Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 309 of 328
Found at i:91814230 original size:13 final size:11
Alignment explanation
Indices: 91814198--91814240 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
91814188 CCATTTTCTA
*
91814198 AATAAAATAAT
1 AATAAAATATT
91814209 AAT-AAATATCT
1 AATAAAATAT-T
91814220 AAGTAAAATATT
1 AA-TAAAATATT
91814232 AATAAAATA
1 AATAAAATA
91814241 ATTTTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:91815232 original size:2 final size:2
Alignment explanation
Indices: 91815225--91815253 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
91815215 AATGCATTAT
91815225 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91815254 TTGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91815654 original size:3 final size:3
Alignment explanation
Indices: 91815614--91815641 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
91815604 AAATATTTTA
91815614 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
91815642 TTTCTTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:91821370 original size:35 final size:35
Alignment explanation
Indices: 91821343--91821508 Score: 163
Period size: 35 Copynumber: 4.6 Consensus size: 35
91821333 CATGGCAAAG
* *
91821343 TGTGAAATTTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
91821378 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
91821413 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
91821453 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
91821488 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
91821509 TTCAATGAGG
Statistics
Matches: 112, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 78 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:91821461 original size:75 final size:75
Alignment explanation
Indices: 91821343--91821513 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
91821333 CATGGCAAAG
* ** *
91821343 TGTGAAATTTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
91821402 CCATACTGAGC
65 CCATACCGAGC
91821413 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
91821478 CATACCGAGT
66 CATACCGAGC
**
91821488 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
91821514 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 17 0.20
73 4 0.05
74 5 0.06
75 61 0.70
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:91823120 original size:14 final size:14
Alignment explanation
Indices: 91823101--91823129 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91823091 TAATGTATTT
91823101 AATTTATATTACAA
1 AATTTATATTACAA
91823115 AATTTATATTACAA
1 AATTTATATTACAA
91823129 A
1 A
91823130 GTTTGTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:91823129 original size:62 final size:62
Alignment explanation
Indices: 91823053--91823181 Score: 240
Period size: 62 Copynumber: 2.1 Consensus size: 62
91823043 CAATGTACCT
*
91823053 AATTTATATTACAAAGTTTGTTCTAATTTCTAATGTTGTAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCTAATTTCTAATGTTATAATGTATTTAATTTATATTACAA
*
91823115 AATTTATATTACAAAGTTTGTTCTAATTTTTAATGTTATAATGTATTTAATTTATATTACAA
1 AATTTATATTACAAAGTTTGTTCTAATTTCTAATGTTATAATGTATTTAATTTATATTACAA
91823177 AATTT
1 AATTT
91823182 GTTCCAATTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.51
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTCTAATTTCTAATGTTATAATGTATTTAATTTATATTACAA
Found at i:91823168 original size:48 final size:47
Alignment explanation
Indices: 91823115--91823205 Score: 137
Period size: 48 Copynumber: 1.9 Consensus size: 47
91823105 TATATTACAA
* *
91823115 AATTTATATTACAAAGTTTGTTCTAATTTTTAATGTTATAATGTATTT
1 AATTTATATTACAAAATTTGTTCCAA-TTTTAATGTTATAATGTATTT
* *
91823163 AATTTATATTACAAAATTTGTTCCAATTTTAGTGTTTTAATGT
1 AATTTATATTACAAAATTTGTTCCAATTTTAATGTTATAATGT
91823206 TGTAATGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 15 0.38
48 24 0.62
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (47 bp):
AATTTATATTACAAAATTTGTTCCAATTTTAATGTTATAATGTATTT
Found at i:91823620 original size:33 final size:33
Alignment explanation
Indices: 91823535--91823626 Score: 87
Period size: 33 Copynumber: 2.8 Consensus size: 33
91823525 TAAACTTGAG
*
91823535 CCAGGAGGAGTGCTATACTGCGGTGGATACGAC
1 CCAGGAGGAGTGCTATAATGCGGTGGATACGAC
** * **
91823568 CCAACAGGAGTG-GAGTAATGCGGTGGATACGGG
1 CCAGGAGGAGTGCTA-TAATGCGGTGGATACGAC
* * *
91823601 TCGGGAGGAGTGCTATAATGCAGTGG
1 CCAGGAGGAGTGCTATAATGCGGTGG
91823627 TACTGGACTA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
32 1 0.02
33 43 0.96
34 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.40, T:0.18
Consensus pattern (33 bp):
CCAGGAGGAGTGCTATAATGCGGTGGATACGAC
Found at i:91823765 original size:18 final size:18
Alignment explanation
Indices: 91823742--91823782 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
91823732 TGTTGCGACC
*
91823742 GCTCGGGCTCAGGCTGTG
1 GCTCGGGATCAGGCTGTG
* *
91823760 GCTCGGGATCTGGCTTTG
1 GCTCGGGATCAGGCTGTG
91823778 GCTCG
1 GCTCG
91823783 ACCTCTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.27, G:0.41, T:0.27
Consensus pattern (18 bp):
GCTCGGGATCAGGCTGTG
Found at i:91824440 original size:14 final size:14
Alignment explanation
Indices: 91824421--91824450 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91824411 TACATGTTAG
*
91824421 AATAGTATCTTTAA
1 AATAGTATCATTAA
91824435 AATAGTATCATTAA
1 AATAGTATCATTAA
91824449 AA
1 AA
91824451 AAATGTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (14 bp):
AATAGTATCATTAA
Found at i:91826116 original size:29 final size:29
Alignment explanation
Indices: 91826075--91826134 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
91826065 ATCAACCTAC
* *
91826075 AACACACATAACATATAAATTACATAAAA
1 AACACACAAAACAAATAAATTACATAAAA
91826104 AACACACAAAACAAATAAATTACATAAAA
1 AACACACAAAACAAATAAATTACATAAAA
91826133 AA
1 AA
91826135 TAAAACATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17
Consensus pattern (29 bp):
AACACACAAAACAAATAAATTACATAAAA
Found at i:91826480 original size:15 final size:15
Alignment explanation
Indices: 91826429--91826483 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
91826419 TCCAACCCTC
* *
91826429 TTCTTCTCTTTCTTC
1 TTCTTCTCCTTCTTT
*
91826444 TTCATCT-CTTC-TT
1 TTCTTCTCCTTCTTT
91826457 TTCTTCTCCTTCTTT
1 TTCTTCTCCTTCTTT
91826472 TTCTTCTCCTTC
1 TTCTTCTCCTTC
91826484 ACTCACCGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
13 7 0.21
14 7 0.21
15 20 0.59
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.64
Consensus pattern (15 bp):
TTCTTCTCCTTCTTT
Found at i:91846879 original size:137 final size:137
Alignment explanation
Indices: 91846633--91846919 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
91846623 CATTGGGCCT
** *
91846633 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
91846698 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
91846763 CATATGC
131 CATATGC
91846770 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
91846835 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
91846900 CATATGC
131 CATATGC
91846907 AAGCCCATTTGGG
1 AAGCCCATTTGGG
91846920 GAGACTACTC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:91848743 original size:26 final size:26
Alignment explanation
Indices: 91848707--91848842 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
91848697 CATTATATTC
91848707 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
91848733 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
91848759 TTATCATGGAACATTTACCCAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91848785 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
91848811 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
91848837 TTATCA
1 TTATCA
91848843 GTTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:91849360 original size:23 final size:22
Alignment explanation
Indices: 91849317--91849361 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
91849307 TAACATAGTT
* *
91849317 TTAATAAATGCAGGAAAATCTC
1 TTAATAAATGAAAGAAAATCTC
91849339 TTAATAAATGGAAAGAAAATCTC
1 TTAATAAAT-GAAAGAAAATCTC
91849362 ATATACCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.27
Consensus pattern (22 bp):
TTAATAAATGAAAGAAAATCTC
Found at i:91851381 original size:40 final size:40
Alignment explanation
Indices: 91851326--91851403 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
91851316 GCATTTGAGT
* * *
91851326 GAAAATTGTATAATTTAGCCGGATGAAGTATGTATTAATA
1 GAAAACTGTATAATTTAACCGGATGAAGTAGGTATTAATA
91851366 GAAAACTGTATAATTTAACCGGATGAAGTAGGTATTAA
1 GAAAACTGTATAATTTAACCGGATGAAGTAGGTATTAA
91851404 CAGATATACT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (40 bp):
GAAAACTGTATAATTTAACCGGATGAAGTAGGTATTAATA
Found at i:91851433 original size:18 final size:18
Alignment explanation
Indices: 91851410--91851445 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
91851400 TTAACAGATA
91851410 TACTTAAAATCTAGTTGG
1 TACTTAAAATCTAGTTGG
91851428 TACTTAAAATCTAGTTGG
1 TACTTAAAATCTAGTTGG
91851446 ACTGCCACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
