Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 306 of 328
Found at i:91059757 original size:24 final size:24
Alignment explanation
Indices: 91059724--91059779 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
91059714 ACTTGCAGAA
*
91059724 GCAGCAGCTCTTTGTCGAGCCTCT
1 GCAGCAGCTCTTTCTCGAGCCTCT
*
91059748 GCAGCTGCTCTTTCTCGAGCCTCT
1 GCAGCAGCTCTTTCTCGAGCCTCT
91059772 GCAGCAGC
1 GCAGCAGC
91059780 CCTCTCCACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.12, C:0.36, G:0.25, T:0.27
Consensus pattern (24 bp):
GCAGCAGCTCTTTCTCGAGCCTCT
Found at i:91062106 original size:15 final size:15
Alignment explanation
Indices: 91062086--91062115 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
91062076 TAGTTTCAAG
91062086 TTCATTACAACATAC
1 TTCATTACAACATAC
91062101 TTCATTACAACATAC
1 TTCATTACAACATAC
91062116 AGACTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (15 bp):
TTCATTACAACATAC
Found at i:91067457 original size:17 final size:17
Alignment explanation
Indices: 91067399--91067457 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
91067389 TAATAAATTT
91067399 AAAATATAA-TATATAA
1 AAAATATAATTATATAA
91067415 TAAAA-ATATATT-TAT-A
1 -AAAATATA-ATTATATAA
*
91067431 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
91067449 AAAATATAA
1 AAAATATAA
91067458 AATATATTCG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 3 0.09
16 7 0.21
17 18 0.53
18 6 0.18
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:91067975 original size:17 final size:18
Alignment explanation
Indices: 91067955--91068100 Score: 219
Period size: 17 Copynumber: 8.3 Consensus size: 18
91067945 AAAATTGTAT
91067955 ATCATATCTAAG-TTGCA
1 ATCATATCTAAGATTGCA
*
91067972 ATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCA
91067989 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGCA
*
91068007 ATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCA
91068024 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGCA
91068042 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGCA
*
91068060 ATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCA
*
91068077 ATCATATCGAAGATTGCAA
1 ATCATATCTAAGATTGC-A
91068096 ATCAT
1 ATCAT
91068101 TGAAGATTAT
Statistics
Matches: 117, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
17 59 0.50
18 53 0.45
19 5 0.04
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
ATCATATCTAAGATTGCA
Found at i:91068013 original size:35 final size:35
Alignment explanation
Indices: 91067954--91068092 Score: 228
Period size: 35 Copynumber: 4.0 Consensus size: 35
91067944 TAAAATTGTA
91067954 TATCATATCTAAG-TTGCAATCATATCTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
91067988 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
91068023 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
* * *
91068058 CAATCATATCTAAGATTG-TATCATATCGAAGATTG
1 -TATCATATCTAAGATTGCAATCATATCTAAGATTG
91068093 CAAATCATTG
Statistics
Matches: 100, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
34 13 0.13
35 71 0.71
36 16 0.16
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TATCATATCTAAGATTGCAATCATATCTAAGATTG
Found at i:91068069 original size:53 final size:53
Alignment explanation
Indices: 91067955--91068100 Score: 233
Period size: 53 Copynumber: 2.8 Consensus size: 53
91067945 AAAATTGTAT
* *
91067955 ATCATATCTAAG-TTGCAATCATATCTAAGATTG-TATCATATCTAAGATTGCA
1 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAATCATATCTAAGATTGCA
91068007 ATCATATCTAAGATTGTATCATATCTAAGATTGCAATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGTATCATATCTAAGATTGCAATCATATCTAAGATTGCA
*
91068060 ATCATATCTAAGATTGTATCATATCGAAGATTGCAAATCAT
1 ATCATATCTAAGATTGTATCATATCTAAGATTGC-AATCAT
91068101 TGAAGATTAT
Statistics
Matches: 88, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
52 28 0.32
53 54 0.61
54 6 0.07
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36
Consensus pattern (53 bp):
ATCATATCTAAGATTGTATCATATCTAAGATTGCAATCATATCTAAGATTGCA
Found at i:91083796 original size:18 final size:18
Alignment explanation
Indices: 91083769--91083809 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
91083759 GATACGGATG
*
91083769 CAGATGCAAATAAAGATA
1 CAGATACAAATAAAGATA
* *
91083787 CAGATACAAATATAGTTA
1 CAGATACAAATAAAGATA
91083805 CAGAT
1 CAGAT
91083810 GTTGATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.15, T:0.22
Consensus pattern (18 bp):
CAGATACAAATAAAGATA
Found at i:91089039 original size:78 final size:78
Alignment explanation
Indices: 91088940--91089096 Score: 314
Period size: 78 Copynumber: 2.0 Consensus size: 78
91088930 AAATCCTTTC
91088940 TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA
1 TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA
91089005 TTTGTTTTGTGAT
66 TTTGTTTTGTGAT
91089018 TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA
1 TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA
91089083 TTTGTTTTGTGAT
66 TTTGTTTTGTGAT
91089096 T
1 T
91089097 CTTGGACTTG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.18, C:0.10, G:0.22, T:0.50
Consensus pattern (78 bp):
TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA
TTTGTTTTGTGAT
Found at i:91092786 original size:25 final size:25
Alignment explanation
Indices: 91092705--91092786 Score: 110
Period size: 25 Copynumber: 3.3 Consensus size: 25
91092695 CCATTAGGGT
*
91092705 TACCGATTTATAGCTCATGAGAGCA
1 TACCGATTTATAGCTCGTGAGAGCA
* * * *
91092730 TGCCAATTGATAGCTCGTGAAAGCA
1 TACCGATTTATAGCTCGTGAGAGCA
*
91092755 TATCGATTTATAGCTCGTGAGAGCA
1 TACCGATTTATAGCTCGTGAGAGCA
91092780 TACCGAT
1 TACCGAT
91092787 CTTTGGTTCA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (25 bp):
TACCGATTTATAGCTCGTGAGAGCA
Found at i:91093818 original size:15 final size:15
Alignment explanation
Indices: 91093786--91093814 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91093776 ATTTTCTATG
91093786 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
91093801 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
91093815 ATTTTCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:91095014 original size:45 final size:44
Alignment explanation
Indices: 91094941--91095073 Score: 119
Period size: 45 Copynumber: 3.0 Consensus size: 44
91094931 ATAGGATCCA
* * * *
91094941 ATATGTGTTTTCGTGTAAAACCACGTCTGCGACATTGGCATCGAT
1 ATATGTG-ATTCGTGTAAGACCATGTCTGAGACATTGGCATCGAT
* ** *
91094986 ATATGTGGTTACGTGTAAGACCATGTCTGAGACATCAGCATTG-T
1 ATATGTGATT-CGTGTAAGACCATGTCTGAGACATTGGCATCGAT
* * * *
91095030 AT-T-TGATTTGTGTAAGACCCTGTCTGGGACAGTGGCATCGAT
1 ATATGTGATTCGTGTAAGACCATGTCTGAGACATTGGCATCGAT
91095072 AT
1 AT
91095074 GAGATAGCAT
Statistics
Matches: 71, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
41 25 0.35
42 7 0.10
43 1 0.01
44 5 0.07
45 33 0.46
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (44 bp):
ATATGTGATTCGTGTAAGACCATGTCTGAGACATTGGCATCGAT
Found at i:91105868 original size:9 final size:9
Alignment explanation
Indices: 91105853--91105884 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
91105843 TATTGATATG
91105853 TTTTGAAAT
1 TTTTGAAAT
*
91105862 GTTTGAAAT
1 TTTTGAAAT
91105871 TTTTGAAAT
1 TTTTGAAAT
91105880 TTTTG
1 TTTTG
91105885 TCCGTTTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (9 bp):
TTTTGAAAT
Found at i:91110688 original size:23 final size:23
Alignment explanation
Indices: 91110662--91110705 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
91110652 CGCAAAAATA
* *
91110662 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
91110685 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
91110706 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:91113083 original size:46 final size:46
Alignment explanation
Indices: 91113022--91113163 Score: 221
Period size: 46 Copynumber: 3.0 Consensus size: 46
91113012 TGATGTACAA
*
91113022 GATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTAT
1 GATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
91113068 GATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 GATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
* ** *
91113114 GAGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTAT
1 GA--TATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
91113162 GA
1 GA
91113164 GATGTGTATA
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
46 47 0.53
48 42 0.47
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.30
Consensus pattern (46 bp):
GATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
Found at i:91113146 original size:48 final size:47
Alignment explanation
Indices: 91113029--91113164 Score: 211
Period size: 48 Copynumber: 2.9 Consensus size: 47
91113019 CAAGATATAT
* * *
91113029 ATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGA-TATAT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGCATAC
*
91113075 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGCCATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG-CATAC
*
91113123 ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
91113165 ATGTGTATAT
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 40 0.48
48 43 0.52
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (47 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGCATAC
Found at i:91116046 original size:71 final size:71
Alignment explanation
Indices: 91115969--91116111 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
91115959 CATAAACACA
