTAC
* * * **
90052409 TATGTCTTCGATCTGCTCTCTGTCGAATATGGAGATGCCAAATC
1 TATGTCTTCGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATC
90052453 TGTTTCTTCG
Statistics
Matches: 109, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 109 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
TATGTCTTCGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCACCTTGGATCTACTTCAATGA
AGGTCAGATCTAC
Found at i:90052831 original size:87 final size:87
Alignment explanation
Indices: 90052677--90053325 Score: 858
Period size: 87 Copynumber: 7.4 Consensus size: 87
90052667 AAATCTGTTA
* * * * *
90052677 TCTTTGATCTGCTCTCTGACAATACAGAAACGCCAAATCATCTTAGATTTGCTTCAACGTAAGCA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
90052742 CGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* *
90052764 TCTTCGATCTACTCCCTTCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
90052829 CGTGAAAACCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* *
90052851 TCCTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
90052916 AGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
*
90052938 TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
90053003 AGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* *
90053025 TCTTCGATCTGCTCCCTGCCAATACAGAGACACCAAATCATCTTAGATTTGCTTCAATGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
90053090 CGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* * * * * * * * ** *
90053112 TCCTCGATTTGCTCCCTACCAATATAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGC-C
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAA--T-C-ATCTTAGATTTGCT-TCAACGT
* * * *
90053176 AATACA-GAG-ATGCCAAATCTG-T-TA
61 AA-ACACGTGAAAGCCAAATCAGCTATG
* * * *
90053200 TCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
* *
90053265 TGTGAAAGCCAAATCAGTTATG
66 CGTGAAAGCCAAATCAGCTATG
* * *
90053287 TCTTCGATCTGCTCTCTGCTAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
90053326 TGTTATCTTC
Statistics
Matches: 493, Mismatches: 58, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
83 6 0.01
84 15 0.03
85 11 0.02
86 2 0.00
87 396 0.80
88 30 0.06
89 2 0.00
90 11 0.02
91 15 0.03
92 5 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (87 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
CGTGAAAGCCAAATCAGCTATG
Found at i:90052991 original size:261 final size:261
Alignment explanation
Indices: 90052659--90053325 Score: 948
Period size: 261 Copynumber: 2.6 Consensus size: 261
90052649 GTCAAATATG
* * *
90052659 GAGATGCCAAATCTGTTATCTTTGATCTGCTCTCTGACAATACAGAAACGCCAAATCATCTTAGA
1 GAGAAGCCAAATCAGTTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGA
* * * *
90052724 TTTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATCTACTCCCTTCCAATAC
66 TTTGCTTCAACGTAAACAAGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATAC
90052789 AGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCAGCTATGTCC
131 AGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCAGCTATGTCC
* * *
90052854 TCGATCTGCTCCCTGCCAATACAGAGATGCCAAA-T-C-ATCTTAGATTTGCT-TCAACGTAA-A
196 TCGATCTGCTCCCTACCAATACAGAGATGCCAAACTGCTATCTTAGATCTGCTCTCAAC-CAATA
90052914 CAA
260 C-A
* * * * * *
90052917 GTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCATCTT
1 GAG-AAGCCAAATCAG-T-TATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTT
90052982 AGATTTGCTTCAACGTAAACAAGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAA
63 AGATTTGCTTCAACGTAAACAAGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAA
* * *
90053047 TACAGAGACACCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCTATG
128 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCAGCTATG
* * * * **
90053112 TCCTCGATTTGCTCCCTACCAATATAGAGATGCCAAATCTGCTGTCTTCGATCTGCTCTCTGCCA
193 TCCTCGATCTGCTCCCTACCAATACAGAGATGCCAAA-CTGCTATCTTAGATCTGCTCTCAACCA
90053177 ATACA
257 ATACA
* * *
90053182 GAGATGCCAAATCTGTTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTGGA
1 GAGAAGCCAAATCAGTTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGA
* * * *
90053247 TTTGCTTCAACGTAAACATGTGAAAGCCAAATCAGTTATGTCTTCGATCTGCTCTCTGCTAATAC
66 TTTGCTTCAACGTAAACAAGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATAC
*
90053312 AGAGATGCCAAATC
131 AGAGACGCCAAATC
90053326 TGTTATCTTC
Statistics
Matches: 360, Mismatches: 40, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
258 2 0.01
259 10 0.03
260 1 0.00
261 197 0.55
262 116 0.32
263 2 0.01
264 11 0.03
265 16 0.04
266 5 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (261 bp):
GAGAAGCCAAATCAGTTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGA
TTTGCTTCAACGTAAACAAGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATAC
AGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCAGCTATGTCC
TCGATCTGCTCCCTACCAATACAGAGATGCCAAACTGCTATCTTAGATCTGCTCTCAACCAATAC
