Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr07 97507971 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 97507971 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 232 characters in sequence are not A, C, G, or T File 306 of 328 Found at i:91059757 original size:24 final size:24 Alignment explanation
Indices: 91059724--91059779 Score: 94 Period size: 24 Copynumber: 2.3 Consensus size: 24 91059714 ACTTGCAGAA * 91059724 GCAGCAGCTCTTTGTCGAGCCTCT 1 GCAGCAGCTCTTTCTCGAGCCTCT * 91059748 GCAGCTGCTCTTTCTCGAGCCTCT 1 GCAGCAGCTCTTTCTCGAGCCTCT 91059772 GCAGCAGC 1 GCAGCAGC 91059780 CCTCTCCACA Statistics Matches: 29, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 24 29 1.00 ACGTcount: A:0.12, C:0.36, G:0.25, T:0.27 Consensus pattern (24 bp): GCAGCAGCTCTTTCTCGAGCCTCT Found at i:91062106 original size:15 final size:15 Alignment explanation
Indices: 91062086--91062115 Score: 60 Period size: 15 Copynumber: 2.0 Consensus size: 15 91062076 TAGTTTCAAG 91062086 TTCATTACAACATAC 1 TTCATTACAACATAC 91062101 TTCATTACAACATAC 1 TTCATTACAACATAC 91062116 AGACTTTTTT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33 Consensus pattern (15 bp): TTCATTACAACATAC Found at i:91067457 original size:17 final size:17 Alignment explanation
Indices: 91067399--91067457 Score: 54 Period size: 17 Copynumber: 3.5 Consensus size: 17 91067389 TAATAAATTT 91067399 AAAATATAA-TATATAA 1 AAAATATAATTATATAA 91067415 TAAAA-ATATATT-TAT-A 1 -AAAATATA-ATTATATAA * 91067431 AGAATAATAATTATATAA 1 AAAAT-ATAATTATATAA 91067449 AAAATATAA 1 AAAATATAA 91067458 AATATATTCG Statistics Matches: 34, Mismatches: 2, Indels: 12 0.71 0.04 0.25 Matches are distributed among these distances: 15 3 0.09 16 7 0.21 17 18 0.53 18 6 0.18 ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34 Consensus pattern (17 bp): AAAATATAATTATATAA Found at i:91067975 original size:17 final size:18 Alignment explanation
Indices: 91067955--91068100 Score: 219 Period size: 17 Copynumber: 8.3 Consensus size: 18 91067945 AAAATTGTAT 91067955 ATCATATCTAAG-TTGCA 1 ATCATATCTAAGATTGCA * 91067972 ATCATATCTAAGATTG-T 1 ATCATATCTAAGATTGCA 91067989 ATCATATCTAAGATTGCA 1 ATCATATCTAAGATTGCA * 91068007 ATCATATCTAAGATTG-T 1 ATCATATCTAAGATTGCA 91068024 ATCATATCTAAGATTGCA 1 ATCATATCTAAGATTGCA 91068042 ATCATATCTAAGATTGCA 1 ATCATATCTAAGATTGCA * 91068060 ATCATATCTAAGATTG-T 1 ATCATATCTAAGATTGCA * 91068077 ATCATATCGAAGATTGCAA 1 ATCATATCTAAGATTGC-A 91068096 ATCAT 1 ATCAT 91068101 TGAAGATTAT Statistics Matches: 117, Mismatches: 7, Indels: 8 0.89 0.05 0.06 Matches are distributed among these distances: 17 59 0.50 18 53 0.45 19 5 0.04 ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36 Consensus pattern (18 bp): ATCATATCTAAGATTGCA Found at i:91068013 original size:35 final size:35 Alignment explanation
Indices: 91067954--91068092 Score: 228 Period size: 35 Copynumber: 4.0 Consensus size: 35 91067944 TAAAATTGTA 91067954 TATCATATCTAAG-TTGCAATCATATCTAAGATTG 1 TATCATATCTAAGATTGCAATCATATCTAAGATTG 91067988 TATCATATCTAAGATTGCAATCATATCTAAGATTG 1 TATCATATCTAAGATTGCAATCATATCTAAGATTG 91068023 TATCATATCTAAGATTGCAATCATATCTAAGATTG 1 TATCATATCTAAGATTGCAATCATATCTAAGATTG * * * 91068058 CAATCATATCTAAGATTG-TATCATATCGAAGATTG 1 -TATCATATCTAAGATTGCAATCATATCTAAGATTG 91068093 CAAATCATTG Statistics Matches: 100, Mismatches: 3, Indels: 3 0.94 0.03 0.03 Matches are distributed among these distances: 34 13 0.13 35 71 0.71 36 16 0.16 ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37 Consensus pattern (35 bp): TATCATATCTAAGATTGCAATCATATCTAAGATTG Found at i:91068069 original size:53 final size:53 Alignment explanation
Indices: 91067955--91068100 Score: 233 Period size: 53 Copynumber: 2.8 Consensus size: 53 91067945 AAAATTGTAT * * 91067955 ATCATATCTAAG-TTGCAATCATATCTAAGATTG-TATCATATCTAAGATTGCA 1 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAATCATATCTAAGATTGCA 91068007 ATCATATCTAAGATTGTATCATATCTAAGATTGCAATCATATCTAAGATTGCA 1 ATCATATCTAAGATTGTATCATATCTAAGATTGCAATCATATCTAAGATTGCA * 91068060 ATCATATCTAAGATTGTATCATATCGAAGATTGCAAATCAT 1 ATCATATCTAAGATTGTATCATATCTAAGATTGC-AATCAT 91068101 TGAAGATTAT Statistics Matches: 88, Mismatches: 3, Indels: 4 0.93 0.03 0.04 Matches are distributed among these distances: 52 28 0.32 53 54 0.61 54 6 0.07 ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36 Consensus pattern (53 bp): ATCATATCTAAGATTGTATCATATCTAAGATTGCAATCATATCTAAGATTGCA Found at i:91083796 original size:18 final size:18 Alignment explanation
Indices: 91083769--91083809 Score: 55 Period size: 18 Copynumber: 2.3 Consensus size: 18 91083759 GATACGGATG * 91083769 CAGATGCAAATAAAGATA 1 CAGATACAAATAAAGATA * * 91083787 CAGATACAAATATAGTTA 1 CAGATACAAATAAAGATA 91083805 CAGAT 1 CAGAT 91083810 GTTGATACAT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 18 20 1.00 ACGTcount: A:0.51, C:0.12, G:0.15, T:0.22 Consensus pattern (18 bp): CAGATACAAATAAAGATA Found at i:91089039 original size:78 final size:78 Alignment explanation
Indices: 91088940--91089096 Score: 314 Period size: 78 Copynumber: 2.0 Consensus size: 78 91088930 AAATCCTTTC 91088940 TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA 1 TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA 91089005 TTTGTTTTGTGAT 66 TTTGTTTTGTGAT 91089018 TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA 1 TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA 91089083 TTTGTTTTGTGAT 66 TTTGTTTTGTGAT 91089096 T 1 T 91089097 CTTGGACTTG Statistics Matches: 79, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 78 79 1.00 ACGTcount: A:0.18, C:0.10, G:0.22, T:0.50 Consensus pattern (78 bp): TTTAGAAGCATTTGTTGATTTTTAAATATGCTCTTGTATCTTGCCTTGGCTTCTTTGGGATGGAA TTTGTTTTGTGAT Found at i:91092786 original size:25 final size:25 Alignment explanation
Indices: 91092705--91092786 Score: 110 Period size: 25 Copynumber: 3.3 Consensus size: 25 91092695 CCATTAGGGT * 91092705 TACCGATTTATAGCTCATGAGAGCA 1 TACCGATTTATAGCTCGTGAGAGCA * * * * 91092730 TGCCAATTGATAGCTCGTGAAAGCA 1 TACCGATTTATAGCTCGTGAGAGCA * 91092755 TATCGATTTATAGCTCGTGAGAGCA 1 TACCGATTTATAGCTCGTGAGAGCA 91092780 TACCGAT 1 TACCGAT 91092787 CTTTGGTTCA Statistics Matches: 46, Mismatches: 11, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 25 46 1.00 ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28 Consensus pattern (25 bp): TACCGATTTATAGCTCGTGAGAGCA Found at i:91093818 original size:15 final size:15 Alignment explanation
Indices: 91093786--91093814 Score: 51 Period size: 14 Copynumber: 2.0 Consensus size: 15 91093776 ATTTTCTATG 91093786 TTTATTATGTGTGAA 1 TTTATTATGTGTGAA 91093801 TTTA-TATGTGTGAA 1 TTTATTATGTGTGAA 91093815 ATTTTCATGA Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 14 10 0.71 15 4 0.29 ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52 Consensus pattern (15 bp): TTTATTATGTGTGAA Found at i:91095014 original size:45 final size:44 Alignment explanation
Indices: 91094941--91095073 Score: 119 Period size: 45 Copynumber: 3.0 Consensus size: 44 91094931 ATAGGATCCA * * * * 91094941 ATATGTGTTTTCGTGTAAAACCACGTCTGCGACATTGGCATCGAT 1 ATATGTG-ATTCGTGTAAGACCATGTCTGAGACATTGGCATCGAT * ** * 91094986 ATATGTGGTTACGTGTAAGACCATGTCTGAGACATCAGCATTG-T 1 ATATGTGATT-CGTGTAAGACCATGTCTGAGACATTGGCATCGAT * * * * 91095030 AT-T-TGATTTGTGTAAGACCCTGTCTGGGACAGTGGCATCGAT 1 ATATGTGATTCGTGTAAGACCATGTCTGAGACATTGGCATCGAT 91095072 AT 1 AT 91095074 GAGATAGCAT Statistics Matches: 71, Mismatches: 15, Indels: 7 0.76 0.16 0.08 Matches are distributed among these distances: 41 25 0.35 42 7 0.10 43 1 0.01 44 5 0.07 45 33 0.46 ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33 Consensus pattern (44 bp): ATATGTGATTCGTGTAAGACCATGTCTGAGACATTGGCATCGAT Found at i:91105868 original size:9 final size:9 Alignment explanation
Indices: 91105853--91105884 Score: 55 Period size: 9 Copynumber: 3.6 Consensus size: 9 91105843 TATTGATATG 91105853 TTTTGAAAT 1 TTTTGAAAT * 91105862 GTTTGAAAT 1 TTTTGAAAT 91105871 TTTTGAAAT 1 TTTTGAAAT 91105880 TTTTG 1 TTTTG 91105885 TCCGTTTGAT Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 21 1.00 ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56 Consensus pattern (9 bp): TTTTGAAAT Found at i:91110688 original size:23 final size:23 Alignment explanation
Indices: 91110662--91110705 Score: 61 Period size: 23 Copynumber: 1.9 Consensus size: 23 91110652 CGCAAAAATA * * 91110662 ATTAAATGTTAAATTTCATGTCT 1 ATTAAATGTGAAATTACATGTCT * 91110685 ATTATATGTGAAATTACATGT 1 ATTAAATGTGAAATTACATGT 91110706 GTGAAATTTT Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 23 18 1.00 ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45 Consensus pattern (23 bp): ATTAAATGTGAAATTACATGTCT Found at i:91113083 original size:46 final size:46 Alignment explanation
Indices: 91113022--91113163 Score: 221 Period size: 46 Copynumber: 3.0 Consensus size: 46 91113012 TGATGTACAA * 91113022 GATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTAT 1 GATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT 91113068 GATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT 1 GATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT * ** * 91113114 GAGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTAT 1 GA--TATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT 91113162 GA 1 GA 91113164 GATGTGTATA Statistics Matches: 89, Mismatches: 5, Indels: 2 0.93 0.05 0.02 Matches are distributed among these distances: 46 47 0.53 48 42 0.47 ACGTcount: A:0.37, C:0.08, G:0.24, T:0.30 Consensus pattern (46 bp): GATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT Found at i:91113146 original size:48 final size:47 Alignment explanation
Indices: 91113029--91113164 Score: 211 Period size: 48 Copynumber: 2.9 Consensus size: 47 91113019 CAAGATATAT * * * 91113029 ATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGA-TATAT 1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGCATAC * 91113075 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGCCATGC 1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG-CATAC * 91113123 ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG 1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG 91113165 ATGTGTATAT Statistics Matches: 83, Mismatches: 5, Indels: 2 0.92 0.06 0.02 Matches are distributed among these distances: 46 40 0.48 48 43 0.52 ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29 Consensus pattern (47 bp): ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGCATAC Found at i:91116046 original size:71 final size:71 Alignment explanation