TACTTAAAATCTAGTTGG
Found at i:91852139 original size:16 final size:16
Alignment explanation
Indices: 91852118--91852156 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
91852108 TGAATTACTT
* *
91852118 ATTACAGCTCTTTTCA
1 ATTACAGCCCTATTCA
*
91852134 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCA
91852150 ATTACAG
1 ATTACAG
91852157 TGAACCAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.36
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:91854022 original size:26 final size:27
Alignment explanation
Indices: 91853993--91854048 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
91853983 TTCTAAGGTC
* * *
91853993 TATTTCTTTTTTCGTTTTGTTAAC-TA
1 TATTTATTTATTCATTTTGTTAACATA
*
91854019 TATTTATTTATTCATTTTTTTAACATA
1 TATTTATTTATTCATTTTGTTAACATA
91854046 TAT
1 TAT
91854049 GTATACATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.64
Consensus pattern (27 bp):
TATTTATTTATTCATTTTGTTAACATA
Found at i:91859500 original size:21 final size:20
Alignment explanation
Indices: 91859473--91859524 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
91859463 CCAACAGTAA
*
91859473 AAAAAAAAAAACTTTGAAAACG
1 AAAAAAAAAAGC--TGAAAACG
*
91859495 AAAAAAAAAAGCTGAAAATG
1 AAAAAAAAAAGCTGAAAACG
91859515 AAAAAAAAAA
1 AAAAAAAAAA
91859525 AAGGGACATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 17 0.61
22 11 0.39
ACGTcount: A:0.75, C:0.06, G:0.10, T:0.10
Consensus pattern (20 bp):
AAAAAAAAAAGCTGAAAACG
Found at i:91859525 original size:21 final size:22
Alignment explanation
Indices: 91859472--91859526 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
91859462 CCCAACAGTA
91859472 AAAAAAAAAAAACTTTGAAAACG
1 AAAAAAAAAAAAC-TTGAAAACG
* *
91859495 -AAAAAAAAAAGC-TGAAAATG
1 AAAAAAAAAAAACTTGAAAACG
91859515 AAAAAAAAAAAA
1 AAAAAAAAAAAA
91859527 GGGACATGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 7 0.25
21 10 0.36
22 11 0.39
ACGTcount: A:0.76, C:0.05, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAAAAAAAAAACTTGAAAACG
Found at i:91860124 original size:150 final size:149
Alignment explanation
Indices: 91859827--91860153 Score: 428
Period size: 150 Copynumber: 2.2 Consensus size: 149
91859817 TAAGTATAAC
*
91859827 ATTTTCGTATATTATTTTTTAAAATATATTATTTACGTATTTTATTTTTTATATTATTTTAGCAA
1 ATTTTCGTATATTATTTTTTAAAATATATTATTTACATATTTTATTTTTTATATTATTTTAGCAA
**
91859892 AAAGTGTTTCAAATGTATTACTTAAGTGTTTTTTATATTAATTTAATAAATAACTCTGACTTTGG
66 AAAGTGTTTCAAATGTATTACTTAAGTGTTTTTTATATTAATTTAATAAATAACTCTGACTTTAC
* *
91859957 TACCTTGTTCGTATTTTTT
131 CACCTTATTCGTATTTTTT
* * * *
91859976 AATTTTCGGATTTTATTTTTTAAAATATATTATTTTCATATTTTATTTCTTTATATTATTTTAGT
1 -ATTTTCGTATATTATTTTTTAAAATATATTATTTACATATTTTATTT-TTTATATTATTTTAGC
** * * *
91860041 ACATTA-TGTTTCAAATGTATTATTTAAGTGTTTTTTGTATT-TTTTAATAAATAA-TCCTGA-T
64 A-AAAAGTGTTTCAAATGTATTACTTAAGTGTTTTTTATATTAATTTAATAAATAACT-CTGACT
* *
91860102 TTACCACTTTATTTGTATTTTTT
127 TTACCACCTTATTCGTATTTTTT
* *
91860125 ACTTTCGTATATTATTTTTTTAAATATAT
1 ATTTTCGTATATTATTTTTTAAAATATAT
91860154 ATAATACATT
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
148 25 0.16
149 19 0.12
150 59 0.38
151 49 0.32
152 2 0.01
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (149 bp):
ATTTTCGTATATTATTTTTTAAAATATATTATTTACATATTTTATTTTTTATATTATTTTAGCAA
AAAGTGTTTCAAATGTATTACTTAAGTGTTTTTTATATTAATTTAATAAATAACTCTGACTTTAC
CACCTTATTCGTATTTTTT
Found at i:91860712 original size:20 final size:20
Alignment explanation
Indices: 91860687--91860735 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
91860677 CATATCCCTT
91860687 TTTTTTTTTCATTTTCAGCA-
1 TTTTTTTTTCATTTTCAG-AG
*
91860707 TTTTTTTTTCGTTTTCAGAG
1 TTTTTTTTTCATTTTCAGAG
91860727 TTTTTTTTT
1 TTTTTTTTT
91860736 TTTACTGTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.10, C:0.10, G:0.08, T:0.71
Consensus pattern (20 bp):
TTTTTTTTTCATTTTCAGAG
Found at i:91864378 original size:32 final size:32
Alignment explanation
Indices: 91864341--91864422 Score: 119
Period size: 32 Copynumber: 2.6 Consensus size: 32
91864331 TTGCAATTAG
*
91864341 TTTGTTGGATTTTGAAATTATTATATTTTAAA
1 TTTGTTGGATATTGAAATTATTATATTTTAAA
* * *
91864373 TTTGTTGGATATTGAATTTATTATGTTTTAAG
1 TTTGTTGGATATTGAAATTATTATATTTTAAA
*
91864405 CTTGTTGGATATTGAAAT
1 TTTGTTGGATATTGAAAT
91864423 GATTGACAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.28, C:0.01, G:0.17, T:0.54
Consensus pattern (32 bp):
TTTGTTGGATATTGAAATTATTATATTTTAAA
Found at i:91865914 original size:29 final size:29
Alignment explanation
Indices: 91865880--91865938 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
91865870 TGACAAATAG
91865880 AAAACCACACATAAATAGCAAAATATCTA
1 AAAACCACACATAAATAGCAAAATATCTA
91865909 AAAACCACACATAAATAGCAAAATATCTA
1 AAAACCACACATAAATAGCAAAATATCTA
91865938 A
1 A
91865939 CTCAAATTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.59, C:0.20, G:0.03, T:0.17
Consensus pattern (29 bp):
AAAACCACACATAAATAGCAAAATATCTA
Found at i:91869690 original size:503 final size:503
Alignment explanation
Indices: 91868738--91869743 Score: 1985
Period size: 503 Copynumber: 2.0 Consensus size: 503
91868728 GGGTGAGTTT
*
91868738 GTGGTGATTTGAAAGCGTGATGCTGTATGGTGCGGTGGTATGGGACCCTTTGCTTATTTTAGCCA
1 GTGGGGATTTGAAAGCGTGATGCTGTATGGTGCGGTGGTATGGGACCCTTTGCTTATTTTAGCCA
91868803 AAATTGTTTACCTCAAGTGTTTATACTACCTTACACTTCTATGGTGTGAGGGTGGCAGGGTGAGG
66 AAATTGTTTACCTCAAGTGTTTATACTACCTTACACTTCTATGGTGTGAGGGTGGCAGGGTGAGG
91868868 AGTGATAAAGATGGAAGTAGGGATGGACAGTGATGAGGATTAGTGATTTTTATGGTAGGTGTTGG
131 AGTGATAAAGATGGAAGTAGGGATGGACAGTGATGAGGATTAGTGATTTTTATGGTAGGTGTTGG
91868933 ATCGGCCAGACAAGTAGTTTTTGCTATTAGGAATAGAAAGCTTGCAAAAGAAAACACGAACTCCA
196 ATCGGCCAGACAAGTAGTTTTTGCTATTAGGAATAGAAAGCTTGCAAAAGAAAACACGAACTCCA
91868998 CTTATACCTCTTTGAAATTTTAGTGCCCTAATTCCTATGTTGCGGGGTAAGGCACCACCTGTCCT
261 CTTATACCTCTTTGAAATTTTAGTGCCCTAATTCCTATGTTGCGGGGTAAGGCACCACCTGTCCT
*
91869063 GATCTAGAATTGCCGCCACAGACGACTGAGCTTCCTCAACCCACAAGCTACTGCCTCCTTGTCCA
326 GATCTAGAATTGCCGCCACAGACGACTGAGCTTCCTCAACCCAAAAGCTACTGCCTCCTTGTCCA
91869128 AAACTTTCTTTAGCTAGAGTGTGCGCAACTTTTATTCCCCTATCTCGGAATGAATTCAAATCGAC
391 AAACTTTCTTTAGCTAGAGTGTGCGCAACTTTTATTCCCCTATCTCGGAATGAATTCAAATCGAC
91869193 TACTTTCAAAATGACCTAATAAATGCTTTATATCCTATATATAGGCAC
456 TACTTTCAAAATGACCTAATAAATGCTTTATATCCTATATATAGGCAC
91869241 GTGGGGATTTGAAAGCGTGATGCTGTATGGTGCGGTGGTATGGGACCCTTTGCTTATTTTAGCCA
1 GTGGGGATTTGAAAGCGTGATGCTGTATGGTGCGGTGGTATGGGACCCTTTGCTTATTTTAGCCA
91869306 AAATTGTTTACCTCAAGTGTTTATACTACCTTACACTTCTATGGTGTGAGGGTGGCAGGGTGAGG
66 AAATTGTTTACCTCAAGTGTTTATACTACCTTACACTTCTATGGTGTGAGGGTGGCAGGGTGAGG
91869371 AGTGATAAAGATGGAAGTAGGGATGGACAGTGATGAGGATTAGTGATTTTTATGGTAGGTGTTGG
131 AGTGATAAAGATGGAAGTAGGGATGGACAGTGATGAGGATTAGTGATTTTTATGGTAGGTGTTGG
91869436 ATCGGCCAGACAAGTAGTTTTTGCTATTAGGAATAGAAAGCTTGCAAAAGAAAACACGAACTCCA
196 ATCGGCCAGACAAGTAGTTTTTGCTATTAGGAATAGAAAGCTTGCAAAAGAAAACACGAACTCCA
*
91869501 CTTATACCTCTTTGAAATTTTAGTGCCCTGATTCCTATGTTGCGGGGTAAGGCACCACCTGTCCT
261 CTTATACCTCTTTGAAATTTTAGTGCCCTAATTCCTATGTTGCGGGGTAAGGCACCACCTGTCCT
91869566 GATCTAGAATTGCCGCCACAGACGACTGAGCTTCCTCAACCCAAAAGCTACTGCCTCCTTGTCCA
326 GATCTAGAATTGCCGCCACAGACGACTGAGCTTCCTCAACCCAAAAGCTACTGCCTCCTTGTCCA
91869631 AAACTTTCTTTAGCTAGAGTGTGCGCAACTTTTATTCCCCTATCTCGGAATGAATTCAAATCGAC
391 AAACTTTCTTTAGCTAGAGTGTGCGCAACTTTTATTCCCCTATCTCGGAATGAATTCAAATCGAC
91869696 TACTTTCAAAATGACCTAATAAATGCTTTATATCCTATATATAGGCAC
456 TACTTTCAAAATGACCTAATAAATGCTTTATATCCTATATATAGGCAC
91869744 TAACCTTCGA
Statistics
Matches: 500, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
503 500 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (503 bp):
GTGGGGATTTGAAAGCGTGATGCTGTATGGTGCGGTGGTATGGGACCCTTTGCTTATTTTAGCCA
AAATTGTTTACCTCAAGTGTTTATACTACCTTACACTTCTATGGTGTGAGGGTGGCAGGGTGAGG
AGTGATAAAGATGGAAGTAGGGATGGACAGTGATGAGGATTAGTGATTTTTATGGTAGGTGTTGG
ATCGGCCAGACAAGTAGTTTTTGCTATTAGGAATAGAAAGCTTGCAAAAGAAAACACGAACTCCA
CTTATACCTCTTTGAAATTTTAGTGCCCTAATTCCTATGTTGCGGGGTAAGGCACCACCTGTCCT
GATCTAGAATTGCCGCCACAGACGACTGAGCTTCCTCAACCCAAAAGCTACTGCCTCCTTGTCCA
AAACTTTCTTTAGCTAGAGTGTGCGCAACTTTTATTCCCCTATCTCGGAATGAATTCAAATCGAC
TACTTTCAAAATGACCTAATAAATGCTTTATATCCTATATATAGGCAC
Found at i:91875634 original size:19 final size:19
Alignment explanation
Indices: 91875610--91875649 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91875600 ATTAATTTCG
91875610 ATCAAATAAAATAAAATTA
1 ATCAAATAAAATAAAATTA
* *
91875629 ATCAAATTAATTAAAATTA
1 ATCAAATAAAATAAAATTA
91875648 AT
1 AT
91875650 ATGATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
ATCAAATAAAATAAAATTA
Found at i:91876418 original size:2 final size:2
Alignment explanation
Indices: 91876411--91876459 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
91876401 TTCTAGTATG
91876411 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91876453 TA TA TA T
1 TA TA TA T
91876460 TAAATTGTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91877367 original size:2 final size:2
Alignment explanation
Indices: 91877360--91877390 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91877350 AGAAAACAAG