A
Found at i:90053169 original size:44 final size:44
Alignment explanation
Indices: 90053097--90053413 Score: 256
Period size: 44 Copynumber: 7.2 Consensus size: 44
90053087 ACACGTGAAA
* * * * *
90053097 GCCAAATCAGCTATGTCCTCGATTTGCTCCCTACCAATATAGAGAT
1 GCCAAATCTGCTA--TCTTCGATCTGCTCTCTACCAATACAGAGAT
* *
90053143 GCCAAATCTGCTGTCTTCGATCTGCTCTCTGCCAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTACCAATACAGAGAT
* * *
90053187 GCCAAATCTGTTATCTTTGATCTGCTCTCTGA-CAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCT-ACCAATACAGAGAT
* * * * * *
90053231 GCCAAA--T-C-ATCTTGGATTTGCT-TCAACGTAA-ACATGTGAAA
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTAC-CAATACA-GAG-AT
* * * *
90053272 GCCAAATCAGTTATGTCTTCGATCTGCTCTCTGCTAATACAGAGAT
1 GCCAAATCTGCTA--TCTTCGATCTGCTCTCTACCAATACAGAGAT
* *
90053318 GCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTACCAATACAGAGAT
* * *
90053362 GCCAAATCTG-TCATCTTTGATCTGCTCCCTGA-CAATACAGAGAC
1 GCCAAATCTGCT-ATCTTCGATCTGCTCTCT-ACCAATACAGAGAT
90053406 GCCAAATC
1 GCCAAATC
90053414 ATCTTGGATC
Statistics
Matches: 223, Mismatches: 33, Indels: 32
0.77 0.11 0.11
Matches are distributed among these distances:
38 1 0.00
39 5 0.02
40 16 0.07
41 7 0.03
42 1 0.00
43 1 0.00
44 145 0.65
45 1 0.00
46 24 0.11
47 16 0.07
48 6 0.03
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTACCAATACAGAGAT
Found at i:90053264 original size:175 final size:171
Alignment explanation
Indices: 90052632--90053428 Score: 918
Period size: 174 Copynumber: 4.6 Consensus size: 171
90052622 ATCTGCTATG
* * ** *
90052632 TCTTCGATCTGCTATCCGTCAAATATGGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCTGAC
1 TCTTCGATCTGCT-TCAG-CCAATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCCCTGAC
* *
90052697 AATACAGAAACGCCAAATCATCTTAGATTTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTA
64 AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
* * *
90052762 TGTCTTCGATCTACTCCCTTCCAATACAGAGACGCCAAATC-A
129 TGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTA
* * * * * ** * * * *
90052804 TCTTAGATTTGCTTCAACGTAA-ACACGTGAAAACCAAATCAGCTATGTCCTCGATCTGCTCCCT
1 TCTTCGATCTGCTTCAGC-CAATACA-GAG-ATGCCAAATCTG-T-TATCTTTGATCTGCTCCCT
* * *
90052868 GCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAAGCCAAATCAG
61 GACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAG
90052933 CTATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATC-A
126 CTATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTA
* * * * * * * * *
90052978 TCTTAGATTTGCTTCAACGTAA-ACAAGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCT
1 TCTTCGATCTGCTTCAGC-CAATAC-AGAG-ATGCCAAATCTG-T-TATCTTTGATCTGCTCCCT
* * *
90053042 GCCAATACAGAGACACCAAATCATCTTAGATTTGCTTCAATGTAAACACGTGAAAGCCAAATCAG
61 GACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAG
* * * * *
90053107 CTATGTCCTCGATTTGCTCCCTACCAATATAGAGATGCCAAATCTGCTG
126 CTATGTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAA--T-CTA
* *
90053156 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCTGACA
1 TCTTCGATCTGCT-TCAGCCAATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCCCTGACA
* * *
90053221 ATACAGAGACGCCAAATCATCTTGGATTTGCTTCAACGTAAACATGTGAAAGCCAAATCAGTTAT
65 ATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTAT
* *
90053286 GTCTTCGATCTGCTCTCTGCTAATACAGAGATGCCAAATCTGTTA
130 GTCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATC---TA
* *
90053331 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCCCTGACA
1 TCTTCGATCTGCT-TCAGCCAATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCCCTGACA
* *
90053396 ATACAGAGACGCCAAATCATCTTGGATCTGCTT
65 ATACAGAGACGCCAAATCATCTTAGATTTGCTT
90053429 TAGTGTAAAT
Statistics
Matches: 549, Mismatches: 61, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
170 2 0.00
171 6 0.01
172 21 0.04
173 2 0.00
174 276 0.50
175 208 0.38
176 2 0.00
177 11 0.02
178 16 0.03
179 5 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (171 bp):
TCTTCGATCTGCTTCAGCCAATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCCCTGACAA
TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATCTA
Found at i:90054394 original size:6 final size:6
Alignment explanation
Indices: 90054383--90054441 Score: 61
Period size: 6 Copynumber: 9.7 Consensus size: 6
90054373 GGCCTCTCCA
90054383 TTTTTC TTTTTC TTTTTTTC TTTTT- TTTTCTC TTTTTC -TTTTC TTTTTCC
1 TTTTTC TTTTTC --TTTTTC TTTTTC TTTT-TC TTTTTC TTTTTC TTTTT-C
90054433 TTTTT- TTTT
1 TTTTTC TTTT
90054442 GAAATAGAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
5 13 0.28
6 18 0.38
7 10 0.21
8 6 0.13
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:90054409 original size:11 final size:11
Alignment explanation
Indices: 90054395--90054430 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
