Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 31 of 328
Found at i:9038442 original size:9 final size:9
Alignment explanation
Indices: 9038428--9038470 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
9038418 ATTATTATTT
9038428 TATTATTGC
1 TATTATTGC
*
9038437 TATTATTTC
1 TATTATTGC
**
9038446 TATTATTAT
1 TATTATTGC
*
9038455 TATTATGGC
1 TATTATTGC
9038464 TATTATT
1 TATTATT
9038471 ATTTCTTTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (9 bp):
TATTATTGC
Found at i:9038458 original size:18 final size:18
Alignment explanation
Indices: 9038418--9038473 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
9038408 ATTCTCATCC
9038418 ATTATTATTT-TATTATT
1 ATTATTATTTCTATTATT
**
9038435 GCTATTATTTCTATTATT
1 ATTATTATTTCTATTATT
**
9038453 ATTATTATGGCTATTATT
1 ATTATTATTTCTATTATT
9038471 ATT
1 ATT
9038474 TCTTTTTGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 8 0.25
18 24 0.75
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (18 bp):
ATTATTATTTCTATTATT
Found at i:9038748 original size:25 final size:26
Alignment explanation
Indices: 9038712--9038760 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
9038702 ATTATTCATT
* *
9038712 TTAAATT-GTTTTCTATATTATTTGA
1 TTAAATTATTTTTATATATTATTTGA
9038737 TTAAATTATTTTTATATATTATTT
1 TTAAATTATTTTTATATATTATTT
9038761 ATATTAAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (26 bp):
TTAAATTATTTTTATATATTATTTGA
Found at i:9040438 original size:19 final size:20
Alignment explanation
Indices: 9040397--9040438 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
9040387 TATCTCTTTT
* * *
9040397 TAAAATAATATTTTTAATTA
1 TAAAATAATAATTTCAATCA
9040417 TAAAA-AATAATTTCAATCA
1 TAAAATAATAATTTCAATCA
9040436 TAA
1 TAA
9040439 TTACTTTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAAATAATAATTTCAATCA
Found at i:9042436 original size:19 final size:19
Alignment explanation
Indices: 9042407--9042469 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
9042397 ACTTTTTTAA
*
9042407 AAAAAATTATATATGTTATG
1 AAAAAA-TATATATATTATG
9042427 AAAAAATATATATATTAT-
1 AAAAAATATATATATTATG
* *
9042445 -AAAAATATAAAAATTATG
1 AAAAAATATATATATTATG
9042463 AAAAAAT
1 AAAAAAT
9042470 GTTTAAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
17 15 0.39
19 17 0.45
20 6 0.16
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAAATATATATATTATG
Found at i:9042448 original size:17 final size:18
Alignment explanation
Indices: 9042408--9042467 Score: 68
Period size: 17 Copynumber: 3.3 Consensus size: 18
9042398 CTTTTTTAAA
*
9042408 AAAAATTATATATGTTATG
1 AAAAA-TATATATATTATG
9042427 AAAAAATATATATATTAT-
1 -AAAAATATATATATTATG
* *
9042445 AAAAATATAAAAATTATG
1 AAAAATATATATATTATG
9042463 AAAAA
1 AAAAA
9042468 ATGTTTAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 15 0.42
18 5 0.14
19 11 0.31
20 5 0.14
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (18 bp):
AAAAATATATATATTATG
Found at i:9042477 original size:20 final size:19
Alignment explanation
Indices: 9042423--9042509 Score: 63
Period size: 20 Copynumber: 4.6 Consensus size: 19
9042413 TTATATATGT
* * *
9042423 TATGAAAAAATATATATAT
1 TATGAAAAAATATTTAAAA
*
9042442 TAT--AAAAATA-TAAAAA
1 TATGAAAAAATATTTAAAA
*
9042458 TTATGAAAAAATGTTTAAAA
1 -TATGAAAAAATATTTAAAA
**
9042478 TATAGAAAATTTATTTAAAA
1 TAT-GAAAAAATATTTAAAA
*
9042498 TATTAAAAAATA
1 TATGAAAAAATA
9042510 GAAAACTGCA
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
16 2 0.04
17 10 0.20
19 18 0.35
20 21 0.41
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
TATGAAAAAATATTTAAAA
Found at i:9042589 original size:10 final size:10
Alignment explanation
Indices: 9042576--9042609 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
9042566 AATAATCCAA
9042576 AAAATTATAT
1 AAAATTATAT
* *
9042586 AAAATTACAA
1 AAAATTATAT
9042596 AAAATTATAT
1 AAAATTATAT
9042606 AAAA
1 AAAA
9042610 CTACAAAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAATTATAT
Found at i:9042598 original size:20 final size:20
Alignment explanation
Indices: 9042573--9042617 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
9042563 CAAAATAATC
*
9042573 CAAAAAATTATATAAAATTA
1 CAAAAAATTATATAAAACTA
9042593 CAAAAAATTATATAAAACTA
1 CAAAAAATTATATAAAACTA
9042613 CAAAA
1 CAAAA
9042618 TATAAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (20 bp):
CAAAAAATTATATAAAACTA
Found at i:9046129 original size:21 final size:20
Alignment explanation
Indices: 9046093--9046134 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
9046083 CTGAATACAA
9046093 GTCTGTTTGTCAGAACATTTT
1 GTCTGTTTGTCAGAAC-TTTT
**
9046114 GTCTGTTTGTGTGAACTTTT
1 GTCTGTTTGTCAGAACTTTT
9046134 G
1 G
9046135 GTTATTGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.14, C:0.12, G:0.24, T:0.50
Consensus pattern (20 bp):
GTCTGTTTGTCAGAACTTTT
Found at i:9053107 original size:18 final size:19
Alignment explanation
Indices: 9053086--9053127 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
9053076 AATTTTGATA
9053086 TTTTAAA-TTATTTTTGT-T
1 TTTTAAATTTA-TTTTGTCT
*
9053104 TTTTATATTTATTTTGTCT
1 TTTTAAATTTATTTTGTCT
9053123 TTTTA
1 TTTTA
9053128 GTGAGAGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTTAAATTTATTTTGTCT
Found at i:9053872 original size:6 final size:6
Alignment explanation
Indices: 9053861--9053888 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
9053851 GTTTATAATT
9053861 TTTAAA TTTAAA TTTAAA TTTAAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTA
9053889 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:9053909 original size:14 final size:14
Alignment explanation
Indices: 9053882--9053916 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
9053872 ATTTAAATTT
9053882 AAATTTATTTTAAAA
1 AAATTTATTTT-AAA
9053897 AAATTTA-TTTAAA
1 AAATTTATTTTAAA
9053910 AAATTTA
1 AAATTTA
9053917 AGTCTATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.50
14 3 0.15
15 7 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AAATTTATTTTAAA
Found at i:9056233 original size:15 final size:15
Alignment explanation
Indices: 9056213--9056243 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9056203 TTGAAATGAG
9056213 TTAAATTCATTCATA
1 TTAAATTCATTCATA
9056228 TTAAATTCATTCATA
1 TTAAATTCATTCATA
9056243 T
1 T
9056244 AGATCCTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (15 bp):
TTAAATTCATTCATA
Found at i:9056559 original size:25 final size:25
Alignment explanation
Indices: 9056497--9056562 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
9056487 GTCATTAGGG
* *
9056497 TTACTGAT-TTCAGCTCTTATGAGC
1 TTACCGATATTCAGCTCGTATGAGC
*
9056521 TTACCGATACTCAGCTCGTATGAGC
1 TTACCGATATTCAGCTCGTATGAGC
9056546 TTACC-ATTATTCAGCTC
1 TTACCGA-TATTCAGCTC