91115969 AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTCGCATGGCCGTACACACATACATCAC
1 AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTCGCATGGCCGTACACACATACATCAC
91116034 AAAAGT
66 AAAAGT
*
91116040 AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTTGCATGGCCGTACACACATACATCAC
1 AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTCGCATGGCCGTACACACATACATCAC
91116105 AAAAGT
66 AAAAGT
91116111 A
1 A
91116112 CTTGAAAAAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (71 bp):
AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTCGCATGGCCGTACACACATACATCAC
AAAAGT
Found at i:91116657 original size:40 final size:39
Alignment explanation
Indices: 91116597--91116760 Score: 159
Period size: 40 Copynumber: 4.1 Consensus size: 39
91116587 CGGAATTTAA
* ** *
91116597 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
91116637 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
*
91116677 CCGGATATAACAACTCGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCA-CAATGCCTTCGGGTCTTAGC
* * *
91116717 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
91116757 CCGG
1 CCGG
91116761 GTATTATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 101 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:91119810 original size:5 final size:5
Alignment explanation
Indices: 91119800--91119834 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
91119790 AATTTCACAT
*
91119800 ATATA ATATA ATATA ATATA ATATA ATGTA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
91119835 CTAACTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:91120020 original size:20 final size:21
Alignment explanation
Indices: 91119997--91120036 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
91119987 TTTCAAATAA
*
91119997 CATTTTTTATTTTT-ATTTTT
1 CATTTTTCATTTTTCATTTTT
91120017 CATTTTTCATTTTTCATTTT
1 CATTTTTCATTTTTCATTTT
91120037 CGGAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (21 bp):
CATTTTTCATTTTTCATTTTT
Found at i:91120023 original size:14 final size:14
Alignment explanation
Indices: 91119997--91120036 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
91119987 TTTCAAATAA
*
91119997 CATTTTTTATTTTT
1 CATTTTTCATTTTT
91120011 -ATTTTTCATTTTT
1 CATTTTTCATTTTT
91120024 CATTTTTCATTTT
1 CATTTTTCATTTT
91120037 CGGAAAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:91120056 original size:6 final size:7
Alignment explanation
Indices: 91119997--91120036 Score: 64
Period size: 7 Copynumber: 5.9 Consensus size: 7
91119987 TTTCAAATAA
91119997 CATTTTT
1 CATTTTT
*
91120004 TATTTTT
1 CATTTTT
91120011 -ATTTTT
1 CATTTTT
91120017 CATTTTT
1 CATTTTT
91120024 CATTTTT
1 CATTTTT
91120031 CATTTT
1 CATTTT
91120037 CGGAAAACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 6 0.19
7 25 0.81
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (7 bp):
CATTTTT
Found at i:91125405 original size:14 final size:14
Alignment explanation
Indices: 91125370--91125407 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
91125360 TAACAAAAAC
91125370 CATTTTTTTATTTT
1 CATTTTTTTATTTT
*
91125384 C-TAATTTTTATTTT
1 CAT-TTTTTTATTTT
91125398 CATTTTTTTA
1 CATTTTTTTA
91125408 AAATCATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
13 1 0.05
14 18 0.90
15 1 0.05
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (14 bp):
CATTTTTTTATTTT
Found at i:91125838 original size:23 final size:23
Alignment explanation
Indices: 91125811--91125861 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
91125801 GGATTTAAAC
*
91125811 AAATAACCATA-TTTATATTATTA
1 AAATAACCATATTTTATACTA-TA
**
91125834 AAATATTCATATTTTATACTATA
1 AAATAACCATATTTTATACTATA
91125857 AAATA
1 AAATA
91125862 TTTATTATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATAACCATATTTTATACTATA
Found at i:91125870 original size:24 final size:24
Alignment explanation
Indices: 91125818--91125863 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
91125808 AACAAATAAC
*
91125818 CATA-TTTATATTATTAAAATATT
1 CATATTTTATACTATTAAAATATT
91125841 CATATTTTATACTA-TAAAATATT
1 CATATTTTATACTATTAAAATATT
91125864 TATTATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (24 bp):
CATATTTTATACTATTAAAATATT
Found at i:91125910 original size:15 final size:15
Alignment explanation
Indices: 91125855--91125911 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 15
91125845 TTTTATACTA
91125855 TAAAATATTTATTAT
1 TAAAATATTTATTAT
*
91125870 T-AAATATTTATGAATT
1 TAAAATATTTAT-TA-T
91125886 TAATATATATTTATTAT
1 TAA-A-ATATTTATTAT
91125903 TAAAATATT
1 TAAAATATT
91125912 AATAGATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 10 0.29
15 7 0.20
16 3 0.09
17 5 0.14
18 2 0.06
19 8 0.23
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
TAAAATATTTATTAT
Found at i:91125986 original size:19 final size:18
Alignment explanation
Indices: 91125952--91125998 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
91125942 ATATTACTCA
*
91125952 TAATTTTAAA-TTATTAT
1 TAATTTAAAATTTATTAT
91125969 TAATGTTAAAATTTATTAT
1 TAAT-TTAAAATTTATTAT
91125988 TAATTTAAAAT
1 TAATTTAAAAT
91125999 CATAATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 11 0.41
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTTAAAATTTATTAT
Found at i:91126007 original size:19 final size:19
Alignment explanation
Indices: 91125966--91126009 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
91125956 TTTAAATTAT
* *
91125966 TATTAATGTTAAAATTTAT
1 TATTAATGTTAAAATATAA
91125985 TATTAAT-TTAAAATCATAA
1 TATTAATGTTAAAAT-ATAA
91126004 TATTAA
1 TATTAA
91126010 ATTTTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
TATTAATGTTAAAATATAA
Found at i:91126028 original size:32 final size:32
Alignment explanation
Indices: 91125969--91126030 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
91125959 AAATTATTAT
* *
91125969 TAATGTTAAAATTTATTATTAATTTAAAATCA
1 TAATATTAAAATTTATTATAAATTTAAAATCA
*
91126001 TAATATTAAATTTTATTA-AAATATTAAAAT
1 TAATATTAAAATTTATTATAAAT-TTAAAAT
91126031 ATGTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 3 0.12
32 23 0.88
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (32 bp):
TAATATTAAAATTTATTATAAATTTAAAATCA
Found at i:91127208 original size:21 final size:20
Alignment explanation
Indices: 91127162--91127208 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
91127152 GATTTAAATG
91127162 AAATT-TTTTGAATAATTTA
1 AAATTATTTTGAATAATTTA
* *
91127181 ACTATTATTTTGTAATATTTTA
1 A-AATTATTTTG-AATAATTTA
91127203 AAATTA
1 AAATTA
91127209 AATTACTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.05
20 3 0.14
21 9 0.41
22 9 0.41
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (20 bp):
AAATTATTTTGAATAATTTA
Found at i:91129198 original size:3 final size:3
Alignment explanation
Indices: 91129192--91129220 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
91129182 ATTAATATTA
91129192 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
91129221 ATTATTATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:91129225 original size:3 final size:3
Alignment explanation
Indices: 91129219--91129255 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
91129209 GTTGTTGTTG
*
91129219 TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
91129256 ATTTCTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:91129234 original size:9 final size:9
Alignment explanation
Indices: 91129187--91129255 Score: 57
Period size: 9 Copynumber: 7.7 Consensus size: 9
91129177 CCGGTATTAA
91129187 TATTATTGT
1 TATTATTGT
* *
91129196 TGTTGTTGT
1 TATTATTGT
* *
91129205 TGTTGTTGT
1 TATTATTGT
* * *
91129214 TGTTGTTAT
1 TATTATTGT
91129223 TATTATTGT
1 TATTATTGT
*
91129232 TATTATTAT
1 TATTATTGT
*
91129241 TATTATTAT
1 TATTATTGT
91129250 TATTAT
1 TATTAT
91129256 ATTTCTTTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.67
Consensus pattern (9 bp):
TATTATTGT
Found at i:91136832 original size:11 final size:11
Alignment explanation
Indices: 91136818--91136858 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
91136808 TATTTTCTCC
91136818 CTATTTTGCTA
1 CTATTTTGCTA
*
91136829 CTATTTTACTA
1 CTATTTTGCTA
* *
91136840 TTATATTGCTA
1 CTATTTTGCTA
91136851 CTATTTTG
1 CTATTTTG
91136859 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:91136942 original size:30 final size:29
Alignment explanation
Indices: 91136895--91136956 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 29
91136885 ACTTATTTTA
91136895 TTGTTAATTTTTTATTATTGTA-AAGACAT
1 TTGTTAATTTTTTATTATTGTAGAA-ACAT
*
91136924 TTGTTAATTTTGTTATTATTTTAGAAACAT
1 TTGTTAATTTT-TTATTATTGTAGAAACAT
91136954 TTG
1 TTG
91136957 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 11 0.37
30 17 0.57
31 2 0.07
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.56
Consensus pattern (29 bp):
TTGTTAATTTTTTATTATTGTAGAAACAT
Found at i:91137060 original size:18 final size:18
Alignment explanation
Indices: 91137039--91137077 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
91137029 GAAATATTTA
*
91137039 TTTGAT-GTTTTTAGTATT
1 TTTGATGGTTTATA-TATT
91137057 TTTGATGGTTTATATATT
1 TTTGATGGTTTATATATT
91137075 TTT
1 TTT
91137078 TAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (18 bp):
TTTGATGGTTTATATATT
Found at i:91137077 original size:19 final size:18
Alignment explanation
Indices: 91137032--91137078 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
91137022 TTGTTGAGAA
*
91137032 ATATTTATTTGATGTTTTT