90054385 TTTCTTTTTC
90054395 TTTTTTTCTTT
1 TTTTTTTCTTT
90054406 TTTTTTCTCTTT
1 TTTTTT-TCTTT
*
90054418 TTCTTTTCTTT
1 TTTTTTTCTTT
90054429 TT
1 TT
90054431 CCTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:90054412 original size:18 final size:19
Alignment explanation
Indices: 90054384--90054439 Score: 87
Period size: 18 Copynumber: 2.9 Consensus size: 19
90054374 GCCTCTCCAT
90054384 TTTTCTTTTTCTTTTTTTC
1 TTTTCTTTTTCTTTTTTTC
*
90054403 TTTT-TTTTTCTCTTTTTC
1 TTTTCTTTTTCTTTTTTTC
90054421 TTTTCTTTTTCCTTTTTTT
1 TTTTCTTTTT-CTTTTTTT
90054440 TTGAAATAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 17 0.52
19 9 0.27
20 7 0.21
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTCTTTTTCTTTTTTTC
Found at i:90054428 original size:31 final size:31
Alignment explanation
Indices: 90054383--90054441 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
90054373 GGCCTCTCCA
*
90054383 TTTTTCTTTTTCTTTTTTTCTTTTTTTTTCTC
1 TTTTTCTTTTTC-TTTTTCCTTTTTTTTTCTC
90054415 TTTTTC-TTTTCTTTTTCCTTTTTTTTT
1 TTTTTCTTTTTCTTTTTCCTTTTTTTTT
90054442 GAAATAGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 15 0.58
31 5 0.19
32 6 0.23
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (31 bp):
TTTTTCTTTTTCTTTTTCCTTTTTTTTTCTC
Found at i:90059957 original size:22 final size:21
Alignment explanation
Indices: 90059922--90060051 Score: 68
Period size: 19 Copynumber: 6.7 Consensus size: 21
90059912 ATTATGTATC
* *
90059922 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
90059943 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
90059966 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
90059985 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
90060003 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
90060020 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
90060039 TGC-AATCATATCT
1 TACAAATCATATCT
90060052 AAGATTGTAT
Statistics
Matches: 94, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
17 15 0.16
18 21 0.22
19 29 0.31
20 1 0.01
21 3 0.03
22 15 0.16
23 10 0.11
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:90059965 original size:23 final size:22
Alignment explanation
Indices: 90059922--90059979 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
90059912 ATTATGTATC
* *
90059922 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
90059943 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
90059966 TGCATATCATATCT
1 TACAAATCATATCT
90059980 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:90060026 original size:54 final size:54
Alignment explanation
Indices: 90059958--90060102 Score: 281
Period size: 54 Copynumber: 2.7 Consensus size: 54
90059948 AATCATATCT
90059958 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
90060012 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
90060066 TCTAAGATTGCATATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
90060103 TGAAGATTAT
Statistics
Matches: 90, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
54 85 0.94
55 5 0.06
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:90060039 original size:73 final size:71
Alignment explanation
Indices: 90059951--90060103 Score: 247
Period size: 73 Copynumber: 2.1 Consensus size: 71
90059941 ATTACAAAAT
90059951 CATATC-TTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTG-TATCATATC
1 CATATCATTCTAAGATTGCA-ATCATATCTAAGATTG-AATCATATCTAAGATTGATATCATATC
90060014 TAAGATTG
64 TAAGATTG
*
90060022 CATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGCATATCATATC
1 CATATCAT-TCTAAGATTGCAATCATATCTAAGATTGAATCATATCTAAGATTG-ATATCATATC
90060087 TAAGATTG
64 TAAGATTG
90060095 CATATCATT
1 CATATCATT
90060104 GAAGATTATA
Statistics
Matches: 77, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
71 22 0.29
72 18 0.23
73 37 0.48
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCAATCATATCTAAGATTGAATCATATCTAAGATTGATATCATATCTA
AGATTG
Found at i:90060110 original size:17 final size:19
Alignment explanation
Indices: 90059958--90060102 Score: 248
Period size: 19 Copynumber: 7.9 Consensus size: 19
90059948 AATCATATCT
90059958 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
90059977 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
90059995 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
90060012 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
90060031 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
90060049 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
90060066 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
90060085 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
90060103 TGAAGATTAT
Statistics
Matches: 120, Mismatches: 0, Indels: 12
0.91 0.00 0.09
Matches are distributed among these distances:
17 32 0.27
18 32 0.27
19 56 0.47