Indices: 91115969--91116111 Score: 277 Period size: 71 Copynumber: 2.0 Consensus size: 71 91115959 CATAAACACA 91115969 AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTCGCATGGCCGTACACACATACATCAC 1 AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTCGCATGGCCGTACACACATACATCAC 91116034 AAAAGT 66 AAAAGT * 91116040 AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTTGCATGGCCGTACACACATACATCAC 1 AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTCGCATGGCCGTACACACATACATCAC 91116105 AAAAGT 66 AAAAGT 91116111 A 1 A 91116112 CTTGAAAAAC Statistics Matches: 71, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 71 71 1.00 ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26 Consensus pattern (71 bp): AATGGTCTAATGCCATACTCCACTTCTACGAGCCATTTTCGCATGGCCGTACACACATACATCAC AAAAGT Found at i:91116657 original size:40 final size:39 Alignment explanation
Indices: 91116597--91116760 Score: 159 Period size: 40 Copynumber: 4.1 Consensus size: 39 91116587 CGGAATTTAA * ** * 91116597 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC * *** * 91116637 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC * 91116677 CCGGATATAACAACTCGCATGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACAACTCGCA-CAATGCCTTCGGGTCTTAGC * * * 91116717 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC 1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC 91116757 CCGG 1 CCGG 91116761 GTATTATTCA Statistics Matches: 104, Mismatches: 17, Indels: 6 0.82 0.13 0.05 Matches are distributed among these distances: 40 101 0.97 41 3 0.03 ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25 Consensus pattern (39 bp): CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC Found at i:91119810 original size:5 final size:5 Alignment explanation
Indices: 91119800--91119834 Score: 61 Period size: 5 Copynumber: 7.0 Consensus size: 5 91119790 AATTTCACAT * 91119800 ATATA ATATA ATATA ATATA ATATA ATGTA ATATA 1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA 91119835 CTAACTAAAA Statistics Matches: 28, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 5 28 1.00 ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40 Consensus pattern (5 bp): ATATA Found at i:91120020 original size:20 final size:21 Alignment explanation
Indices: 91119997--91120036 Score: 64 Period size: 20 Copynumber: 2.0 Consensus size: 21 91119987 TTTCAAATAA * 91119997 CATTTTTTATTTTT-ATTTTT 1 CATTTTTCATTTTTCATTTTT 91120017 CATTTTTCATTTTTCATTTT 1 CATTTTTCATTTTTCATTTT 91120037 CGGAAAACAA Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 20 13 0.72 21 5 0.28 ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75 Consensus pattern (21 bp): CATTTTTCATTTTTCATTTTT Found at i:91120023 original size:14 final size:14 Alignment explanation
Indices: 91119997--91120036 Score: 64 Period size: 13 Copynumber: 2.9 Consensus size: 14 91119987 TTTCAAATAA * 91119997 CATTTTTTATTTTT 1 CATTTTTCATTTTT 91120011 -ATTTTTCATTTTT 1 CATTTTTCATTTTT 91120024 CATTTTTCATTTT 1 CATTTTTCATTTT 91120037 CGGAAAACAA Statistics Matches: 24, Mismatches: 1, Indels: 2 0.89 0.04 0.07 Matches are distributed among these distances: 13 12 0.50 14 12 0.50 ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75 Consensus pattern (14 bp): CATTTTTCATTTTT Found at i:91120056 original size:6 final size:7 Alignment explanation
Indices: 91119997--91120036 Score: 64 Period size: 7 Copynumber: 5.9 Consensus size: 7 91119987 TTTCAAATAA 91119997 CATTTTT 1 CATTTTT * 91120004 TATTTTT 1 CATTTTT 91120011 -ATTTTT 1 CATTTTT 91120017 CATTTTT 1 CATTTTT 91120024 CATTTTT 1 CATTTTT 91120031 CATTTT 1 CATTTT 91120037 CGGAAAACAA Statistics Matches: 31, Mismatches: 1, Indels: 2 0.91 0.03 0.06 Matches are distributed among these distances: 6 6 0.19 7 25 0.81 ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75 Consensus pattern (7 bp): CATTTTT Found at i:91125405 original size:14 final size:14 Alignment explanation
Indices: 91125370--91125407 Score: 51 Period size: 14 Copynumber: 2.7 Consensus size: 14 91125360 TAACAAAAAC 91125370 CATTTTTTTATTTT 1 CATTTTTTTATTTT * 91125384 C-TAATTTTTATTTT 1 CAT-TTTTTTATTTT 91125398 CATTTTTTTA 1 CATTTTTTTA 91125408 AAATCATTTT Statistics Matches: 20, Mismatches: 2, Indels: 4 0.77 0.08 0.15 Matches are distributed among these distances: 13 1 0.05 14 18 0.90 15 1 0.05 ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74 Consensus pattern (14 bp): CATTTTTTTATTTT Found at i:91125838 original size:23 final size:23 Alignment explanation
Indices: 91125811--91125861 Score: 59 Period size: 23 Copynumber: 2.2 Consensus size: 23 91125801 GGATTTAAAC * 91125811 AAATAACCATA-TTTATATTATTA 1 AAATAACCATATTTTATACTA-TA ** 91125834 AAATATTCATATTTTATACTATA 1 AAATAACCATATTTTATACTATA 91125857 AAATA 1 AAATA 91125862 TTTATTATTA Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 23 16 0.67 24 8 0.33 ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43 Consensus pattern (23 bp): AAATAACCATATTTTATACTATA Found at i:91125870 original size:24 final size:24 Alignment explanation
Indices: 91125818--91125863 Score: 69 Period size: 23 Copynumber: 2.0 Consensus size: 24 91125808 AACAAATAAC * 91125818 CATA-TTTATATTATTAAAATATT 1 CATATTTTATACTATTAAAATATT 91125841 CATATTTTATACTA-TAAAATATT 1 CATATTTTATACTATTAAAATATT 91125864 TATTATTAAA Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 23 13 0.62 24 8 0.38 ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50 Consensus pattern (24 bp): CATATTTTATACTATTAAAATATT Found at i:91125910 original size:15 final size:15 Alignment explanation
Indices: 91125855--91125911 Score: 62 Period size: 14 Copynumber: 3.6 Consensus size: 15 91125845 TTTTATACTA 91125855 TAAAATATTTATTAT 1 TAAAATATTTATTAT * 91125870 T-AAATATTTATGAATT 1 TAAAATATTTAT-TA-T 91125886 TAATATATATTTATTAT 1 TAA-A-ATATTTATTAT 91125903 TAAAATATT 1 TAAAATATT 91125912 AATAGATTTT Statistics Matches: 35, Mismatches: 2, Indels: 10 0.74 0.04 0.21 Matches are distributed among these distances: 14 10 0.29 15 7 0.20 16 3 0.09 17 5 0.14 18 2 0.06 19 8 0.23 ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53 Consensus pattern (15 bp): TAAAATATTTATTAT Found at i:91125986 original size:19 final size:18 Alignment explanation
Indices: 91125952--91125998 Score: 69 Period size: 18 Copynumber: 2.6 Consensus size: 18 91125942 ATATTACTCA * 91125952 TAATTTTAAA-TTATTAT 1 TAATTTAAAATTTATTAT 91125969 TAATGTTAAAATTTATTAT 1 TAAT-TTAAAATTTATTAT 91125988 TAATTTAAAAT 1 TAATTTAAAAT 91125999 CATAATATTA Statistics Matches: 27, Mismatches: 1, Indels: 3 0.87 0.03 0.10 Matches are distributed among these distances: 17 4 0.15 18 12 0.44 19 11 0.41 ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53 Consensus pattern (18 bp): TAATTTAAAATTTATTAT Found at i:91126007 original size:19 final size:19 Alignment explanation
Indices: 91125966--91126009 Score: 54 Period size: 19 Copynumber: 2.3 Consensus size: 19 91125956 TTTAAATTAT * * 91125966 TATTAATGTTAAAATTTAT 1 TATTAATGTTAAAATATAA 91125985 TATTAAT-TTAAAATCATAA 1 TATTAATGTTAAAAT-ATAA 91126004 TATTAA 1 TATTAA 91126010 ATTTTATTAA Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 18 7 0.32 19 15 0.68 ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48 Consensus pattern (19 bp): TATTAATGTTAAAATATAA Found at i:91126028 original size:32 final size:32 Alignment explanation
Indices: 91125969--91126030 Score: 81 Period size: 32 Copynumber: 1.9 Consensus size: 32 91125959 AAATTATTAT * * 91125969 TAATGTTAAAATTTATTATTAATTTAAAATCA 1 TAATATTAAAATTTATTATAAATTTAAAATCA * 91126001 TAATATTAAATTTTATTA-AAATATTAAAAT 1 TAATATTAAAATTTATTATAAAT-TTAAAAT 91126031 ATGTTAATAA Statistics Matches: 26, Mismatches: 3, Indels: 2 0.84 0.10 0.06 Matches are distributed among these distances: 31 3 0.12 32 23 0.88 ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47 Consensus pattern (32 bp): TAATATTAAAATTTATTATAAATTTAAAATCA Found at i:91127208 original size:21 final size:20 Alignment explanation
Indices: 91127162--91127208 Score: 51 Period size: 21 Copynumber: 2.3 Consensus size: 20 91127152 GATTTAAATG 91127162 AAATT-TTTTGAATAATTTA 1 AAATTATTTTGAATAATTTA * * 91127181 ACTATTATTTTGTAATATTTTA 1 A-AATTATTTTG-AATAATTTA 91127203 AAATTA 1 AAATTA 91127209 AATTACTAAA Statistics Matches: 22, Mismatches: 3, Indels: 4 0.76 0.10 0.14 Matches are distributed among these distances: 19 1 0.05 20 3 0.14 21 9 0.41 22 9 0.41 ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53 Consensus pattern (20 bp): AAATTATTTTGAATAATTTA Found at i:91129198 original size:3 final size:3 Alignment explanation
Indices: 91129192--91129220 Score: 58 Period size: 3 Copynumber: 9.7 Consensus size: 3 91129182 ATTAATATTA 91129192 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT 1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT 91129221 ATTATTATTG Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 26 1.00 ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69 Consensus pattern (3 bp): TTG Found at i:91129225 original size:3 final size:3 Alignment explanation
Indices: 91129219--91129255 Score: 65 Period size: 3 Copynumber: 12.3 Consensus size: 3 91129209 GTTGTTGTTG * 91129219 TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA T 1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T 91129256 ATTTCTTTTT Statistics Matches: 32, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 3 32 1.00 ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68 Consensus pattern (3 bp): TTA Found at i:91129234 original size:9 final size:9 Alignment explanation
Indices: 91129187--91129255 Score: 57 Period size: 9 Copynumber: 7.7 Consensus size: 9 91129177 CCGGTATTAA 91129187 TATTATTGT 1 TATTATTGT * * 91129196 TGTTGTTGT 1 TATTATTGT * * 91129205 TGTTGTTGT 1 TATTATTGT * * * 91129214 TGTTGTTAT 1 TATTATTGT 91129223 TATTATTGT 1 TATTATTGT * 91129232 TATTATTAT 1 TATTATTGT * 91129241 TATTATTAT 1 TATTATTGT 91129250 TATTAT 1 TATTAT 91129256 ATTTCTTTTT Statistics Matches: 53, Mismatches: 7, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 9 53 1.00 ACGTcount: A:0.19, C:0.00, G:0.14, T:0.67 Consensus pattern (9 bp): TATTATTGT Found at i:91136832 original size:11 final size:11 Alignment explanation
Indices: 91136818--91136858 Score: 55 Period size: 11 Copynumber: 3.7 Consensus size: 11 91136808 TATTTTCTCC 91136818 CTATTTTGCTA 1 CTATTTTGCTA * 91136829 CTATTTTACTA 1 CTATTTTGCTA * * 91136840 TTATATTGCTA 1 CTATTTTGCTA 91136851 CTATTTTG 1 CTATTTTG 91136859 TTGTTATTGT Statistics Matches: 24, Mismatches: 6, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 11 24 1.00 ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56 Consensus pattern (11 bp): CTATTTTGCTA Found at i:91136942 original size:30 final size:29 Alignment explanation
Indices: 91136895--91136956 Score: 90 Period size: 30 Copynumber: 2.1 Consensus size: 29 91136885 ACTTATTTTA 91136895 TTGTTAATTTTTTATTATTGTA-AAGACAT 1 TTGTTAATTTTTTATTATTGTAGAA-ACAT * 91136924 TTGTTAATTTTGTTATTATTTTAGAAACAT 1 TTGTTAATTTT-TTATTATTGTAGAAACAT 91136954 TTG 1 TTG 91136957 CTTGTTAAGT Statistics Matches: 30, Mismatches: 1, Indels: 3 0.88 0.03 0.09 Matches are distributed among these distances: 29 11 0.37 30 17 0.57 31 2 0.07 ACGTcount: A:0.29, C:0.03, G:0.11, T:0.56 Consensus pattern (29 bp): TTGTTAATTTTTTATTATTGTAGAAACAT Found at i:91137060 original size:18 final size:18 Alignment explanation