9056563 AGAGGAGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 8 0.22
25 28 0.78
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (25 bp):
TTACCGATATTCAGCTCGTATGAGC
Found at i:9059522 original size:38 final size:38
Alignment explanation
Indices: 9059434--9059571 Score: 134
Period size: 38 Copynumber: 3.6 Consensus size: 38
9059424 CGAGGTATAA
* * * * *
9059434 AACCCGAACATAACACCAGCACGAAGCTTACGGGACTTT
1 AACCCGGATATAATACCAGCATGAAGCCTACGGGA-TTT
* * * * *
9059473 AAACTCAGATATAATACCGGCACT-AGGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCA-TGAAGCCTACGGGATTT
*
9059512 AACCCGGATATAATACCAGTATGAAGCCTACGGGATTT
1 AACCCGGATATAATACCAGCATGAAGCCTACGGGATTT
*
9059550 AACCCGGATATAATTCCAGCAT
1 AACCCGGATATAATACCAGCAT
9059572 ATAGCCTGCG
Statistics
Matches: 78, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
37 1 0.01
38 50 0.64
39 3 0.04
40 24 0.31
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCATGAAGCCTACGGGATTT
Found at i:9061185 original size:17 final size:17
Alignment explanation
Indices: 9061163--9061196 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9061153 TAGGGGAAAG
9061163 TCTAGAACTTAATTATA
1 TCTAGAACTTAATTATA
*
9061180 TCTAGAAGTTAATTATA
1 TCTAGAACTTAATTATA
9061197 AATCATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (17 bp):
TCTAGAACTTAATTATA
Found at i:9063407 original size:18 final size:18
Alignment explanation
Indices: 9063375--9063435 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
9063365 GCTTCAAAGT
* *
9063375 TTAAATTTTA-AAAAAAA
1 TTAAAATTTATAAAAATA
*
9063392 TTAAAATTTTTTAAAACATTA
1 TTAAAA-TTTATAAAA-A-TA
9063413 TTAAAATTTATAAAAATA
1 TTAAAATTTATAAAAATA
9063431 TTAAA
1 TTAAA
9063436 TAAATTTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
17 5 0.14
18 10 0.28
19 5 0.14
20 9 0.25
21 7 0.19
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TTAAAATTTATAAAAATA
Found at i:9063428 original size:21 final size:21
Alignment explanation
Indices: 9063391--9063433 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9063381 TTTAAAAAAA
* *
9063391 ATTAAAATTTTTTAAAACATT
1 ATTAAAATTTATAAAAACATT
*
9063412 ATTAAAATTTATAAAAATATT
1 ATTAAAATTTATAAAAACATT
9063433 A
1 A
9063434 AATAAATTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTAAAATTTATAAAAACATT
Found at i:9063457 original size:9 final size:9
Alignment explanation
Indices: 9063415--9063457 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
9063405 AAACATTATT
9063415 AAAATTTATA
1 AAAATTTA-A
9063425 AAAATATTAA
1 AAAAT-TTAA
*
9063435 ATAAATTTCA
1 A-AAATTTAA
9063445 AAAATTTAA
1 AAAATTTAA
9063454 AAAA
1 AAAA
9063458 AAAAACCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 11 0.38
10 11 0.38
11 7 0.24
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATTTAA
Found at i:9063854 original size:2 final size:2
Alignment explanation
Indices: 9063849--9063879 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9063839 AGTTTTTTTA
9063849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9063880 GAGAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9063884 original size:2 final size:2
Alignment explanation
Indices: 9063879--9063907 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9063869 ATATATATAT
9063879 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
9063908 AGTATGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9066251 original size:87 final size:87
Alignment explanation
Indices: 9066096--9066272 Score: 255
Period size: 87 Copynumber: 2.0 Consensus size: 87
9066086 ATAATTATAG
* * * *
9066096 TACTATCCATATTAAGCACCACCCTTTTTAGCCCTAGATTCCAAGTTACATGCAGTTCTTCAAGA
1 TACTATCCATATTAAGCACCACCCTTTTTAGCACTAGATTCCAAGCTACATGCAGTTCCTCAAAA
9066161 TCACCCAAAAGATGGTATTGAA
66 TCACCCAAAAGATGGTATTGAA
* * * * *
9066183 TACTATCCATGTTAAGCACCATCCTTTTTTGCACTAGATTCGAAGCTACGTGCAGTTCCTCAAAA
1 TACTATCCATATTAAGCACCACCCTTTTTAGCACTAGATTCCAAGCTACATGCAGTTCCTCAAAA
* *
9066248 TCACCTAAAATATGGTATTGAA
66 TCACCCAAAAGATGGTATTGAA
9066270 TAC
1 TAC
9066273 AGAACAGCAC
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (87 bp):
TACTATCCATATTAAGCACCACCCTTTTTAGCACTAGATTCCAAGCTACATGCAGTTCCTCAAAA
TCACCCAAAAGATGGTATTGAA
Found at i:9078750 original size:50 final size:50
Alignment explanation
Indices: 9078675--9078851 Score: 223
Period size: 50 Copynumber: 3.5 Consensus size: 50
9078665 CCATGGAAAC
*
9078675 AAGTGATAAGTGATAGA-TTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATA-ACTTCAGCTACACTTATCTGATCAAGGACAAATGA
* * *
9078725 AAGTGATAAGTAATAACTTCAGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAACTTCAGCTACACTTATCTGATCAAGGACAAATGA
* *
9078775 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAACTTCAGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
9078825 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAACTTCAGCTAC
9078852 CTGATCCGTG
Statistics
Matches: 111, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
49 1 0.01
50 86 0.77
51 24 0.22
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAACTTCAGCTACACTTATCTGATCAAGGACAAATGA
Found at i:9079037 original size:31 final size:31
Alignment explanation
Indices: 9078829--9079030 Score: 314
Period size: 31 Copynumber: 6.5 Consensus size: 31
9078819 AAATGACAAC
*
9078829 TGAAAAGTGGTAGCTTCAGCTACCTGATCCG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
9078860 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
9078891 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
9078922 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
9078953 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
9078984 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
9079015 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
9079031 TGGCTACAAG
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 155 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:9079048 original size:7 final size:7
Alignment explanation
Indices: 9079036--9079064 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
9079026 AGCTTTGGCT
9079036 ACAAGTG
1 ACAAGTG
9079043 ACAAGTG
1 ACAAGTG
9079050 ACAAGTG
1 ACAAGTG
9079057 ACAAGTG
1 ACAAGTG
9079064 A
1 A
9079065 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:9079155 original size:47 final size:48
Alignment explanation
Indices: 9079068--9079193 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 48
9079058 CAAGTGATTT
* * *
9079068 CTGTATAAGACCATATCTGGGATATGGTATCGGTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
9079115 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
9079163 C-GTGTAAGACCATAGCTGGGCTATGGCATCA
1 CTGTATAAGACCATATCTGGGATATGGCATCA
9079194 TTATGTAAAG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 65 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (48 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:9080967 original size:28 final size:28