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:90071760 original size:29 final size:29
Alignment explanation
Indices: 90071721--90071799 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
90071711 CTTAATAATC
*
90071721 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
90071751 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
90071780 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
90071800 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:90072935 original size:17 final size:18
Alignment explanation
Indices: 90072898--90072935 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
90072888 CACTTTTTTT
90072898 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
90072917 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
90072934 TT
1 TT
90072936 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:90079554 original size:29 final size:29
Alignment explanation
Indices: 90079515--90079593 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
90079505 CTTAATAATC
*
90079515 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
90079545 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
90079574 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
90079594 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:90082863 original size:163 final size:164
Alignment explanation
Indices: 90082581--90082911 Score: 538
Period size: 163 Copynumber: 2.0 Consensus size: 164
90082571 TCTTCTAGGC
*
90082581 TTATATTTTTTATTAAAATATTCTTTCTTTAAAGTACTTTTATGGTCTCTCCATTTCTTTCCTAA
1 TTATATTTTTTATTAAAATATTCCTTCTTTAAAGTACTTTTATGGTCTCTCCATTTCTTTCCTAA
* * *
90082646 TGCATTCTTTACATAATTATCCGAAACCTTTAAAGCAGACCTCTCCTGCAAATAACACAAGTTTA
66 TGCATTCTTCACATAATTATCCGAAACCTCTAAAGCAAACCTCTCCTGCAAATAACACAAGTTTA
* **
90082711 GAAAGTAAATATAAATGAAACTTAAAGGAAAGTA
131 AAAAGTAAATATAAATGAAACTTAAACCAAAGTA
*
90082745 TTATA-TTTTTCTTAAAATATTCCTTCTTTAAAGTACTTTTATGGTCTCTCCATTTCTTTCCTAA
1 TTATATTTTTTATTAAAATATTCCTTCTTTAAAGTACTTTTATGGTCTCTCCATTTCTTTCCTAA
* * * * *
90082809 TGCCTTCTTCATATAATTATCCGAGACCTCTAAAGCAAATCTCTTCTGCAAATAACACAAGTTTA
66 TGCATTCTTCACATAATTATCCGAAACCTCTAAAGCAAACCTCTCCTGCAAATAACACAAGTTTA
90082874 AAAAGTAAATATAAATGAAACTTAAACCAAAGTA
131 AAAAGTAAATATAAATGAAACTTAAACCAAAGTA
90082908 TTAT
1 TTAT
90082912 GAATTACATT
Statistics
Matches: 154, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
163 149 0.97
164 5 0.03
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.39
Consensus pattern (164 bp):
TTATATTTTTTATTAAAATATTCCTTCTTTAAAGTACTTTTATGGTCTCTCCATTTCTTTCCTAA
TGCATTCTTCACATAATTATCCGAAACCTCTAAAGCAAACCTCTCCTGCAAATAACACAAGTTTA
AAAAGTAAATATAAATGAAACTTAAACCAAAGTA
Found at i:90087293 original size:40 final size:39
Alignment explanation
Indices: 90087128--90087311 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
90087118 AAATTGAATG
* * *
90087128 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
90087168 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
90087208 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
90087248 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
90087287 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
90087312 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:90087336 original size:80 final size:81
Alignment explanation
Indices: 90087168--90087356 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
90087158 GCTGGAAATT
* * * *
90087168 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
90087233 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
90087249 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
90087312 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
90087328 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
90087357 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:90095384 original size:40 final size:40
Alignment explanation
Indices: 90095329--90095498 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
90095319 AACATTGGAA
90095329 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90095369 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
90095409 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
90095448 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
90095489 CTATATCCGG
1 ATATATCCGG
90095499 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:90098244 original size:25 final size:25
Alignment explanation
Indices: 90098210--90098259 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
90098200 TTTCTGAGCT
90098210 TCACAAATTTGCTGAAGAAATACTG
1 TCACAAATTTGCTGAAGAAATACTG
90098235 TCACAAATTTGCTGAAGAAATACTG
1 TCACAAATTTGCTGAAGAAATACTG
90098260 GTTTAGCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (25 bp):
TCACAAATTTGCTGAAGAAATACTG
Found at i:90102459 original size:6 final size:6
Alignment explanation