1 ATATTT-TTTGATGTTTAT
91137051 AGTA-TTTTTGATGGTTTAT
1 A-TATTTTTTGAT-GTTTAT
91137070 ATATTTTTT
1 ATATTTTTT
91137079 AAAATTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 8 0.33
19 14 0.58
20 2 0.08
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (18 bp):
ATATTTTTTGATGTTTAT
Found at i:91137100 original size:12 final size:12
Alignment explanation
Indices: 91137079--91137112 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
91137069 TATATTTTTT
*
91137079 AAAATTATATAA
1 AAAATAATATAA
91137091 AAAATAATATAA
1 AAAATAATATAA
*
91137103 AAATTAATAT
1 AAAATAATAT
91137113 GGGCGGGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:91137360 original size:30 final size:31
Alignment explanation
Indices: 91137326--91137383 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
91137316 TATTTTGATG
91137326 AGATGGATATTG-TTTTTTTTTAAAAAACAC
1 AGATGGATATTGTTTTTTTTTTAAAAAACAC
91137356 AGATGGATATTGTTTTTTTTTTAAAAAA
1 AGATGGATATTGTTTTTTTTTTAAAAAA
91137384 AACACTCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 12 0.44
31 15 0.56
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.47
Consensus pattern (31 bp):
AGATGGATATTGTTTTTTTTTTAAAAAACAC
Found at i:91138943 original size:66 final size:66
Alignment explanation
Indices: 91138866--91139001 Score: 272
Period size: 66 Copynumber: 2.1 Consensus size: 66
91138856 TACATACAAA
91138866 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
1 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
91138931 T
66 T
91138932 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
1 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
91138997 T
66 T
91138998 CAGA
1 CAGA
91139002 AAACATGCCC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25
Consensus pattern (66 bp):
CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA
T
Found at i:91140214 original size:22 final size:22
Alignment explanation
Indices: 91140171--91140214 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
91140161 ACGGGAAATC
**
91140171 GAAAGAAAAGAAAAACGGAGAA
1 GAAAGAAAAGAAAAACAAAGAA
91140193 GAAAGAAAAAGAAAAA-AAAGAA
1 GAAAG-AAAAGAAAAACAAAGAA
91140215 AAGAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00
Consensus pattern (22 bp):
GAAAGAAAAGAAAAACAAAGAA
Found at i:91143957 original size:17 final size:17
Alignment explanation
Indices: 91143935--91143967 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
91143925 ACAAGGGAGA
91143935 AAAAGAAAGAAAGAAAG
1 AAAAGAAAGAAAGAAAG
*
91143952 AAAAGAAAGGAAGAAA
1 AAAAGAAAGAAAGAAA
91143968 AGAGAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAAGAAAGAAAGAAAG
Found at i:91143958 original size:13 final size:13
Alignment explanation
Indices: 91143936--91143970 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
91143926 CAAGGGAGAA
91143936 AAAG-AAAGAAAG
1 AAAGAAAAGAAAG
91143948 AAAGAAAAGAAAG
1 AAAGAAAAGAAAG
*
91143961 GAAGAAAAGA
1 AAAGAAAAGA
91143971 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAAGAAAAGAAAG
Found at i:91144946 original size:51 final size:53
Alignment explanation
Indices: 91144884--91145001 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 53
91144874 ATGTGTCGAC
* *
91144884 TACTGTGACTGTTCCGGATTCGTTCCGAAGAGGTAC-TCTGTACC-TGACTGT
1 TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTTCTGTACCGTGACTGT
** * * * *
91144935 TACTGTTACTGTTTTAGATTTGTTCCGATGAGGTACTTTGTGTACCGTTACTGT
1 TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTAC-TTCTGTACCGTGACTGT
91144989 TACTGTTACTGTT
1 TACTGTTACTGTT
91145002 ATTGTTACGG
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
51 30 0.54
53 7 0.12
54 19 0.34
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.42
Consensus pattern (53 bp):
TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTTCTGTACCGTGACTGT
Found at i:91144998 original size:54 final size:51
Alignment explanation
Indices: 91144900--91145001 Score: 141
Period size: 54 Copynumber: 1.9 Consensus size: 51
91144890 GACTGTTCCG
91144900 GATTCGTTCCGAAGAGGTACTCTGTACCTGACTGTTACTGTTACTGTTTTA
1 GATTCGTTCCGAAGAGGTACTCTGTACCTGACTGTTACTGTTACTGTTTTA
* * * *
91144951 GATTTGTTCCGATGAGGTACTTTGTGTACCGTTACTGTTACTGTTACTGTT
1 GATTCGTTCCGAAGAGGTAC--TCTGTACC-TGACTGTTACTGTTACTGTT
91145002 ATTGTTACGG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
51 18 0.41
53 7 0.16
54 19 0.43
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.42
Consensus pattern (51 bp):
GATTCGTTCCGAAGAGGTACTCTGTACCTGACTGTTACTGTTACTGTTTTA
Found at i:91150126 original size:2 final size:2
Alignment explanation
Indices: 91150119--91150158 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
91150109 GCTTTGATAG
91150119 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91150159 AGTATAATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91151560 original size:40 final size:39
Alignment explanation
Indices: 91151456--91151563 Score: 155
Period size: 38 Copynumber: 2.8 Consensus size: 39
91151446 TGTGTGTCCG
*
91151456 GGCTTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCC
1 GGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCC
* *
91151495 GGGTTAAA-TCCCGCAGGCTTAGTGCTGGTATTATATTC
1 GGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCC
* *
91151533 GAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 G-GCTTAAAGTCCCGCAGGCTTAGTGCTGGT
91151564 GACTGGATTC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
38 29 0.48
39 13 0.21
40 19 0.31
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (39 bp):
GGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCC
Found at i:91156431 original size:11 final size:11
Alignment explanation
Indices: 91156415--91156439 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91156405 TTCATTTCCC
91156415 TTTAATATTAG
1 TTTAATATTAG
91156426 TTTAATATTAG
1 TTTAATATTAG
91156437 TTT
1 TTT
91156440 TTACAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (11 bp):
TTTAATATTAG
Found at i:91163096 original size:25 final size:25
Alignment explanation
Indices: 91163027--91163122 Score: 86
Period size: 25 Copynumber: 3.8 Consensus size: 25
91163017 ATACACCACA
* * *
91163027 GCTCTCACGAGATTC-CCATTATTTA
1 GCTCTCACGAGCTTCTCGA-TATTTG
* * * *
91163052 GCTCTTATGAGCATCCCGATATTTG
1 GCTCTCACGAGCTTCTCGATATTTG
*
91163077 GCTCTCACGAGTTTCTCGATATTTG
1 GCTCTCACGAGCTTCTCGATATTTG
**
91163102 GCTCTCTTGAGCTTCTCGATA
1 GCTCTCACGAGCTTCTCGATA
91163123 AATGACTCGC
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
25 54 0.96
26 2 0.04
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.38
Consensus pattern (25 bp):
GCTCTCACGAGCTTCTCGATATTTG
Found at i:91163155 original size:25 final size:25
Alignment explanation
Indices: 91163127--91163174 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91163117 TCGATAAATG
*
91163127 ACTCGCAAGAGCTTCCCGTTATACA
1 ACTCACAAGAGCTTCCCGTTATACA
* *
91163152 ACTCACATGAGTTTCCCGTTATA
1 ACTCACAAGAGCTTCCCGTTATA
91163175 TGGCTCGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (25 bp):
ACTCACAAGAGCTTCCCGTTATACA
Found at i:91163620 original size:42 final size:42
Alignment explanation
Indices: 91163573--91163657 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
91163563 AAATGGTAAG
91163573 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA
1 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA
** * *
91163615 TTAAATTCCATGTTTTATGAACTTACTAAGCTTAAATGCTTA
1 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA
91163657 T
1 T
91163658 ATTGTTTCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.40
Consensus pattern (42 bp):
TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA
Found at i:91165992 original size:21 final size:22
Alignment explanation
Indices: 91165954--91165997 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
91165944 TTCCCTGTTC
*
91165954 TTTCTTTTTTTTTCTATT-TTA
1 TTTCTTTTTCTTTCTATTATTA
91165975 TTTCTTTATTCTTT-TATTATTA
1 TTTCTTT-TTCTTTCTATTATTA
91165997 T
1 T
91165998 ATTATATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTCTTTTTCTTTCTATTATTA
Found at i:91168726 original size:9 final size:9
Alignment explanation
Indices: 91168703--91168962 Score: 116
Period size: 9 Copynumber: 27.4 Consensus size: 9
91168693 TTTTTCCATA
91168703 AAAAATTATT
1 AAAAATTA-T
*
91168713 AAAAAATCAT
1 -AAAAATTAT
91168723 AAAAATTTTAT
1 AAAAA--TTAT
*
91168734 AAAAATCA-
1 AAAAATTAT
*
91168742 AAACAAATAT
1 AAA-AATTAT
91168752 AAAAA-TAT
1 AAAAATTAT
*
91168760 TAAAATTAAT
1 AAAAATT-AT
*
91168770 ATAAACTTAT
1 A-AAAATTAT
*
91168780 TAAAATTAT
1 AAAAATTAT
91168789 -AAAATATAT
1 AAAAAT-TAT
91168798 AAAAACTTAT
1 AAAAA-TTAT
*
91168808 AAATATTAT
1 AAAAATTAT
*
91168817 AAAAA-TAG
1 AAAAATTAT
91168825 AAAAATCTA-
1 AAAAAT-TAT
* *
91168834 ATAAATCAT
1 AAAAATTAT
91168843 AAAAATTAT
1 AAAAATTAT
91168852 AAAAATTAAT
1 AAAAATT-AT
*
91168862 AAAAAATAT
1 AAAAATTAT
**
91168871 TTAAATTAT
1 AAAAATTAT
*
91168880 AAAAATAGAAT
1 AAAAAT--TAT
* *
91168891 TAAAATTCTT
1 AAAAATT-AT
*
91168901 AAAAAATAAT
1 -AAAAATTAT
* *
91168911 AAAATTTGT
1 AAAAATTAT
*
91168920 AAAATTTAT
1 AAAAATTAT
*
91168929 AAAAAAAATAT
1 --AAAAATTAT
*
91168940 TAAAATTGAT
1 AAAAATT-AT
*
91168950 AAAACTTAT
1 AAAAATTAT
91168959 AAAA
1 AAAA
91168963 CGTACTAAAA
Statistics
Matches: 188, Mismatches: 40, Indels: 44
0.69 0.15 0.16
Matches are distributed among these distances:
8 23 0.12
9 87 0.46
10 38 0.20
11 40 0.21
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:91168792 original size:28 final size:27