Indices: 91137039--91137077 Score: 53 Period size: 18 Copynumber: 2.2 Consensus size: 18 91137029 GAAATATTTA * 91137039 TTTGAT-GTTTTTAGTATT 1 TTTGATGGTTTATA-TATT 91137057 TTTGATGGTTTATATATT 1 TTTGATGGTTTATATATT 91137075 TTT 1 TTT 91137078 TAAAATTATA Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 18 13 0.68 19 6 0.32 ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67 Consensus pattern (18 bp): TTTGATGGTTTATATATT Found at i:91137077 original size:19 final size:18 Alignment explanation
Indices: 91137032--91137078 Score: 51 Period size: 19 Copynumber: 2.5 Consensus size: 18 91137022 TTGTTGAGAA * 91137032 ATATTTATTTGATGTTTTT 1 ATATTT-TTTGATGTTTAT 91137051 AGTA-TTTTTGATGGTTTAT 1 A-TATTTTTTGAT-GTTTAT 91137070 ATATTTTTT 1 ATATTTTTT 91137079 AAAATTATAT Statistics Matches: 24, Mismatches: 1, Indels: 6 0.77 0.03 0.19 Matches are distributed among these distances: 18 8 0.33 19 14 0.58 20 2 0.08 ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66 Consensus pattern (18 bp): ATATTTTTTGATGTTTAT Found at i:91137100 original size:12 final size:12 Alignment explanation
Indices: 91137079--91137112 Score: 50 Period size: 12 Copynumber: 2.8 Consensus size: 12 91137069 TATATTTTTT * 91137079 AAAATTATATAA 1 AAAATAATATAA 91137091 AAAATAATATAA 1 AAAATAATATAA * 91137103 AAATTAATAT 1 AAAATAATAT 91137113 GGGCGGGCCT Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 12 20 1.00 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (12 bp): AAAATAATATAA Found at i:91137360 original size:30 final size:31 Alignment explanation
Indices: 91137326--91137383 Score: 109 Period size: 31 Copynumber: 1.9 Consensus size: 31 91137316 TATTTTGATG 91137326 AGATGGATATTG-TTTTTTTTTAAAAAACAC 1 AGATGGATATTGTTTTTTTTTTAAAAAACAC 91137356 AGATGGATATTGTTTTTTTTTTAAAAAA 1 AGATGGATATTGTTTTTTTTTTAAAAAA 91137384 AACACTCTAA Statistics Matches: 27, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 30 12 0.44 31 15 0.56 ACGTcount: A:0.36, C:0.03, G:0.14, T:0.47 Consensus pattern (31 bp): AGATGGATATTGTTTTTTTTTTAAAAAACAC Found at i:91138943 original size:66 final size:66 Alignment explanation
Indices: 91138866--91139001 Score: 272 Period size: 66 Copynumber: 2.1 Consensus size: 66 91138856 TACATACAAA 91138866 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA 1 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA 91138931 T 66 T 91138932 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA 1 CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA 91138997 T 66 T 91138998 CAGA 1 CAGA 91139002 AAACATGCCC Statistics Matches: 70, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 66 70 1.00 ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25 Consensus pattern (66 bp): CAGATAATAGAATACAAATAGTTCGACCTTAGCCATACAGGTATCGCATGCATAACAATTAGATA T Found at i:91140214 original size:22 final size:22 Alignment explanation
Indices: 91140171--91140214 Score: 54 Period size: 23 Copynumber: 2.0 Consensus size: 22 91140161 ACGGGAAATC ** 91140171 GAAAGAAAAGAAAAACGGAGAA 1 GAAAGAAAAGAAAAACAAAGAA 91140193 GAAAGAAAAAGAAAAA-AAAGAA 1 GAAAG-AAAAGAAAAACAAAGAA 91140215 AAGAATTTTG Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 22 9 0.47 23 10 0.53 ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00 Consensus pattern (22 bp): GAAAGAAAAGAAAAACAAAGAA Found at i:91143957 original size:17 final size:17 Alignment explanation
Indices: 91143935--91143967 Score: 57 Period size: 17 Copynumber: 1.9 Consensus size: 17 91143925 ACAAGGGAGA 91143935 AAAAGAAAGAAAGAAAG 1 AAAAGAAAGAAAGAAAG * 91143952 AAAAGAAAGGAAGAAA 1 AAAAGAAAGAAAGAAA 91143968 AGAGAAAATT Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 17 15 1.00 ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00 Consensus pattern (17 bp): AAAAGAAAGAAAGAAAG Found at i:91143958 original size:13 final size:13 Alignment explanation
Indices: 91143936--91143970 Score: 54 Period size: 13 Copynumber: 2.8 Consensus size: 13 91143926 CAAGGGAGAA 91143936 AAAG-AAAGAAAG 1 AAAGAAAAGAAAG 91143948 AAAGAAAAGAAAG 1 AAAGAAAAGAAAG * 91143961 GAAGAAAAGA 1 AAAGAAAAGA 91143971 GAAAATTAAA Statistics Matches: 21, Mismatches: 1, Indels: 1 0.91 0.04 0.04 Matches are distributed among these distances: 12 4 0.19 13 17 0.81 ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00 Consensus pattern (13 bp): AAAGAAAAGAAAG Found at i:91144946 original size:51 final size:53 Alignment explanation
Indices: 91144884--91145001 Score: 141 Period size: 51 Copynumber: 2.2 Consensus size: 53 91144874 ATGTGTCGAC * * 91144884 TACTGTGACTGTTCCGGATTCGTTCCGAAGAGGTAC-TCTGTACC-TGACTGT 1 TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTTCTGTACCGTGACTGT ** * * * * 91144935 TACTGTTACTGTTTTAGATTTGTTCCGATGAGGTACTTTGTGTACCGTTACTGT 1 TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTAC-TTCTGTACCGTGACTGT 91144989 TACTGTTACTGTT 1 TACTGTTACTGTT 91145002 ATTGTTACGG Statistics Matches: 56, Mismatches: 8, Indels: 3 0.84 0.12 0.04 Matches are distributed among these distances: 51 30 0.54 53 7 0.12 54 19 0.34 ACGTcount: A:0.17, C:0.19, G:0.23, T:0.42 Consensus pattern (53 bp): TACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTTCTGTACCGTGACTGT Found at i:91144998 original size:54 final size:51 Alignment explanation
Indices: 91144900--91145001 Score: 141 Period size: 54 Copynumber: 1.9 Consensus size: 51 91144890 GACTGTTCCG 91144900 GATTCGTTCCGAAGAGGTACTCTGTACCTGACTGTTACTGTTACTGTTTTA 1 GATTCGTTCCGAAGAGGTACTCTGTACCTGACTGTTACTGTTACTGTTTTA * * * * 91144951 GATTTGTTCCGATGAGGTACTTTGTGTACCGTTACTGTTACTGTTACTGTT 1 GATTCGTTCCGAAGAGGTAC--TCTGTACC-TGACTGTTACTGTTACTGTT 91145002 ATTGTTACGG Statistics Matches: 44, Mismatches: 4, Indels: 3 0.86 0.08 0.06 Matches are distributed among these distances: 51 18 0.41 53 7 0.16 54 19 0.43 ACGTcount: A:0.18, C:0.18, G:0.23, T:0.42 Consensus pattern (51 bp): GATTCGTTCCGAAGAGGTACTCTGTACCTGACTGTTACTGTTACTGTTTTA Found at i:91150126 original size:2 final size:2 Alignment explanation
Indices: 91150119--91150158 Score: 80 Period size: 2 Copynumber: 20.0 Consensus size: 2 91150109 GCTTTGATAG 91150119 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 91150159 AGTATAATTA Statistics Matches: 38, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 38 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:91151560 original size:40 final size:39 Alignment explanation
Indices: 91151456--91151563 Score: 155 Period size: 38 Copynumber: 2.8 Consensus size: 39 91151446 TGTGTGTCCG * 91151456 GGCTTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCC 1 GGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCC * * 91151495 GGGTTAAA-TCCCGCAGGCTTAGTGCTGGTATTATATTC 1 GGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCC * * 91151533 GAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT 1 G-GCTTAAAGTCCCGCAGGCTTAGTGCTGGT 91151564 GACTGGATTC Statistics Matches: 61, Mismatches: 6, Indels: 3 0.87 0.09 0.04 Matches are distributed among these distances: 38 29 0.48 39 13 0.21 40 19 0.31 ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32 Consensus pattern (39 bp): GGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATATCC Found at i:91156431 original size:11 final size:11 Alignment explanation
Indices: 91156415--91156439 Score: 50 Period size: 11 Copynumber: 2.3 Consensus size: 11 91156405 TTCATTTCCC 91156415 TTTAATATTAG 1 TTTAATATTAG 91156426 TTTAATATTAG 1 TTTAATATTAG 91156437 TTT 1 TTT 91156440 TTACAATTTT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60 Consensus pattern (11 bp): TTTAATATTAG Found at i:91163096 original size:25 final size:25 Alignment explanation
Indices: 91163027--91163122 Score: 86 Period size: 25 Copynumber: 3.8 Consensus size: 25 91163017 ATACACCACA * * * 91163027 GCTCTCACGAGATTC-CCATTATTTA 1 GCTCTCACGAGCTTCTCGA-TATTTG * * * * 91163052 GCTCTTATGAGCATCCCGATATTTG 1 GCTCTCACGAGCTTCTCGATATTTG * 91163077 GCTCTCACGAGTTTCTCGATATTTG 1 GCTCTCACGAGCTTCTCGATATTTG ** 91163102 GCTCTCTTGAGCTTCTCGATA 1 GCTCTCACGAGCTTCTCGATA 91163123 AATGACTCGC Statistics Matches: 56, Mismatches: 14, Indels: 2 0.78 0.19 0.03 Matches are distributed among these distances: 25 54 0.96 26 2 0.04 ACGTcount: A:0.19, C:0.26, G:0.18, T:0.38 Consensus pattern (25 bp): GCTCTCACGAGCTTCTCGATATTTG Found at i:91163155 original size:25 final size:25 Alignment explanation
Indices: 91163127--91163174 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 91163117 TCGATAAATG * 91163127 ACTCGCAAGAGCTTCCCGTTATACA 1 ACTCACAAGAGCTTCCCGTTATACA * * 91163152 ACTCACATGAGTTTCCCGTTATA 1 ACTCACAAGAGCTTCCCGTTATA 91163175 TGGCTCGAAA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29 Consensus pattern (25 bp): ACTCACAAGAGCTTCCCGTTATACA Found at i:91163620 original size:42 final size:42 Alignment explanation
Indices: 91163573--91163657 Score: 134 Period size: 42 Copynumber: 2.0 Consensus size: 42 91163563 AAATGGTAAG 91163573 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA 1 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA ** * * 91163615 TTAAATTCCATGTTTTATGAACTTACTAAGCTTAAATGCTTA 1 TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA 91163657 T 1 T 91163658 ATTGTTTCAT Statistics Matches: 39, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 42 39 1.00 ACGTcount: A:0.36, C:0.15, G:0.08, T:0.40 Consensus pattern (42 bp): TTAAATTCCATGTTAAACGAACTTACTAAACTTAAATGCTTA Found at i:91165992 original size:21 final size:22 Alignment explanation
Indices: 91165954--91165997 Score: 56 Period size: 21 Copynumber: 2.0 Consensus size: 22 91165944 TTCCCTGTTC * 91165954 TTTCTTTTTTTTTCTATT-TTA 1 TTTCTTTTTCTTTCTATTATTA 91165975 TTTCTTTATTCTTT-TATTATTA 1 TTTCTTT-TTCTTTCTATTATTA 91165997 T 1 T 91165998 ATTATATCAT Statistics Matches: 20, Mismatches: 1, Indels: 3 0.83 0.04 0.12 Matches are distributed among these distances: 21 11 0.55 22 9 0.45 ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77 Consensus pattern (22 bp): TTTCTTTTTCTTTCTATTATTA Found at i:91168726 original size:9 final size:9 Alignment explanation