Alignment explanation
Indices: 9080927--9080984 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
9080917 AAGAGAGACA
*
9080927 GAAGGGCTCTGTTACTAGTACGAGGCAG
1 GAAGCGCTCTGTTACTAGTACGAGGCAG
*
9080955 GAAGCGCTCTGTTACTAGTACGGGGCAG
1 GAAGCGCTCTGTTACTAGTACGAGGCAG
9080983 GA
1 GA
9080985 TCCTATGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (28 bp):
GAAGCGCTCTGTTACTAGTACGAGGCAG
Found at i:9082441 original size:22 final size:22
Alignment explanation
Indices: 9082395--9082441 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
9082385 TATTAGATAT
**
9082395 TAAATAGATATTTATTATTTTA
1 TAAATAGATATTTATTATTAAA
9082417 TAAA-AGATATTTATTAATTAAA
1 TAAATAGATATTTATT-ATTAAA
9082439 TAA
1 TAA
9082442 TTATATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TAAATAGATATTTATTATTAAA
Found at i:9084553 original size:23 final size:23
Alignment explanation
Indices: 9084519--9084587 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
9084509 CCCGTTATAT
*
9084519 GGCTCTTCGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
9084542 GGCTCTTTGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
** *
9084565 GTGCTCGCT-TGAACTTCCCGATA
1 G-GCTCTTTGTGAGCTTCCCGATA
9084588 TATGGCTATG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 36 0.88
24 5 0.12
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (23 bp):
GGCTCTTTGTGAGCTTCCCGATA
Found at i:9085120 original size:47 final size:46
Alignment explanation
Indices: 9085005--9085170 Score: 242
Period size: 46 Copynumber: 3.6 Consensus size: 46
9084995 TATCTGATAT
* * * *
9085005 GAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT
1 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
9085051 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACGAG
1 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AG
*
9085098 GAAATGAATAAGACCATGGTTGAAAGAAACCATGGCAACATGACAG
1 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
* * *
9085144 AAAATGAGTAAGACCATAGTTGAAAGA
1 GAAATGAATAAGACCATGGTTGAAAGA
9085171 CACTATGACA
Statistics
Matches: 110, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
46 67 0.61
47 43 0.39
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (46 bp):
GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
Found at i:9088271 original size:28 final size:28
Alignment explanation
Indices: 9088240--9088318 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
9088230 GAATCATTCG
* **
9088240 ATATTTTGCACACTAAGTGTTATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
9088268 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
9088296 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
9088319 ATTTGATTGC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:9095719 original size:20 final size:19
Alignment explanation
Indices: 9095696--9095742 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
9095686 ATATATAAAC
*
9095696 ATTTTTAATAT-ATTTTTA
1 ATTTTTAATATAATTTTAA
*
9095714 ATATTTTATATTTAATTTTAA
1 AT-TTTTA-ATATAATTTTAA
9095735 ATTTTTAA
1 ATTTTTAA
9095743 AATTTGTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 6 0.25
20 8 0.33
21 8 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTTTAATATAATTTTAA
Found at i:9096409 original size:30 final size:30
Alignment explanation
Indices: 9096373--9096435 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
9096363 ACTTAACAAG
9096373 CAAATGT-TTCTAAAATAATAACAAAA-TTAA
1 CAAATGTCTT-TAAAATAATAA-AAAAGTTAA
9096403 CAAATGTCTTTAAAATAATAAAAAAGTTAA
1 CAAATGTCTTTAAAATAATAAAAAAGTTAA
9096433 CAA
1 CAA
9096436 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 4 0.13
30 25 0.81
31 2 0.06
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.29
Consensus pattern (30 bp):
CAAATGTCTTTAAAATAATAAAAAAGTTAA
Found at i:9096490 original size:22 final size:22
Alignment explanation
Indices: 9096464--9096512 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
9096454 ATATTCAAAT
9096464 AATAACAACAAAATAGTAGCAA
1 AATAACAACAAAATAGTAGCAA
* * **
9096486 CATAATAGTAAAATAGTAGCAA
1 AATAACAACAAAATAGTAGCAA
9096508 AATAA
1 AATAA
9096513 GAAGAAAACA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.18
Consensus pattern (22 bp):
AATAACAACAAAATAGTAGCAA
Found at i:9096511 original size:11 final size:11
Alignment explanation
Indices: 9096472--9096511 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
9096462 ATAATAACAA
9096472 CAAAATAGTAG
1 CAAAATAGTAG
* *
9096483 CAACATAATAG
1 CAAAATAGTAG
*
9096494 TAAAATAGTAG
1 CAAAATAGTAG
9096505 CAAAATA
1 CAAAATA
9096512 AGAAGAAAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:9096520 original size:22 final size:21
Alignment explanation
Indices: 9096464--9096520 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
9096454 ATATTCAAAT
*
9096464 AATAACAACAAAATAGTAGCAA
1 AATAA-AAGAAAATAGTAGCAA
* *
9096486 CATAATAGTAAAATAGTAGCAA
1 AATAAAAG-AAAATAGTAGCAA
9096508 AATAAGAAGAAAA
1 AATAA-AAGAAAA
9096521 CAATAAGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 25 0.89
23 2 0.07
ACGTcount: A:0.63, C:0.09, G:0.12, T:0.16
Consensus pattern (21 bp):
AATAAAAGAAAATAGTAGCAA
Found at i:9104578 original size:41 final size:41
Alignment explanation
Indices: 9104517--9104719 Score: 237
Period size: 41 Copynumber: 5.0 Consensus size: 41
9104507 TTGTAAAACA
* ** * *
9104517 CAGATCAATAGCGGCATTTTTGGTAAAACGCCACTAAAA-A
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
**
9104557 CAGAGCAATAGCGGCGCTTTTTATTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGC-TTTTGGTAAAACGCCGCTAAAAGT
* **
9104599 CGGAGCAATAGCGGCGCTTCCGGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
* * **
9104640 CGGAGTAATAGCGGCGCTTTCAGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
* * *
9104681 CAGAGCATTAGCAGCGCTTTTGATAAAACGCCGCTAAAA
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
9104720 CCCTAAACCC
Statistics
Matches: 139, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 14 0.10
41 109 0.78
42 16 0.12
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (41 bp):
CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
Found at i:9104784 original size:37 final size:38
Alignment explanation
Indices: 9104720--9104795 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
9104710 GCCGCTAAAA
* * *
9104720 CCCTAAACCCTAAAAAAATCATGAACCCTAATCTATAAC
1 CCCTAAACCCT-AAAAAACCATAAACCCTAAACTATAAC
*
9104759 CCCTAAACCCT-AAAAACCTTAAACCCTAAACTATAAC
1 CCCTAAACCCTAAAAAACCATAAACCCTAAACTATAAC
9104796 TTCTAAAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 22 0.67
39 11 0.33
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.20
Consensus pattern (38 bp):