91877360 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91877391 GATTCCTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91878017 original size:46 final size:43
Alignment explanation
Indices: 91877964--91878088 Score: 126
Period size: 46 Copynumber: 2.7 Consensus size: 43
91877954 AAAATTAGAA
* *
91877964 AAAAATATAAAATAATAAAAATTTATAGAAAATTATTAAATTTTA-
1 AAAAATATAAAA-AATAAAATTTTATA-AAAATTA-GAAATTTTAC
* *
91878009 ATAAAATATATAAAAATGAGAATTTTATTAAAAATTAGAATTTTTAC
1 A-AAAATATA-AAAAAT-AAAATTTTA-TAAAAATTAGAAATTTTAC
91878056 AAAAATAGTAAAAAAATAAAATTTTATAAAAAT
1 AAAAATA-T-AAAAAATAAAATTTTATAAAAAT
91878089 CATAAAAAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
45 8 0.12
46 32 0.47
47 25 0.37
48 3 0.04
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (43 bp):
AAAAATATAAAAAATAAAATTTTATAAAAATTAGAAATTTTAC
Found at i:91878022 original size:19 final size:20
Alignment explanation
Indices: 91877968--91878023 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
91877958 TTAGAAAAAA
91877968 ATATAAAATA-ATAAAAATTT
1 ATATAAAATATAT-AAAATTT
* *
91877988 ATAGAAAAT-TATTAAATTT
1 ATATAAAATATATAAAATTT
91878007 -TAATAAAATATATAAAA
1 AT-ATAAAATATATAAAA
91878024 ATGAGAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 12 0.41
20 16 0.55
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
ATATAAAATATATAAAATTT
Found at i:91878059 original size:18 final size:18
Alignment explanation
Indices: 91878020--91878061 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
91878010 TAAAATATAT
*
91878020 AAAAATGAGAATTTTATT
1 AAAAATGAGAATTTTATC
*
91878038 AAAAATTAGAATTTT-TAC
1 AAAAATGAGAATTTTAT-C
91878056 AAAAAT
1 AAAAAT
91878062 AGTAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.36
Consensus pattern (18 bp):
AAAAATGAGAATTTTATC
Found at i:91878314 original size:9 final size:9
Alignment explanation
Indices: 91878290--91878493 Score: 50
Period size: 9 Copynumber: 22.7 Consensus size: 9
91878280 TTTCTTACGA
*
91878290 TTTTATAAAA
1 TTTTAT-AAT
91878300 TTTTATAAT
1 TTTTATAAT
91878309 TTTTAT-AT
1 TTTTATAAT
*
91878317 TTCTAT-AT
1 TTTTATAAT
* *
91878325 ATATATATAT
1 TTTTATA-AT
* *
91878335 ATATATATAT
1 TTTTATA-AT
*
91878345 ATTTA--AT
1 TTTTATAAT
*
91878352 TTTTATGAT
1 TTTTATAAT
*
91878361 TTTTATAAAA
1 TTTTAT-AAT
**
91878371 TTTTGCAACT
1 TTTTATAA-T
*
91878381 TTTTATATT
1 TTTTATAAT
*
91878390 TTCTTATGAT
1 TT-TTATAAT
91878400 TTTTATAA-
1 TTTTATAAT
91878408 TTTT-TAAT
1 TTTTATAAT
* *
91878416 ATTTGA-AAA
1 -TTTTATAAT
*
91878425 TTTTATTAAAA
1 TTTTA-T-AAT
*
91878436 TTTAATAAT
1 TTTTATAAT
* **
91878445 ATTTATAGC
1 TTTTATAAT
91878454 TTTTATTAA-
1 TTTTA-TAAT
*
91878463 TTTTA-ATT
1 TTTTATAAT
91878471 TTTTAT-AT
1 TTTTATAAT
*
91878479 TTTTTTAAT
1 TTTTATAAT
91878488 TTTTAT
1 TTTTAT
91878494 TAAAAGTAAT
Statistics
Matches: 145, Mismatches: 32, Indels: 35
0.68 0.15 0.17
Matches are distributed among these distances:
7 10 0.07
8 32 0.22
9 54 0.37
10 42 0.29
11 7 0.05
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:91878327 original size:2 final size:2
Alignment explanation
Indices: 91878320--91878346 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
91878310 TTTATATTTC
91878320 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
91878347 TTAATTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91884421 original size:7 final size:7
Alignment explanation
Indices: 91884399--91884449 Score: 68
Period size: 7 Copynumber: 7.3 Consensus size: 7
91884389 TAATTAATTT
91884399 TTTTAAA
1 TTTTAAA
*
91884406 TATTAAAA
1 T-TTTAAA
91884414 TTTTAAA
1 TTTTAAA
91884421 TTTTAAA
1 TTTTAAA
91884428 TTTTAAA
1 TTTTAAA
91884435 TTTT-AA
1 TTTTAAA
*
91884441 TATTAAA
1 TTTTAAA
91884448 TT
1 TT
91884450 AATTGCTTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
6 5 0.13
7 27 0.71
8 6 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
TTTTAAA
Found at i:91888078 original size:30 final size:29
Alignment explanation
Indices: 91888003--91888078 Score: 73
Period size: 30 Copynumber: 2.5 Consensus size: 29
91887993 TTGACATATG
* *
91888003 AATTTTAATTTGGTATAATTATACAAATAA
1 AATTTTAATTTGATTTAATTATAC-AATAA
* *
91888033 AATTTTGACTGTGATTTAATGTATAC-ATAA
1 AATTTT-AATTTGATTTAAT-TATACAATAA
91888063 AATTTTAATTTTGATT
1 AATTTTAA-TTTGATT
91888079 CAATCACATA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
29 1 0.03
30 22 0.59
31 9 0.24
32 5 0.14
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.47
Consensus pattern (29 bp):
AATTTTAATTTGATTTAATTATACAATAA
Found at i:91896818 original size:21 final size:20
Alignment explanation
Indices: 91896794--91896841 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
91896784 GAAGCAAAAT
91896794 AAAATAAAAAATAAAGAGAAA
1 AAAATAAAAAATAAA-AGAAA
*
91896815 AAAAT-AAAATTAAAAGAAA
1 AAAATAAAAAATAAAAGAAA
*
91896834 AAATTAAA
1 AAAATAAA
91896842 TTGCTCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 9 0.38
20 10 0.42
21 5 0.21
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (20 bp):
AAAATAAAAAATAAAAGAAA
Found at i:91896823 original size:19 final size:19
Alignment explanation
Indices: 91896794--91896841 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
91896784 GAAGCAAAAT
*
91896794 AAAATAAAAAATAAAGAGAAA
1 AAAAT-AAAATTAAA-AGAAA
91896815 AAAATAAAATTAAAAGAAA
1 AAAATAAAATTAAAAGAAA
*
91896834 AAATTAAA
1 AAAATAAA
91896842 TTGCTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 12 0.48
20 8 0.32
21 5 0.20
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (19 bp):
AAAATAAAATTAAAAGAAA
Found at i:91896875 original size:36 final size:36
Alignment explanation
Indices: 91896835--91896907 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
91896825 TAAAAGAAAA
91896835 AATTAAATTGCTCAAAATGAAAAAATATGGGGACCG
1 AATTAAATTGCTCAAAATGAAAAAATATGGGGACCG
91896871 AATTAAATTGCTCAAAATGAAAAAATATGGGGACCG
1 AATTAAATTGCTCAAAATGAAAAAATATGGGGACCG
91896907 A
1 A
91896908 TTATATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (36 bp):
AATTAAATTGCTCAAAATGAAAAAATATGGGGACCG
Found at i:91898736 original size:17 final size:17
Alignment explanation
Indices: 91898714--91898751 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
91898704 GTTATTTATT
91898714 TTTTTA-ATTTTATGAAC
1 TTTTTATATTTTATG-AC
*
91898731 TTTTTATATTTTTTGAC
1 TTTTTATATTTTATGAC
91898748 TTTT
1 TTTT
91898752 CACTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTTATATTTTATGAC
Found at i:91922295 original size:33 final size:33
Alignment explanation
Indices: 91922227--91922300 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
91922217 TTTTTGCTTC
*
91922227 TTTAA-ATTAAAATTAAAGCTCTGATAAAAAAA
1 TTTAATATTAAAATTAAAGCTCTAATAAAAAAA
* * *
91922259 TTTAATATT-AAATTAAAGCTTTAAATAATAATA
1 TTTAATATTAAAATTAAAGCTCT-AATAAAAAAA
91922292 TTTAATATT
1 TTTAATATT
91922301 TTTAATAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 17 0.47
33 19 0.53
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (33 bp):
TTTAATATTAAAATTAAAGCTCTAATAAAAAAA
Found at i:91922337 original size:19 final size:19
Alignment explanation
Indices: 91922313--91922352 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
91922303 TAATAATTTT
*
91922313 ATTTTTTT-CTATTTTTCTA
1 ATTTTTTTAC-ATTTTTATA
91922332 ATTTTTTTACATTTTTATA
1 ATTTTTTTACATTTTTATA
91922351 AT
1 AT
91922353 AATGTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTTTTACATTTTTATA
Found at i:91922457 original size:18 final size:18
Alignment explanation
Indices: 91922436--91922481 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
91922426 CTAGATTATA
91922436 TATATTTTTATGATTTTT
1 TATATTTTTATGATTTTT
*
91922454 TATATATTTCT-TTATTTTT
1 TATAT-TTT-TATGATTTTT
91922473 T-TATTTTTA
1 TATATTTTTA
91922482 CACATATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
16 1 0.04
17 3 0.12
18 8 0.33
19 11 0.46
20 1 0.04
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (18 bp):
TATATTTTTATGATTTTT
Found at i:91922472 original size:20 final size:21
Alignment explanation
Indices: 91922431--91922476 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
91922421 TTTTTCTAGA
91922431 TTATATATATTTTTATGATTTT
1 TTATATATATTTTTAT-ATTTT
91922453 TTATATAT-TTCTTTAT-TTTT
1 TTATATATATT-TTTATATTTT
91922473 TTAT
1 TTAT
91922477 TTTTACACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
22 13 0.57
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (21 bp):
TTATATATATTTTTATATTTT
Found at i:91937757 original size:23 final size:23
Alignment explanation
Indices: 91937730--91937775 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
91937720 AAATTTAATA
91937730 AATTTTTATTTTGGTTTCTCATT
1 AATTTTTATTTTGGTTTCTCATT
91937753 AATTTTTATTTTGGTTTCTCATT
1 AATTTTTATTTTGGTTTCTCATT
91937776 TTATCTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.09, G:0.09, T:0.65
Consensus pattern (23 bp):
AATTTTTATTTTGGTTTCTCATT
Found at i:91937918 original size:18 final size:17
Alignment explanation
Indices: 91937885--91937917 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
91937875 TTTTATAGGG