Indices: 90102441--90102540 Score: 80
Period size: 6 Copynumber: 16.3 Consensus size: 6
90102431 AAGAAACATT
* *
90102441 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGA ATTAGA ATCA-A
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
90102488 GTGACAGA ATCAGA ATCAGA ATCAGT ATCGGGTA A-CAGA ATCAAA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA
90102539 AT
1 AT
90102541 GTGAATGCAA
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
5 5 0.07
6 63 0.83
7 5 0.07
8 3 0.04
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:90102526 original size:31 final size:31
Alignment explanation
Indices: 90102441--90102540 Score: 98
Period size: 31 Copynumber: 3.3 Consensus size: 31
90102431 AAGAAACATT
90102441 ATCAGAA-CTAGAATC-AG-AATCAGAATCAGA
1 ATCAGAATC-AGAATCAAGTAA-CAGAATCAGA
* * *
90102471 ATTAGAATTAGAATCAAGTGACAGAATCAGA
1 ATCAGAATCAGAATCAAGTAACAGAATCAGA
* ** *
90102502 ATCAGAATCAGTATCGGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAAGTAACAGAATCAGA
90102533 ATCAGAAT
1 ATCAGAAT
90102541 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
30 12 0.21
31 44 0.77
32 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
ATCAGAATCAGAATCAAGTAACAGAATCAGA
Found at i:90103006 original size:27 final size:27
Alignment explanation
Indices: 90102935--90103100 Score: 221
Period size: 27 Copynumber: 6.3 Consensus size: 27
90102925 GAGGCAAAAT
* *
90102935 GGTAATTTTACCC-ACAAGGGTA-CTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
90102960 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
90102987 GGT-ATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
90103013 GATAATTTTAACCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
90103040 AGTAATTCTACCCTACAAGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
90103067 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
90103094 GGTAATT
1 GGTAATT
90103101 TCACAAATCA
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
25 12 0.10
26 31 0.26
27 78 0.64
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:90103116 original size:54 final size:53
Alignment explanation
Indices: 90102960--90103181 Score: 173
Period size: 54 Copynumber: 4.1 Consensus size: 53
90102950 AAGGGTACTC
* *
90102960 GGTAATTCTACCCTACAGGGGTATTTCGGT-ATTCTATC-CTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-CAAT-CAAGGGTATTTA
* * * * **
90103013 GATAATTTTAACCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACAAT-CAAGGGTATTTA
* * *
90103067 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT-TCACAAATCAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCT-AC-AATCAAGGGTATTTA
* ** * * ** * *
90103121 GGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTT
1 GGTAATTCTACCCTA-CAGGGGTATTTCGGTAATTCTA-CAATCAAGGGTATTTA
90103175 GGTAATT
1 GGTAATT
90103182 TTGTAAACCA
Statistics
Matches: 139, Mismatches: 23, Indels: 13
0.79 0.13 0.07
Matches are distributed among these distances:
53 30 0.22
54 107 0.77
55 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (53 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACAATCAAGGGTATTTA
Found at i:90103126 original size:81 final size:80
Alignment explanation
Indices: 90102958--90103127 Score: 234
Period size: 81 Copynumber: 2.1 Consensus size: 80
90102948 ACAAGGGTAC
* * * *
90102958 TCGGTAATTCTACCCTACAGGGGTATTTCGGTATTCTATCCTACAAGGGTATTTCGATAATTTTA
1 TCGGTAATTCTACCCTACAAGGGTATTTAGGTATTCTACCCTACAAGGGTATTTCGATAATTTCA
**
90103023 ACCTACAGGGGTATT
66 AAATACAGGGGTATT
* *
90103038 TCAGTAATTCTACCCTACAAGGGTATTTAGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTC
1 TCGGTAATTCTACCCTACAAGGGTATTTAGGT-ATTCTACCCTACAAGGGTATTTCGATAATTTC
90103103 ACAAAT-CAGGGGTATT
65 A-AAATACAGGGGTATT
*
90103119 TTGGTAATT
1 TCGGTAATT
90103128 TTACAAACCA
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 29 0.37
81 47 0.60
82 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (80 bp):
TCGGTAATTCTACCCTACAAGGGTATTTAGGTATTCTACCCTACAAGGGTATTTCGATAATTTCA
AAATACAGGGGTATT
Found at i:90103143 original size:81 final size:81
Alignment explanation
Indices: 90102961--90103154 Score: 214
Period size: 81 Copynumber: 2.4 Consensus size: 81
90102951 AGGGTACTCG
** * * * *
90102961 GTAATTCTACCCTACAGGGGTATTTCGGT-ATTCTATCCTACAAGGGTATTTCGATAATTTTAAC
1 GTAATTCTACCAAACAGGGGTATTTAGGTAATTCTACCCTACAAGGGTATTTCGATAATTTCAAA
*
90103025 CTACAGGGGTATTTCA
66 ATACAGGGGTATTTCA
** * *
90103041 GTAATTCTACCCTACAAGGGTATTTAGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCACA
1 GTAATTCTACCAAACAGGGGTATTTAGGTAATTCTACCCTACAAGGGTATTTCGATAATTTCA-A
**
90103106 AAT-CAGGGGTATTTTG
65 AATACAGGGGTATTTCA
* *
90103122 GTAATTTTA-CAAACCAGGGGTATTTTGGTAATT
1 GTAATTCTACCAAA-CAGGGGTATTTAGGTAATT
90103155 TTATTGATCG
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 29 0.30