CCCTAAACCCTAAAAAACCATAAACCCTAAACTATAAC
Found at i:9104939 original size:7 final size:7
Alignment explanation
Indices: 9104927--9104990 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
9104917 TTTATTTTTT
*
9104927 GGTTTAC
1 GGTTTAA
9104934 GGTTTAA
1 GGTTTAA
**
9104941 TATTTAA
1 GGTTTAA
9104948 GGTTTAA
1 GGTTTAA
* *
9104955 GGTCTAT
1 GGTTTAA
*
9104962 GGTTTAG
1 GGTTTAA
*
9104969 GGTTTTAT
1 GG-TTTAA
9104977 GGTTTAA
1 GGTTTAA
9104984 GGTTTAA
1 GGTTTAA
9104991 TGGCCATGGG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:9104979 original size:15 final size:15
Alignment explanation
Indices: 9104943--9104993 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
9104933 CGGTTTAATA
*
9104943 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
9104957 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
9104972 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
9104987 TTAATGG
1 TTTATGG
9104994 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.22, C:0.02, G:0.29, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:9105605 original size:8 final size:8
Alignment explanation
Indices: 9105594--9105662 Score: 81
Period size: 8 Copynumber: 9.0 Consensus size: 8
9105584 ACTCAAAAAA
9105594 TAAAAATT
1 TAAAAATT
9105602 TAAAAATT
1 TAAAAATT
9105610 T-AAAATT
1 TAAAAATT
9105617 T-AAAATT
1 TAAAAATT
9105624 TAAAAA-T
1 TAAAAATT
*
9105631 AAAAAATT
1 TAAAAATT
* *
9105639 AAAAAACT
1 TAAAAATT
*
9105647 TAAAAACT
1 TAAAAATT
9105655 TAAAAATT
1 TAAAAATT
9105663 AATATTTTAG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
7 20 0.36
8 35 0.64
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (8 bp):
TAAAAATT
Found at i:9105606 original size:14 final size:14
Alignment explanation
Indices: 9105602--9105643 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
9105592 AATAAAAATT
*
9105602 TAAAAATTTAAAAT
1 TAAAAATTTAAAAA
*
9105616 TTAAAATTTAAAAA
1 TAAAAATTTAAAAA
*
9105630 TAAAAAATTAAAAA
1 TAAAAATTTAAAAA
9105644 ACTTAAAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAAATTTAAAAA
Found at i:9105606 original size:15 final size:15
Alignment explanation
Indices: 9105594--9105664 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
9105584 ACTCAAAAAA
9105594 TAAAAATTTAAAAATT
1 TAAAAA-TTAAAAATT
*
9105610 T-AAAATTTAAAATT
1 TAAAAATTAAAAATT
*
9105624 TAAAAATAAAAAATT
1 TAAAAATTAAAAATT
* *
9105639 AAAAAACTTAAAAACT
1 TAAAAA-TTAAAAATT
9105655 TAAAAATTAA
1 TAAAAATTAA
9105665 TATTTTAGTC
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
14 9 0.20
15 24 0.52
16 13 0.28
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAAAATTAAAAATT
Found at i:9105651 original size:7 final size:7
Alignment explanation
Indices: 9105588--9105664 Score: 73
Period size: 8 Copynumber: 10.3 Consensus size: 7
9105578 AAATAAACTC
*
9105588 AAAAAAT
1 AAAAATT
9105595 AAAAATTT
1 AAAAA-TT
9105603 AAAAATTT
1 AAAAA-TT
*
9105611 AAAATTT
1 AAAAATT
*
9105618 AAAATTT
1 AAAAATT
*
9105625 AAAAATA
1 AAAAATT
9105632 AAAAATT
1 AAAAATT
9105639 AAAAAACTT
1 -AAAAA-TT
9105648 AAAAACTT
1 AAAAA-TT
9105656 AAAAATT
1 AAAAATT
9105663 AA
1 AA
9105665 TATTTTAGTC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
7 29 0.47
8 31 0.50
9 2 0.03
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:9118837 original size:17 final size:18
Alignment explanation
Indices: 9118817--9118854 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
9118807 CATTGATATC
9118817 TTTA-TATTTAATTTAAT
1 TTTATTATTTAATTTAAT
* *
9118834 TTTATTATTTATTTTAGT
1 TTTATTATTTAATTTAAT
9118852 TTT
1 TTT
9118855 GATTCTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTATTATTTAATTTAAT
Found at i:9118873 original size:19 final size:21
Alignment explanation
Indices: 9118845--9118892 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
9118835 TTATTATTTA
9118845 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
9118865 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
9118885 TTTTAGTT
1 TTTTAGTT
9118893 AAAAATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:9118991 original size:27 final size:28
Alignment explanation
Indices: 9118956--9119009 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
9118946 TATTTTGATA
*
9118956 ATGAATTTTA-AATTTTTTATATTTTTC
1 ATGAATTTTATAATATTTTATATTTTTC
* *
9118983 ATGACTTTTATAATATTTTATTTTTTT
1 ATGAATTTTATAATATTTTATATTTTT
9119010 TAAAATTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (28 bp):
ATGAATTTTATAATATTTTATATTTTTC
Found at i:9119083 original size:43 final size:43
Alignment explanation
Indices: 9119017--9119162 Score: 222
Period size: 43 Copynumber: 3.4 Consensus size: 43
9119007 TTTTAAAATT
* *
9119017 TCATTACCTTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
*
9119060 CCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
* *
9119103 TCATGA-CTTGTAGCGGCATTTGTGGGAAAAGCGCCACTAAAGG
1 TCATGACCTT-TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
*
9119146 TTATGACCTTTAGCGGC
1 TCATGACCTTTAGCGGC
9119163 ATTTTTTTAA
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
42 3 0.03
43 88 0.94
44 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (43 bp):
TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
Found at i:9120439 original size:42 final size:42
Alignment explanation
Indices: 9120375--9120501 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
9120365 CTTCGTTTTC
** ** * *
9120375 TCGATGCCATAGTTCAATTATGGTCTTACATATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
9120418 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
9120459 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
9120500 TC
1 TC
9120502 TCACTGATGC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.14
42 62 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:9120563 original size:47 final size:46
Alignment explanation
Indices: 9120460--9120583 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 46
9120450 ATTCATATAT
* * * * *
9120460 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
9120506 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
9120553 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
9120584 GAAATCACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:9120643 original size:31 final size:31
Alignment explanation
Indices: 9120608--9120725 Score: 166
Period size: 31 Copynumber: 3.8 Consensus size: 31
9120598 CTTGTCTCTT
*
9120608 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
9120639 GTAGCCGGTA-CTACCGCTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
* *
9120670 GTAGCCGGAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
9120701 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
9120726 TGTCATTTGT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 2 0.03