91937885 ATTTTTTTATCTTTTTA
1 ATTTTTTTATCTTTTTA
91937902 ATTTTCTTTAT-TTTTT
1 ATTTT-TTTATCTTTTT
91937918 TTCCTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (17 bp):
ATTTTTTTATCTTTTTA
Found at i:91943519 original size:44 final size:44
Alignment explanation
Indices: 91943466--91943567 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
91943456 TGTCTTTGAC
* * *
91943466 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTG-CTCCAAAGCCATATTATAAT
** *
91943510 ATGGACTTACATGGCTCAATCCTGCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGCTCCAAAGCCATA-TTATAAT
91943555 ATGGACTTACATG
1 ATGGACTTACATG
91943568 GCTCATTTCG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
43 12 0.24
44 20 0.40
45 18 0.36
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGAATCAATCCTGCTCCAAAGCCATATTATAAT
Found at i:91943566 original size:45 final size:44
Alignment explanation
Indices: 91943466--91943572 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 44
91943456 TGTCTTTGAC
** * * *
91943466 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
91943510 ATGGACTTACATGGCTCAATCCTG-CTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
91943555 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
91943573 TTTCGTTCTG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
43 12 0.22
44 20 0.36
45 23 0.42
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:91945470 original size:46 final size:45
Alignment explanation
Indices: 91945410--91945713 Score: 357
Period size: 46 Copynumber: 7.0 Consensus size: 45
91945400 TTTGACATGA
* * * * * *
91945410 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** **
91945456 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
91945502 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
91945548 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
91945594 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
91945632 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
91945670 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
91945714 AGAGCACACT
Statistics
Matches: 233, Mismatches: 15, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
38 72 0.31
40 3 0.01
43 1 0.00
44 3 0.01
45 4 0.02
46 147 0.63
47 3 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:91945639 original size:38 final size:38
Alignment explanation
Indices: 91945588--91945701 Score: 228
Period size: 38 Copynumber: 3.0 Consensus size: 38
91945578 ACATTTTATA
91945588 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
91945626 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
91945664 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
91945702 ATTTCATATC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:91947860 original size:11 final size:11
Alignment explanation
Indices: 91947844--91947895 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
91947834 TATACTAAAT
91947844 AAATAATAATA
1 AAATAATAATA
*
91947855 AAATAAT-ATT
1 AAATAATAATA
* *
91947865 AAATATCTCATA
1 AAATA-ATAATA
*
91947877 AAATATTAATA
1 AAATAATAATA
91947888 AAATAATA
1 AAATAATA
91947896 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:91962225 original size:64 final size:64
Alignment explanation
Indices: 91962104--91962225 Score: 165
Period size: 64 Copynumber: 1.9 Consensus size: 64
91962094 TTATTTTAAC
* * * *
91962104 ATAAATTTTAATGATTATTATTTAAAATAAATATAATTTTTTTTCTATATATAAATATCATTTA
1 ATAAATTTTAATGACTATTATTTAAAATAAATATAATTTTATATATATATATAAATATCATTTA
* * *
91962168 ATAAGTTTTAATGACTATTATTTAACATAAATATAATTTTGATATATATA-ATTAATAT
1 ATAAATTTTAATGACTATTATTTAAAATAAATATAATTTT-ATATATATATATAAATAT
91962226 ATAATTAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
64 44 0.88
65 6 0.12
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (64 bp):
ATAAATTTTAATGACTATTATTTAAAATAAATATAATTTTATATATATATATAAATATCATTTA
Found at i:91962236 original size:9 final size:11
Alignment explanation
Indices: 91962211--91962238 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
91962201 TAATTTTGAT
91962211 ATATATAATTA
1 ATATATAATTA
91962222 ATATATAATTA
1 ATATATAATTA
91962233 ATATAT
1 ATATAT
91962239 TTTTATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATATATAATTA
Found at i:91964090 original size:42 final size:42
Alignment explanation
Indices: 91964036--91964120 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
91964026 AAATTTACCC
91964036 ATTCTTATAATCTAAAAAATAAAGGGATTGAAATTGAAATTT
1 ATTCTTATAATCTAAAAAATAAAGGGATTGAAATTGAAATTT
*
91964078 ATTCTTATAATCTAATAAATAAAGGGATTGAAATTGAAATTT
1 ATTCTTATAATCTAAAAAATAAAGGGATTGAAATTGAAATTT
91964120 A
1 A
91964121 CTCATGATGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.36
Consensus pattern (42 bp):
ATTCTTATAATCTAAAAAATAAAGGGATTGAAATTGAAATTT
Found at i:91964749 original size:50 final size:50
Alignment explanation
Indices: 91964674--91964778 Score: 210
Period size: 50 Copynumber: 2.1 Consensus size: 50
91964664 AATAAGTCGA
91964674 ATTTTTGAAATTTTATAGGAATGGGTTGGTTTTGGTAAAACCCTTCCAGC
1 ATTTTTGAAATTTTATAGGAATGGGTTGGTTTTGGTAAAACCCTTCCAGC
91964724 ATTTTTGAAATTTTATAGGAATGGGTTGGTTTTGGTAAAACCCTTCCAGC
1 ATTTTTGAAATTTTATAGGAATGGGTTGGTTTTGGTAAAACCCTTCCAGC
91964774 ATTTT
1 ATTTT
91964779 CAAAATTTCG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (50 bp):
ATTTTTGAAATTTTATAGGAATGGGTTGGTTTTGGTAAAACCCTTCCAGC
Found at i:91968476 original size:14 final size:14
Alignment explanation
Indices: 91968438--91968475 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
91968428 AATTGTAATT
91968438 TATTATCAAAATATA
1 TATTAT-AAAATATA
*
91968453 TATTCTAAAATATA
1 TATTATAAAATATA
91968467 T-TTATAAAA
1 TATTATAAAA
91968476 AATACAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 7 0.33
14 9 0.43
15 5 0.24
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (14 bp):
TATTATAAAATATA
Found at i:91969006 original size:7 final size:7
Alignment explanation
Indices: 91968996--91969021 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91968986 CTTCAAAACG
91968996 CAAAAGT
1 CAAAAGT
91969003 CAAAAGT
1 CAAAAGT
91969010 CAAAAGT
1 CAAAAGT
91969017 CAAAA
1 CAAAA
91969022 ACACATAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.15, G:0.12, T:0.12
Consensus pattern (7 bp):
CAAAAGT
Found at i:91971927 original size:8 final size:8
Alignment explanation
Indices: 91971914--91971939 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
91971904 GAACTTGTTA
91971914 AAAAATAT
1 AAAAATAT
91971922 AAAAATAT
1 AAAAATAT
91971930 AAAAATAT
1 AAAAATAT
91971938 AA
1 AA
91971940 GAAGACAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAATAT
Found at i:91978757 original size:222 final size:222
Alignment explanation
Indices: 91978371--91978816 Score: 883
Period size: 222 Copynumber: 2.0 Consensus size: 222
91978361 CGAGCTGACA
91978371 ATATATCACCAACTCGGGCATAAGATGCTATAAGATTGCCAACGGAGTTTTTATGGCCGGTTTGG
1 ATATATCACCAACTCGGGCATAAGATGCTATAAGATTGCCAACGGAGTTTTTATGGCCGGTTTGG
*
91978436 ATCATCAAGGCGTGAATTTTTGCTATGGGTTTCTTGTCTTTGCAGGCTAAGAGCAGAGGTTTAAG
66 ATCATCAAGGCGAGAATTTTTGCTATGGGTTTCTTGTCTTTGCAGGCTAAGAGCAGAGGTTTAAG
91978501 ATGTTTTCGCCATTTAAGAGACTGCATTGCAAGTTAATCTATAGCCGTTGCATAGAAGACAACTG
131 ATGTTTTCGCCATTTAAGAGACTGCATTGCAAGTTAATCTATAGCCGTTGCATAGAAGACAACTG
91978566 CAAAAGGAGCTGCACTCTAAAAATGGT
196 CAAAAGGAGCTGCACTCTAAAAATGGT
91978593 ATATATCACCAACTCGGGCATAAGATGCTATAAGATTGCCAACGGAGTTTTTATGGCCGGTTTGG
1 ATATATCACCAACTCGGGCATAAGATGCTATAAGATTGCCAACGGAGTTTTTATGGCCGGTTTGG
91978658 ATCATCAAGGCGAGAATTTTTGCTATGGGTTTCTTGTCTTTGCAGGCTAAGAGCAGAGGTTTAAG
66 ATCATCAAGGCGAGAATTTTTGCTATGGGTTTCTTGTCTTTGCAGGCTAAGAGCAGAGGTTTAAG
91978723 ATGTTTTCGCCATTTAAGAGACTGCATTGCAAGTTAATCTATAGCCGTTGCATAGAAGACAACTG
131 ATGTTTTCGCCATTTAAGAGACTGCATTGCAAGTTAATCTATAGCCGTTGCATAGAAGACAACTG
91978788 CAAAAGGAGCTGCACTCTAAAAATGGT
196 CAAAAGGAGCTGCACTCTAAAAATGGT
91978815 AT
1 AT
91978817 TGGATGAGAC
Statistics
Matches: 223, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
222 223 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (222 bp):
ATATATCACCAACTCGGGCATAAGATGCTATAAGATTGCCAACGGAGTTTTTATGGCCGGTTTGG
ATCATCAAGGCGAGAATTTTTGCTATGGGTTTCTTGTCTTTGCAGGCTAAGAGCAGAGGTTTAAG
ATGTTTTCGCCATTTAAGAGACTGCATTGCAAGTTAATCTATAGCCGTTGCATAGAAGACAACTG
CAAAAGGAGCTGCACTCTAAAAATGGT
Found at i:91987823 original size:11 final size:11
Alignment explanation
Indices: 91987805--91987843 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
91987795 AAAAATATAC
91987805 TATTTTCTTGT
1 TATTTTCTTGT
* *
91987816 TGTTTTCTTAT
1 TATTTTCTTGT
*
91987827 TATTTTGTTGT
1 TATTTTCTTGT
91987838 TATTTT
1 TATTTT
91987844 TTCACTGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.10, C:0.05, G:0.10, T:0.74
Consensus pattern (11 bp):
TATTTTCTTGT
Found at i:91990565 original size:45 final size:45
Alignment explanation
Indices: 91990501--91990590 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
91990491 GATTACAAAA
91990501 CTAAATCTCAACATTTTCAAGCCTTTTCATGCGAGGTATATCAAT
1 CTAAATCTCAACATTTTCAAGCCTTTTCATGCGAGGTATATCAAT