Indices: 91168703--91168962 Score: 116 Period size: 9 Copynumber: 27.4 Consensus size: 9 91168693 TTTTTCCATA 91168703 AAAAATTATT 1 AAAAATTA-T * 91168713 AAAAAATCAT 1 -AAAAATTAT 91168723 AAAAATTTTAT 1 AAAAA--TTAT * 91168734 AAAAATCA- 1 AAAAATTAT * 91168742 AAACAAATAT 1 AAA-AATTAT 91168752 AAAAA-TAT 1 AAAAATTAT * 91168760 TAAAATTAAT 1 AAAAATT-AT * 91168770 ATAAACTTAT 1 A-AAAATTAT * 91168780 TAAAATTAT 1 AAAAATTAT 91168789 -AAAATATAT 1 AAAAAT-TAT 91168798 AAAAACTTAT 1 AAAAA-TTAT * 91168808 AAATATTAT 1 AAAAATTAT * 91168817 AAAAA-TAG 1 AAAAATTAT 91168825 AAAAATCTA- 1 AAAAAT-TAT * * 91168834 ATAAATCAT 1 AAAAATTAT 91168843 AAAAATTAT 1 AAAAATTAT 91168852 AAAAATTAAT 1 AAAAATT-AT * 91168862 AAAAAATAT 1 AAAAATTAT ** 91168871 TTAAATTAT 1 AAAAATTAT * 91168880 AAAAATAGAAT 1 AAAAAT--TAT * * 91168891 TAAAATTCTT 1 AAAAATT-AT * 91168901 AAAAAATAAT 1 -AAAAATTAT * * 91168911 AAAATTTGT 1 AAAAATTAT * 91168920 AAAATTTAT 1 AAAAATTAT * 91168929 AAAAAAAATAT 1 --AAAAATTAT * 91168940 TAAAATTGAT 1 AAAAATT-AT * 91168950 AAAACTTAT 1 AAAAATTAT 91168959 AAAA 1 AAAA 91168963 CGTACTAAAA Statistics Matches: 188, Mismatches: 40, Indels: 44 0.69 0.15 0.16 Matches are distributed among these distances: 8 23 0.12 9 87 0.46 10 38 0.20 11 40 0.21 ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32 Consensus pattern (9 bp): AAAAATTAT Found at i:91168792 original size:28 final size:27 Alignment explanation
Indices: 91168749--91168865 Score: 91 Period size: 28 Copynumber: 4.3 Consensus size: 27 91168739 TCAAAACAAA * * 91168749 TATAAAAATATTAAAAT-TAATATAAACT 1 TATAAAATTA-TAAAATAT-ATAAAAACT 91168777 TATTAAAATTATAAAATATATAAAAACT 1 TA-TAAAATTATAAAATATATAAAAACT * 91168805 TATAAATATTATAAAA-ATAGAAAAATCT 1 TATAAA-ATTATAAAATATATAAAAA-CT * * 91168833 AAT-AAATCATAAAA-ATTATAAAAA-T 1 TATAAAATTATAAAATA-TATAAAAACT 91168858 TAATAAAA 1 T-ATAAAA 91168866 AATATTTAAA Statistics Matches: 75, Mismatches: 7, Indels: 15 0.77 0.07 0.15 Matches are distributed among these distances: 25 1 0.01 26 11 0.15 27 24 0.32 28 31 0.41 29 8 0.11 ACGTcount: A:0.63, C:0.03, G:0.01, T:0.32 Consensus pattern (27 bp): TATAAAATTATAAAATATATAAAAACT Found at i:91168865 original size:19 final size:19 Alignment explanation
Indices: 91168703--91168962 Score: 96 Period size: 19 Copynumber: 13.7 Consensus size: 19 91168693 TTTTTCCATA * * 91168703 AAAAATTATTAAAAAATCAT 1 AAAAATTA-TAAAAATTAAT * 91168723 AAAAATTTTATAAAAATCAA- 1 AAAAA--TTATAAAAATTAAT 91168743 AACAAA-TATAAAAA-T-AT 1 AA-AAATTATAAAAATTAAT * * 91168760 TAAAATTAATATAAACTT-AT 1 AAAAATT-ATA-AAAATTAAT * 91168780 TAAAATTAT-AAAA-TATAT 1 AAAAATTATAAAAATTA-AT * 91168798 AAAAACTTATAAATATT-AT 1 AAAAA-TTATAAAAATTAAT * 91168817 AAAAA-TAGAAAAATCTAAT 1 AAAAATTATAAAAAT-TAAT * 91168836 --AAATCATAAAAATT-AT 1 AAAAATTATAAAAATTAAT * 91168852 AAAAATTAATAAAAAAT-AT 1 AAAAATT-ATAAAAATTAAT ** * 91168871 TTAAATTATAAAAATAGAAT 1 AAAAATTATAAAAAT-TAAT * * * 91168891 TAAAATTCTTAAAAAATAAT 1 AAAAATT-ATAAAAATTAAT * * * * 91168911 AAAATTTGTAAAATTTATAA 1 AAAAATTATAAAAATTA-AT * * * 91168931 AAAAAATATTAAAATTGAT 1 AAAAATTATAAAAATTAAT * 91168950 AAAACTTATAAAA 1 AAAAATTATAAAA 91168963 CGTACTAAAA Statistics Matches: 178, Mismatches: 39, Indels: 47 0.67 0.15 0.18 Matches are distributed among these distances: 16 7 0.04 17 16 0.09 18 36 0.20 19 51 0.29 20 48 0.27 21 17 0.10 22 3 0.02 ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32 Consensus pattern (19 bp): AAAAATTATAAAAATTAAT Found at i:91168935 original size:30 final size:30 Alignment explanation
Indices: 91168901--91168962 Score: 90 Period size: 30 Copynumber: 2.1 Consensus size: 30 91168891 TAAAATTCTT * 91168901 AAAAAATAATAAAATTTG-TAAAATTTATAA 1 AAAAAATAATAAAA-TTGATAAAACTTATAA * 91168931 AAAAAATATTAAAATTGATAAAACTTATAA 1 AAAAAATAATAAAATTGATAAAACTTATAA 91168961 AA 1 AA 91168963 CGTACTAAAA Statistics Matches: 29, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 29 3 0.10 30 26 0.90 ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31 Consensus pattern (30 bp): AAAAAATAATAAAATTGATAAAACTTATAA Found at i:91168953 original size:49 final size:47 Alignment explanation
Indices: 91168844--91168953 Score: 109 Period size: 49 Copynumber: 2.3 Consensus size: 47 91168834 ATAAATCATA * * 91168844 AAAATTATAAAAATTAATAAAAAATATTTAAATTATAAAAATAGAATT 1 AAAATTATAAAAAATAAT-AAAAATATTTAAATTATAAAAATAAAATT * 91168892 AAAATTCTTAAAAAATAAT-AAAAT-TTGTAAAATTTATAAAAA-AAATATT 1 AAAATT-ATAAAAAATAATAAAAATATT-T-AAA-TTATAAAAATAAA-ATT 91168941 AAAATTGATAAAA 1 AAAATT-ATAAAA 91168954 CTTATAAAAC Statistics Matches: 52, Mismatches: 5, Indels: 9 0.79 0.08 0.14 Matches are distributed among these distances: 46 2 0.04 47 6 0.12 48 11 0.21 49 33 0.63 ACGTcount: A:0.64, C:0.01, G:0.03, T:0.33 Consensus pattern (47 bp): AAAATTATAAAAAATAATAAAAATATTTAAATTATAAAAATAAAATT Found at i:91169518 original size:17 final size:18 Alignment explanation
Indices: 91169493--91169540 Score: 64 Period size: 17 Copynumber: 2.8 Consensus size: 18 91169483 GTTTATATTA * 91169493 ATTTCATATTTTTTA-AT 1 ATTTAATATTTTTTATAT 91169510 ATTTAATA-TTTTTATAT 1 ATTTAATATTTTTTATAT * 91169527 TTTTAATATTTTTT 1 ATTTAATATTTTTT 91169541 TTTTAATTTT Statistics Matches: 27, Mismatches: 2, Indels: 3 0.84 0.06 0.09 Matches are distributed among these distances: 16 6 0.22 17 16 0.59 18 5 0.19 ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69 Consensus pattern (18 bp): ATTTAATATTTTTTATAT Found at i:91169538 original size:9 final size:9 Alignment explanation
Indices: 91169502--91169539 Score: 55 Period size: 9 Copynumber: 4.6 Consensus size: 9 91169492 AATTTCATAT 91169502 TTTTTAATA 1 TTTTTAATA 91169511 --TTTAATA 1 TTTTTAATA 91169518 TTTTT-ATA 1 TTTTTAATA 91169526 TTTTTAATA 1 TTTTTAATA 91169535 TTTTT 1 TTTTT 91169540 TTTTTAATTT Statistics Matches: 26, Mismatches: 0, Indels: 6 0.81 0.00 0.19 Matches are distributed among these distances: 7 7 0.27 8 8 0.31 9 11 0.42 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (9 bp): TTTTTAATA Found at i:91169715 original size:46 final size:47 Alignment explanation
Indices: 91169665--91169762 Score: 189 Period size: 46 Copynumber: 2.1 Consensus size: 47 91169655 TTATATGAAC 91169665 TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATAT-AAA 1 TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATATAAAA 91169711 TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATATAAAA 1 TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATATAAAA 91169758 TTAAT 1 TTAAT 91169763 AAGGGTTTAA Statistics Matches: 51, Mismatches: 0, Indels: 1 0.98 0.00 0.02 Matches are distributed among these distances: 46 43 0.84 47 8 0.16 ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42 Consensus pattern (47 bp): TTAATTGAATATTTTAATTAATGGTAAAGGCTTGATTAGATATAAAA Found at i:91175538 original size:5 final size:5 Alignment explanation
Indices: 91175528--91175555 Score: 56 Period size: 5 Copynumber: 5.6 Consensus size: 5 91175518 TGATTGATTG 91175528 AAATT AAATT AAATT AAATT AAATT AAA 1 AAATT AAATT AAATT AAATT AAATT AAA 91175556 AAACTTGTTC Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 23 1.00 ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36 Consensus pattern (5 bp): AAATT Found at i:91178644 original size:20 final size:21 Alignment explanation
Indices: 91178610--91178663 Score: 67 Period size: 20 Copynumber: 2.6 Consensus size: 21 91178600 TGATGATATT * 91178610 TTATGATTA-TTTAATTAGATA 1 TTAT-ATTATTTTAATGAGATA 91178631 -TATATTATTTTAATGAGATA 1 TTATATTATTTTAATGAGATA * 91178651 TTTTATTATTTTA 1 TTATATTATTTTA 91178664 TTATTATTTC Statistics Matches: 29, Mismatches: 2, Indels: 4 0.83 0.06 0.11 Matches are distributed among these distances: 19 4 0.14 20 14 0.48 21 11 0.38 ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57 Consensus pattern (21 bp): TTATATTATTTTAATGAGATA Found at i:91178667 original size:3 final size:3 Alignment explanation
Indices: 91178649--91178697 Score: 52 Period size: 3 Copynumber: 17.3 Consensus size: 3 91178639 TTTAATGAGA * 91178649 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT 1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT 91178694 TAT T 1 TAT T 91178698 TAGTATAAAA Statistics Matches: 39, Mismatches: 2, Indels: 10 0.76 0.04 0.20 Matches are distributed among these distances: 2 7 0.18 3 29 0.74 4 3 0.08 ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69 Consensus pattern (3 bp): TAT Found at i:91178669 original size:11 final size:11 Alignment explanation
Indices: 91178653--91178691 Score: 69 Period size: 11 Copynumber: 3.5 Consensus size: 11 91178643 ATGAGATATT 91178653 TTATTATTTTA 1 TTATTATTTTA * 91178664 TTATTATTTCA 1 TTATTATTTTA 91178675 TTATTATTTTA 1 TTATTATTTTA 91178686 TTATTA 1 TTATTA 91178692 ATTATTTAGT Statistics Matches: 26, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 11 26 1.00 ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69 Consensus pattern (11 bp): TTATTATTTTA Found at i:91178677 original size:19 final size:19 Alignment explanation
Indices: 91178649--91178690 Score: 59 Period size: 19 Copynumber: 2.2 Consensus size: 19 91178639 TTTAATGAGA * 91178649 TATTTTATTATT-TTATTAT 1 TATTTCATTATTATT-TTAT 91178668 TATTTCATTATTATTTTAT 1 TATTTCATTATTATTTTAT 91178687 TATT 1 TATT 91178691 AATTATTTAG Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 19 19 0.90 20 2 0.10 ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71 Consensus pattern (19 bp): TATTTCATTATTATTTTAT Found at i:91180783 original size:54 final size:54 Alignment explanation
Indices: 91180713--91180848 Score: 263 Period size: 54 Copynumber: 2.5 Consensus size: 54 91180703 TTGTTGTTGC * 91180713 AGGGGATTTAGTCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA 1 AGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA 91180767 AGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA 1 AGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA 91180821 AGGGGATTTAGCCTGGACTGGTAATCCC 1 AGGGGATTTAGCCTGGACTGGTAATCCC 91180849 ACTGTAAGGA Statistics Matches: 81, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 54 81 1.00 ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29 Consensus pattern (54 bp): AGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATAAGCTTATATTAA Found at i:91180936 original size:46 final size:46 Alignment explanation
Indices: 91180883--91181068 Score: 266 Period size: 46 Copynumber: 4.0 Consensus size: 46 91180873 GTGTGCTTTT * * 91180883 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACC 1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA * * 91180929 TGATATGAAATGCGTAAGACCATGGTTGAAAGATACCATGGCAACG 1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA ** 91180975 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA 1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA * * * * 91181021 TGATA-GAAAGTGAGTAAGACCATAGTTGAAAGACACTATGGCATCA 1 TGATATGAAA-TGAGTAAGACCATGGTTGAAAGATACCATGGCAACA 91181067 TG 1 TG 91181069 TCAAAGATAA Statistics Matches: 128, Mismatches: 11, Indels: 2 0.91 0.08 0.01 Matches are distributed among these distances: 45 4 0.03 46 124 0.97 ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22 Consensus pattern (46 bp): TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA Found at i:91182307 original size:134 final size:134 Alignment explanation