81 66 0.68
82 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCAAACAGGGGTATTTAGGTAATTCTACCCTACAAGGGTATTTCGATAATTTCAAA
ATACAGGGGTATTTCA
Found at i:90103224 original size:81 final size:81
Alignment explanation
Indices: 90103174--90103359 Score: 275
Period size: 81 Copynumber: 2.3 Consensus size: 81
90103164 GAGGGTATTT
*** *
90103174 TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTA
1 TGGTAATTTTGTAAACCAAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
90103239 GAAATCGAGGGTAAAA
66 GAAATCGAGGGTAAAA
*
90103255 TGGTAATTTTGTAAATCAAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
1 TGGTAATTTTGTAAACCAAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
*
90103320 TAAATCGA-GGTAAAA
66 GAAATCGAGGGTAAAA
** * *
90103335 CAGTAATTCTGTAAATCAAGGGTAA
1 TGGTAATTTTGTAAACCAAGGGTAA
90103360 AATGGTAATT
Statistics
Matches: 96, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 29 0.30
81 67 0.70
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
TGGTAATTTTGTAAACCAAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
GAAATCGAGGGTAAAA
Found at i:90103519 original size:27 final size:27
Alignment explanation
Indices: 90103084--90103532 Score: 218
Period size: 27 Copynumber: 16.7 Consensus size: 27
90103074 CTACCCTACA
*
90103084 AGGGTATTTCGGTAATTTCACAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
90103110 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
* ***
90103137 AGGGGTATTTTGGTAATTTTATTGATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
* ** * *
90103165 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* **
90103192 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** * *
90103219 AGGGTAAAAT-GGTAATTCTAGAAATCG
1 AGGGT-ATTTCGGTAATTTTACAAATCG
** ** *
90103246 AGGGTAAAAT-GGTAATTTTGTAAATCA
1 AGGGT-ATTTCGGTAATTTTACAAATCG
*** * * **
90103273 AGGGTAAGACAGTAATTCTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** * *
90103300 AGGGTAAAAT-GGTAATTCTATAAATCG
1 AGGGT-ATTTCGGTAATTTTACAAATCG
*** * * ** *
90103327 A-GGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
** * **
90103353 AGGGTAAAAT-GGTAATTCTATCTTA-C-
1 AGGGT-ATTTCGGTAATTTTA-CAAATCG
*
90103379 AGGAGTATTTCAGTAATTTTACAAATCG
1 AGG-GTATTTCGGTAATTTTACAAATCG
*
90103407 AGGGTATTTCAGTAATTTTACAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
90103434 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
90103461 AGGATATTTGGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
90103488 GGGGTACTTT-GGTAATTTTACAAGTTG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
*
90103515 AGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
90103533 GGTAAACTAA
Statistics
Matches: 344, Mismatches: 61, Indels: 35
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.01
26 33 0.10
27 291 0.85
28 17 0.05
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:90105217 original size:24 final size:24
Alignment explanation
Indices: 90105186--90105231 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
90105176 CCTAGCTCAT
90105186 AAAAATGCAAATTCATGCAATTCA
1 AAAAATGCAAATTCATGCAATTCA
90105210 AAAAATGCAAATTCATGCAATT
1 AAAAATGCAAATTCATGCAATT
90105232 AAACTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (24 bp):
AAAAATGCAAATTCATGCAATTCA
Found at i:90108009 original size:28 final size:28
Alignment explanation
Indices: 90107940--90108040 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
90107930 GACAAGATTG
* * * *
90107940 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
90107970 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
90107998 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
90108027 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
90108041 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:90113274 original size:20 final size:20
Alignment explanation
Indices: 90113245--90113298 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
90113235 TTTAGCTCTC
* *
90113245 ATGAGCTTCAGTTAACTCAT
1 ATGAGTTTCAGTTAACCCAT
* *
90113265 ATGAGTTTCATTTTAACCCTT
1 ATGAGTTTCA-GTTAACCCAT
*
90113286 CTGAGTTTCAGTT
1 ATGAGTTTCAGTT
90113299 TAGCTCTTCT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 11 0.41
21 16 0.59
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.43
Consensus pattern (20 bp):
ATGAGTTTCAGTTAACCCAT
Found at i:90113290 original size:21 final size:21
Alignment explanation
Indices: 90113266--90113336 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 21
90113256 TTAACTCATA
*
90113266 TGAGTTTCATTTTAACCCTTC
1 TGAGTTTCAATTTAACCCTTC
* * *
90113287 TGAGTTTCAGTTTAGCTCTTC
1 TGAGTTTCAATTTAACCCTTC
* * * *
90113308 TAAGCTTCAAATTAACCCTTG
1 TGAGTTTCAATTTAACCCTTC
*
90113329 TGGGTTTC
1 TGAGTTTC
90113337 CGTTCAGCTC
Statistics
Matches: 37, Mismatches: 13, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (21 bp):