91990546 CTAAATCTCAACATTTTCAAGCCTTTTCATGCGAGGTATATCAAT
1 CTAAATCTCAACATTTTCAAGCCTTTTCATGCGAGGTATATCAAT
91990591 ACTTTTGTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (45 bp):
CTAAATCTCAACATTTTCAAGCCTTTTCATGCGAGGTATATCAAT
Found at i:92001500 original size:22 final size:21
Alignment explanation
Indices: 92001452--92001501 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
92001442 AGTGCAAATT
* * *
92001452 CAAATATAAATTGTTTATAAA
1 CAAATTTAAATTATTAATAAA
92001473 CTAAATTTAAATTATTAATTAAA
1 C-AAATTTAAATTATTAA-TAAA
92001496 CAAATT
1 CAAATT
92001502 AATTTAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 18 0.75
23 5 0.21
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (21 bp):
CAAATTTAAATTATTAATAAA
Found at i:92001761 original size:31 final size:31
Alignment explanation
Indices: 92001720--92001783 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
92001710 TGGTCTCACT
* *
92001720 ATTTGGCACAATTCTATTGAACAATTTAATG
1 ATTTGACACAATTATATTGAACAATTTAATG
92001751 ATTTGACACAATTATATTGAACAATTTAATG
1 ATTTGACACAATTATATTGAACAATTTAATG
92001782 AT
1 AT
92001784 AAACTCTCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (31 bp):
ATTTGACACAATTATATTGAACAATTTAATG
Found at i:92001763 original size:18 final size:17
Alignment explanation
Indices: 92001736--92001783 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 17
92001726 CACAATTCTA
92001736 TTGAACAATTTAATGAT
1 TTGAACAATTTAATGAT
92001753 TTGACACAA-TT-AT-A-
1 TTGA-ACAATTTAATGAT
92001767 TTGAACAATTTAATGAT
1 TTGAACAATTTAATGAT
92001784 AAACTCTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
13 4 0.15
14 6 0.23
15 3 0.12
16 3 0.12
17 6 0.23
18 4 0.15
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (17 bp):
TTGAACAATTTAATGAT
Found at i:92002320 original size:47 final size:47
Alignment explanation
Indices: 92002295--92002385 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 47
92002285 AATATTTATT
* * *
92002295 GATAAATATTAGATTAAATTTAATATTAAATCTTATTAAAATAATAA
1 GATAAACATTAAATTAAATTTAATATTAAATCTAATTAAAATAATAA
92002342 GATAAACATTAAATTAAATTTAATATTAAA-CT-ATTAAAATAATA
1 GATAAACATTAAATTAAATTTAATATTAAATCTAATTAAAATAATA
92002386 TTAAACAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 12 0.29
46 2 0.05
47 28 0.67
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (47 bp):
GATAAACATTAAATTAAATTTAATATTAAATCTAATTAAAATAATAA
Found at i:92002389 original size:25 final size:24
Alignment explanation
Indices: 92002309--92002389 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 24
92002299 AATATTAGAT
92002309 TAAATTTAATATTAAATCTTATTAAAA
1 TAAA-TTAATATTAAA-C-TATTAAAA
* *
92002336 T-AA-TAAGA-TAAAC-ATTAAAT
1 TAAATTAATATTAAACTATTAAAA
92002356 TAAATTTAATATTAAACTATTAAAA
1 TAAA-TTAATATTAAACTATTAAAA
92002381 TAATATTAA
1 TAA-ATTAA
92002390 ACAAAATCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
20 7 0.16
21 2 0.05
22 1 0.02
23 8 0.18
24 9 0.20
25 13 0.30
26 3 0.07
27 1 0.02
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.40
Consensus pattern (24 bp):
TAAATTAATATTAAACTATTAAAA
Found at i:92003516 original size:42 final size:42
Alignment explanation
Indices: 92003470--92003578 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 42
92003460 ATAGTTCAAT
*
92003470 TATGGTCTTACACATCTTCACATAAT-GATGCCATAACCCAGC
1 TATGGTCTTACACATATTCACAT-ATCGATGCCATAACCCAGC
* * *
92003512 TATGGTCTTACACATATTCATATATCGATGCCATAGCCCATC
1 TATGGTCTTACACATATTCACATATCGATGCCATAACCCAGC
*
92003554 TATGATCTTACACGA-A-TCACATATC
1 TATGGTCTTACAC-ATATTCACATATC
92003579 TCACTGATGC
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.17
42 48 0.81
43 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (42 bp):
TATGGTCTTACACATATTCACATATCGATGCCATAACCCAGC
Found at i:92003677 original size:7 final size:7
Alignment explanation
Indices: 92003665--92003693 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
92003655 TATACGGAAA
92003665 TCACTTG
1 TCACTTG
92003672 TCACTTG
1 TCACTTG
92003679 TCACTTG
1 TCACTTG
92003686 TCACTTG
1 TCACTTG
92003693 T
1 T
92003694 AGCCGGAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:92003727 original size:31 final size:31
Alignment explanation
Indices: 92003692--92003840 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
92003682 CTTGTCACTT
*
92003692 GTAGCCGGAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* * *
92003723 GTAGCCGGAGCTACAACTATTCACTGATTAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
92003754 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
92003785 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
92003816 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
92003841 TGTCATTTGT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 110 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:92003922 original size:50 final size:50
Alignment explanation
Indices: 92003816--92003992 Score: 266
Period size: 50 Copynumber: 3.5 Consensus size: 50
92003806 CACTGATCAG
* * * * *
92003816 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTATCCTTGATCAGATAAGT
92003867 GTAGCCGAAGCTATCACTTATCACTTTCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCA-TTTATCCTTGATCAGATAAGT
* *
92003917 GTAGCCGAAACTATTACTTATCACTTTCATTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTATCCTTGATCAGATAAGT
92003967 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
92003993 GTTGCCATGG
Statistics
Matches: 116, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
49 3 0.03
50 87 0.75
51 26 0.22
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTATCCTTGATCAGATAAGT
Found at i:92013818 original size:14 final size:14
Alignment explanation
Indices: 92013795--92013824 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
92013785 TTGAAAATAT
92013795 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
92013809 GTTGATTTGGATTG
1 GTTGAATTGGATTG
92013823 GT
1 GT
92013825 CTCGATATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:92015747 original size:21 final size:21
Alignment explanation
Indices: 92015722--92015764 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
92015712 ATTTTTTTAA
*
92015722 TTTAAAAATTAAAAAAACTAT
1 TTTAAAAATAAAAAAAACTAT
*
92015743 TTTAAAAATAAAAAAAATTAT
1 TTTAAAAATAAAAAAAACTAT
92015764 T
1 T
92015765 AAAATATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
TTTAAAAATAAAAAAAACTAT
Found at i:92015749 original size:20 final size:20
Alignment explanation
Indices: 92015721--92015758 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92015711 AATTTTTTTA
*
92015721 ATTTAAAAATTAAAAAAACT
1 ATTTAAAAAATAAAAAAACT
*
92015741 ATTTTAAAAATAAAAAAA
1 ATTTAAAAAATAAAAAAA
92015759 ATTATTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
ATTTAAAAAATAAAAAAACT
Found at i:92015766 original size:19 final size:19
Alignment explanation
Indices: 92015723--92015789 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
92015713 TTTTTTTAAT
92015723 TTAAAAATTAAAAAAACTATT-
1 TTAAAAA-TAAAAAAA--ATTA
92015744 TTAAAAATAAAAAAAATTA
1 TTAAAAATAAAAAAAATTA
* *
92015763 TT-AAAATATTATAAAATTA
1 TTAAAAATA-AAAAAAATTA
92015782 -TAAAAATA
1 TTAAAAATA
92015790 TTTTTAATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 10 0.24
19 16 0.39
20 8 0.20
21 7 0.17
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAAAAATAAAAAAAATTA
Found at i:92015824 original size:28 final size:27
Alignment explanation
Indices: 92015740--92015824 Score: 71
Period size: 28 Copynumber: 3.0 Consensus size: 27
92015730 TTAAAAAAAC
* * *
92015740 TATTTTAAAAATAAAAAAAATTATTAAAA
1 TATTATAAAATTATAAAAAATTATT--AA
*
92015769 TATTATAAAATTATAAAAATATTTTTAA
1 TATTATAAAATTATAAAAA-ATTATTAA
* * *
92015797 TATTTTTAAATTCTAAAAAATTAATTAA
1 TATTATAAAATTATAAAAAATT-ATTAA
92015825 ATGCTAACAT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.07
28 22 0.48
29 16 0.35
30 5 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (27 bp):
TATTATAAAATTATAAAAAATTATTAA
Found at i:92015953 original size:24 final size:25
Alignment explanation
Indices: 92015912--92015960 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
92015902 TTTGAACAAT
** *
92015912 TTAACAAAAAATTTAAATTCAAAAA
1 TTAACAAAAAATGAAAATTAAAAAA
92015937 TTAA-AAAAAATGAAAATTAAAAAA
1 TTAACAAAAAATGAAAATTAAAAAA
92015961 ATAATTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (25 bp):
TTAACAAAAAATGAAAATTAAAAAA
Found at i:92025135 original size:190 final size:190
Alignment explanation
Indices: 92024810--92025190 Score: 681
Period size: 190 Copynumber: 2.0 Consensus size: 190
92024800 ACTTCCAATC
92024810 AGCGAACTTTAGGTAACCTTCAGAATTGGGTTACTAATCAGATATTCCAACTTTCTTTCTTAACA
1 AGCGAACTTTAGGTAACCTTCAGAATTGGGTTACTAATCAGATATTCCAACTTTCTTTCTTAACA
*
92024875 ATCAGCCAACAAATTACTTAAACCTGTTGCAGCCCTTTATGATGGCAACGATCCCAGCGTGGAGT
66 ATCAGCCAACAAATTACTTAAACCTGTTGCAGCCCTTTATGATGGCAACGATCCCAGCGTGGAAT
*
92024940 CTGAACCCGATGAAACATTGGCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG
131 CTGAACCCGAGGAAACATTGGCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG
* *
92025000 AGCGAACTTTAGGTAAGCTTCAGAATTGGGTTACTAATCAGATATTGCAACTTTCTTTCTTAACA