Indices: 91182061--91182320 Score: 322 Period size: 134 Copynumber: 1.9 Consensus size: 134 91182051 TACAATCATT * * * 91182061 AAAAATTTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAGTGTATGTAGGT 1 AAAAAATTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAGGT * * * * 91182126 AAAAGCAAACGACCTAGTATAACATTCCAACAATCATTTAATGTCAAATTTATGTTGATAATATG 66 AAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAATATG 91182191 TATA 131 TATA * *** * * * 91182195 AAAAAATTCTTAGTCTAAATTTATTGTATTTTAGTTGGTCCATCAGTATCATAATATATGTTGGT 1 AAAAAATTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAGGT * * * * * * * * 91182260 AATAGCAAACAACTTAATATAACTTTTCACCGATCATTTAGTCTCAAATTAATGTTTATAA 66 AAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAA 91182321 AATATCTTCA Statistics Matches: 104, Mismatches: 22, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 134 104 1.00 ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38 Consensus pattern (134 bp): AAAAAATTCTTAGTCTAAATTCACAATATTTTAGTTGGTCCAACAATATCATAATATATGTAGGT AAAAGCAAACAACCTAATATAACATTCCAACAATCATTTAATCTCAAATTAATGTTGATAATATG TATA Found at i:91195854 original size:3 final size:3 Alignment explanation
Indices: 91195848--91195917 Score: 131 Period size: 3 Copynumber: 23.0 Consensus size: 3 91195838 TTATGTTTTC 91195848 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT TAT TAT 1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT 91195894 TAT TAT TAT TAT TAT TAT TAT TAT 1 TAT TAT TAT TAT TAT TAT TAT TAT 91195918 ATAATATATA Statistics Matches: 66, Mismatches: 0, Indels: 2 0.97 0.00 0.03 Matches are distributed among these distances: 3 63 0.95 4 3 0.05 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (3 bp): TAT Found at i:91197229 original size:7 final size:7 Alignment explanation
Indices: 91197217--91197249 Score: 57 Period size: 7 Copynumber: 4.7 Consensus size: 7 91197207 GTTAGAGTTT 91197217 ATATATA 1 ATATATA 91197224 ATATATA 1 ATATATA 91197231 ATATATA 1 ATATATA * 91197238 ATATAAA 1 ATATATA 91197245 ATATA 1 ATATA 91197250 AAAATAAATA Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 7 25 1.00 ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39 Consensus pattern (7 bp): ATATATA Found at i:91198797 original size:131 final size:132 Alignment explanation
Indices: 91198556--91199173 Score: 506 Period size: 132 Copynumber: 4.7 Consensus size: 132 91198546 TAGAAAATAC * * * * ** ** 91198556 GAGTGAAATTCTGAAAGAGATATTCGATTATTTTAAACAAATG-GGGATTGCAACCCAGCACGAT 1 GAGTGAAATTCCG-AAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGAT * 91198620 AGGGCACTG-TTCCTCGAATTGCCAAACATCGAACATT-TCTTCTGTTTTAAAGAG-TTTTTAGA 65 AGGGCAC-GATT-CTCGAATTGCCAAACATCGAACATTGCCTTC-GTTTTAAAGAGATTTTTAGA 91198682 AAACGT 127 AAACGT * * ** * * * 91198688 GAGTGGAATTCCGAAGGGATCTTCGATCGTTTTGAACAAATGAAAAAGCACAACCCAGCACGATA 1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATA * * * * * * 91198753 GGGCACGATTCTCGAATTGCCAAACATCGAACATCGCCTTTGTTTTGAAGGGTTTTCTTAAAAAA 66 GGGCACGATTCTCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAGATTT-TTAGAAAA * 91198818 CAT 130 CGT * * * * * 91198821 GAGTGAAA-ACCTAAAGGAACATTCGATTATTTTGAACAAACGAGAAATCACAACCCAACACGAT 1 GAGTGAAATTCC-GAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGAT * * * * * ** * * 91198885 AGGGCATGATTCCCGAATGGTCAAACACCGAGTATTGCCTTCGTTTTAAAG-GACTTTTAGAAGA 65 AGGGCACGATTCTCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAGATTTTTAGAAAA * 91198949 CCT 130 CGT ** * * * * * 91198952 GAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCGAACGAGAAATTACAACCCTA-CACGTT 1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCC-AGCACGAT * * * * * 91199016 AGTGCACGATTC-CGTGAATTGCTAAATATCAAACTTTGCCTTCGTTTTAAAGA-ATTTTTA-AA 65 AGGGCACGATTCTC--GAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAGATTTTTAGAA * 91199078 AGGCGT 128 A-ACGT ** ** 91199084 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGA-AAAC-ACGAAATTGCAACCCAGCAC-A 1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGA-ACAAACGA-GAAATCACAACCCAGCACGA * * 91199146 TTAGGGCACTATTCCGCGAATTGCCAAA 64 -TAGGGCACGATT-CTCGAATTGCCAAA 91199174 TATCAAATCT Statistics Matches: 387, Mismatches: 81, Indels: 36 0.77 0.16 0.07 Matches are distributed among these distances: 130 1 0.00 131 130 0.34 132 155 0.40 133 100 0.26 134 1 0.00 ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28 Consensus pattern (132 bp): GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATA GGGCACGATTCTCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGAGATTTTTAGAAAAC GT Found at i:91198875 original size:133 final size:131 Alignment explanation
Indices: 91198606--91198935 Score: 353 Period size: 133 Copynumber: 2.5 Consensus size: 131 91198596 ATGGGGATTG ** 91198606 CAACCCAGCACGATAGGGCACTG-TTCCTCGAATTGCCAAACATCGAACATTTCTTCTGTTTTAA 1 CAACCCAGCACGATAGGGCAC-GATT-CTCGAATTGCCAAACATCGAACATGCCTTCTGTTTTAA * * ** * * * * 91198670 AGAGTTTTTAGAAAACGTGAGTGGAATTCCGAAGGGATCTTCGATCGTTTTGAACAAATGAAAAA 64 AGAGTTTTTAAAAAACATGAGTGGAAAACCGAAAGGAACTTCGATCATTTTGAACAAACGAAAAA 91198735 GCA 129 GCA * 91198738 CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACATCGCCTT-TGTTTTGAA 1 CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACAT-GCCTTCTGTTTTAAA * * * * 91198802 GGGTTTTCTTAAAAAACATGAGT-GAAAACCTAAAGGAACATTCGATTATTTTGAACAAACGAGA 65 GAG-TTT-TTAAAAAACATGAGTGGAAAACCGAAAGGAAC-TTCGATCATTTTGAACAAACGAAA * 91198866 AATCA 127 AAGCA * * * * * * ** 91198871 CAACCCAACACGATAGGGCATGATTCCCGAATGGTCAAACACCGAGTATTGCCTTC-GTTTTAAA 1 CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACA-TGCCTTCTGTTTTAAA 91198935 G 65 G 91198936 GACTTTTAGA Statistics Matches: 166, Mismatches: 25, Indels: 13 0.81 0.12 0.06 Matches are distributed among these distances: 131 35 0.21 132 40 0.24 133 90 0.54 134 1 0.01 ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25 Consensus pattern (131 bp): CAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACATGCCTTCTGTTTTAAAG AGTTTTTAAAAAACATGAGTGGAAAACCGAAAGGAACTTCGATCATTTTGAACAAACGAAAAAGC A Found at i:91202604 original size:132 final size:132 Alignment explanation
Indices: 91202028--91202603 Score: 852 Period size: 132 Copynumber: 4.4 Consensus size: 132 91202018 AGGATTATGA * ** 91202028 CTTCGATCTGCTTCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACA 1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAAT-TTCAGCCTACTCCACTACA * * * 91202093 TCTTTAGGGAGTTAGGTTGGTGG-TGTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCG 65 ACTTTAGGGAGCTAGGTTGGTGGCT-TAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCA 91202157 CCGT 129 CCGT * * * 91202161 CTTCGATATAC-TCTACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCTACTACA 1 CTTCGATCTGCTTC-ACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACA * * 91202225 ACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTTCTTCACTGCAACTTCAGGAAGCCAAGATTCAT 65 ACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCAC 91202290 CGAT 130 CG-T * * 91202294 -TTCGATTTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCATTACAA 1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA * * * 91202358 CTTTAAGGAGCTATGTTGGTGGCTTAAATCTGCTTCACTGCAATTTCAGGAAGCCAAGATTCACC 66 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC 91202423 GT 131 GT * * * * * 91202425 CTTCGATCTGCTTCACTACAACTCCAGGGAAGCAGGATCTAAAATTTTAGCCTACTCCACTACAA 1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA * * 91202490 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAAGAAGCTAAGATTCACC 66 CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC 91202555 GT 131 GT * * * * 91202557 CTTCGGTCTGCTTCAGTGCAACTTCAGGGAAACAGGATCTGAAATTT 1 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTT 91202604 TGCCAATGTC Statistics Matches: 400, Mismatches: 38, Indels: 11 0.89 0.08 0.02 Matches are distributed among these distances: 131 1 0.00 132 358 0.89 133 41 0.10 ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29 Consensus pattern (132 bp): CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAA CTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCACC GT Found at i:91213788 original size:26 final size:26 Alignment explanation
Indices: 91213759--91213811 Score: 63 Period size: 26 Copynumber: 2.0 Consensus size: 26 91213749 TCAAACATGC * 91213759 ATTTAGGTCAATTTAAC-CCTAGGGGT 1 ATTTAGAT-AATTTAACTCCTAGGGGT * * 91213785 ATTTCGATAATTTATCTCCTAGGGGT 1 ATTTAGATAATTTAACTCCTAGGGGT 91213811 A 1 A 91213812 AAACTATAAA Statistics Matches: 23, Mismatches: 3, Indels: 2 0.82 0.11 0.07 Matches are distributed among these distances: 25 7 0.30 26 16 0.70 ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38 Consensus pattern (26 bp): ATTTAGATAATTTAACTCCTAGGGGT Found at i:91215311 original size:26 final size:26 Alignment explanation
Indices: 91215280--91215386 Score: 180 Period size: 26 Copynumber: 4.2 Consensus size: 26 91215270 TGAAATTCCC * 91215280 ATCATGGAACATTTACCTAAACCATT 1 ATCATGGAACATTTACCTAACCCATT 91215306 ATCATGGAACATTTACCTAACCCATT 1 ATCATGGAACATTTACCTAACCCATT * * 91215332 ATCATGGAATATTTACCTAATCCATT 1 ATCATGGAACATTTACCTAACCCATT 91215358 -TCATGGAACATTTACCTAACCCATT 1 ATCATGGAACATTTACCTAACCCATT 91215383 ATCA 1 ATCA 91215387 ATTTGTATCA Statistics Matches: 75, Mismatches: 5, Indels: 2 0.91 0.06 0.02 Matches are distributed among these distances: 25 23 0.31 26 52 0.69 ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33 Consensus pattern (26 bp): ATCATGGAACATTTACCTAACCCATT Found at i:91215381 original size:51 final size:52 Alignment explanation
Indices: 91215280--91215386 Score: 189 Period size: 51 Copynumber: 2.1 Consensus size: 52 91215270 TGAAATTCCC 91215280 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT 1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT * * 91215332 ATCATGGAATATTTACCTAATCCATT-TCATGGAACATTTACCTAACCCATT 1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT 91215383 ATCA 1 ATCA 91215387 ATTTGTATCA Statistics Matches: 53, Mismatches: 2, Indels: 1 0.95 0.04 0.02 Matches are distributed among these distances: 51 29 0.55 52 24 0.45 ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33 Consensus pattern (52 bp): ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT Found at i:91217432 original size:131 final size:133 Alignment explanation
Indices: 91217240--91217536 Score: 318 Period size: 133 Copynumber: 2.2 Consensus size: 133 91217230 ATGGGGATTG * ** 91217240 CAACCCAGCACGATAGGGTACT-ATTCCTCGAATTGCCAAACATCGAACATTTCTTCAGTTTTAA 1 CAACCCAGCACGATAGGGCA-TGATT-CTCGAATTGCCAAACATCGAACATGCCTTCAGTTTTAA * * * ** * * * * 91217304 AGAG-TTT-TTAGAAAACGTGAGTGGAATTCCG-AAGAGATC-TTCGATCGTTTTGAACAAATGA 64 AGAGTTTTCTTAAAAAACATAAGT-GAAAACCGAAAG-GAACATTCGATCATTTTGAAAAAACGA 91217365 AAAAGCA 127 AAAAGCA * * * 91217372 CAACCCAGCACGATAGGGGATGATTCTCGAATTGCCAAACATCGAACATCGCCTT-TGTTTTGAA 1 CAACCCAGCACGATAGGGCATGATTCTCGAATTGCCAAACATCGAACAT-GCCTTCAGTTTTAAA * * * * 91217436 GGGTTTTCTTAAAAAACATAAGTGAAAACCTAAAGGAACATTCGATTATTTTGAAAAAACGAGAA 65 GAGTTTTCTTAAAAAACATAAGTGAAAACCGAAAGGAACATTCGATCATTTTGAAAAAACGAAAA * 91217501 ATCA 130 AGCA * 91217505 CAACCCAACACGATAGGGCATGATTCTCGAAT 1 CAACCCAGCACGATAGGGCATGATTCTCGAAT 91217537 GGTCGAACAC Statistics Matches: 138, Mismatches: 21, Indels: 11 0.81 0.12 0.06 Matches are distributed among these distances: 131 34 0.25 132 36 0.26 133 68 0.49 ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26 Consensus pattern (133 bp): CAACCCAGCACGATAGGGCATGATTCTCGAATTGCCAAACATCGAACATGCCTTCAGTTTTAAAG AGTTTTCTTAAAAAACATAAGTGAAAACCGAAAGGAACATTCGATCATTTTGAAAAAACGAAAAA GCA Found at i:91217644 original size:131 final size:132 Alignment explanation