Alignment explanation
Indices: 91168749--91168865 Score: 91
Period size: 28 Copynumber: 4.3 Consensus size: 27
91168739 TCAAAACAAA
* *
91168749 TATAAAAATATTAAAAT-TAATATAAACT
1 TATAAAATTA-TAAAATAT-ATAAAAACT
91168777 TATTAAAATTATAAAATATATAAAAACT
1 TA-TAAAATTATAAAATATATAAAAACT
*
91168805 TATAAATATTATAAAA-ATAGAAAAATCT
1 TATAAA-ATTATAAAATATATAAAAA-CT
* *
91168833 AAT-AAATCATAAAA-ATTATAAAAA-T
1 TATAAAATTATAAAATA-TATAAAAACT
91168858 TAATAAAA
1 T-ATAAAA
91168866 AATATTTAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 15
0.77 0.07 0.15
Matches are distributed among these distances:
25 1 0.01
26 11 0.15
27 24 0.32
28 31 0.41
29 8 0.11
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.32
Consensus pattern (27 bp):
TATAAAATTATAAAATATATAAAAACT
Found at i:91168865 original size:19 final size:19
Alignment explanation
Indices: 91168703--91168962 Score: 96
Period size: 19 Copynumber: 13.7 Consensus size: 19
91168693 TTTTTCCATA
* *
91168703 AAAAATTATTAAAAAATCAT
1 AAAAATTA-TAAAAATTAAT
*
91168723 AAAAATTTTATAAAAATCAA-
1 AAAAA--TTATAAAAATTAAT
91168743 AACAAA-TATAAAAA-T-AT
1 AA-AAATTATAAAAATTAAT
* *
91168760 TAAAATTAATATAAACTT-AT
1 AAAAATT-ATA-AAAATTAAT
*
91168780 TAAAATTAT-AAAA-TATAT
1 AAAAATTATAAAAATTA-AT
*
91168798 AAAAACTTATAAATATT-AT
1 AAAAA-TTATAAAAATTAAT
*
91168817 AAAAA-TAGAAAAATCTAAT
1 AAAAATTATAAAAAT-TAAT
*
91168836 --AAATCATAAAAATT-AT
1 AAAAATTATAAAAATTAAT
*
91168852 AAAAATTAATAAAAAAT-AT
1 AAAAATT-ATAAAAATTAAT
** *
91168871 TTAAATTATAAAAATAGAAT
1 AAAAATTATAAAAAT-TAAT
* * *
91168891 TAAAATTCTTAAAAAATAAT
1 AAAAATT-ATAAAAATTAAT
* * * *
91168911 AAAATTTGTAAAATTTATAA
1 AAAAATTATAAAAATTA-AT
* * *
91168931 AAAAAATATTAAAATTGAT
1 AAAAATTATAAAAATTAAT
*
91168950 AAAACTTATAAAA
1 AAAAATTATAAAA
91168963 CGTACTAAAA
Statistics
Matches: 178, Mismatches: 39, Indels: 47
0.67 0.15 0.18
Matches are distributed among these distances:
16 7 0.04
17 16 0.09
18 36 0.20
19 51 0.29
20 48 0.27
21 17 0.10
22 3 0.02
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (19 bp):
AAAAATTATAAAAATTAAT
Found at i:91168935 original size:30 final size:30
Alignment explanation
Indices: 91168901--91168962 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
91168891 TAAAATTCTT
*
91168901 AAAAAATAATAAAATTTG-TAAAATTTATAA
1 AAAAAATAATAAAA-TTGATAAAACTTATAA
*
91168931 AAAAAATATTAAAATTGATAAAACTTATAA
1 AAAAAATAATAAAATTGATAAAACTTATAA
91168961 AA
1 AA
91168963 CGTACTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 3 0.10
30 26 0.90
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (30 bp):
AAAAAATAATAAAATTGATAAAACTTATAA
Found at i:91168953 original size:49 final size:47
Alignment explanation
Indices: 91168844--91168953 Score: 109
Period size: 49 Copynumber: 2.3 Consensus size: 47
91168834 ATAAATCATA
* *
91168844 AAAATTATAAAAATTAATAAAAAATATTTAAATTATAAAAATAGAATT
1 AAAATTATAAAAAATAAT-AAAAATATTTAAATTATAAAAATAAAATT
*
91168892 AAAATTCTTAAAAAATAAT-AAAAT-TTGTAAAATTTATAAAAA-AAATATT
1 AAAATT-ATAAAAAATAATAAAAATATT-T-AAA-TTATAAAAATAAA-ATT
91168941 AAAATTGATAAAA
1 AAAATT-ATAAAA
91168954 CTTATAAAAC
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
46 2 0.04
47 6 0.12
48 11 0.21
49 33 0.63
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33
Consensus pattern (47 bp):
AAAATTATAAAAAATAATAAAAATATTTAAATTATAAAAATAAAATT
Found at i:91169518 original size:17 final size:18
Alignment explanation
Indices: 91169493--91169540 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
91169483 GTTTATATTA
*
91169493 ATTTCATATTTTTTA-AT
1 ATTTAATATTTTTTATAT
91169510 ATTTAATA-TTTTTATAT
1 ATTTAATATTTTTTATAT
*
91169527 TTTTAATATTTTTT
1 ATTTAATATTTTTT
91169541 TTTTAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 6 0.22
17 16 0.59
18 5 0.19
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTAATATTTTTTATAT
Found at i:91169538 original size:9 final size:9
Alignment explanation
Indices: 91169502--91169539 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
91169492 AATTTCATAT
91169502 TTTTTAATA
1 TTTTTAATA
91169511 --TTTAATA
1 TTTTTAATA
91169518 TTTTT-ATA
1 TTTTTAATA
91169526 TTTTTAATA
1 TTTTTAATA
91169535 TTTTT
1 TTTTT
91169540 TTTTTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.27
8 8 0.31
9 11 0.42
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTAATA
Found at i:91169715 original size:46 final size:47
Alignment explanation
Indices: 91169665--91169762 Score: 189
Period size: 46 Copynumber: 2.1 Consensus size: 47
91169655 TTATATGAAC
91169665 TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATAT-AAA
1 TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATATAAAA
91169711 TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATATAAAA
1 TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATATAAAA
91169758 TTAAT
1 TTAAT
91169763 AAGGGTTTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 43 0.84
47 8 0.16
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (47 bp):
TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATATAAAA
Found at i:91175538 original size:5 final size:5
Alignment explanation
Indices: 91175528--91175555 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
91175518 TGATTGATTG
91175528 AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAA
91175556 AAACTTGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:91178644 original size:20 final size:21
Alignment explanation
Indices: 91178610--91178663 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
91178600 TGATGATATT
*
91178610 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
91178631 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
91178651 TTTTATTATTTTA
1 TTATATTATTTTA
91178664 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:91178667 original size:3 final size:3
Alignment explanation
Indices: 91178649--91178697 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
91178639 TTTAATGAGA
*
91178649 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
91178694 TAT T
1 TAT T
91178698 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:91178669 original size:11 final size:11
Alignment explanation
Indices: 91178653--91178691 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
91178643 ATGAGATATT
91178653 TTATTATTTTA
1 TTATTATTTTA
*
91178664 TTATTATTTCA
1 TTATTATTTTA
91178675 TTATTATTTTA
1 TTATTATTTTA
91178686 TTATTA
1 TTATTA
91178692 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:91178677 original size:19 final size:19
Alignment explanation
Indices: 91178649--91178690 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
91178639 TTTAATGAGA
*
91178649 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
91178668 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
91178687 TATT
1 TATT
91178691 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:91180783 original size:54 final size:54
Alignment explanation
Indices: 91180713--91180848 Score: 263
Period size: 54 Copynumber: 2.5 Consensus size: 54
91180703 TTGTTGTTGC
*
91180713 AGGGGATTTAGTCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA
1 AGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA
91180767 AGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA
1 AGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA
91180821 AGGGGATTTAGCCTGGACTGGTAATCCC
1 AGGGGATTTAGCCTGGACTGGTAATCCC
91180849 ACTGTAAGGA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (54 bp):
AGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA
Found at i:91180936 original size:46 final size:46
Alignment explanation
Indices: 91180883--91181068 Score: 266
Period size: 46 Copynumber: 4.0 Consensus size: 46
91180873 GTGTGCTTTT
* *
91180883 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
91180929 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
**
91180975 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * *
91181021 TGATA-GAAAGTGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATGAAA-TGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
91181067 TG
1 TG
91181069 TCAAAGATAA
Statistics
Matches: 128, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 124 0.97
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:91182307 original size:134 final size:134
Alignment explanation
Indices: 91182061--91182320 Score: 322
Period size: 134 Copynumber: 1.9 Consensus size: 134
91182051 TACAATCATT
* * *
91182061 AAAAATTTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAGTGTATGTAGGT
1 AAAAAATTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAGGT
* * * *
91182126 AAAAGCAAACGACCTAGTATAACATTCCAACAATCATTTAATGTCAAATTTATGTTGATAATATG
66 AAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAATATG
91182191 TATA
131 TATA
* *** * * *
91182195 AAAAAATTCTTAGTCTAAATTTATTGTATTTTAGTTGGTCCATCAGTATCATAATATATGTTGGT
1 AAAAAATTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAGGT
* * * * * * * *
91182260 AATAGCAAACAACTTAATATAACTTTTCACCGATCATTTAGTCTCAAATTAATGTTTATAA
66 AAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAA
91182321 AATATCTTCA
Statistics
Matches: 104, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
134 104 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (134 bp):
AAAAAATTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAGGT
AAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAATATG
TATA
Found at i:91195854 original size:3 final size:3