1 AGCGAACTTTAGGTAACCTTCAGAATTGGGTTACTAATCAGATATTCCAACTTTCTTTCTTAACA
* * **
92025065 ATCAGCCAACAAATTACTTAAACCTGTTGCAGCCCTTTGTTATGGCAACGATCCCAGTTTGGAAT
66 ATCAGCCAACAAATTACTTAAACCTGTTGCAGCCCTTTATGATGGCAACGATCCCAGCGTGGAAT
*
92025130 CTGAACCCGAGGAAACATTGGCAGCTCTGAAAAGCAAAATGAAACCAAACTCTAAAAGTG
131 CTGAACCCGAGGAAACATTGGCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG
92025190 A
1 A
92025191 CGGTAAGAAG
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
190 182 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (190 bp):
AGCGAACTTTAGGTAACCTTCAGAATTGGGTTACTAATCAGATATTCCAACTTTCTTTCTTAACA
ATCAGCCAACAAATTACTTAAACCTGTTGCAGCCCTTTATGATGGCAACGATCCCAGCGTGGAAT
CTGAACCCGAGGAAACATTGGCAGCTCTGAAAAGCAAAATGAAACCAAAATCTAAAAGTG
Found at i:92026534 original size:22 final size:23
Alignment explanation
Indices: 92026506--92026562 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
92026496 TACCAAATTG
* * *
92026506 AATTAAAAACACTT-AAGAACCA
1 AATTAAAAAAAATTAAAAAACCA
92026528 AATTAAAAAAAATTAAAAAACCA
1 AATTAAAAAAAATTAAAAAACCA
92026551 AATTAAAAAAAA
1 AATTAAAAAAAA
92026563 ATTGTGAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 12 0.39
23 19 0.61
ACGTcount: A:0.70, C:0.11, G:0.02, T:0.18
Consensus pattern (23 bp):
AATTAAAAAAAATTAAAAAACCA
Found at i:92026555 original size:13 final size:13
Alignment explanation
Indices: 92026523--92026560 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
92026513 AACACTTAAG
92026523 AACCAAATT-AAA
1 AACCAAATTAAAA
92026535 AA--AAATTAAAA
1 AACCAAATTAAAA
92026546 AACCAAATTAAAA
1 AACCAAATTAAAA
92026559 AA
1 AA
92026561 AAATTGTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
10 5 0.22
11 5 0.22
12 2 0.09
13 11 0.48
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.16
Consensus pattern (13 bp):
AACCAAATTAAAA
Found at i:92027106 original size:26 final size:25
Alignment explanation
Indices: 92027070--92027126 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
92027060 CAGCAAAAAA
*
92027070 ATAAATAAATAAATAATCCATCAAAT
1 ATAAATAAATAAAAAATCCAT-AAAT
* *
92027096 ATAATTAAATAAAAAATGCATAAAT
1 ATAAATAAATAAAAAATCCATAAAT
*
92027121 ACAAAT
1 ATAAAT
92027127 TTAATCTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.26
Consensus pattern (25 bp):
ATAAATAAATAAAAAATCCATAAAT
Found at i:92036506 original size:6 final size:6
Alignment explanation
Indices: 92036495--92036530 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
92036485 GTTTCTTTTC
*
92036495 TTTCTT TTTCTT TTTCTT TTTCTT TTT-TT CTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT T
92036531 GGTGTGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTCTT
Found at i:92040540 original size:18 final size:18
Alignment explanation
Indices: 92040519--92040554 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
92040509 TCATTGGATT
92040519 GGTTAATTGGATTGGTTA
1 GGTTAATTGGATTGGTTA
92040537 GGTTAATTGGATTGGTTA
1 GGTTAATTGGATTGGTTA
92040555 ATTGTGTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (18 bp):
GGTTAATTGGATTGGTTA
Found at i:92040558 original size:13 final size:13
Alignment explanation
Indices: 92040511--92040536 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92040501 ACATGACATC
92040511 ATTGGATTGGTTA
1 ATTGGATTGGTTA
92040524 ATTGGATTGGTTA
1 ATTGGATTGGTTA
92040537 GGTTAATTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (13 bp):
ATTGGATTGGTTA
Found at i:92042560 original size:222 final size:222
Alignment explanation
Indices: 92042159--92042603 Score: 741
Period size: 222 Copynumber: 2.0 Consensus size: 222
92042149 GACTTTAATA
* *
92042159 GTTGATTAAGTCTTCGCTCGATTGGTATAAATATTGTTATCAATGCAGAAGAATATGGGTTCGAG
1 GTTGATTAAGTATTCGCTCGATTGGTATAAATATTATTATCAATGCAGAAGAATATGGGTTCGAG
* *
92042224 TGCACTAATGCGTAATATCCTCTTATTGATGAGTTGGGAGGGGCTGTAAGTAGTTTTAGGCATTG
66 TACACTAATGCGTAATA----C-TA-T-ATGAGTTGGGAGGGGCTGTAAGTAGTTTTAAGCATTG
*
92042289 TGTCAAAAAGAACAAATATGATCAGAACCACCTATAATGAGAATTAAACTGACTTTTGTAAGGTA
124 TGTCAAAAAGAACAAATATGATCAGAACCACCTATAATGAGAATTAAACTAACTTTTGTAAGGTA
92042354 ATTGAATCGAACATCTTCAAACTATCATTATCAAT
189 ATTGAATCGAACATCTTC-AACTATCATTATCAAT
*
92042389 GTTGATTAAGTATTCGCTCGATTGGTATAAATATTATTATCAATGCAGAAGAATGTGGGTTCGAG
1 GTTGATTAAGTATTCGCTCGATTGGTATAAATATTATTATCAATGCAGAAGAATATGGGTTCGAG
92042454 TACACTAATGCGTAATA-TA-ATGAGTTGGGGAGGGGCTGTAAGTAGTTTTAAGCATTGTGTCAA
66 TACACTAATGCGTAATACTATATGAGTT-GGGAGGGGCTGTAAGTAGTTTTAAGCATTGTGTCAA
92042517 AAAGAACAAATATGATCAGAACCACCTATAATGAGAATTAAACTAACTTTTGTAAGGTAATTGAA
130 AAAGAACAAATATGATCAGAACCACCTATAATGAGAATTAAACTAACTTTTGTAAGGTAATTGAA
92042582 TCGAACATCTTCAACTATCATT
195 TCGAACATCTTCAACTATCATT
92042604 TATATTTTAA
Statistics
Matches: 208, Mismatches: 6, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
221 17 0.08
222 111 0.53
224 2 0.01
230 78 0.38
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (222 bp):
GTTGATTAAGTATTCGCTCGATTGGTATAAATATTATTATCAATGCAGAAGAATATGGGTTCGAG
TACACTAATGCGTAATACTATATGAGTTGGGAGGGGCTGTAAGTAGTTTTAAGCATTGTGTCAAA
AAGAACAAATATGATCAGAACCACCTATAATGAGAATTAAACTAACTTTTGTAAGGTAATTGAAT
CGAACATCTTCAACTATCATTATCAAT
Found at i:92048779 original size:34 final size:33
Alignment explanation
Indices: 92048740--92048811 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
92048730 GCACATGTAC
92048740 CAAATTACGA-AAAAAAAATGAT-AAGTTCAAGTAT
1 CAAATT-CGACAAAAAAAA-G-TCAAGTTCAAGTAT
* *
92048774 CAAATTGGACAAAAAAAAGTCAAGTTTAAGTAT
1 CAAATTCGACAAAAAAAAGTCAAGTTCAAGTAT
92048807 CAAAT
1 CAAAT
92048812 ATTATATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 1 0.03
33 19 0.56
34 14 0.41
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (33 bp):
CAAATTCGACAAAAAAAAGTCAAGTTCAAGTAT
Found at i:92049973 original size:16 final size:17
Alignment explanation
Indices: 92049941--92049974 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
92049931 AATAATATTT
92049941 TTAATAAAATATTAAAA
1 TTAATAAAATATTAAAA
*
92049958 TTAATAAGAT-TTAAAA
1 TTAATAAAATATTAAAA
92049974 T
1 T
92049975 AAAAATTACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TTAATAAAATATTAAAA
Found at i:92062253 original size:41 final size:43
Alignment explanation
Indices: 92062202--92062284 Score: 111
Period size: 41 Copynumber: 2.0 Consensus size: 43
92062192 ATTTTAATAT
92062202 TTTAAAATTAAATT-TA-AATTATAA-A-ATTATTTGATAAATCA
1 TTTAAAATT-AATTATAGAA-TATAATAGATTATTTGATAAATCA
92062243 TTTAAAATTAATTATAGAATATAATTAGATTATTTGATAAAT
1 TTTAAAATTAATTATAGAATATAA-TAGATTATTTGATAAAT
92062285 ATATATTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
40 4 0.11
41 16 0.43
42 2 0.05
43 1 0.03
44 14 0.38
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.45
Consensus pattern (43 bp):
TTTAAAATTAATTATAGAATATAATAGATTATTTGATAAATCA
Found at i:92062285 original size:22 final size:22
Alignment explanation
Indices: 92062216--92062288 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
92062206 AAATTAAATT
92062216 TAAAT-TA-TAAAATTATTTGA
1 TAAATATATTAAAATTATTTGA
*
92062236 TAAATCAT-TTAAAATTAATT-A
1 TAAAT-ATATTAAAATTATTTGA
*
92062257 TAGAATATAATT-AGATTATTTGA
1 TA-AATAT-ATTAAAATTATTTGA
92062280 TAAATATAT
1 TAAATATAT
92062289 ATTTTAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.12
21 7 0.16
22 26 0.60
23 5 0.12
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.44
Consensus pattern (22 bp):
TAAATATATTAAAATTATTTGA
Found at i:92063248 original size:25 final size:25
Alignment explanation
Indices: 92063220--92063286 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
92063210 GCACAACTCT
92063220 TTTTTTATATTAAAATATTTTTTTA
1 TTTTTTATATTAAAATATTTTTTTA
* *
92063245 TTTTTTAAAATAAAATA-TTTTTTA
1 TTTTTTATATTAAAATATTTTTTTA
*
92063269 -TTTTTAT-TAAAAATATTT
1 TTTTTTATATTAAAATATTT
92063287 AAATTTATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 6 0.17
23 8 0.22
24 7 0.19
25 15 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTTTTATATTAAAATATTTTTTTA
Found at i:92063614 original size:14 final size:14
Alignment explanation
Indices: 92063582--92063652 Score: 60
Period size: 14 Copynumber: 5.2 Consensus size: 14
92063572 CCTGCCACTG
*
92063582 GAAGAGAGAAA-GA
1 GAAGAAAGAAAGGA
92063595 -AAGAAAGAAAGGA
1 GAAGAAAGAAAGGA
*
92063608 GAAGAAAAAAAGAAGA
1 GAAGAAAGAAAG--GA
*
92063624 GAAG-AAG-AAGAA
1 GAAGAAAGAAAGGA
*
92063636 GAAGAAAGAAAGAA
1 GAAGAAAGAAAGGA
92063650 GAA
1 GAA
92063653 AAAAAAGTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
12 14 0.29
13 5 0.10
14 21 0.44
15 2 0.04
16 6 0.12
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
GAAGAAAGAAAGGA
Found at i:92063621 original size:11 final size:12
Alignment explanation
Indices: 92063586--92063659 Score: 62
Period size: 11 Copynumber: 5.9 Consensus size: 12
92063576 CCACTGGAAG
92063586 AGAGAAAGAAAGA
1 AGAGAAA-AAAGA
**
92063599 A-AGAAAGGAGA
1 AGAGAAAAAAGA
92063610 AGA-AAAAAAGA
1 AGAGAAAAAAGA
92063621 AGAGAAGAAGAAGA
1 AGAGAA-AA-AAGA
92063635 AGAAGAAAGAAAGA
1 AG-AGAAA-AAAGA
*
92063649 AGAAAAAAAAG
1 AGAGAAAAAAG
92063660 TAATGTTTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