Indices: 91217475--91217800 Score: 315 Period size: 132 Copynumber: 2.5 Consensus size: 132 91217465 CTAAAGGAAC * * * 91217475 ATTCGATTATTTTGAAAAAACGAGAAATCACAACCCAACACGATAGGGCATGATT-CTCGAATGG 1 ATTCGATTATTTTGAGAAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG * ** * * * * 91217539 -TCGAACA-CCGAGTATTGCCTTCGTTTTAAAGGACTTTTAGAAGATC-TGAGTGAAATTTCGAA 66 CT-AAACATCAAACT-TTGCCTTCGTTTTAAAGAACTTTTAAAAG-GCGTGAGTGAAATTTCGAA 91217601 GGGAT 128 GGGAT * ** * * * * 91217606 ATTTGATTATTTTGAGTGAACGAGAAATTACAACCCAACACGTTAGTGCACGATTCCGCGAATTG 1 ATTCGATTATTTTGAGAAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG * * * * 91217671 CTAAATATCAAACTTTTCCTTCGTTTTAAAGAATTTTTAAAAGGCGTGAGTGAAATTTTGAAGGG 66 CTAAACATCAAACTTTGCCTTCGTTTTAAAGAACTTTTAAAAGGCGTGAGTGAAATTTCGAAGGG 91217736 AT 131 AT ** * * * 91217738 ATTCGATTATTTTGAGCAAACAC-A-AAATTGCAACCCAGCAC-ATTAGGGCACTATTTCGCGAA 1 ATTCGATTATTTTGAG-AAA-ACGAGAAATCACAACCCAACACGA-TAGGGCACGATTCCGCGAA 91217800 T 63 T 91217801 TGCCAAATAT Statistics Matches: 158, Mismatches: 30, Indels: 13 0.79 0.15 0.06 Matches are distributed among these distances: 131 48 0.30 132 102 0.65 133 6 0.04 134 2 0.01 ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30 Consensus pattern (132 bp): ATTCGATTATTTTGAGAAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATGG CTAAACATCAAACTTTGCCTTCGTTTTAAAGAACTTTTAAAAGGCGTGAGTGAAATTTCGAAGGG AT Found at i:91217734 original size:132 final size:133 Alignment explanation
Indices: 91217556--91217843 Score: 350 Period size: 132 Copynumber: 2.2 Consensus size: 133 91217546 CCGAGTATTG * * * * * 91217556 CCTTCGTTTTAAAGGACTTTTAGAAGATCTGAGTGAAATTTCGAAGGGATATTTGATTATTTTGA 1 CCTTCGTTTTAAAGAATTTTTAAAAGAGCTGAGTGAAATTTCGAAGGGATATTCGATTATTTTGA ** * * * * * 91217621 GTGAACGA-GAAATTACAACCCAACACGTTAGTGCACGATTCCGCGAATTGCTAAATATCAAA-C 66 GCAAAC-ACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATAAAATC ** 91217684 TTTT 130 TCAT * 91217688 CCTTCGTTTTAAAGAATTTTTAAAAG-GCGTGAGTGAAATTTTGAAGGGATATTCGATTATTTTG 1 CCTTCGTTTTAAAGAATTTTTAAAAGAGC-TGAGTGAAATTTCGAAGGGATATTCGATTATTTTG * * * * 91217752 AGCAAACACAAAATTGCAACCCAGCACATTAGGGCACTATTTCGCGAATTGCCAAATATAAAATC 65 AGCAAACACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATAAAATC 91217817 TCAT 130 TCAT * 91217821 -CTTCGTCTTAAAGAATTTTTAAA 1 CCTTCGTTTTAAAGAATTTTTAAA 91217844 TGGATACTTA Statistics Matches: 133, Mismatches: 20, Indels: 6 0.84 0.13 0.04 Matches are distributed among these distances: 131 2 0.02 132 128 0.96 133 3 0.02 ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33 Consensus pattern (133 bp): CCTTCGTTTTAAAGAATTTTTAAAAGAGCTGAGTGAAATTTCGAAGGGATATTCGATTATTTTGA GCAAACACAAAATTACAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATAAAATCT CAT Found at i:91218518 original size:14 final size:14 Alignment explanation
Indices: 91218499--91218527 Score: 58 Period size: 14 Copynumber: 2.1 Consensus size: 14 91218489 TGGTTCTACA 91218499 AATTATACGTGTAT 1 AATTATACGTGTAT 91218513 AATTATACGTGTAT 1 AATTATACGTGTAT 91218527 A 1 A 91218528 TATATATATA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41 Consensus pattern (14 bp): AATTATACGTGTAT Found at i:91218987 original size:2 final size:2 Alignment explanation
Indices: 91218980--91219010 Score: 62 Period size: 2 Copynumber: 15.5 Consensus size: 2 91218970 TATTATAAAG 91218980 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 91219011 GATAATGCGT Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 29 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:91225230 original size:15 final size:14 Alignment explanation
Indices: 91225210--91225239 Score: 51 Period size: 14 Copynumber: 2.1 Consensus size: 14 91225200 TTTTTAAAAA 91225210 AAAAAAATTAATTTT 1 AAAAAAA-TAATTTT 91225225 AAAAAAATAATTTT 1 AAAAAAATAATTTT 91225239 A 1 A 91225240 TCGATGAATA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 14 8 0.53 15 7 0.47 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (14 bp): AAAAAAATAATTTT Found at i:91226788 original size:10 final size:10 Alignment explanation
Indices: 91226757--91226818 Score: 56 Period size: 9 Copynumber: 6.1 Consensus size: 10 91226747 ATACCTTAAC 91226757 AAAACCCTAA 1 AAAACCCTAA * * * 91226767 AATA-CATTA 1 AAAACCCTAA 91226776 AAAACCCT-A 1 AAAACCCTAA 91226785 AAAACCCTAA 1 AAAACCCTAA 91226795 AAAACCCCTTAA 1 AAAA-CCC-TAA 91226807 AAAACCCCTAA 1 AAAA-CCCTAA 91226818 A 1 A 91226819 CCTGGCTGAA Statistics Matches: 43, Mismatches: 5, Indels: 7 0.78 0.09 0.13 Matches are distributed among these distances: 9 15 0.35 10 10 0.23 11 7 0.16 12 11 0.26 ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15 Consensus pattern (10 bp): AAAACCCTAA Found at i:91226797 original size:19 final size:19 Alignment explanation
Indices: 91226757--91226801 Score: 56 Period size: 19 Copynumber: 2.4 Consensus size: 19 91226747 ATACCTTAAC * 91226757 AAAACCCTAAAATACATTA 1 AAAACCCTAAAATACATAA * 91226776 AAAACCCTAAAA-ACCCTAA 1 AAAACCCTAAAATA-CATAA 91226795 AAAACCC 1 AAAACCC 91226802 CTTAAAAAAC Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 18 1 0.04 19 22 0.96 ACGTcount: A:0.58, C:0.29, G:0.00, T:0.13 Consensus pattern (19 bp): AAAACCCTAAAATACATAA Found at i:91226809 original size:12 final size:12 Alignment explanation
Indices: 91226784--91226815 Score: 50 Period size: 12 Copynumber: 2.8 Consensus size: 12 91226774 TAAAAACCCT 91226784 AAAAA-CCC-TA 1 AAAAACCCCTTA 91226794 AAAAACCCCTTA 1 AAAAACCCCTTA 91226806 AAAAACCCCT 1 AAAAACCCCT 91226816 AAACCTGGCT Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 10 5 0.25 11 3 0.15 12 12 0.60 ACGTcount: A:0.53, C:0.34, G:0.00, T:0.12 Consensus pattern (12 bp): AAAAACCCCTTA Found at i:91227799 original size:20 final size:20 Alignment explanation
Indices: 91227758--91227800 Score: 54 Period size: 20 Copynumber: 2.1 Consensus size: 20 91227748 TAATATTTCA 91227758 AATATAAAAAACTAAAATAT 1 AATATAAAAAACTAAAATAT 91227778 AATATGAAATAAA-TAAAA-AT 1 AATAT-AAA-AAACTAAAATAT 91227798 AAT 1 AAT 91227801 TATTTTTTAA Statistics Matches: 21, Mismatches: 0, Indels: 4 0.84 0.00 0.16 Matches are distributed among these distances: 20 10 0.48 21 8 0.38 22 3 0.14 ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26 Consensus pattern (20 bp): AATATAAAAAACTAAAATAT Found at i:91228199 original size:10 final size:11 Alignment explanation
Indices: 91228184--91228208 Score: 50 Period size: 11 Copynumber: 2.3 Consensus size: 11 91228174 TAACCTTAAC 91228184 AAAAAAAAAGA 1 AAAAAAAAAGA 91228195 AAAAAAAAAGA 1 AAAAAAAAAGA 91228206 AAA 1 AAA 91228209 GATCTACAAT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00 Consensus pattern (11 bp): AAAAAAAAAGA Found at i:91229552 original size:23 final size:25 Alignment explanation
Indices: 91229493--91229552 Score: 63 Period size: 26 Copynumber: 2.4 Consensus size: 25 91229483 CTAACCTTTT * 91229493 AAAAAATA-TTTTATTTTTTTCTTTC 1 AAAAAA-AGTTTTATTTTTTTCTATC 91229518 ATAAAGAAAGTTTTA-TTTTTT-TATC 1 A-AAA-AAAGTTTTATTTTTTTCTATC 91229543 AAAAAAAGTT 1 AAAAAAAGTT 91229553 AATTTTATTT Statistics Matches: 31, Mismatches: 1, Indels: 8 0.77 0.03 0.20 Matches are distributed among these distances: 23 6 0.19 24 3 0.10 25 5 0.16 26 10 0.32 27 7 0.23 ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50 Consensus pattern (25 bp): AAAAAAAGTTTTATTTTTTTCTATC Found at i:91233726 original size:20 final size:20 Alignment explanation
Indices: 91233701--91233742 Score: 84 Period size: 20 Copynumber: 2.1 Consensus size: 20 91233691 TTCTGATGTG 91233701 AAAGTAAAAAGAATTAATAT 1 AAAGTAAAAAGAATTAATAT 91233721 AAAGTAAAAAGAATTAATAT 1 AAAGTAAAAAGAATTAATAT 91233741 AA 1 AA 91233743 GCCCATTGAA Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 20 22 1.00 ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24 Consensus pattern (20 bp): AAAGTAAAAAGAATTAATAT Found at i:91243368 original size:19 final size:19 Alignment explanation
Indices: 91243344--91243381 Score: 76 Period size: 19 Copynumber: 2.0 Consensus size: 19 91243334 TGACTATGAA 91243344 ATGTATGCGATGAAATTAT 1 ATGTATGCGATGAAATTAT 91243363 ATGTATGCGATGAAATTAT 1 ATGTATGCGATGAAATTAT 91243382 CCCTAGGTTA Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 19 1.00 ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37 Consensus pattern (19 bp): ATGTATGCGATGAAATTAT Found at i:91244260 original size:22 final size:22 Alignment explanation
Indices: 91244227--91244279 Score: 54 Period size: 22 Copynumber: 2.4 Consensus size: 22 91244217 TCAAATGATA * 91244227 TTTT-CTTAAATTTAAATATTAT 1 TTTTCCTT-AATTTAAATATTAG ** * 91244249 TTTTCCTTAATTTTTATTTTAG 1 TTTTCCTTAATTTAAATATTAG 91244271 TTTTCCTTA 1 TTTTCCTTA 91244280 TGTTCGTTTA Statistics Matches: 26, Mismatches: 4, Indels: 2 0.81 0.12 0.06 Matches are distributed among these distances: 22 23 0.88 23 3 0.12 ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64 Consensus pattern (22 bp): TTTTCCTTAATTTAAATATTAG Found at i:91248340 original size:78 final size:78 Alignment explanation
Indices: 91248050--91248356 Score: 324 Period size: 78 Copynumber: 4.0 Consensus size: 78 91248040 AGAATTATGG * * ** * * * * 91248050 AAATCGAACAAATCCTGTTGAACGACAAGAATAAAAATCCTG-AACAGAATTGTTTAATT-AGTT 1 AAATCAAACAAATCCTGTTAAACGGTAGGAAT-AAAATCCTGAAACAGAAGTGTTCAATTGAGTA * 91248113 TTCTGTTT-AAAGTA 65 TTCTGTTTGAAA-CA * * * 91248127 AGAATCAAACAAATCCTGTTAAACGATAGGAATAAAATCCAGAAACAGGAGTGTTCAATTGAGT- 1 A-AATCAAACAAATCCTGTTAAACGGTAGGAATAAAATCCTGAAACAGAAGTGTTCAATTGAGTA 91248191 TTCTGTTTGAAA-A 65 TTCTGTTTGAAACA * * * * 91248204 AAA-CAAAAAAATCCGGTTAAACGGCAGGAATAAAATCCTGAAATAGAAGTGTTCAATTGA-TAT 1 AAATCAAACAAATCCTGTTAAACGGTAGGAATAAAATCCTGAAACAGAAGTGTTCAATTGAGTAT 91248267 TCTGTTTGAAACA 66 TCTGTTTGAAACA * * * * * 91248280 GAAATCAAACAAGTCCTGTTAAATGGTAGGAATAAAATCCTGAAACAGGATTGTTCAATTGAAT- 1 -AAATCAAACAAATCCTGTTAAACGGTAGGAATAAAATCCTGAAACAGAAGTGTTCAATTGAGTA * 91248344 TTCTATTTGAAAC 65 TTCTGTTTGAAAC 91248357 GGAATATAAT Statistics Matches: 197, Mismatches: 24, Indels: 17 0.83 0.10 0.07 Matches are distributed among these distances: 74 1 0.01 75 62 0.31 76 3 0.02 77 14 0.07 78 110 0.56 79 7 0.04 ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28 Consensus pattern (78 bp): AAATCAAACAAATCCTGTTAAACGGTAGGAATAAAATCCTGAAACAGAAGTGTTCAATTGAGTAT TCTGTTTGAAACA Found at i:91252877 original size:40 final size:40 Alignment explanation