Alignment explanation
Indices: 91195848--91195917 Score: 131
Period size: 3 Copynumber: 23.0 Consensus size: 3
91195838 TTATGTTTTC
91195848 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
91195894 TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
91195918 ATAATATATA
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 63 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:91197229 original size:7 final size:7
Alignment explanation
Indices: 91197217--91197249 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
91197207 GTTAGAGTTT
91197217 ATATATA
1 ATATATA
91197224 ATATATA
1 ATATATA
91197231 ATATATA
1 ATATATA
*
91197238 ATATAAA
1 ATATATA
91197245 ATATA
1 ATATA
91197250 AAAATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
ATATATA
Found at i:91198797 original size:131 final size:132
Alignment explanation
Indices: 91198556--91199173 Score: 506
Period size: 132 Copynumber: 4.7 Consensus size: 132
91198546 TAGAAAATAC
* * * * ** **
91198556 GAGTGAAATTCTGAAAGAGATATTCGATTATTTTAAACAAATG-GGGATTGCAACCCAGCACGAT
1 GAGTGAAATTCCG-AAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGAT
*
91198620 AGGGCACTG-TTCCTCGAATTGCCAAACATCGAACATT-TCTTCTGTTTTAAAGAG-TTTTTAGA
65 AGGGCAC-GATT-CTCGAATTGCCAAACATCGAACATTGCCTTC-GTTTTAAAGAGATTTTTAGA
91198682 AAACGT
127 AAACGT
* * ** * * *
91198688 GAGTGGAATTCCGAAGGGATCTTCGATCGTTTTGAACAAATGAAAAAGCACAACCCAGCACGATA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATA
* * * * * *
91198753 GGGCACGATTCTCGAATTGCCAAACATCGAACATCGCCTTTGTTTTGAAGGGTTTTCTTAAAAAA
66 GGGCACGATTCTCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAGATTT-TTAGAAAA
*
91198818 CAT
130 CGT
* * * * *
91198821 GAGTGAAA-ACCTAAAGGAACATTCGATTATTTTGAACAAACGAGAAATCACAACCCAACACGAT
1 GAGTGAAATTCC-GAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGAT
* * * * * ** * *
91198885 AGGGCATGATTCCCGAATGGTCAAACACCGAGTATTGCCTTCGTTTTAAAG-GACTTTTAGAAGA
65 AGGGCACGATTCTCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAGATTTTTAGAAAA
*
91198949 CCT
130 CGT
** * * * * *
91198952 GAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCGAACGAGAAATTACAACCCTA-CACGTT
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCC-AGCACGAT
* * * * *
91199016 AGTGCACGATTC-CGTGAATTGCTAAATATCAAACTTTGCCTTCGTTTTAAAGA-ATTTTTA-AA
65 AGGGCACGATTCTC--GAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAGATTTTTAGAA
*
91199078 AGGCGT
128 A-ACGT
** **
91199084 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGA-AAAC-ACGAAATTGCAACCCAGCAC-A
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGA-ACAAACGA-GAAATCACAACCCAGCACGA
* *
91199146 TTAGGGCACTATTCCGCGAATTGCCAAA
64 -TAGGGCACGATT-CTCGAATTGCCAAA
91199174 TATCAAATCT
Statistics
Matches: 387, Mismatches: 81, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
130 1 0.00
131 130 0.34
132 155 0.40
133 100 0.26
134 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (132 bp):
GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATA
GGGCACGATTCTCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAGATTTTTAGAAAAC
GT
Found at i:91198875 original size:133 final size:131
Alignment explanation
Indices: 91198606--91198935 Score: 353
Period size: 133 Copynumber: 2.5 Consensus size: 131
91198596 ATGGGGATTG
**
91198606 CAACCCAGCACGATAGGGCACTG-TTCCTCGAATTGCCAAACATCGAACATTTCTTCTGTTTTAA
1 CAACCCAGCACGATAGGGCAC-GATT-CTCGAATTGCCAAACATCGAACATGCCTTCTGTTTTAA
* * ** * * * *
91198670 AGAGTTTTTAGAAAACGTGAGTGGAATTCCGAAGGGATCTTCGATCGTTTTGAACAAATGAAAAA
64 AGAGTTTTTAAAAAACATGAGTGGAAAACCGAAAGGAACTTCGATCATTTTGAACAAACGAAAAA
91198735 GCA
129 GCA
*
91198738 CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACATCGCCTT-TGTTTTGAA
1 CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACAT-GCCTTCTGTTTTAAA
* * * *
91198802 GGGTTTTCTTAAAAAACATGAGT-GAAAACCTAAAGGAACATTCGATTATTTTGAACAAACGAGA
65 GAG-TTT-TTAAAAAACATGAGTGGAAAACCGAAAGGAAC-TTCGATCATTTTGAACAAACGAAA
*
91198866 AATCA
127 AAGCA
* * * * * * **
91198871 CAACCCAACACGATAGGGCATGATTCCCGAATGGTCAAACACCGAGTATTGCCTTC-GTTTTAAA
1 CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACA-TGCCTTCTGTTTTAAA
91198935 G
65 G
91198936 GACTTTTAGA
Statistics
Matches: 166, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
131 35 0.21
132 40 0.24
133 90 0.54
134 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (131 bp):
CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACATGCCTTCTGTTTTAAAG
AGTTTTTAAAAAACATGAGTGGAAAACCGAAAGGAACTTCGATCATTTTGAACAAACGAAAAAGC
A
Found at i:91202604 original size:132 final size:132
Alignment explanation
Indices: 91202028--91202603 Score: 852
Period size: 132 Copynumber: 4.4 Consensus size: 132
91202018 AGGATTATGA
* **
91202028 CTTCGATCTGCTTCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAAT-TTCAGCCTACTCCACTACA
* * *
91202093 TCTTTAGGGAGTTAGGTTGGTGG-TGTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCG
65 ACTTTAGGGAGCTAGGTTGGTGGCT-TAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCA
91202157 CCGT
129 CCGT
* * *
91202161 CTTCGATATAC-TCTACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCTACTACA
1 CTTCGATCTGCTTC-ACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACA
* *
91202225 ACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTTCTTCACTGCAACTTCAGGAAGCCAAGATTCAT
65 ACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCAC
91202290 CGAT
130 CG-T
* *
91202294 -TTCGATTTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCATTACAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA
* * *
91202358 CTTTAAGGAGCTATGTTGGTGGCTTAAATCTGCTTCACTGCAATTTCAGGAAGCCAAGATTCACC
66 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC
91202423 GT
131 GT
* * * * *
91202425 CTTCGATCTGCTTCACTACAACTCCAGGGAAGCAGGATCTAAAATTTTAGCCTACTCCACTACAA
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA
* *
91202490 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAAGAAGCTAAGATTCACC
66 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC
91202555 GT
131 GT
* * * *
91202557 CTTCGGTCTGCTTCAGTGCAACTTCAGGGAAACAGGATCTGAAATTT
1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTT
91202604 TGCCAATGTC
Statistics
Matches: 400, Mismatches: 38, Indels: 11
0.89 0.08 0.02
Matches are distributed among these distances:
131 1 0.00
132 358 0.89
133 41 0.10
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA
CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC
GT
Found at i:91213788 original size:26 final size:26
Alignment explanation
Indices: 91213759--91213811 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
91213749 TCAAACATGC
*
91213759 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* *
91213785 ATTTCGATAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
91213811 A
1 A
91213812 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:91215311 original size:26 final size:26
Alignment explanation
Indices: 91215280--91215386 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
91215270 TGAAATTCCC
*
91215280 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
91215306 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
91215332 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
91215358 -TCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91215383 ATCA
1 ATCA
91215387 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:91215381 original size:51 final size:52
Alignment explanation
Indices: 91215280--91215386 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
91215270 TGAAATTCCC
91215280 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
91215332 ATCATGGAATATTTACCTAATCCATT-TCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
91215383 ATCA
1 ATCA
91215387 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 29 0.55
52 24 0.45
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:91217432 original size:131 final size:133
Alignment explanation
Indices: 91217240--91217536 Score: 318
Period size: 133 Copynumber: 2.2 Consensus size: 133
91217230 ATGGGGATTG
* **
91217240 CAACCCAGCACGATAGGGTACT-ATTCCTCGAATTGCCAAACATCGAACATTTCTTCAGTTTTAA
1 CAACCCAGCACGATAGGGCA-TGATT-CTCGAATTGCCAAACATCGAACATGCCTTCAGTTTTAA
* * * ** * * * *
91217304 AGAG-TTT-TTAGAAAACGTGAGTGGAATTCCG-AAGAGATC-TTCGATCGTTTTGAACAAATGA
64 AGAGTTTTCTTAAAAAACATAAGT-GAAAACCGAAAG-GAACATTCGATCATTTTGAAAAAACGA
91217365 AAAAGCA
127 AAAAGCA
* * *
91217372 CAACCCAGCACGATAGGGGATGATTCTCGAATTGCCAAACATCGAACATCGCCTT-TGTTTTGAA
1 CAACCCAGCACGATAGGGCATGATTCTCGAATTGCCAAACATCGAACAT-GCCTTCAGTTTTAAA
* * * *
91217436 GGGTTTTCTTAAAAAACATAAGTGAAAACCTAAAGGAACATTCGATTATTTTGAAAAAACGAGAA
65 GAGTTTTCTTAAAAAACATAAGTGAAAACCGAAAGGAACATTCGATCATTTTGAAAAAACGAAAA
*
91217501 ATCA
130 AGCA
*
91217505 CAACCCAACACGATAGGGCATGATTCTCGAAT
1 CAACCCAGCACGATAGGGCATGATTCTCGAAT
91217537 GGTCGAACAC
Statistics
Matches: 138, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
131 34 0.25
132 36 0.26
133 68 0.49
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (133 bp):
CAACCCAGCACGATAGGGCATGATTCTCGAATTGCCAAACATCGAACATGCCTTCAGTTTTAAAG
AGTTTTCTTAAAAAACATAAGTGAAAACCGAAAGGAACATTCGATCATTTTGAAAAAACGAAAAA
GCA
Found at i:91217644 original size:131 final size:132
Alignment explanation
Indices: 91217475--91217800 Score: 315
Period size: 132 Copynumber: 2.5 Consensus size: 132
91217465 CTAAAGGAAC
* * *
91217475 ATTCGATTATTTTGAAAAAACGAGAAATCACAACCCAACACGATAGGGCATGATT-CTCGAATGG
1 ATTCGATTATTTTGAGAAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG
* ** * * * *
91217539 -TCGAACA-CCGAGTATTGCCTTCGTTTTAAAGGACTTTTAGAAGATC-TGAGTGAAATTTCGAA
66 CT-AAACATCAAACT-TTGCCTTCGTTTTAAAGAACTTTTAAAAG-GCGTGAGTGAAATTTCGAA
91217601 GGGAT
128 GGGAT
* ** * * * *
91217606 ATTTGATTATTTTGAGTGAACGAGAAATTACAACCCAACACGTTAGTGCACGATTCCGCGAATTG
1 ATTCGATTATTTTGAGAAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG
* * * *
91217671 CTAAATATCAAACTTTTCCTTCGTTTTAAAGAATTTTTAAAAGGCGTGAGTGAAATTTTGAAGGG
66 CTAAACATCAAACTTTGCCTTCGTTTTAAAGAACTTTTAAAAGGCGTGAGTGAAATTTCGAAGGG
91217736 AT
131 AT
** * * *
91217738 ATTCGATTATTTTGAGCAAACAC-A-AAATTGCAACCCAGCAC-ATTAGGGCACTATTTCGCGAA
1 ATTCGATTATTTTGAG-AAA-ACGAGAAATCACAACCCAACACGA-TAGGGCACGATTCCGCGAA
91217800 T
63 T
91217801 TGCCAAATAT
Statistics
Matches: 158, Mismatches: 30, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
131 48 0.30
132 102 0.65
133 6 0.04
134 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (132 bp):
ATTCGATTATTTTGAGAAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG
CTAAACATCAAACTTTGCCTTCGTTTTAAAGAACTTTTAAAAGGCGTGAGTGAAATTTCGAAGGG
AT
Found at i:91217734 original size:132 final size:133
Alignment explanation
Indices: 91217556--91217843 Score: 350
Period size: 132 Copynumber: 2.2 Consensus size: 133
91217546 CCGAGTATTG
* * * * *
91217556 CCTTCGTTTTAAAGGACTTTTAGAAGATCTGAGTGAAATTTCGAAGGGATATTTGATTATTTTGA
1 CCTTCGTTTTAAAGAATTTTTAAAAGAGCTGAGTGAAATTTCGAAGGGATATTCGATTATTTTGA
** * * * * *
91217621 GTGAACGA-GAAATTACAACCCAACACGTTAGTGCACGATTCCGCGAATTGCTAAATATCAAA-C
66 GCAAAC-ACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATAAAATC
**
91217684 TTTT
130 TCAT
*
91217688 CCTTCGTTTTAAAGAATTTTTAAAAG-GCGTGAGTGAAATTTTGAAGGGATATTCGATTATTTTG
1 CCTTCGTTTTAAAGAATTTTTAAAAGAGC-TGAGTGAAATTTCGAAGGGATATTCGATTATTTTG
* * * *
91217752 AGCAAACACAAAATTGCAACCCAGCACATTAGGGCACTATTTCGCGAATTGCCAAATATAAAATC
65 AGCAAACACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATAAAATC
91217817 TCAT
130 TCAT
*
91217821 -CTTCGTCTTAAAGAATTTTTAAA
1 CCTTCGTTTTAAAGAATTTTTAAA
91217844 TGGATACTTA
Statistics
Matches: 133, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
131 2 0.02
132 128 0.96
133 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (133 bp):
CCTTCGTTTTAAAGAATTTTTAAAAGAGCTGAGTGAAATTTCGAAGGGATATTCGATTATTTTGA
GCAAACACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATAAAATCT
CAT
Found at i:91218518 original size:14 final size:14
Alignment explanation
Indices: 91218499--91218527 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91218489 TGGTTCTACA
91218499 AATTATACGTGTAT
1 AATTATACGTGTAT
91218513 AATTATACGTGTAT
1 AATTATACGTGTAT
91218527 A
1 A
91218528 TATATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (14 bp):
AATTATACGTGTAT
Found at i:91218987 original size:2 final size:2
Alignment explanation
Indices: 91218980--91219010 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91218970 TATTATAAAG
91218980 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91219011 GATAATGCGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91225230 original size:15 final size:14
Alignment explanation
Indices: 91225210--91225239 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91225200 TTTTTAAAAA
91225210 AAAAAAATTAATTTT
1 AAAAAAA-TAATTTT
91225225 AAAAAAATAATTTT
1 AAAAAAATAATTTT
91225239 A
1 A
91225240 TCGATGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAAAAATAATTTT
Found at i:91226788 original size:10 final size:10
Alignment explanation
Indices: 91226757--91226818 Score: 56
Period size: 9 Copynumber: 6.1 Consensus size: 10
91226747 ATACCTTAAC
91226757 AAAACCCTAA
1 AAAACCCTAA
* * *
91226767 AATA-CATTA
1 AAAACCCTAA
91226776 AAAACCCT-A
1 AAAACCCTAA
91226785 AAAACCCTAA
1 AAAACCCTAA
91226795 AAAACCCCTTAA
1 AAAA-CCC-TAA
91226807 AAAACCCCTAA
1 AAAA-CCCTAA
91226818 A
1 A
91226819 CCTGGCTGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
9 15 0.35
10 10 0.23
11 7 0.16
12 11 0.26
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAACCCTAA
Found at i:91226797 original size:19 final size:19
Alignment explanation
Indices: 91226757--91226801 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
91226747 ATACCTTAAC
*
91226757 AAAACCCTAAAATACATTA
1 AAAACCCTAAAATACATAA
*
91226776 AAAACCCTAAAA-ACCCTAA
1 AAAACCCTAAAATA-CATAA
91226795 AAAACCC
1 AAAACCC
91226802 CTTAAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 1 0.04
19 22 0.96
ACGTcount: A:0.58, C:0.29, G:0.00, T:0.13
Consensus pattern (19 bp):
AAAACCCTAAAATACATAA
Found at i:91226809 original size:12 final size:12
Alignment explanation
Indices: 91226784--91226815 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
91226774 TAAAAACCCT
91226784 AAAAA-CCC-TA
1 AAAAACCCCTTA
91226794 AAAAACCCCTTA
1 AAAAACCCCTTA
91226806 AAAAACCCCT
1 AAAAACCCCT
91226816 AAACCTGGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 5 0.25
11 3 0.15
12 12 0.60
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAACCCCTTA
Found at i:91227799 original size:20 final size:20
Alignment explanation
Indices: 91227758--91227800 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
91227748 TAATATTTCA
91227758 AATATAAAAAACTAAAATAT
1 AATATAAAAAACTAAAATAT
91227778 AATATGAAATAAA-TAAAA-AT
1 AATAT-AAA-AAACTAAAATAT
91227798 AAT
1 AAT
91227801 TATTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 10 0.48
21 8 0.38
22 3 0.14
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (20 bp):
AATATAAAAAACTAAAATAT
Found at i:91228199 original size:10 final size:11
Alignment explanation
Indices: 91228184--91228208 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
91228174 TAACCTTAAC
91228184 AAAAAAAAAGA
1 AAAAAAAAAGA
91228195 AAAAAAAAAGA
1 AAAAAAAAAGA
91228206 AAA
1 AAA
91228209 GATCTACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:91229552 original size:23 final size:25
Alignment explanation
Indices: 91229493--91229552 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
91229483 CTAACCTTTT
*
91229493 AAAAAATA-TTTTATTTTTTTCTTTC
1 AAAAAA-AGTTTTATTTTTTTCTATC
91229518 ATAAAGAAAGTTTTA-TTTTTT-TATC
1 A-AAA-AAAGTTTTATTTTTTTCTATC
91229543 AAAAAAAGTT
1 AAAAAAAGTT
91229553 AATTTTATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
23 6 0.19
24 3 0.10
25 5 0.16
26 10 0.32
27 7 0.23
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (25 bp):
AAAAAAAGTTTTATTTTTTTCTATC
Found at i:91233726 original size:20 final size:20
Alignment explanation
Indices: 91233701--91233742 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
91233691 TTCTGATGTG
91233701 AAAGTAAAAAGAATTAATAT
1 AAAGTAAAAAGAATTAATAT
91233721 AAAGTAAAAAGAATTAATAT
1 AAAGTAAAAAGAATTAATAT
91233741 AA
1 AA
91233743 GCCCATTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24
Consensus pattern (20 bp):
AAAGTAAAAAGAATTAATAT
Found at i:91243368 original size:19 final size:19
Alignment explanation
Indices: 91243344--91243381 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
91243334 TGACTATGAA
91243344 ATGTATGCGATGAAATTAT
1 ATGTATGCGATGAAATTAT
91243363 ATGTATGCGATGAAATTAT
1 ATGTATGCGATGAAATTAT
91243382 CCCTAGGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (19 bp):
ATGTATGCGATGAAATTAT
Found at i:91244260 original size:22 final size:22
Alignment explanation
Indices: 91244227--91244279 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
91244217 TCAAATGATA
*
91244227 TTTT-CTTAAATTTAAATATTAT
1 TTTTCCTT-AATTTAAATATTAG
** *
91244249 TTTTCCTTAATTTTTATTTTAG
1 TTTTCCTTAATTTAAATATTAG
91244271 TTTTCCTTA
1 TTTTCCTTA
91244280 TGTTCGTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 23 0.88
23 3 0.12
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTCCTTAATTTAAATATTAG
Found at i:91248340 original size:78 final size:78
Alignment explanation
Indices: 91248050--91248356 Score: 324
Period size: 78 Copynumber: 4.0 Consensus size: 78
91248040 AGAATTATGG
* * ** * * * *
91248050 AAATCGAACAAATCCTGTTGAACGACAAGAATAAAAATCCTG-AACAGAATTGTTTAATT-AGTT
1 AAATCAAACAAATCCTGTTAAACGGTAGGAAT-AAAATCCTGAAACAGAAGTGTTCAATTGAGTA
*
91248113 TTCTGTTT-AAAGTA
65 TTCTGTTTGAAA-CA
* * *
91248127 AGAATCAAACAAATCCTGTTAAACGATAGGAATAAAATCCAGAAACAGGAGTGTTCAATTGAGT-
1 A-AATCAAACAAATCCTGTTAAACGGTAGGAATAAAATCCTGAAACAGAAGTGTTCAATTGAGTA
91248191 TTCTGTTTGAAA-A
65 TTCTGTTTGAAACA
* * * *
91248204 AAA-CAAAAAAATCCGGTTAAACGGCAGGAATAAAATCCTGAAATAGAAGTGTTCAATTGA-TAT
1 AAATCAAACAAATCCTGTTAAACGGTAGGAATAAAATCCTGAAACAGAAGTGTTCAATTGAGTAT
91248267 TCTGTTTGAAACA
66 TCTGTTTGAAACA
* * * * *
91248280 GAAATCAAACAAGTCCTGTTAAATGGTAGGAATAAAATCCTGAAACAGGATTGTTCAATTGAAT-
1 -AAATCAAACAAATCCTGTTAAACGGTAGGAATAAAATCCTGAAACAGAAGTGTTCAATTGAGTA
*
91248344 TTCTATTTGAAAC
65 TTCTGTTTGAAAC
91248357 GGAATATAAT
Statistics
Matches: 197, Mismatches: 24, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
74 1 0.01
75 62 0.31
76 3 0.02
77 14 0.07
78 110 0.56
79 7 0.04
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (78 bp):
AAATCAAACAAATCCTGTTAAACGGTAGGAATAAAATCCTGAAACAGAAGTGTTCAATTGAGTAT
TCTGTTTGAAACA
Found at i:91252877 original size:40 final size:40
Alignment explanation
Indices: 91252803--91252987 Score: 250
Period size: 40 Copynumber: 4.6 Consensus size: 40
91252793 AACTCAAGTA
* * *
91252803 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
91252842 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
91252882 CCTTCTGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