TGAGTTTCAATTTAACCCTTC
Found at i:90113365 original size:42 final size:42
Alignment explanation
Indices: 90113271--90113378 Score: 108
Period size: 42 Copynumber: 2.6 Consensus size: 42
90113261 TCATATGAGT
* * * * *
90113271 TTCATTTTAACCCTTCTGAGTTTCAGTTTAGCTCTTCTAAGC
1 TTCAATTTAACCCTTATGGGTTTCAGTTCAGCTCTTCTAAGA
* * * *
90113313 TTCAAATTAACCCTTGTGGGTTTCCGTTCAGCTCTTCTGAGA
1 TTCAATTTAACCCTTATGGGTTTCAGTTCAGCTCTTCTAAGA
** *
90113355 TTCTGTTTAACCCTTACGGGTTTC
1 TTCAATTTAACCCTTATGGGTTTC
90113379 TTTTAGCACT
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.43
Consensus pattern (42 bp):
TTCAATTTAACCCTTATGGGTTTCAGTTCAGCTCTTCTAAGA
Found at i:90116145 original size:40 final size:40
Alignment explanation
Indices: 90115906--90116131 Score: 323
Period size: 40 Copynumber: 5.7 Consensus size: 40
90115896 TCGAATGATG
* * * *
90115906 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
90115946 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
90115986 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
90116026 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
90116066 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
90116107 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
90116132 AACGAGTAGC
Statistics
Matches: 172, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 161 0.94
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:90121229 original size:40 final size:40
Alignment explanation
Indices: 90121184--90121313 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
90121174 CGGAATACAA
90121184 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
90121224 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
90121264 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
90121304 CCGGATATAA
1 CCGGATATAA
90121314 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:90121328 original size:40 final size:40
Alignment explanation
Indices: 90121184--90121347 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
90121174 CGGAATACAA
* **
90121184 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
90121224 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
90121264 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
90121304 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
90121344 CCGG
1 CCGG
90121348 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:90127568 original size:78 final size:79
Alignment explanation
Indices: 90127418--90127641 Score: 321
Period size: 78 Copynumber: 2.8 Consensus size: 79
90127408 TCGAATGATG
* * * *
90127418 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-CTAAG-TCCCGAAGGCAT
90127481 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
*
90127498 TCCGGGTTAAGTCCCGAAGGCATTTGT-CGAGTTACTAAATCCGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGCTAAGTCCCGAAGGCATTTG
90127562 TGCGAGTTACTAAA
66 TGCGAGTTACTAAA
*
90127576 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGCTAAGTCCCGAAGGCATT
90127640 TG
64 TG
90127642 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
77 1 0.01
78 58 0.44
79 25 0.19
80 43 0.33
81 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:90127633 original size:118 final size:119
Alignment explanation
Indices: 90127425--90127664 Score: 328
Period size: 118 Copynumber: 2.0 Consensus size: 119
90127415 ATGTCCGGGC
*
90127425 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
* *
90127490 TTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG-TCGAGTTA-CTAAATCCGGT
66 TTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCCGGT
* * **
90127543 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
* *
90127606 AGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGT
64 AGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGT
90127662 TAA
1 TAA
90127665 ACTCCGAAGG
Statistics
Matches: 108, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
117 1 0.01
118 81 0.75
119 26 0.24
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGT
Found at i:90127655 original size:40 final size:40
Alignment explanation
Indices: 90127418--90127641 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
90127408 TCGAATGATG
* * * *
90127418 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
90127458 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
90127498 TCCGGGTTAAGTCCCGAAGGCATTTGT-CGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
90127537 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
90127576 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
90127617 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
90127642 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 8, Indels: 12
0.89 0.04 0.06
Matches are distributed among these distances:
38 23 0.14
39 31 0.18
40 106 0.62