Indices: 91252803--91252987 Score: 250 Period size: 40 Copynumber: 4.6 Consensus size: 40 91252793 AACTCAAGTA * * * 91252803 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACACATG 1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG * 91252842 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG * * 91252882 CCTTCTGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG 91252925 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG 91252965 CCTTCGGGACTTAGCCCGGATAT 1 CCTTCGGGACTTAGCCCGGATAT 91252988 CATCCGAATA Statistics Matches: 130, Mismatches: 9, Indels: 13 0.86 0.06 0.09 Matches are distributed among these distances: 39 13 0.10 40 79 0.61 41 1 0.01 43 36 0.28 44 1 0.01 ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG Found at i:91252926 original size:83 final size:83 Alignment explanation
Indices: 91252803--91252983 Score: 289 Period size: 83 Copynumber: 2.2 Consensus size: 83 91252793 AACTCAAGTA * * * * 91252803 CCTTCGGGATTTAG-CCGGATATAGC-A--ACTCGCACACATGCCTTCGGGTCTTAGCCCGGATA 1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA 91252864 TAGTCACTAGCACAAATG 66 TAGTCACTAGCACAAATG * 91252882 CCTTCTGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA 1 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA 91252947 TAGTCACTAGCACAAATG 66 TAGTCACTAGCACAAATG 91252965 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 91252984 ATATCATCCG Statistics Matches: 92, Mismatches: 6, Indels: 4 0.90 0.06 0.04 Matches are distributed among these distances: 79 12 0.13 80 10 0.11 81 1 0.01 83 69 0.75 ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23 Consensus pattern (83 bp): CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA TAGTCACTAGCACAAATG Found at i:91255545 original size:62 final size:62 Alignment explanation
Indices: 91255461--91255718 Score: 293 Period size: 62 Copynumber: 4.2 Consensus size: 62 91255451 TGAACGGTCG * * * * 91255461 TGTAACTCACTGTTCATTGTATAAAACCACATGGCCAGGGATACGGGCGCGTGCCCAGGCCA 1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA * * * * * * * 91255523 TGTAGCTCACTGTTCATAGTATAAAACCACATGGCTAGAGACACAGGCGTGTGCCCAGGTCG 1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA * * * * * * * 91255585 TGCAACTCATTGTT-ATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCTAGGTCG 1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA * * * * * 91255646 TGTAACTCACTGTTCATAGTATAAAACCATACGGTCAGGGACAGGGGTGTGTGCCCAGGCTA 1 TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA * 91255708 TGTGACTCACT 1 TGTAACTCACT 91255719 ATTTGTACTT Statistics Matches: 163, Mismatches: 32, Indels: 2 0.83 0.16 0.01 Matches are distributed among these distances: 61 52 0.32 62 111 0.68 ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23 Consensus pattern (62 bp): TGTAACTCACTGTTCATAGTATAAAACCACACGGCCAGGGACACGGGCGTGTGCCCAGGCCA Found at i:91255704 original size:123 final size:124 Alignment explanation
Indices: 91255456--91255679 Score: 315 Period size: 123 Copynumber: 1.8 Consensus size: 124 91255446 CTGTGTGAAC * * * * * * 91255456 GGTCGTGTAACTCACTGTTCATTGTATAAAACCACATGGCCAGGGATACGGGCGCGTGCCCAGGC 1 GGTCGTGCAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCACGTGCCCAGGC * * 91255521 CATGTAGCTCACTGTTCATAGTATAAAACCACATGGCTAGAGACACAGGCGTGTGCCCA 66 CATGTAACTCACTGTTCATAGTATAAAACCACACGGCTAGAGACACAGGCGTGTGCCCA * * * * 91255580 GGTCGTGCAACTCATTGTT-ATAGTATAAAACCACACGGCCAAGGACACGGGCATGTGCCTAGGT 1 GGTCGTGCAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCACGTGCCCAGGC * * 91255644 CGTGTAACTCACTGTTCATAGTATAAAACCATACGG 66 CATGTAACTCACTGTTCATAGTATAAAACCACACGG 91255680 TCAGGGACAG Statistics Matches: 86, Mismatches: 14, Indels: 1 0.85 0.14 0.01 Matches are distributed among these distances: 123 69 0.80 124 17 0.20 ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23 Consensus pattern (124 bp): GGTCGTGCAACTCACTGTTCATAGTATAAAACCACACGGCCAAGGACACGGGCACGTGCCCAGGC CATGTAACTCACTGTTCATAGTATAAAACCACACGGCTAGAGACACAGGCGTGTGCCCA Found at i:91258873 original size:5 final size:5 Alignment explanation
Indices: 91258865--91258895 Score: 62 Period size: 5 Copynumber: 6.2 Consensus size: 5 91258855 GATACATTAC 91258865 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT A 1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT A 91258896 CTGTGCCTAT Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 26 1.00 ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39 Consensus pattern (5 bp): ATGAT Found at i:91260440 original size:8 final size:7 Alignment explanation
Indices: 91260413--91260438 Score: 52 Period size: 7 Copynumber: 3.7 Consensus size: 7 91260403 TTTGGTTCTT 91260413 TTTTTAA 1 TTTTTAA 91260420 TTTTTAA 1 TTTTTAA 91260427 TTTTTAA 1 TTTTTAA 91260434 TTTTT 1 TTTTT 91260439 TATTACACCC Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 19 1.00 ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77 Consensus pattern (7 bp): TTTTTAA Found at i:91262424 original size:93 final size:93 Alignment explanation
Indices: 91262287--91262499 Score: 293 Period size: 93 Copynumber: 2.3 Consensus size: 93 91262277 AATTTTTTTC * * * * 91262287 AAAATAAGCAATTAAGTCCCTAAC-TTTTTTTTGCACTCATTTGGGTGCTTGAACTTTCAAAATG 1 AAAAAAAGCAATTAAGCCCCT-ACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATG * *** 91262351 CATTAAAAAGGTCCTCAAACCTTTTCAAA 65 CATCAAAAAAACCCTCAAACCTTTTCAAA * * 91262380 AAAAAAAGCAATTAAGCCCCTACTTTTTTTTTGCACTTAATTGGGTACTTGAACTTTCAAAATGT 1 AAAAAAAGCAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGC * 91262445 ATCAAAAAAACCCTCAAACTTTTTCAAA 66 ATCAAAAAAACCCTCAAACCTTTTCAAA * * 91262473 AAAAAAAACAATTAAGCCCCTGCTTTT 1 AAAAAAAGCAATTAAGCCCCTACTTTT 91262500 ATTAAAAAAT Statistics Matches: 106, Mismatches: 13, Indels: 2 0.88 0.11 0.02 Matches are distributed among these distances: 92 2 0.02 93 104 0.98 ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33 Consensus pattern (93 bp): AAAAAAAGCAATTAAGCCCCTACTTTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGC ATCAAAAAAACCCTCAAACCTTTTCAAA Found at i:91262629 original size:11 final size:11 Alignment explanation
Indices: 91262576--91262698 Score: 54 Period size: 10 Copynumber: 12.1 Consensus size: 11 91262566 TAAAAAATTC 91262576 AAATAT-TAAA 1 AAATATATAAA * 91262586 AAAT-TATTAA 1 AAATATATAAA * 91262596 AAAT-TAGAAAA 1 AAATATA-TAAA * * 91262607 AAAAATCTTAAA 1 AAATAT-ATAAA 91262619 AAATATATAAA 1 AAATATATAAA * 91262630 AAA-GTAT-AA 1 AAATATATAAA * * 91262639 AATTTTAT-AA 1 AAATATATAAA * 91262649 AAATA-GTAAA 1 AAATATATAAA * 91262659 AAAT-T-TATA 1 AAATATATAAA * 91262668 AAATATAT-AG 1 AAATATATAAA 91262678 AAATATAT-AA 1 AAATATATAAA 91262688 AAAT-TATAAA 1 AAATATATAAA 91262698 A 1 A 91262699 TTTTATAAAG Statistics Matches: 85, Mismatches: 18, Indels: 20 0.69 0.15 0.16 Matches are distributed among these distances: 9 16 0.19 10 47 0.55 11 13 0.15 12 9 0.11 ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30 Consensus pattern (11 bp): AAATATATAAA Found at i:91262641 original size:29 final size:29 Alignment explanation
Indices: 91262608--91262707 Score: 107 Period size: 29 Copynumber: 3.4 Consensus size: 29 91262598 ATTAGAAAAA * 91262608 AAAATCTTA-AAAAATATATAAAAAAGTAT 1 AAAAT-TTATAAAAATATATAAAAAATTAT * 91262637 AAAATTTTATAAAAATAGTA-AAAAATTTAT 1 AAAA-TTTATAAAAATA-TATAAAAAATTAT * * 91262667 AAAATATATAGAAATATAT-AAAAATTAT 1 AAAATTTATAAAAATATATAAAAAATTAT 91262695 AAAATTTTATAAA 1 AAAA-TTTATAAA 91262708 GTTGTAAGAA Statistics Matches: 59, Mismatches: 7, Indels: 10 0.78 0.09 0.13 Matches are distributed among these distances: 28 14 0.24 29 23 0.39 30 20 0.34 31 2 0.03 ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33 Consensus pattern (29 bp): AAAATTTATAAAAATATATAAAAAATTAT Found at i:91262705 original size:19 final size:19 Alignment explanation
Indices: 91262628--91262707 Score: 76 Period size: 19 Copynumber: 4.2 Consensus size: 19 91262618 AAAATATATA * 91262628 AAAAAGTATAAAATTTTAT 1 AAAAATTATAAAATTTTAT * 91262647 AAAAA-TAGTAAAAAATTTAT 1 AAAAATTA-T-AAAATTTTAT * 91262667 -AAAATATATAGAAA-TATAT 1 AAAAAT-TATA-AAATTTTAT 91262686 AAAAATTATAAAATTTTAT 1 AAAAATTATAAAATTTTAT 91262705 AAA 1 AAA 91262708 GTTGTAAGAA Statistics Matches: 51, Mismatches: 3, Indels: 14 0.75 0.04 0.21 Matches are distributed among these distances: 18 5 0.10 19 26 0.51 20 18 0.35 21 2 0.04 ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34 Consensus pattern (19 bp): AAAAATTATAAAATTTTAT Found at i:91262705 original size:21 final size:20 Alignment explanation
Indices: 91262624--91262707 Score: 86 Period size: 20 Copynumber: 4.3 Consensus size: 20 91262614 TTAAAAAATA 91262624 TATAAAAAAGTATAAAATTT 1 TATAAAAAAGTATAAAATTT * 91262644 TATAAAAATAGTA-AAAAATT 1 TATAAAAA-AGTATAAAATTT * * 91262664 TATAAAATA-TATAGAAA-TA 1 TATAAAAAAGTATA-AAATTT * 91262683 TAT-AAAAATTATAAAATTT 1 TATAAAAAAGTATAAAATTT 91262702 TATAAA 1 TATAAA 91262708 GTTGTAAGAA Statistics Matches: 53, Mismatches: 5, Indels: 12 0.76 0.07 0.17 Matches are distributed among these distances: 18 9 0.17 19 14 0.26 20 26 0.49 21 4 0.08 ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35 Consensus pattern (20 bp): TATAAAAAAGTATAAAATTT Found at i:91262737 original size:21 final size:21 Alignment explanation
Indices: 91262637--91262739 Score: 60 Period size: 21 Copynumber: 5.1 Consensus size: 21 91262627 AAAAAAGTAT * * 91262637 AAAATTTTATAAAAATAGTAA- 1 AAAATTATATAAAGAT-GTAAG * 91262658 AAAATT-TATAAA-ATATATAG 1 AAAATTATATAAAGATGTA-AG * * 91262678 -AAA-TATATAAAAAT-T-AT 1 AAAATTATATAAAGATGTAAG * * 91262695 AAAATTTTATAAAGTTGTAAG 1 AAAATTATATAAAGATGTAAG 91262716 AAAATTATATAAA-ATGTAAAG 1 AAAATTATATAAAGATGT-AAG 91262737 AAA 1 AAA 91262740 TATAAATTTC Statistics Matches: 65, Mismatches: 8, Indels: 18 0.71 0.09 0.20 Matches are distributed among these distances: 17 1 0.02 18 6 0.09 19 21 0.32 20 12 0.18 21 25 0.38 ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33 Consensus pattern (21 bp): AAAATTATATAAAGATGTAAG Found at i:91262743 original size:19 final size:19 Alignment explanation
Indices: 91262644--91262743 Score: 57 Period size: 19 Copynumber: 5.2 Consensus size: 19 91262634 TATAAAATTT 91262644 TATA-AAAATAGTAAA-AAA 1 TATATAAAAT-GTAAAGAAA * * * 91262662 TTTATAAAATATATAGAAA 1 TATATAAAATGTAAAGAAA * 91262681 TATATAAAAAT-TATAA-AAT 1 TATAT-AAAATGTA-AAGAAA * * 91262700 TTTATAAAGTTGT-AAGAAAA 1 TATATAAA-ATGTAAAG-AAA 91262720 TTATATAAAATGTAAAGAAA 1 -TATATAAAATGTAAAGAAA 91262740 TATA 1 TATA 91262744 AATTTCATAA Statistics Matches: 61, Mismatches: 11, Indels: 19 0.67 0.12 0.21 Matches are distributed among these distances: 18 11 0.18 19 25 0.41 20 15 0.25 21 10 0.16 ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33 Consensus pattern (19 bp): TATATAAAATGTAAAGAAA Found at i:91262764 original size:57 final size:57 Alignment explanation