91252925 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
91252965 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
91252988 CATCCGAATA
Statistics
Matches: 130, Mismatches: 9, Indels: 13
0.86 0.06 0.09
Matches are distributed among these distances:
39 13 0.10
40 79 0.61
41 1 0.01
43 36 0.28
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:91252926 original size:83 final size:83
Alignment explanation
Indices: 91252803--91252983 Score: 289
Period size: 83 Copynumber: 2.2 Consensus size: 83
91252793 AACTCAAGTA
* * * *
91252803 CCTTCGGGATTTAG-CCGGATATAGC-A--ACTCGCACACATGCCTTCGGGTCTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
91252864 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
*
91252882 CCTTCTGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
91252947 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
91252965 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91252984 ATATCATCCG
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
79 12 0.13
80 10 0.11
81 1 0.01
83 69 0.75
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (83 bp):
CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
TAGTCACTAGCACAAATG
Found at i:91255545 original size:62 final size:62
Alignment explanation
Indices: 91255461--91255718 Score: 293
Period size: 62 Copynumber: 4.2 Consensus size: 62
91255451 TGAACGGTCG
* * * *
91255461 TGTAACTCACTGTTCATTGTATAAAACCACATGGCCAGGGATACGGGCGCGTGCCCAGGCCA
1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA
* * * * * * *
91255523 TGTAGCTCACTGTTCATAGTATAAAACCACATGGCTAGAGACACAGGCGTGTGCCCAGGTCG
1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA
* * * * * * *
91255585 TGCAACTCATTGTT-ATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCTAGGTCG
1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA
* * * * *
91255646 TGTAACTCACTGTTCATAGTATAAAACCATACGGTCAGGGACAGGGGTGTGTGCCCAGGCTA
1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA
*
91255708 TGTGACTCACT
1 TGTAACTCACT
91255719 ATTTGTACTT
Statistics
Matches: 163, Mismatches: 32, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
61 52 0.32
62 111 0.68
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (62 bp):
TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA
Found at i:91255704 original size:123 final size:124
Alignment explanation
Indices: 91255456--91255679 Score: 315
Period size: 123 Copynumber: 1.8 Consensus size: 124
91255446 CTGTGTGAAC
* * * * * *
91255456 GGTCGTGTAACTCACTGTTCATTGTATAAAACCACATGGCCAGGGATACGGGCGCGTGCCCAGGC
1 GGTCGTGCAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCACGTGCCCAGGC
* *
91255521 CATGTAGCTCACTGTTCATAGTATAAAACCACATGGCTAGAGACACAGGCGTGTGCCCA
66 CATGTAACTCACTGTTCATAGTATAAAACCACACGGCTAGAGACACAGGCGTGTGCCCA
* * * *
91255580 GGTCGTGCAACTCATTGTT-ATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCTAGGT
1 GGTCGTGCAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCACGTGCCCAGGC
* *
91255644 CGTGTAACTCACTGTTCATAGTATAAAACCATACGG
66 CATGTAACTCACTGTTCATAGTATAAAACCACACGG
91255680 TCAGGGACAG
Statistics
Matches: 86, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
123 69 0.80
124 17 0.20
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (124 bp):
GGTCGTGCAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCACGTGCCCAGGC
CATGTAACTCACTGTTCATAGTATAAAACCACACGGCTAGAGACACAGGCGTGTGCCCA
Found at i:91258873 original size:5 final size:5
Alignment explanation
Indices: 91258865--91258895 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
91258855 GATACATTAC
91258865 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT A
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT A
91258896 CTGTGCCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:91260440 original size:8 final size:7
Alignment explanation
Indices: 91260413--91260438 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91260403 TTTGGTTCTT
91260413 TTTTTAA
1 TTTTTAA
91260420 TTTTTAA
1 TTTTTAA
91260427 TTTTTAA
1 TTTTTAA
91260434 TTTTT
1 TTTTT
91260439 TATTACACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:91262424 original size:93 final size:93
Alignment explanation
Indices: 91262287--91262499 Score: 293
Period size: 93 Copynumber: 2.3 Consensus size: 93
91262277 AATTTTTTTC
* * * *
91262287 AAAATAAGCAATTAAGTCCCTAAC-TTTTTTTTGCACTCATTTGGGTGCTTGAACTTTCAAAATG
1 AAAAAAAGCAATTAAGCCCCT-ACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATG
* ***
91262351 CATTAAAAAGGTCCTCAAACCTTTTCAAA
65 CATCAAAAAAACCCTCAAACCTTTTCAAA
* *
91262380 AAAAAAAGCAATTAAGCCCCTACTTTTTTTTTGCACTTAATTGGGTACTTGAACTTTCAAAATGT
1 AAAAAAAGCAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGC
*
91262445 ATCAAAAAAACCCTCAAACTTTTTCAAA
66 ATCAAAAAAACCCTCAAACCTTTTCAAA
* *
91262473 AAAAAAAACAATTAAGCCCCTGCTTTT
1 AAAAAAAGCAATTAAGCCCCTACTTTT
91262500 ATTAAAAAAT
Statistics
Matches: 106, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
92 2 0.02
93 104 0.98
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (93 bp):
AAAAAAAGCAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGC
ATCAAAAAAACCCTCAAACCTTTTCAAA
Found at i:91262629 original size:11 final size:11
Alignment explanation
Indices: 91262576--91262698 Score: 54
Period size: 10 Copynumber: 12.1 Consensus size: 11
91262566 TAAAAAATTC
91262576 AAATAT-TAAA
1 AAATATATAAA
*
91262586 AAAT-TATTAA
1 AAATATATAAA
*
91262596 AAAT-TAGAAAA
1 AAATATA-TAAA
* *
91262607 AAAAATCTTAAA
1 AAATAT-ATAAA
91262619 AAATATATAAA
1 AAATATATAAA
*
91262630 AAA-GTAT-AA
1 AAATATATAAA
* *
91262639 AATTTTAT-AA
1 AAATATATAAA
*
91262649 AAATA-GTAAA
1 AAATATATAAA
*
91262659 AAAT-T-TATA
1 AAATATATAAA
*
91262668 AAATATAT-AG
1 AAATATATAAA
91262678 AAATATAT-AA
1 AAATATATAAA
91262688 AAAT-TATAAA
1 AAATATATAAA
91262698 A
1 A
91262699 TTTTATAAAG
Statistics
Matches: 85, Mismatches: 18, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
9 16 0.19
10 47 0.55
11 13 0.15
12 9 0.11
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (11 bp):
AAATATATAAA
Found at i:91262641 original size:29 final size:29
Alignment explanation
Indices: 91262608--91262707 Score: 107
Period size: 29 Copynumber: 3.4 Consensus size: 29
91262598 ATTAGAAAAA
*
91262608 AAAATCTTA-AAAAATATATAAAAAAGTAT
1 AAAAT-TTATAAAAATATATAAAAAATTAT
*
91262637 AAAATTTTATAAAAATAGTA-AAAAATTTAT
1 AAAA-TTTATAAAAATA-TATAAAAAATTAT
* *
91262667 AAAATATATAGAAATATAT-AAAAATTAT
1 AAAATTTATAAAAATATATAAAAAATTAT
91262695 AAAATTTTATAAA
1 AAAA-TTTATAAA
91262708 GTTGTAAGAA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
28 14 0.24
29 23 0.39
30 20 0.34
31 2 0.03
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (29 bp):
AAAATTTATAAAAATATATAAAAAATTAT
Found at i:91262705 original size:19 final size:19
Alignment explanation
Indices: 91262628--91262707 Score: 76
Period size: 19 Copynumber: 4.2 Consensus size: 19
91262618 AAAATATATA
*
91262628 AAAAAGTATAAAATTTTAT
1 AAAAATTATAAAATTTTAT
*
91262647 AAAAA-TAGTAAAAAATTTAT
1 AAAAATTA-T-AAAATTTTAT
*
91262667 -AAAATATATAGAAA-TATAT
1 AAAAAT-TATA-AAATTTTAT
91262686 AAAAATTATAAAATTTTAT
1 AAAAATTATAAAATTTTAT
91262705 AAA
1 AAA
91262708 GTTGTAAGAA
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
18 5 0.10
19 26 0.51
20 18 0.35
21 2 0.04
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (19 bp):
AAAAATTATAAAATTTTAT
Found at i:91262705 original size:21 final size:20
Alignment explanation
Indices: 91262624--91262707 Score: 86
Period size: 20 Copynumber: 4.3 Consensus size: 20
91262614 TTAAAAAATA
91262624 TATAAAAAAGTATAAAATTT
1 TATAAAAAAGTATAAAATTT
*
91262644 TATAAAAATAGTA-AAAAATT
1 TATAAAAA-AGTATAAAATTT
* *
91262664 TATAAAATA-TATAGAAA-TA
1 TATAAAAAAGTATA-AAATTT
*
91262683 TAT-AAAAATTATAAAATTT
1 TATAAAAAAGTATAAAATTT
91262702 TATAAA
1 TATAAA
91262708 GTTGTAAGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
18 9 0.17
19 14 0.26
20 26 0.49
21 4 0.08
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (20 bp):
TATAAAAAAGTATAAAATTT
Found at i:91262737 original size:21 final size:21
Alignment explanation
Indices: 91262637--91262739 Score: 60
Period size: 21 Copynumber: 5.1 Consensus size: 21
91262627 AAAAAAGTAT
* *
91262637 AAAATTTTATAAAAATAGTAA-
1 AAAATTATATAAAGAT-GTAAG
*
91262658 AAAATT-TATAAA-ATATATAG
1 AAAATTATATAAAGATGTA-AG
* *
91262678 -AAA-TATATAAAAAT-T-AT
1 AAAATTATATAAAGATGTAAG
* *
91262695 AAAATTTTATAAAGTTGTAAG
1 AAAATTATATAAAGATGTAAG
91262716 AAAATTATATAAA-ATGTAAAG
1 AAAATTATATAAAGATGT-AAG
91262737 AAA
1 AAA
91262740 TATAAATTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
17 1 0.02
18 6 0.09
19 21 0.32
20 12 0.18
21 25 0.38
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (21 bp):
AAAATTATATAAAGATGTAAG
Found at i:91262743 original size:19 final size:19
Alignment explanation
Indices: 91262644--91262743 Score: 57
Period size: 19 Copynumber: 5.2 Consensus size: 19
91262634 TATAAAATTT
91262644 TATA-AAAATAGTAAA-AAA
1 TATATAAAAT-GTAAAGAAA
* * *
91262662 TTTATAAAATATATAGAAA
1 TATATAAAATGTAAAGAAA
*
91262681 TATATAAAAAT-TATAA-AAT
1 TATAT-AAAATGTA-AAGAAA
* *
91262700 TTTATAAAGTTGT-AAGAAAA
1 TATATAAA-ATGTAAAG-AAA
91262720 TTATATAAAATGTAAAGAAA
1 -TATATAAAATGTAAAGAAA
91262740 TATA
1 TATA
91262744 AATTTCATAA
Statistics
Matches: 61, Mismatches: 11, Indels: 19
0.67 0.12 0.21
Matches are distributed among these distances:
18 11 0.18
19 25 0.41
20 15 0.25
21 10 0.16