31 73 0.95
32 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:9122312 original size:10 final size:10
Alignment explanation
Indices: 9122297--9122326 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
9122287 GCTGATGAAT
9122297 ATGAAGAGAA
1 ATGAAGAGAA
9122307 ATGAAGAGAA
1 ATGAAGAGAA
9122317 ATGAAGAGAA
1 ATGAAGAGAA
9122327 TTCTAGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.30, T:0.10
Consensus pattern (10 bp):
ATGAAGAGAA
Found at i:9124630 original size:20 final size:21
Alignment explanation
Indices: 9124597--9124635 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
9124587 AAAAATTCAA
* *
9124597 AATATTTAAGAAAT-CTAAAG
1 AATATATAAAAAATGCTAAAG
9124617 AATATATAAAAAATGCTAA
1 AATATATAAAAAATGCTAA
9124636 CTTATAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (21 bp):
AATATATAAAAAATGCTAAAG
Found at i:9130266 original size:164 final size:164
Alignment explanation
Indices: 9129990--9130318 Score: 534
Period size: 164 Copynumber: 2.0 Consensus size: 164
9129980 ACACGGATAC
* *
9129990 TTCACGAAAAGTAGAGTCAGAGCAACATAGGTAGCAGCTGATTGAACTGTTCAATCATGTCAAAG
1 TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG
* * *
9130055 TTTTAGATGATGAATAGCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATTTTTTGTTGGCT
66 TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
**
9130120 TTA-CTTCGTATGGTAAAAGATTTTTTCTCGATTG
131 TTACCTT-GTATGGTAAAAGATTTTGGCTCGATTG
* * *
9130154 TTCAAGAAAAGTAGAGTCGGAGCAACATTGGTAGCACCTGATTGAACTGTTCAGTCATGTCAAAG
1 TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG
* *
9130219 TTTTAGATGATGAATACCCTTTGGAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
66 TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
9130284 TTACCTTGTATGGTAAAAGATTTTGGCTCGATTG
131 TTACCTTGTATGGTAAAAGATTTTGGCTCGATTG
9130318 T
1 T
9130319 AATCTTCATA
Statistics
Matches: 152, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
164 149 0.98
165 3 0.02
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (164 bp):
TTCAAGAAAAGTAGAGTCAGAGCAACATAGGTAGCACCTGATTGAACTGTTCAATCATGTCAAAG
TTTTAGATGATGAATACCCGTTGAAAGCAATTAAATCTGTGTCCAACAATTATCTTTTATTGGCT
TTACCTTGTATGGTAAAAGATTTTGGCTCGATTG
Found at i:9133682 original size:15 final size:15
Alignment explanation
Indices: 9133664--9133696 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
9133654 TATGATGTTT
9133664 AAATTTATTTCATTA
1 AAATTTATTTCATTA
9133679 AAATTTATTTCATTA
1 AAATTTATTTCATTA
9133694 AAA
1 AAA
9133697 AAATACTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATTTATTTCATTA
Found at i:9137926 original size:32 final size:31
Alignment explanation
Indices: 9137866--9137960 Score: 129
Period size: 31 Copynumber: 3.0 Consensus size: 31
9137856 AAATAAAAGG
*
9137866 GCTGCATAACAAAGGAAAAAAAAA-AGTTAAT
1 GCTGCATAAGAAA-GAAAAAAAAATAGTTAAT
*
9137897 GCTGCCTAAGAAAGAAAAAAAAAATAGTTAAT
1 GCTGCATAAGAAAG-AAAAAAAAATAGTTAAT
**
9137929 GCTGTGTAAGAAAGAAAAAAAAATAGTTAAT
1 GCTGCATAAGAAAGAAAAAAAAATAGTTAAT
9137960 G
1 G
9137961 TATTGTCTTA
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.02
31 38 0.66
32 19 0.33
ACGTcount: A:0.56, C:0.07, G:0.18, T:0.19
Consensus pattern (31 bp):
GCTGCATAAGAAAGAAAAAAAAATAGTTAAT
Found at i:9138637 original size:13 final size:12
Alignment explanation
Indices: 9138609--9138658 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
9138599 TTTATCAGTG
9138609 AAAAATATACAT
1 AAAAATATACAT
*
9138621 AAAAATATCCAT
1 AAAAATATACAT
9138633 AAAAA-ATACAT
1 AAAAATATACAT
*
9138644 ATGACAATATACAT
1 A--AAAATATACAT
9138658 A
1 A
9138659 CAATGTTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 6 0.19
12 16 0.50
13 3 0.09
14 7 0.22
ACGTcount: A:0.62, C:0.12, G:0.02, T:0.24
Consensus pattern (12 bp):
AAAAATATACAT
Found at i:9143973 original size:14 final size:14
Alignment explanation
Indices: 9143954--9143986 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9143944 GCATCTCTAT
9143954 TTCTTCTCT-TCTTC
1 TTCTTCT-TATCTTC
9143968 TTCTTCTTATCTTC
1 TTCTTCTTATCTTC
9143982 TTCTT
1 TTCTT
9143987 TTACTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (14 bp):
TTCTTCTTATCTTC
Found at i:9148094 original size:50 final size:50
Alignment explanation
Indices: 9148019--9148158 Score: 244
Period size: 50 Copynumber: 2.8 Consensus size: 50
9148009 CCATGGAAAC
9148019 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
9148069 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
9148119 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA
9148159 TTGCAAATGG
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:9148388 original size:31 final size:31
Alignment explanation
Indices: 9148180--9148381 Score: 305
Period size: 31 Copynumber: 6.5 Consensus size: 31
9148170 AAATGACAAC
*
9148180 TGAAAAGTGGTAGCTTCAGCTACCTCATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
9148211 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
9148242 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
9148273 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
9148304 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
9148335 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
9148366 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
9148382 TGGCTACAAG
Statistics
Matches: 156, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 156 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:9148399 original size:7 final size:7
Alignment explanation
Indices: 9148387--9148415 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
9148377 AGCTTTGGCT
9148387 ACAAGTG
1 ACAAGTG
9148394 ACAAGTG
1 ACAAGTG
9148401 ACAAGTG
1 ACAAGTG
9148408 ACAAGTG
1 ACAAGTG
9148415 A
1 A
9148416 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:9148506 original size:47 final size:49
Alignment explanation
Indices: 9148419--9148542 Score: 143
Period size: 47 Copynumber: 2.6 Consensus size: 49
9148409 CAAGTGATTT
*
9148419 CTGTATAAGACCATATCTGGGATAT-AGCATCGTTGTGATATATG-CTA
1 CTGTATAAGACCATATCTGGGATATGAGCATCGTTGAGATATATGACTA
* *
9148466 CTGTATAAGACCATATCTGGGATATGA-CATCAG-TGAGATATGTGATTA
1 CTGTATAAGACCATATCTGGGATATGAGCATC-GTTGAGATATATGACTA
* * *
9148514 C-GTGTAAGACCATAGCTGGGCTATG-GCAT
1 CTGTATAAGACCATATCTGGGATATGAGCAT
9148543 TATTATGTAA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
47 62 0.93
48 5 0.07
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (49 bp):
CTGTATAAGACCATATCTGGGATATGAGCATCGTTGAGATATATGACTA
Found at i:9152856 original size:14 final size:14
Alignment explanation
Indices: 9152828--9152888 Score: 68
Period size: 14 Copynumber: 4.2 Consensus size: 14
9152818 TAATTATAAA
9152828 TAAATGTTAAAATCT
1 TAAAT-TTAAAATCT
*
9152843 TAAATTTAATATCT