Indices: 91262615--91262743 Score: 170 Period size: 58 Copynumber: 2.2 Consensus size: 57 91262605 AAAAAAATCT * 91262615 TAAA-AAATATATAAAAAAGTATAAAATTTTATAAAAATAGTAAAAAATTTATAAAATA 1 TAAAGAAATATAT-AAAAATTATAAAATTTTAT-AAAATAGTAAAAAATTTATAAAATA * * * * 91262673 TATAGAAATATATAAAAATTATAAAATTTTATAAAGTTGTAAGAAAATTATATAAAATG 1 TAAAGAAATATATAAAAATTATAAAATTTTATAAAATAGTAA-AAAATT-TATAAAATA 91262732 TAAAGAAATATA 1 TAAAGAAATATA 91262744 AATTTCATAA Statistics Matches: 62, Mismatches: 6, Indels: 5 0.85 0.08 0.07 Matches are distributed among these distances: 57 8 0.13 58 27 0.44 59 27 0.44 ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33 Consensus pattern (57 bp): TAAAGAAATATATAAAAATTATAAAATTTTATAAAATAGTAAAAAATTTATAAAATA Found at i:91262943 original size:29 final size:29 Alignment explanation
Indices: 91262900--91262961 Score: 83 Period size: 29 Copynumber: 2.1 Consensus size: 29 91262890 TAGGGGTCGT 91262900 TAATTTTTTTATATTCTTTATT-AATTTTTA 1 TAATTTTTTTATATT-TTT-TTAAATTTTTA 91262930 TAATTTTTTT-TATTTTTTTAAAATTTTTA 1 TAATTTTTTTATATTTTTTT-AAATTTTTA 91262959 TAA 1 TAA 91262962 AAAAAGTTCT Statistics Matches: 30, Mismatches: 0, Indels: 5 0.86 0.00 0.14 Matches are distributed among these distances: 27 2 0.07 28 3 0.10 29 15 0.50 30 10 0.33 ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69 Consensus pattern (29 bp): TAATTTTTTTATATTTTTTTAAATTTTTA Found at i:91262946 original size:19 final size:20 Alignment explanation
Indices: 91262902--91262959 Score: 66 Period size: 20 Copynumber: 3.0 Consensus size: 20 91262892 GGGGTCGTTA 91262902 ATTTTTTTAT-ATTCTTTATT 1 ATTTTTTTATAATT-TTTATT * * 91262922 A-ATTTTTATAATTTTTTTT 1 ATTTTTTTATAATTTTTATT * 91262941 ATTTTTTTAAAATTTTTAT 1 ATTTTTTTATAATTTTTAT 91262960 AAAAAAAGTT Statistics Matches: 31, Mismatches: 5, Indels: 4 0.77 0.12 0.10 Matches are distributed among these distances: 19 13 0.42 20 18 0.58 ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72 Consensus pattern (20 bp): ATTTTTTTATAATTTTTATT Found at i:91263043 original size:19 final size:18 Alignment explanation
Indices: 91262995--91263045 Score: 59 Period size: 19 Copynumber: 2.7 Consensus size: 18 91262985 TTTTAAATTT 91262995 TTTATATTTTTATTAAAA 1 TTTATATTTTTATTAAAA * 91263013 TTTAATAATTTTT-CTAAAA 1 TTT-AT-ATTTTTATTAAAA 91263032 TTTATTATTTTTAT 1 TTTA-TATTTTTAT 91263046 AATTATTTTT Statistics Matches: 27, Mismatches: 2, Indels: 7 0.75 0.06 0.19 Matches are distributed among these distances: 18 10 0.37 19 11 0.41 20 6 0.22 ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63 Consensus pattern (18 bp): TTTATATTTTTATTAAAA Found at i:91263053 original size:19 final size:18 Alignment explanation
Indices: 91262995--91263047 Score: 63 Period size: 18 Copynumber: 2.9 Consensus size: 18 91262985 TTTTAAATTT 91262995 TTTA-TATTTTTATTAAAA 1 TTTATTATTTTTA-TAAAA * * 91263013 TTTAATAATTTTTCTAAAA 1 TTT-ATTATTTTTATAAAA 91263032 TTTATTATTTTTATAA 1 TTTATTATTTTTATAA 91263048 TTATTTTTTC Statistics Matches: 29, Mismatches: 4, Indels: 4 0.78 0.11 0.11 Matches are distributed among these distances: 18 14 0.48 19 9 0.31 20 6 0.21 ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60 Consensus pattern (18 bp): TTTATTATTTTTATAAAA Found at i:91263224 original size:89 final size:89 Alignment explanation
Indices: 91263069--91263292 Score: 276 Period size: 89 Copynumber: 2.5 Consensus size: 89 91263059 AATTTTTAAT * * * * * * 91263069 AAGAGTAGTGACTTAATTGCTTTTTTGAAAAATTTTGAAGG-TCTTTTTATGCATTTTAAAAGTT 1 AAGAGTAGGGGCTTAATTACTTTTTTCAAAAAGTTTGAAGGCTTTTTTTATGCATTTTAAAAGTT 91263133 CAAGTACCCAATTGA-GTAAAAAA 66 CAAGTACCCAATTGAGGTAAAAAA * * 91263156 AAGAGTAGGGGCTTAATTACTTTTTTTAAAGAAGTTTGAAGGCTTTTTTTATGCATTTTGAAAGT 1 AAGAGTAGGGGCTTAATTACTTTTTTCAAA-AAGTTTGAAGGCTTTTTTTATGCATTTTAAAAGT * * 91263221 TCAAGTGCTCAATTGAGTGTAAAAAA 65 TCAAGTACCCAATTGAG-GTAAAAAA * * * 91263247 AAAAG-AAGGGCTTAATTA-TTTTTTCAAAAAAGTTTGAGGGCTTTTT 1 AAGAGTAGGGGCTTAATTACTTTTTTC-AAAAAGTTTGAAGGCTTTTT 91263293 ACATAATTAA Statistics Matches: 119, Mismatches: 13, Indels: 8 0.85 0.09 0.06 Matches are distributed among these distances: 87 26 0.22 88 10 0.08 89 56 0.47 90 15 0.13 91 12 0.10 ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38 Consensus pattern (89 bp): AAGAGTAGGGGCTTAATTACTTTTTTCAAAAAGTTTGAAGGCTTTTTTTATGCATTTTAAAAGTT CAAGTACCCAATTGAGGTAAAAAA Found at i:91269110 original size:14 final size:14 Alignment explanation
Indices: 91269091--91269117 Score: 54 Period size: 14 Copynumber: 1.9 Consensus size: 14 91269081 GTTTGGCGGA 91269091 ATATTATAGGCAGG 1 ATATTATAGGCAGG 91269105 ATATTATAGGCAG 1 ATATTATAGGCAG 91269118 TTTGTCGAGG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30 Consensus pattern (14 bp): ATATTATAGGCAGG Found at i:91273357 original size:28 final size:28 Alignment explanation
Indices: 91273304--91273387 Score: 132 Period size: 28 Copynumber: 3.0 Consensus size: 28 91273294 CACTTTGTGC 91273304 TATTCTGGTGTGTTTTGGATGGATTATAT 1 TATTCTGGTGTGTTTTGGA-GGATTATAT * 91273333 TATTCTGGTGTGTTTGGGAGGATTATAT 1 TATTCTGGTGTGTTTTGGAGGATTATAT * * 91273361 GATACTGGTGTGTTTTGGAGGATTATA 1 TATTCTGGTGTGTTTTGGAGGATTATA 91273388 CTGGTGTGTT Statistics Matches: 51, Mismatches: 4, Indels: 1 0.91 0.07 0.02 Matches are distributed among these distances: 28 33 0.65 29 18 0.35 ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46 Consensus pattern (28 bp): TATTCTGGTGTGTTTTGGAGGATTATAT Found at i:91273399 original size:23 final size:24 Alignment explanation
Indices: 91273308--91273401 Score: 91 Period size: 28 Copynumber: 3.6 Consensus size: 24 91273298 TTGTGCTATT 91273308 CTGGTGTGTTTTGGATGGATTATATTA 1 CTGGTGTGTTTTGGA-GGA-TATA-TA * 91273335 TTCTGGTGTGTTTGGGAGGATTATATGATA 1 --CTGGTGTGTTTTGGAGG---ATAT-ATA 91273365 CTGGTGTGTTTTGGAGGAT-TATA 1 CTGGTGTGTTTTGGAGGATATATA 91273388 CTGGTGTGTTTTGG 1 CTGGTGTGTTTTGG 91273402 TTGGACATTT Statistics Matches: 59, Mismatches: 2, Indels: 14 0.79 0.03 0.19 Matches are distributed among these distances: 23 17 0.29 24 1 0.02 25 2 0.03 28 18 0.31 29 14 0.24 30 5 0.08 31 2 0.03 ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46 Consensus pattern (24 bp): CTGGTGTGTTTTGGAGGATATATA Found at i:91281247 original size:59 final size:60 Alignment explanation
Indices: 91281109--91281234 Score: 200 Period size: 59 Copynumber: 2.1 Consensus size: 60 91281099 ATGAAAGCGC * 91281109 ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAATGATTTCATTTTGGGTAACCAAA 1 ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA ** * * 91281169 ATGAAAGCTCCCTAAAAGTTG-GTGAGGAAATTGCAAAGATTTCATTTTTGGTGACCAAA 1 ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA 91281228 ATGAAAG 1 ATGAAAG 91281235 TGTCTTAAAA Statistics Matches: 61, Mismatches: 5, Indels: 1 0.91 0.07 0.01 Matches are distributed among these distances: 59 40 0.66 60 21 0.34 ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28 Consensus pattern (60 bp): ATGAAAGCTCCCTAAAAGTTGAGTGACAAAATTGCAAAGATTTCATTTTGGGTAACCAAA Found at i:91281991 original size:22 final size:22 Alignment explanation
Indices: 91281966--91282008 Score: 68 Period size: 22 Copynumber: 2.0 Consensus size: 22 91281956 TCAAAGGTTG * * 91281966 ATTTTGATTTGCAACCGATTTT 1 ATTTTGATTTGAAACCAATTTT 91281988 ATTTTGATTTGAAACCAATTT 1 ATTTTGATTTGAAACCAATTT 91282009 ACCGTGTGCT Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 22 19 1.00 ACGTcount: A:0.28, C:0.12, G:0.12, T:0.49 Consensus pattern (22 bp): ATTTTGATTTGAAACCAATTTT Found at i:91282639 original size:12 final size:12 Alignment explanation
Indices: 91282607--91282645 Score: 57 Period size: 12 Copynumber: 3.5 Consensus size: 12 91282597 TAAAATTAAA 91282607 AAATTAA-AAC- 1 AAATTAAGAACT 91282617 AAATT-AGAACT 1 AAATTAAGAACT 91282628 AAATTAAGAACT 1 AAATTAAGAACT 91282640 AAATTA 1 AAATTA 91282646 TATTAATAAC Statistics Matches: 26, Mismatches: 0, Indels: 4 0.87 0.00 0.13 Matches are distributed among these distances: 9 1 0.04 10 8 0.31 11 5 0.19 12 12 0.46 ACGTcount: A:0.62, C:0.08, G:0.05, T:0.26 Consensus pattern (12 bp): AAATTAAGAACT Found at i:91282713 original size:15 final size:15 Alignment explanation
Indices: 91282693--91282722 Score: 60 Period size: 15 Copynumber: 2.0 Consensus size: 15 91282683 TAAAAACAAC 91282693 AAAAAAAAGTAAAGT 1 AAAAAAAAGTAAAGT 91282708 AAAAAAAAGTAAAGT 1 AAAAAAAAGTAAAGT 91282723 TACTTAAAAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13 Consensus pattern (15 bp): AAAAAAAAGTAAAGT Found at i:91283873 original size:15 final size:15 Alignment explanation
Indices: 91283853--91283882 Score: 51 Period size: 15 Copynumber: 2.0 Consensus size: 15 91283843 TTTGATTTCA 91283853 ATTTTGATTTAGGTT 1 ATTTTGATTTAGGTT * 91283868 ATTTTGATTTTGGTT 1 ATTTTGATTTAGGTT 91283883 TTATTTGTTA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 15 14 1.00 ACGTcount: A:0.17, C:0.00, G:0.20, T:0.63 Consensus pattern (15 bp): ATTTTGATTTAGGTT Found at i:91283879 original size:6 final size:6 Alignment explanation
Indices: 91283630--91283862 Score: 256 Period size: 6 Copynumber: 38.7 Consensus size: 6 91283620 ATTTTGATTT * * * * 91283630 ATTTCG ATCTCA ATTTTG ATTTCG A-TTCTG ATTTCG ATTTTG ATTTCG 1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTC-G ATTTCG ATTTCG ATTTCG * * ** * * 91283678 ATTTCT ATTTCA ATTTCG ATTTTA ATTTCG ATTTTG ATTTC- ATTTTTG 1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG A-TTTCG ** 91283726 ATTTCG A-TTCTG ATTTTTT ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG 1 ATTTCG ATTTC-G A-TTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG 91283775 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG 1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG * * * * * 91283823 ATTTCG ATTTCA ATTTCA ATTTTG ATTTCA ATTTTG ATTT 1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTT 91283863 AGGTTATTTT Statistics Matches: 190, Mismatches: 30, Indels: 14 0.81 0.13 0.06 Matches are distributed among these distances: 5 7 0.04 6 176 0.93 7 5 0.03 8 2 0.01 ACGTcount: A:0.19, C:0.13, G:0.12, T:0.55 Consensus pattern (6 bp): ATTTCG Found at i:91284188 original size:62 final size:61 Alignment explanation
Indices: 91284121--91284250 Score: 197 Period size: 62 Copynumber: 2.1 Consensus size: 61 91284111 TTATTGTCTA * * * 91284121 TTATTGTATGCCATGTGTATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTATCAG 1 TTATTGTATGCCATGTGCATGACAAAAATGGTTGTATTTGTATTAAATTA-ATTTGTATCAG * ** 91284183 TTATTGTTTGCCATGTGCATGACAAAAATGGTTGTATTTGTATTAAATTAATTTGTATTGG 1 TTATTGTATGCCATGTGCATGACAAAAATGGTTGTATTTGTATTAAATTAATTTGTATCAG 91284244 TTATTGT 1 TTATTGT 91284251 CTAACAGAAA Statistics Matches: 62, Mismatches: 6, Indels: 1 0.90 0.09 0.01 Matches are distributed among these distances: 61 15 0.24 62 47 0.76 ACGTcount: A:0.27, C:0.06, G:0.19, T:0.48 Consensus pattern (61 bp): TTATTGTATGCCATGTGCATGACAAAAATGGTTGTATTTGTATTAAATTAATTTGTATCAG Done.