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (19 bp):
TATATAAAATGTAAAGAAA
Found at i:91262764 original size:57 final size:57
Alignment explanation
Indices: 91262615--91262743 Score: 170
Period size: 58 Copynumber: 2.2 Consensus size: 57
91262605 AAAAAAATCT
*
91262615 TAAA-AAATATATAAAAAAGTATAAAATTTTATAAAAATAGTAAAAAATTTATAAAATA
1 TAAAGAAATATAT-AAAAATTATAAAATTTTAT-AAAATAGTAAAAAATTTATAAAATA
* * * *
91262673 TATAGAAATATATAAAAATTATAAAATTTTATAAAGTTGTAAGAAAATTATATAAAATG
1 TAAAGAAATATATAAAAATTATAAAATTTTATAAAATAGTAA-AAAATT-TATAAAATA
91262732 TAAAGAAATATA
1 TAAAGAAATATA
91262744 AATTTCATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
57 8 0.13
58 27 0.44
59 27 0.44
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (57 bp):
TAAAGAAATATATAAAAATTATAAAATTTTATAAAATAGTAAAAAATTTATAAAATA
Found at i:91262943 original size:29 final size:29
Alignment explanation
Indices: 91262900--91262961 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
91262890 TAGGGGTCGT
91262900 TAATTTTTTTATATTCTTTATT-AATTTTTA
1 TAATTTTTTTATATT-TTT-TTAAATTTTTA
91262930 TAATTTTTTT-TATTTTTTTAAAATTTTTA
1 TAATTTTTTTATATTTTTTT-AAATTTTTA
91262959 TAA
1 TAA
91262962 AAAAAGTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
27 2 0.07
28 3 0.10
29 15 0.50
30 10 0.33
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (29 bp):
TAATTTTTTTATATTTTTTTAAATTTTTA
Found at i:91262946 original size:19 final size:20
Alignment explanation
Indices: 91262902--91262959 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
91262892 GGGGTCGTTA
91262902 ATTTTTTTAT-ATTCTTTATT
1 ATTTTTTTATAATT-TTTATT
* *
91262922 A-ATTTTTATAATTTTTTTT
1 ATTTTTTTATAATTTTTATT
*
91262941 ATTTTTTTAAAATTTTTAT
1 ATTTTTTTATAATTTTTAT
91262960 AAAAAAAGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTTTTTTATAATTTTTATT
Found at i:91263043 original size:19 final size:18
Alignment explanation
Indices: 91262995--91263045 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
91262985 TTTTAAATTT
91262995 TTTATATTTTTATTAAAA
1 TTTATATTTTTATTAAAA
*
91263013 TTTAATAATTTTT-CTAAAA
1 TTT-AT-ATTTTTATTAAAA
91263032 TTTATTATTTTTAT
1 TTTA-TATTTTTAT
91263046 AATTATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 10 0.37
19 11 0.41
20 6 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTATATTTTTATTAAAA
Found at i:91263053 original size:19 final size:18
Alignment explanation
Indices: 91262995--91263047 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
91262985 TTTTAAATTT
91262995 TTTA-TATTTTTATTAAAA
1 TTTATTATTTTTA-TAAAA
* *
91263013 TTTAATAATTTTTCTAAAA
1 TTT-ATTATTTTTATAAAA
91263032 TTTATTATTTTTATAA
1 TTTATTATTTTTATAA
91263048 TTATTTTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 14 0.48
19 9 0.31
20 6 0.21
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTATTATTTTTATAAAA
Found at i:91263224 original size:89 final size:89
Alignment explanation
Indices: 91263069--91263292 Score: 276
Period size: 89 Copynumber: 2.5 Consensus size: 89
91263059 AATTTTTAAT
* * * * * *
91263069 AAGAGTAGTGACTTAATTGCTTTTTTGAAAAATTTTGAAGG-TCTTTTTATGCATTTTAAAAGTT
1 AAGAGTAGGGGCTTAATTACTTTTTTCAAAAAGTTTGAAGGCTTTTTTTATGCATTTTAAAAGTT
91263133 CAAGTACCCAATTGA-GTAAAAAA
66 CAAGTACCCAATTGAGGTAAAAAA
* *
91263156 AAGAGTAGGGGCTTAATTACTTTTTTTAAAGAAGTTTGAAGGCTTTTTTTATGCATTTTGAAAGT
1 AAGAGTAGGGGCTTAATTACTTTTTTCAAA-AAGTTTGAAGGCTTTTTTTATGCATTTTAAAAGT
* *
91263221 TCAAGTGCTCAATTGAGTGTAAAAAA
65 TCAAGTACCCAATTGAG-GTAAAAAA
* * *
91263247 AAAAG-AAGGGCTTAATTA-TTTTTTCAAAAAAGTTTGAGGGCTTTTT
1 AAGAGTAGGGGCTTAATTACTTTTTTC-AAAAAGTTTGAAGGCTTTTT
91263293 ACATAATTAA
Statistics
Matches: 119, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
87 26 0.22
88 10 0.08
89 56 0.47
90 15 0.13
91 12 0.10
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (89 bp):
AAGAGTAGGGGCTTAATTACTTTTTTCAAAAAGTTTGAAGGCTTTTTTTATGCATTTTAAAAGTT
CAAGTACCCAATTGAGGTAAAAAA
Found at i:91269110 original size:14 final size:14
Alignment explanation
Indices: 91269091--91269117 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91269081 GTTTGGCGGA
91269091 ATATTATAGGCAGG
1 ATATTATAGGCAGG
91269105 ATATTATAGGCAG
1 ATATTATAGGCAG
91269118 TTTGTCGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (14 bp):
ATATTATAGGCAGG
Found at i:91273357 original size:28 final size:28
Alignment explanation
Indices: 91273304--91273387 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
91273294 CACTTTGTGC
91273304 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
91273333 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
91273361 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
91273388 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:91273399 original size:23 final size:24
Alignment explanation
Indices: 91273308--91273401 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
91273298 TTGTGCTATT
91273308 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
91273335 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
91273365 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
91273388 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
91273402 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:91281247 original size:59 final size:60
Alignment explanation
Indices: 91281109--91281234 Score: 200
Period size: 59 Copynumber: 2.1 Consensus size: 60
91281099 ATGAAAGCGC
*
91281109 ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAATGATTTCATTTTGGGTAACCAAA
1 ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA
** * *
91281169 ATGAAAGCTCCCTAAAAGTTG-GTGAGGAAATTGCAAAGATTTCATTTTTGGTGACCAAA
1 ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA
91281228 ATGAAAG
1 ATGAAAG
91281235 TGTCTTAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
59 40 0.66
60 21 0.34
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (60 bp):
ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA
Found at i:91281991 original size:22 final size:22
Alignment explanation
Indices: 91281966--91282008 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
91281956 TCAAAGGTTG
* *
91281966 ATTTTGATTTGCAACCGATTTT
1 ATTTTGATTTGAAACCAATTTT
91281988 ATTTTGATTTGAAACCAATTT
1 ATTTTGATTTGAAACCAATTT
91282009 ACCGTGTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49
Consensus pattern (22 bp):
ATTTTGATTTGAAACCAATTTT
Found at i:91282639 original size:12 final size:12
Alignment explanation
Indices: 91282607--91282645 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
91282597 TAAAATTAAA
91282607 AAATTAA-AAC-
1 AAATTAAGAACT
91282617 AAATT-AGAACT
1 AAATTAAGAACT
91282628 AAATTAAGAACT
1 AAATTAAGAACT
91282640 AAATTA
1 AAATTA
91282646 TATTAATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 1 0.04
10 8 0.31
11 5 0.19
12 12 0.46
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.26
Consensus pattern (12 bp):
AAATTAAGAACT
Found at i:91282713 original size:15 final size:15
Alignment explanation
Indices: 91282693--91282722 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
91282683 TAAAAACAAC
91282693 AAAAAAAAGTAAAGT
1 AAAAAAAAGTAAAGT
91282708 AAAAAAAAGTAAAGT
1 AAAAAAAAGTAAAGT
91282723 TACTTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAAAAAAGTAAAGT
Found at i:91283873 original size:15 final size:15
Alignment explanation
Indices: 91283853--91283882 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91283843 TTTGATTTCA
91283853 ATTTTGATTTAGGTT
1 ATTTTGATTTAGGTT
*
91283868 ATTTTGATTTTGGTT
1 ATTTTGATTTAGGTT
91283883 TTATTTGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.63
Consensus pattern (15 bp):
ATTTTGATTTAGGTT
Found at i:91283879 original size:6 final size:6
Alignment explanation
Indices: 91283630--91283862 Score: 256
Period size: 6 Copynumber: 38.7 Consensus size: 6
91283620 ATTTTGATTT
* * * *
91283630 ATTTCG ATCTCA ATTTTG ATTTCG A-TTCTG ATTTCG ATTTTG ATTTCG
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTC-G ATTTCG ATTTCG ATTTCG
* * ** * *
91283678 ATTTCT ATTTCA ATTTCG ATTTTA ATTTCG ATTTTG ATTTC- ATTTTTG
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG A-TTTCG
**
91283726 ATTTCG A-TTCTG ATTTTTT ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
1 ATTTCG ATTTC-G A-TTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
91283775 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
* * * * *
91283823 ATTTCG ATTTCA ATTTCA ATTTTG ATTTCA ATTTTG ATTT
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTT
91283863 AGGTTATTTT
Statistics
Matches: 190, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
5 7 0.04
6 176 0.93
7 5 0.03
8 2 0.01
ACGTcount: A:0.19, C:0.13, G:0.12, T:0.55
Consensus pattern (6 bp):
ATTTCG
Found at i:91284188 original size:62 final size:61
Alignment explanation
Indices: 91284121--91284250 Score: 197
Period size: 62 Copynumber: 2.1 Consensus size: 61
91284111 TTATTGTCTA
* * *
91284121 TTATTGTATGCCATGTGTATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTATCAG
1 TTATTGTATGCCATGTGCATGACAAAAATGGTTGTATTTGTATTAAATTA-ATTTGTATCAG
* **
91284183 TTATTGTTTGCCATGTGCATGACAAAAATGGTTGTATTTGTATTAAATTAATTTGTATTGG
1 TTATTGTATGCCATGTGCATGACAAAAATGGTTGTATTTGTATTAAATTAATTTGTATCAG
91284244 TTATTGT
1 TTATTGT
91284251 CTAACAGAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
61 15 0.24
62 47 0.76
ACGTcount: A:0.27, C:0.06, G:0.19, T:0.48
Consensus pattern (61 bp):
TTATTGTATGCCATGTGCATGACAAAAATGGTTGTATTTGTATTAAATTAATTTGTATCAG
Done.