1 TAAATTTAAAATCT
* * *
9152857 TAAACCTTAAATTTT
1 TAAA-TTTAAAATCT
9152872 TAAATTTAAAATCT
1 TAAATTTAAAATCT
9152886 TAA
1 TAA
9152889 GTTGGAGAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
14 22 0.59
15 15 0.41
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (14 bp):
TAAATTTAAAATCT
Found at i:9154069 original size:54 final size:54
Alignment explanation
Indices: 9154003--9154111 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
9153993 TAATCCTCCA
*
9154003 TATTATAGTTTTGTGAGATGGATTATTAACTGCAAATCACCAATTAATCTGACT
1 TATTATAGTTTTGTGAGATGGACTATTAACTGCAAATCACCAATTAATCTGACT
9154057 TATTATAGTTTTGTGAGATGGACTATTAACTGCAAATCACCAATTAATCTGACT
1 TATTATAGTTTTGTGAGATGGACTATTAACTGCAAATCACCAATTAATCTGACT
9154111 T
1 T
9154112 TAAAAAAAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (54 bp):
TATTATAGTTTTGTGAGATGGACTATTAACTGCAAATCACCAATTAATCTGACT
Found at i:9159315 original size:11 final size:11
Alignment explanation
Indices: 9159292--9159338 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
9159282 TATCCCTAAA
9159292 AACC-AAACACC
1 AACCTAAAC-CC
9159303 AACCTAAACCC
1 AACCTAAACCC
**
9159314 AACCTAAACTA
1 AACCTAAACCC
9159325 AACCTAAGACCC
1 AACCTAA-ACCC
9159337 AA
1 AA
9159339 ATCAAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.51, C:0.38, G:0.02, T:0.09
Consensus pattern (11 bp):
AACCTAAACCC
Found at i:9159753 original size:2 final size:2
Alignment explanation
Indices: 9159740--9159770 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
9159730 CTACATATAA
*
9159740 AC AC AG AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
9159771 TATATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.45, G:0.03, T:0.00
Consensus pattern (2 bp):
AC
Found at i:9159775 original size:2 final size:2
Alignment explanation
Indices: 9159770--9159800 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9159760 ACACACACAC
9159770 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9159801 AATACATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9160638 original size:12 final size:12
Alignment explanation
Indices: 9160623--9160649 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9160613 CTATTATATT
9160623 TTATTATTACTA
1 TTATTATTACTA
9160635 TTATTATTACTA
1 TTATTATTACTA
9160647 TTA
1 TTA
9160650 CATTATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:9160817 original size:13 final size:12
Alignment explanation
Indices: 9160794--9160826 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
9160784 TTTATTTATG
9160794 TATTTTTTATTT
1 TATTTTTTATTT
9160806 TATTTCTTTATTT
1 TATTT-TTTATTT
9160819 TATTTTTT
1 TATTTTTT
9160827 GTTATCTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:9161444 original size:127 final size:127
Alignment explanation
Indices: 9161206--9161433 Score: 300
Period size: 127 Copynumber: 1.8 Consensus size: 127
9161196 AGATAAAATT
* * *
9161206 TTCTAAAACAAGGCAATGTTTGATACTTGGAAATTCGGGGAATCGTGCCCTATCATGCTGGGTTT
1 TTCTAAAACAAGGCAATGTCTAATACTTGGAAATTCGGGGAATCGTGCCCTACCATGCTGGGTTT
*** **
9161271 CGATTTCTCGTTTGTCTAAGATAATCAGTTATTCCTTTAGAATTTCATTCATATTCTCTAAA
66 CGATTTCTCGTTAAACTAAGATAATCAGACATTCCTTTAGAATTTCATTCATATTCTCTAAA
** * *
9161333 TTCTAAAACAAGGCAATGTCTAATGTTTGGAAATTCGAGGG-ATCGTGCCCTACCGTGTTGGGTT
1 TTCTAAAACAAGGCAATGTCTAATACTTGGAAATTCG-GGGAATCGTGCCCTACCATGCTGGGTT
* *
9161397 TCGGTTTCTCGTTAAACTAA-ATAATTAGACA-TCCTTT
65 TCGATTTCTCGTTAAACTAAGATAATCAGACATTCCTTT
9161434 TGTAATTTTC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
125 6 0.07
126 8 0.09
127 69 0.80
128 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.37
Consensus pattern (127 bp):
TTCTAAAACAAGGCAATGTCTAATACTTGGAAATTCGGGGAATCGTGCCCTACCATGCTGGGTTT
CGATTTCTCGTTAAACTAAGATAATCAGACATTCCTTTAGAATTTCATTCATATTCTCTAAA
Found at i:9177590 original size:68 final size:68
Alignment explanation
Indices: 9177473--9178219 Score: 1062
Period size: 68 Copynumber: 11.0 Consensus size: 68
9177463 AAAATTACAA
* * *
9177473 ATCTCTTCTCCCTGAAATGGCATTAGAGCGACTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9177538 CGG
66 CGG
* * *
9177541 ATCTTTTCTCCCTGAAATGGCGTTGGAGTGGCTAGAAGCCACAATAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
*
9177606 CAG
66 CGG
* * *
9177609 ATCTCTTCTCCCTGAAATGGCTTTGGAGCGGCTAGAAGCCATAGCAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
*
9177674 TGG
66 CGG
* * * * **
9177677 ATCTCCTCTCCCTAAAATGGCGTTGGAGTGGCTAGAAGCCATAACAGATCTATTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9177742 CGG
66 CGG
* * *
9177745 ATCTTTTCTCCCTAAAATGGTGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9177810 CGG
66 CGG
* * * *
9177813 ATCTCTTCTCCCTGAAATGGCATTGGAACGGTTAGAAGCCACAATAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
*
9177878 CAG
66 CGG
* *
9177881 ATCTTTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGGCACAACAGATCTCCTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9177946 CGG
66 CGG
* * ** *
9177949 ATCTCCTCTTCCTGAAATGGCGTTAAAGCGGCTAGAAGCCACAACAGATCTCTTTGAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9178014 CGG
66 CGG
* * * * *
9178017 ATCTCATCTCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAACAGATCTCCTCGAAGTTTCAT
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
*
9178082 TGG
66 CGG
* * * * ** *
9178085 ATCTCTTCTCCTTGAAATAGCGTTGGAGCGGCTAGAAGCCATAACAAATCTCCTCAAAGTTTCAT
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9178150 CGG
66 CGG
* * *
9178153 ATCTCTTTTCCCTGAAATGGTGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTAAAGTTTCAG
1 ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
9178218 CG
66 CG
9178220 AAGTAAATTG
Statistics
Matches: 600, Mismatches: 79, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
68 600 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (68 bp):
ATCTCTTCTCCCTGAAATGGCGTTGGAGCGGCTAGAAGCCACAACAGATCTCCTTGAAGTTTCAG
CGG
Found at i:9178301 original size:45 final size:45
Alignment explanation
Indices: 9178247--9178492 Score: 135
Period size: 45 Copynumber: 5.4 Consensus size: 45
9178237 AAGTCTCATC
9178247 TCCCTAAAGTTGCAGTGGAGCAGACTGAAGTTAGCGAATCTTATT
1 TCCCTAAAGTTGCAGTGGAGCAGACTGAAGTTAGCGAATCTTATT
* * * * * *
9178292 TCCCTAAAGTTACAGTGGAACAGATTGAAGCTATAAATCACAGATCTTATC
1 TCCCTAAAGTTGCAGTGGAGCAGACTGAAG-T-T--AGC-GA-ATCTTATT
* * * * * * *
9178343 TCTCTGAAGTTGCAGTAGAGCAGA-TCAA---AGCAAACCTTATC
1 TCCCTAAAGTTGCAGTGGAGCAGACTGAAGTTAGCGAATCTTATT
* * * ** * * *
9178384 TCCCTGAAGTTGCTGTGAAGCAGGTTGAAGTCA--TAAGTCTCATT
1 TCCCTAAAGTTGCAGTGGAGCAGACTGAAGTTAGCGAA-TCTTATT
** * * *
9178428 TCCCTAAAGTTGCAGTGGAGTGGACTGAAGATGGAGAATCTTATT
1 TCCCTAAAGTTGCAGTGGAGCAGACTGAAGTTAGCGAATCTTATT
**
9178473 TCTATAAAGTTGCAGTGGAG
1 TCCCTAAAGTTGCAGTGGAG
9178493 TGGAGTAAAG
Statistics