11 13 0.26
12 12 0.24
13 7 0.14
14 13 0.26
15 5 0.10
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
AGAGAAAAAAGA
Found at i:92063623 original size:3 final size:3
Alignment explanation
Indices: 92063607--92063652 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
92063597 GAAAGAAAGG
*
92063607 AGA AGA A-A AAA AGA AG- AGA AGA AGA AGA AGA AGAA AGAA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AG-A AGA AGA
92063652 A
1 A
92063653 AAAAAAGTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
2 4 0.10
3 28 0.72
4 7 0.18
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:92063764 original size:43 final size:43
Alignment explanation
Indices: 92063716--92063802 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
92063706 AGTTAAAATC
92063716 GAAACCCTCTAATGGATATTGATACCTTGCTTTGATTATTTAA
1 GAAACCCTCTAATGGATATTGATACCTTGCTTTGATTATTTAA
92063759 GAAACCCTCTAATGGATATTGATACCTTGCTTTGATTATTTAA
1 GAAACCCTCTAATGGATATTGATACCTTGCTTTGATTATTTAA
92063802 G
1 G
92063803 CTTCACTATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (43 bp):
GAAACCCTCTAATGGATATTGATACCTTGCTTTGATTATTTAA
Found at i:92064781 original size:60 final size:60
Alignment explanation
Indices: 92064701--92064819 Score: 157
Period size: 60 Copynumber: 2.0 Consensus size: 60
92064691 ATTTTTTTTA
* * * * * *
92064701 TAATAATTTTAAAGGTAATTTGTTAGTAATTTAGAATTATGTTATTAATTTTTGTGTTTG
1 TAATAATTTTAAAAGTAATTTATTAGTAATTTAGAATTAAGTTATAAATTATTGCGTTTG
* * *
92064761 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTATTGCGTTT
1 TAATAATTTTAAAAGTAATTTATTAGTAATTTAGAATTAAGTTATAAATTATTGCGTTT
92064820 AGTTTAGTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.52
Consensus pattern (60 bp):
TAATAATTTTAAAAGTAATTTATTAGTAATTTAGAATTAAGTTATAAATTATTGCGTTTG
Found at i:92065305 original size:15 final size:15
Alignment explanation
Indices: 92065285--92065313 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92065275 TTTGTATTTT
92065285 TAATGTAATTTTATA
1 TAATGTAATTTTATA
92065300 TAATGTAATTTTAT
1 TAATGTAATTTTAT
92065314 TTGGTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
TAATGTAATTTTATA
Found at i:92067362 original size:33 final size:33
Alignment explanation
Indices: 92067320--92067412 Score: 123
Period size: 33 Copynumber: 2.8 Consensus size: 33
92067310 CAGCCTACTA
*
92067320 CCACCTCAGTACTCAACTCCTTTCGGCCCGTAT
1 CCACCTCAGTACTCAACTCCTTTCGGCCCATAT
* *
92067353 CCACCTCAGTACTCCACTCCTTTCGGTCCATAT
1 CCACCTCAGTACTCAACTCCTTTCGGCCCATAT
* * * *
92067386 CCACCACCGTACTCTACTCCTCTCGGC
1 CCACCTCAGTACTCAACTCCTTTCGGC
92067413 TCAAGTTCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.17, C:0.45, G:0.11, T:0.27
Consensus pattern (33 bp):
CCACCTCAGTACTCAACTCCTTTCGGCCCATAT
Found at i:92067699 original size:76 final size:78
Alignment explanation
Indices: 92067604--92067747 Score: 202
Period size: 76 Copynumber: 1.9 Consensus size: 78
92067594 AATAACTTCA
* * *
92067604 TATTTATGTAATAATTTTTTTGGCATTTTATTTATCAA-TCTAAGTTTTTT-TTTTGCAATTTAA
1 TATTTATGTAATAACTTTTTTGACATTTTATTTATCAATTCTAAGTTTTTTATTTTGAAATTTAA
92067667 ATAGTCAACTTTG
66 ATAGTCAACTTTG
* * * **
92067680 TATTTATTTAATGACTTTTTTGACATTTTATTTATCAATTTTATTTTTTTTATTTTGAAATTTAA
1 TATTTATGTAATAACTTTTTTGACATTTTATTTATCAATTCTAAGTTTTTTATTTTGAAATTTAA
92067745 ATA
66 ATA
92067748 AATAGACTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 34 0.59
77 9 0.16
78 15 0.26
ACGTcount: A:0.28, C:0.06, G:0.07, T:0.58
Consensus pattern (78 bp):
TATTTATGTAATAACTTTTTTGACATTTTATTTATCAATTCTAAGTTTTTTATTTTGAAATTTAA
ATAGTCAACTTTG
Found at i:92071029 original size:26 final size:27
Alignment explanation
Indices: 92070996--92071052 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
92070986 TACTGATCCG
*
92070996 AAAATAAAAAAAATATTTT-ATTTAAA
1 AAAATAAAAAAAATATTTTAATATAAA
92071022 AAAATAAAAAAAATATTTTAATATAAA
1 AAAATAAAAAAAATATTTTAATATAAA
92071049 AAAA
1 AAAA
92071053 GAGTCGCGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAATAAAAAAAATATTTTAATATAAA
Found at i:92071483 original size:29 final size:30
Alignment explanation
Indices: 92071422--92071494 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
92071412 TTAATAAAAT
* *
92071422 AAAATTATACTTTAAGTCCTTTAAACTAATA
1 AAAATTA-AATTTAAGTCCTTTAAAATAATA
* *
92071453 AAAATTAAATTTAA-TCGTTTAAAATTATA
1 AAAATTAAATTTAAGTCCTTTAAAATAATA
*
92071482 AAAACATAAATTT
1 AAAA-TTAAATTT
92071495 TTAAAAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 16 0.44
30 13 0.36
31 7 0.19
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAATTAAATTTAAGTCCTTTAAAATAATA
Found at i:92073407 original size:12 final size:12
Alignment explanation
Indices: 92073390--92073414 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92073380 TAATATTTTT
92073390 ATAATATTAAAA
1 ATAATATTAAAA
92073402 ATAATATTAAAA
1 ATAATATTAAAA
92073414 A
1 A
92073415 ATTTATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAATATTAAAA
Found at i:92077005 original size:16 final size:16
Alignment explanation
Indices: 92076984--92077016 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
92076974 TAGCTTGAAA
92076984 GTCGTCTAAATCATGT
1 GTCGTCTAAATCATGT
92077000 GTCGTCTAAATCATGT
1 GTCGTCTAAATCATGT
92077016 G
1 G
92077017 CCGATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (16 bp):
GTCGTCTAAATCATGT
Found at i:92078887 original size:65 final size:65
Alignment explanation
Indices: 92078781--92078936 Score: 253
Period size: 65 Copynumber: 2.4 Consensus size: 65
92078771 AGCGGTAAAA
92078781 ATGATAAAAATAATAATGATAATAATAATATATAAAATAATAATAATAGTAAAAAAGATAATAAG
1 ATGATAAAAATAATAATG---ATAATAATATATAAAATAATAATAATAGTAAAAAAGATAATAAG
92078846 AAT
63 AAT
92078849 ATGATAAAAATAATAATGATAATAATATATAAAATAATAATAATAGTAAAAAAGATAATAAGAAT
1 ATGATAAAAATAATAATGATAATAATATATAAAATAATAATAATAGTAAAAAAGATAATAAGAAT
* *
92078914 A-G-TAACAATAATAATGGTAATAA
1 ATGATAAAAATAATAATGATAATAA
92078937 CGATAATAAA
Statistics
Matches: 86, Mismatches: 2, Indels: 5
0.92 0.02 0.05
Matches are distributed among these distances:
63 19 0.22
64 1 0.01
65 48 0.56
68 18 0.21
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.28
Consensus pattern (65 bp):
ATGATAAAAATAATAATGATAATAATATATAAAATAATAATAATAGTAAAAAAGATAATAAGAAT
Found at i:92078950 original size:25 final size:22
Alignment explanation
Indices: 92078944--92079091 Score: 64
Period size: 22 Copynumber: 6.8 Consensus size: 22
92078934 TAACGATAAT
*
92078944 AAATAATAGTAGTAA-ATAATAA
1 AAATAATAATAGTAATA-AATAA
92078966 AAATAATAATAGTAAT-AATGAGA
1 AAATAATAATAGTAATAAAT-A-A
*
92078989 AGATTAATAATAGTAAT-AATAA
1 A-AATAATAATAGTAATAAATAA
** * *
92079011 TGATAATAGTAATAGA-AAATAA
1 AAATAATAATAGTA-ATAAATAA
*
92079033 AAAAAATAA-A--AA-AAATATA
1 AAATAATAATAGTAATAAATA-A
** *
92079052 ATAATAGCAATAGCAATAAA-AA
1 A-AATAATAATAGTAATAAATAA
92079074 TAAA-AATAATAGTAATAA
1 -AAATAATAATAGTAATAA
92079092 TAAGGGTAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 27
0.69 0.12 0.19
Matches are distributed among these distances:
18 6 0.06
19 3 0.03
20 5 0.05
21 25 0.26
22 30 0.31
23 7 0.07
24 20 0.21
ACGTcount: A:0.65, C:0.01, G:0.09, T:0.25
Consensus pattern (22 bp):
AAATAATAATAGTAATAAATAA
Found at i:92079204 original size:3 final size:3
Alignment explanation
Indices: 92078679--92079184 Score: 267
Period size: 3 Copynumber: 167.7 Consensus size: 3
92078669 GTCATAATAC
* * *
92078679 AAT AGT AAT AGT AAT TAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * **
92078727 AAT AAT AAT AAA ACAT AAT AGT AAT AAT AAT GAT AAT AAAT ATT AGC
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
** * * * *
92078774 GGT AAA AAT GAT AAA AAT AAT AAT GAT AAT AAT AAT ATAT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * * * *
92078819 AAT AAT AAT AGT AA- AAA AGAT AAT AAG AAT -AT GAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
92078863 AAT GAT AAT AAT ATAT AA- AAT AAT AAT AAT AGT AA- AAA AGAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* * * ** * * *
92078908 AAG AAT AGT AAC AAT AAT AAT GGT AAT AAC GAT AAT AAAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * * * * * *
92078954 AGT AAAT AAT AAA AAT AAT AAT AGT AAT AAT GAG AAG ATT AAT AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
92079000 AGT AAT AAT AAT GAT AAT AGT AAT AGAA AAT AAA AAA AAT AAA AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
** ** * * *
92079046 AAT -AT AAT AAT AGC AAT AGC AAT AAA AAT AAA AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * * *
92079093 AAG GGT AAT AGT AAT AAT AAC AAT AAT -GT AAAT AAT AAT -AT ACAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-AT
* * *
92079138 -AT GAAT AAT AAT AAT AAT AA- AGT AAT TAT AATT AAT AGT AAT AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
92079183 AA
1 AA
92079185 ACAACAGAAA
Statistics
Matches: 370, Mismatches: 110, Indels: 46
0.70 0.21 0.09
Matches are distributed among these distances:
2 18 0.05
3 322 0.87
4 30 0.08
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:92079442 original size:11 final size:12
Alignment explanation