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:90131908 original size:29 final size:28
Alignment explanation
Indices: 90131838--90131912 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
90131828 ATACTCGATT
* *
90131838 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
90131866 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
90131895 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
90131913 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:90131929 original size:29 final size:29
Alignment explanation
Indices: 90131896--90131969 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
90131886 CCTTCGAGCT
90131896 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
90131925 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
90131954 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
90131970 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:90139783 original size:29 final size:28
Alignment explanation
Indices: 90139713--90139787 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
90139703 ATACTCGATT
* *
90139713 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
90139741 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
90139770 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
90139788 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:90139804 original size:29 final size:29
Alignment explanation
Indices: 90139771--90139844 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
90139761 CCTTCGAGCT
90139771 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
90139800 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
90139829 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
90139845 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:90155192 original size:40 final size:40
Alignment explanation
Indices: 90155099--90155249 Score: 130
Period size: 40 Copynumber: 3.8 Consensus size: 40
90155089 ATAACCATGT
* * * *
90155099 GCACAAATGCCTTTGGGTCTTAGCCCGGATAGAATGTCTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
90155139 GCACGAATT-CCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
90155179 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
90155219 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
90155250 TCATTCAATT
Statistics
Matches: 90, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
38 1 0.01
39 6 0.07
40 78 0.87
41 5 0.06
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:90155233 original size:80 final size:80
Alignment explanation
Indices: 90155099--90155248 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
90155089 ATAACCATGT
* *
90155099 GCACAAATGCCTTTGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATTCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATTCCTTCGGGAT-TTAGC
90155163 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
90155179 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAATT-CCTTCGGGATTTAG
90155242 CCCGGAT
64 CCCGGAT
90155249 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 5 0.08
80 54 0.90
81 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATTCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:90164654 original size:40 final size:40
Alignment explanation
Indices: 90164599--90164848 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
90164589 AACATTGGAA
90164599 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90164639 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90164679 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90164719 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
90164759 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
90164798 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
90164839 CTATATCCGG
1 ATATATCCGG
90164849 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:90172826 original size:40 final size:40
Alignment explanation
Indices: 90172771--90172980 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
90172761 AACATTGGAA
90172771 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90172811 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
90172851 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
90172891 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
90172930 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
90172971 CTATATCCGG
1 ATATATCCGG
90172981 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:90179096 original size:20 final size:20
Alignment explanation
Indices: 90179060--90179097 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
90179050 ATATCAAATG
*
90179060 TGTACCCAACATTAGTTGGA
1 TGTACCCAACATGAGTTGGA
90179080 TGTA-CCAACAATGAGTTG
1 TGTACCCAAC-ATGAGTTG
90179098 CATCCAGCGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (20 bp):
TGTACCCAACATGAGTTGGA
Done.