Matches: 149, Mismatches: 39, Indels: 26
0.70 0.18 0.12
Matches are distributed among these distances:
41 26 0.17
42 4 0.03
43 4 0.03
44 27 0.18
45 52 0.35
46 3 0.02
47 1 0.01
49 2 0.01
50 4 0.03
51 26 0.17
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (45 bp):
TCCCTAAAGTTGCAGTGGAGCAGACTGAAGTTAGCGAATCTTATT
Found at i:9179160 original size:5 final size:5
Alignment explanation
Indices: 9179150--9179203 Score: 58
Period size: 5 Copynumber: 11.0 Consensus size: 5
9179140 TAGTTTTGAA
* *
9179150 TCTTT TCTTTT TTTTT TCTTC TCTTT TC-TT TCTTT TCTTT TC-TT TCTTT
1 TCTTT TC-TTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
*
9179199 CCTTT
1 TCTTT
9179204 GTCTACACAC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
4 8 0.20
5 29 0.71
6 4 0.10
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TCTTT
Found at i:9179171 original size:14 final size:14
Alignment explanation
Indices: 9179154--9179197 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
9179144 TTTGAATCTT
*
9179154 TTCTTTTTTTTTTC
1 TTCTTTTTTCTTTC
*
9179168 TTCTCTTTTCTTTC
1 TTCTTTTTTCTTTC
9179182 TT-TTCTTTTCTTTC
1 TTCTT-TTTTCTTTC
9179196 TT
1 TT
9179198 TCCTTTGTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 1 0.04
14 25 0.96
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTCTTTTTTCTTTC
Found at i:9179176 original size:10 final size:9
Alignment explanation
Indices: 9179150--9179203 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
9179140 TAGTTTTGAA
9179150 TCTTTTCTT
1 TCTTTTCTT
9179159 T-TTTT-TT
1 TCTTTTCTT
*
9179166 TCTTCTCTT
1 TCTTTTCTT
9179175 T-TCTTTCTTT
1 TCT-TTTC-TT
9179185 TCTTTTCTT
1 TCTTTTCTT
*
9179194 TCTTTCCTT
1 TCTTTTCTT
9179203 T
1 T
9179204 GTCTACACAC
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
7 3 0.08
8 8 0.22
9 18 0.49
10 7 0.19
11 1 0.03
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (9 bp):
TCTTTTCTT
Found at i:9179198 original size:14 final size:14
Alignment explanation
Indices: 9179159--9179203 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
9179149 ATCTTTTCTT
* *
9179159 TTTTTTTTCTTCTC
1 TTTTCTTTCTTTTC
9179173 TTTTCTTTCTTTTC
1 TTTTCTTTCTTTTC
*
9179187 TTTTCTTTCTTTCC
1 TTTTCTTTCTTTTC
9179201 TTT
1 TTT
9179204 GTCTACACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTCTTTCTTTTC
Found at i:9180065 original size:12 final size:12
Alignment explanation
Indices: 9180050--9180076 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9180040 CTATTATATT
9180050 TTATTATTACTA
1 TTATTATTACTA
9180062 TTATTATTACTA
1 TTATTATTACTA
9180074 TTA
1 TTA
9180077 CATTATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:9180241 original size:13 final size:12
Alignment explanation
Indices: 9180218--9180249 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
9180208 TTTATTTATG
9180218 TATTTTTTATTT
1 TATTTTTTATTT
9180230 TATTTCTTTATTT
1 TATTT-TTTATTT
9180243 TATTTTT
1 TATTTTT
9180250 CGTTATCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:9189105 original size:36 final size:36
Alignment explanation
Indices: 9189065--9189135 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 36
9189055 ATCAATTCAA
9189065 AAATA-GCCAAAGAT-TAAAAATAAAAATAAACCTTGC
1 AAATATGCCAAA-ATAT-AAAATAAAAATAAACCTTGC
* * *
9189101 AAATATGTCAAAATATTAAATAAAATTAAACCTTG
1 AAATATGCCAAAATATAAAATAAAAATAAACCTTG
9189136 GCACACCCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 24 0.80
37 6 0.20
ACGTcount: A:0.56, C:0.11, G:0.07, T:0.25
Consensus pattern (36 bp):
AAATATGCCAAAATATAAAATAAAAATAAACCTTGC
Found at i:9189274 original size:21 final size:21
Alignment explanation
Indices: 9189250--9189293 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
9189240 TTCAAATTGT
* *
9189250 TTTAAATAAAATGACTAAATA
1 TTTAAACAAAAGGACTAAATA
* *
9189271 TTTATACAAAAGGAGTAAATA
1 TTTAAACAAAAGGACTAAATA
9189292 TT
1 TT
9189294 ATTTCAAGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (21 bp):
TTTAAACAAAAGGACTAAATA
Found at i:9198353 original size:32 final size:32
Alignment explanation
Indices: 9198314--9198384 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
9198304 ATTTTAGAGG
* * *
9198314 TTGATTAATACTAATCATTGGAGAAATTAAGA
1 TTGATTAATACAAACCATTGAAGAAATTAAGA
*
9198346 TTGATTAATACAAACCCTTGAAGAAATTAAGA
1 TTGATTAATACAAACCATTGAAGAAATTAAGA
9198378 TTGATTA
1 TTGATTA
9198385 GAAATTTAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (32 bp):
TTGATTAATACAAACCATTGAAGAAATTAAGA
Found at i:9200511 original size:25 final size:23
Alignment explanation
Indices: 9200483--9200543 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 23
9200473 GTGTAAAAAA
9200483 AAAAGTTTGAAATAAATAATATAT
1 AAAA-TTTGAAATAAATAATATAT
*
9200507 GAAAATATT-AAAGTAAATAATGTAT
1 -AAAAT-TTGAAA-TAAATAATATAT
9200532 AAAATTTGAAAT
1 AAAATTTGAAAT
9200544 GAGTGTTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
23 3 0.09
24 12 0.38
25 17 0.53
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (23 bp):
AAAATTTGAAATAAATAATATAT
Found at i:9200709 original size:23 final size:23
Alignment explanation
Indices: 9200643--9200709 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
9200633 TATAAGAAAA
*
9200643 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
9200663 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
9200686 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
9200709 A
1 A
9200710 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:9200716 original size:17 final size:15
Alignment explanation
Indices: 9200676--9200721 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
9200666 ATATAAATAG
*
9200676 AAATAAAAATATAAT
1 AAATAGAAATATAAT
9200691 AAATAGAAATATAAT
1 AAATAGAAATATAAT
9200706 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
9200722 ATAGATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:9200751 original size:46 final size:44
Alignment explanation
Indices: 9200686--9200809 Score: 109
Period size: 43 Copynumber: 2.8 Consensus size: 44
9200676 AAATAAAAAT
9200686 ATAATAAATAG-AAAT-ATAATAATAGTAGAAATATA-AATAGATAA
1 ATAA-AAATAGAAAATAATAATAATAGTAGAAATATACAA-A-ATAA
* *
9200730 A-AAAAATTAGATAAATAATAATAGTATTAG-AATA-ACAAAATAA
1 ATAAAAA-TAGA-AAATAATAATAATAGTAGAAATATACAAAATAA
*
9200773 ATATAAATAGAAACATAATAATAATAGTA-ATAATATA
1 ATAAAAATAGAAA-ATAATAATAATAGTAGA-AATATA
9200810 TTAAATTAGT
Statistics
Matches: 65, Mismatches: 5, Indels: 19
0.73 0.06 0.21
Matches are distributed among these distances:
42 5 0.08
43 27 0.42
44 11 0.17
45 11 0.17
46 11 0.17
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (44 bp):
ATAAAAATAGAAAATAATAATAATAGTAGAAATATACAAAATAA
Found at i:9210288 original size:2 final size:2
Alignment explanation
Indices: 9210281--9210315 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9210271 CTGATAAATC