Indices: 92079425--92079453 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
92079415 CTTCCATTGC
92079425 TATTTGTTTTTG
1 TATTTGTTTTTG
92079437 -ATTTGTTTTTG
1 TATTTGTTTTTG
92079448 TATTTG
1 TATTTG
92079454 AACACCTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.10, C:0.00, G:0.17, T:0.72
Consensus pattern (12 bp):
TATTTGTTTTTG
Found at i:92081738 original size:42 final size:41
Alignment explanation
Indices: 92081683--92081812 Score: 145
Period size: 42 Copynumber: 3.1 Consensus size: 41
92081673 TAACCGAATG
* * *
92081683 AACCAAAGCAAATATATTGACACATAAGTGTATCATCAGCTA
1 AACCAAAGCAAATATACTGACACATAAGTGCATCATC-GTTA
* * *
92081725 AACCGAAGTAAATATACT-AGTACATAAGTGCATCATCGGTTA
1 AACCAAAGCAAATATACTGA-CACATAAGTGCATCATC-GTTA
* *
92081767 AACCAAAGCAAATATACTGGCACATAAGTGCATTATCGATTA
1 AACCAAAGCAAATATACTGACACATAAGTGCATCATCG-TTA
92081809 AACC
1 AACC
92081813 GAAGTATAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.03
42 71 0.97
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (41 bp):
AACCAAAGCAAATATACTGACACATAAGTGCATCATCGTTA
Found at i:92081811 original size:84 final size:84
Alignment explanation
Indices: 92081641--92081818 Score: 214
Period size: 84 Copynumber: 2.1 Consensus size: 84
92081631 TCATCTGACG
* * * * *
92081641 AACCGAAGCAAATGTACCGGTACATAAGTGCATAACCGAATGAACCAAAGCAAATATATTGACAC
1 AACCGAAGTAAATATACCAGTACATAAGTGCATAACCGAATAAACCAAAGCAAATATACTGACAC
*
92081706 ATAAGTGTATCATCAGCTA
66 ATAAGTGCATCATCAGCTA
* * * ** *
92081725 AACCGAAGTAAATATACTAGTACATAAGTGCATCATCGGTTAAACCAAAGCAAATATACTGGCAC
1 AACCGAAGTAAATATACCAGTACATAAGTGCATAACCGAATAAACCAAAGCAAATATACTGACAC
* *
92081790 ATAAGTGCATTATC-GATTA
66 ATAAGTGCATCATCAG-CTA
92081809 AACCGAAGTA
1 AACCGAAGTA
92081819 TAAACCCATA
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
83 1 0.01
84 78 0.99
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (84 bp):
AACCGAAGTAAATATACCAGTACATAAGTGCATAACCGAATAAACCAAAGCAAATATACTGACAC
ATAAGTGCATCATCAGCTA
Found at i:92083844 original size:21 final size:21
Alignment explanation
Indices: 92083801--92083840 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
92083791 ATAATATCAA
92083801 ATAAATCTGAATTTTCATTAT
1 ATAAATCTGAATTTTCATTAT
92083822 ATAAA-CTGAATTTTCATTA
1 ATAAATCTGAATTTTCATTA
92083841 ATATCCTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (21 bp):
ATAAATCTGAATTTTCATTAT
Found at i:92086259 original size:22 final size:22
Alignment explanation
Indices: 92086232--92086286 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
92086222 TTAAATATAC
92086232 TAAATGTCTGGTGGGTAAAGAT
1 TAAATGTCTGGTGGGTAAAGAT
92086254 TAAATGTCTGGTGGGTAAAGAT
1 TAAATGTCTGGTGGGTAAAGAT
92086276 TAAATGTCTGG
1 TAAATGTCTGG
92086287 CTTCATTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (22 bp):
TAAATGTCTGGTGGGTAAAGAT
Found at i:92095967 original size:25 final size:25
Alignment explanation
Indices: 92095933--92095982 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
92095923 TTCCAAAGAC
92095933 CATATGCATTTAGATTTAAACTTTA
1 CATATGCATTTAGATTTAAACTTTA
*
92095958 CATATGCATTTAGATTTAAATTTTA
1 CATATGCATTTAGATTTAAACTTTA
92095983 ACTTATAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.46
Consensus pattern (25 bp):
CATATGCATTTAGATTTAAACTTTA
Found at i:92104480 original size:22 final size:22
Alignment explanation
Indices: 92104455--92104505 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
92104445 TGTTGTTTTA
92104455 AATTTTTATAAAATTACATATT
1 AATTTTTATAAAATTACATATT
* * ** *
92104477 AATTATAATAAAATTGTATTTT
1 AATTTTTATAAAATTACATATT
92104499 AATTTTT
1 AATTTTT
92104506 CAATAATTTA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
AATTTTTATAAAATTACATATT
Found at i:92107253 original size:15 final size:15
Alignment explanation
Indices: 92107233--92107264 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
92107223 GACATGAATG
*
92107233 ACAACAAAAATATTA
1 ACAACAAAAACATTA
92107248 ACAACAAAAACATTA
1 ACAACAAAAACATTA
92107263 AC
1 AC
92107265 GCGTATTCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.19, G:0.00, T:0.16
Consensus pattern (15 bp):
ACAACAAAAACATTA
Found at i:92111842 original size:12 final size:12
Alignment explanation
Indices: 92111825--92111896 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 12
92111815 AAATATACTA
92111825 TTTTTATATTAT
1 TTTTTATATTAT
92111837 TTTTTATATTAT
1 TTTTTATATTAT
* * *
92111849 TTTAGTGTATAAT
1 TTT-TTATATTAT
* *
92111862 TTTTCAAATGTAT
1 TTTTTATAT-TAT
* *
92111875 TATTT-TAGTAT
1 TTTTTATATTAT
92111886 TTTTTATATTA
1 TTTTTATATTA
92111897 ATTTAGTAAA
Statistics
Matches: 43, Mismatches: 14, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
11 7 0.16
12 22 0.51
13 14 0.33
ACGTcount: A:0.28, C:0.01, G:0.06, T:0.65
Consensus pattern (12 bp):
TTTTTATATTAT
Found at i:92111852 original size:10 final size:11
Alignment explanation
Indices: 92111818--92111851 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
92111808 TTTTTTAAAA
*
92111818 TATACTATTTT
1 TATATTATTTT
92111829 TATATTATTTTT
1 TATATTA-TTTT
92111841 TATATTATTTT
1 TATATTATTTT
92111852 AGTGTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (11 bp):
TATATTATTTT
Found at i:92112031 original size:150 final size:150
Alignment explanation
Indices: 92111784--92112094 Score: 491
Period size: 150 Copynumber: 2.1 Consensus size: 150
92111774 TATATTTTGG
*
92111784 TATTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTTATATTATTTTTTATATTAT
1 TATTTATTTTATTTTCGGATTTTATTTATTAAAATATACTATTTTTATATTATTTTTTATATTAT
* * *
92111849 TTTAGTGTATAATTTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTCT
66 TTTAGTATATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTAT
92111914 GATTTTGG-CCATTTTTTAT
131 GATTTTGGCCCATTTTTTAT
* *
92111933 TATTTATTTTATTTTTGGATTTTATTTATTAAAATATACTATTTTCGTATTTTA-TTTTTATATT
1 TATTTATTTTATTTTCGGATTTTATTTATTAAAATATACTATTTT--TATATTATTTTTTATATT
*
92111997 ATTTTAGTATATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACT
64 ATTTTAGTATATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACT
* * *
92112062 ATGGTTTTGGCCCTTTTTTTCT
129 ATGATTTTGGCCCATTTTTTAT
92112084 TATTTTATTTT
1 TA-TTTATTTT
92112095 TTAAAATAAA
Statistics
Matches: 148, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
149 43 0.29
150 80 0.54
151 17 0.11
152 8 0.05
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (150 bp):
TATTTATTTTATTTTCGGATTTTATTTATTAAAATATACTATTTTTATATTATTTTTTATATTAT
TTTAGTATATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTAT
GATTTTGGCCCATTTTTTAT
Found at i:92112491 original size:72 final size:75
Alignment explanation
Indices: 92112410--92112566 Score: 239
Period size: 79 Copynumber: 2.1 Consensus size: 75
92112400 TAGATAACAT
92112410 ACATAGGCTTTTTTACGTC-AA-TAAAAATTAAAAATAAATTATGAATATATAT-AAAAAATAAA
1 ACATAGGCTTTTTTACGTCAAATTAAAAATTAAAAATAAATTATGAATATATATAAAAAAATAAA
92112472 ATAAATACAA
66 ATAAATACAA
*
92112482 ACATAGGCTTTTTTACTTCAATAAAAATTAAAAATTAAAAATAAATTATGAATATATATAAAAAA
1 ACATAGGCTTTTTTACGTC-----AAATTAAAAATTAAAAATAAATTATGAATATATATAAAAAA
92112547 ATAAAATAAATACAA
61 ATAAAATAAATACAA
92112562 ACATA
1 ACATA
92112567 CCTTAATATC
Statistics
Matches: 76, Mismatches: 1, Indels: 8
0.89 0.01 0.09
Matches are distributed among these distances:
72 18 0.24
78 2 0.03
79 31 0.41
80 25 0.33
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.31
Consensus pattern (75 bp):
ACATAGGCTTTTTTACGTCAAATTAAAAATTAAAAATAAATTATGAATATATATAAAAAAATAAA
ATAAATACAA
Found at i:92113099 original size:34 final size:34
Alignment explanation
Indices: 92113056--92113120 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
92113046 GCCCTCGACT
* *
92113056 CATTATTTTATTATTTTTTTCACTGTTTTTGACC
1 CATTATTTTATAATTTTTTTCACTGTGTTTGACC
92113090 CATTATTTTATAATTTTTTTCACTGTGTTTG
1 CATTATTTTATAATTTTTTTCACTGTGTTTG
92113121 TCAGAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.18, C:0.12, G:0.08, T:0.62
Consensus pattern (34 bp):
CATTATTTTATAATTTTTTTCACTGTGTTTGACC
Found at i:92114415 original size:38 final size:38
Alignment explanation
Indices: 92114364--92114436 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
92114354 GCAGCCTTAG
92114364 GCAATTTTTTGGGTTCAAATCCTACCTAAATCAACGTT
1 GCAATTTTTTGGGTTCAAATCCTACCTAAATCAACGTT
92114402 GCAATTTTTTGGGTTCAAATCCTACCTAAATCAAC
1 GCAATTTTTTGGGTTCAAATCCTACCTAAATCAAC
92114437 TTACTCTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (38 bp):
GCAATTTTTTGGGTTCAAATCCTACCTAAATCAACGTT
Found at i:92115181 original size:35 final size:37
Alignment explanation
Indices: 92115135--92115204 Score: 108
Period size: 35 Copynumber: 1.9 Consensus size: 37
92115125 ATAATCTTCA
92115135 ATGATATGCAATATTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATATTAGATATGATAGCAATCTTAGAT
*
92115171 ATGAT-TGCAATCTTAGATATGATATGCAATCTTA
1 ATGATATGCAATATTAGATATGATA-GCAATCTTA
92115205 AAAGATATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
35 18 0.58
36 5 0.16
37 8 0.26
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (37 bp):
ATGATATGCAATATTAGATATGATAGCAATCTTAGAT
Done.