9210281 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9210316 GATTGGCTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9211406 original size:6 final size:6
Alignment explanation
Indices: 9211397--9211430 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
9211387 CTTATATGTA
9211397 TATATG TATATG TATATG TATATG TATATG TATA
1 TATATG TATATG TATATG TATATG TATATG TATA
9211431 ATTCTGAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:9213656 original size:14 final size:14
Alignment explanation
Indices: 9213637--9213674 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
9213627 ATACACATAA
9213637 TAAGATTTTAACCC
1 TAAGATTTTAACCC
9213651 TAAGATTTTAACCC
1 TAAGATTTTAACCC
*
9213665 TAAGCTTTTA
1 TAAGATTTTA
9213675 TGAATTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (14 bp):
TAAGATTTTAACCC
Found at i:9213727 original size:2 final size:2
Alignment explanation
Indices: 9213720--9213753 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
9213710 TTTCATTTTA
9213720 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9213754 TTATTTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9216017 original size:23 final size:22
Alignment explanation
Indices: 9215954--9216017 Score: 55
Period size: 18 Copynumber: 3.0 Consensus size: 22
9215944 ATATCCATTT
*
9215954 TTTTTAAATTAATAGAAAATAATA
1 TTTTTAAATTAATAG-AAAT-CTA
*
9215978 TTTTAAAATT-AT---AATCTA
1 TTTTTAAATTAATAGAAATCTA
9215996 TTTTTAAATTAATAGAAGATCT
1 TTTTTAAATTAATAGAA-ATCT
9216018 TAAAATTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 11
0.70 0.07 0.24
Matches are distributed among these distances:
18 11 0.34
19 5 0.16
22 1 0.03
23 6 0.19
24 9 0.28
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (22 bp):
TTTTTAAATTAATAGAAATCTA
Found at i:9216994 original size:16 final size:16
Alignment explanation
Indices: 9216973--9217006 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
9216963 CACAAACAAT
9216973 CTTAAAAAATTGTTTA
1 CTTAAAAAATTGTTTA
9216989 CTTAAAAAATTGTTTA
1 CTTAAAAAATTGTTTA
9217005 CT
1 CT
9217007 ATACTTCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (16 bp):
CTTAAAAAATTGTTTA
Found at i:9217687 original size:17 final size:17
Alignment explanation
Indices: 9217667--9217717 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
9217657 TAACCCTTTT
9217667 TATTAATTTTGACATTA
1 TATTAATTTTGACATTA
*
9217684 TATT-GTTTT-AC-TT-
1 TATTAATTTTGACATTA
9217697 TATTAATTTTGACATTA
1 TATTAATTTTGACATTA
9217714 TATT
1 TATT
9217718 GTTTTACTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 4 0.14
14 6 0.21
15 4 0.14
16 6 0.21
17 8 0.29
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (17 bp):
TATTAATTTTGACATTA
Found at i:9217699 original size:30 final size:30
Alignment explanation
Indices: 9217665--9217726 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
9217655 AATAACCCTT
9217665 TTTATTAATTTTGACATTATATTGTTTTAC
1 TTTATTAATTTTGACATTATATTGTTTTAC
9217695 TTTATTAATTTTGACATTATATTGTTTTAC
1 TTTATTAATTTTGACATTATATTGTTTTAC
9217725 TT
1 TT
9217727 ATTGATGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.61
Consensus pattern (30 bp):
TTTATTAATTTTGACATTATATTGTTTTAC
Found at i:9219443 original size:25 final size:25
Alignment explanation
Indices: 9219405--9219452 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
9219395 GTAATAATAG
9219405 AGAATAAACAATATAC-ATGAAAGA
1 AGAATAAACAATATACAATGAAAGA
*
9219429 AGAATACACCAATATACAATGAAA
1 AGAATA-AACAATATACAATGAAA
9219453 CTACATATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 9 0.43
26 6 0.29
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.17
Consensus pattern (25 bp):
AGAATAAACAATATACAATGAAAGA
Found at i:9221564 original size:33 final size:29
Alignment explanation
Indices: 9221488--9221552 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 29
9221478 ATGGTATCAT
* *
9221488 ATTTAAAAATTAAAAAATAATTTTTTTAT
1 ATTTATAAATTAAAAAATAATTTTTTTAA
9221517 ATTTATATAATTAAAAATATTAATTATTTTTAA
1 ATTTATA-AATTAAAAA-A-TAATT-TTTTTAA
9221550 ATT
1 ATT
9221553 ACTTAAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 6 0.20
30 9 0.30
31 1 0.03
32 5 0.17
33 9 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (29 bp):
ATTTATAAATTAAAAAATAATTTTTTTAA
Found at i:9222272 original size:22 final size:22
Alignment explanation
Indices: 9222244--9222291 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
9222234 ATTTTAATTT
9222244 TTAAATATT-TAAAATATTAATA
1 TTAAATATTAT-AAATATTAATA
* *
9222266 TTAAATATTATAATTTTTAATA
1 TTAAATATTATAAATATTAATA
9222288 TTAA
1 TTAA
9222292 TAAACATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTAAATATTATAAATATTAATA
Found at i:9222377 original size:20 final size:21
Alignment explanation
Indices: 9222346--9222384 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
9222336 TATTAATATA
9222346 ATTAATATAATTTACTATTTT
1 ATTAATATAATTTACTATTTT
*
9222367 ATTAA-ATAATTTATTATT
1 ATTAATATAATTTACTATT
9222385 AAAACTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTAATATAATTTACTATTTT
Found at i:9222498 original size:19 final size:19
Alignment explanation
Indices: 9222474--9222522 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
9222464 ATTTATATTA
9222474 ATATTATAATAATAAATAT
1 ATATTATAATAATAAATAT
* *
9222493 ATATTACAATTATAAATAT
1 ATATTATAATAATAAATAT
*
9222512 AT-TAATAATAA
1 ATATTATAATAA
9222523 ATGTTTTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
ATATTATAATAATAAATAT
Found at i:9226067 original size:17 final size:17
Alignment explanation
Indices: 9226040--9226082 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
9226030 TTGATCCATT
*
9226040 TTTTCTATTTTTAATAAA
1 TTTT-TATTTTTAAAAAA
9226058 TTTTTATTTTTTAAAAAA
1 TTTTTA-TTTTTAAAAAA
*
9226076 GTTTTAT
1 TTTTTAT
9226083 AAAATTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (17 bp):
TTTTTATTTTTAAAAAA
Found at i:9226069 original size:19 final size:18
Alignment explanation
Indices: 9226047--9226082 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
9226037 ATTTTTTCTA
* *
9226047 TTTTTAATAAATTTTTAT
1 TTTTTAAAAAAGTTTTAT
9226065 TTTTTAAAAAAGTTTTAT
1 TTTTTAAAAAAGTTTTAT
9226083 AAAATTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTTAAAAAAGTTTTAT
Found at i:9234636 original size:56 final size:58
Alignment explanation
Indices: 9234550--9234683 Score: 173
Period size: 56 Copynumber: 2.3 Consensus size: 58
9234540 TACCGTTTTG
* * **
9234550 ATATATTTGCTAAATTGAGTATGTTCGGTA-TTTTTCTGTATATCTTGGTA-TTTTCA
1 ATATATTTGATATATTGAGTATGTTCGGTAGTTTTTCTGTATATCTTAATATTTTTCA
* * **
9234606 ATATATTTGATATATTGAGTATGTTGGGTATGTTTTTTTGTATATCTTAATATTTTTTG
1 ATATATTTGATATATTGAGTATGTTCGGTA-GTTTTTCTGTATATCTTAATATTTTTCA
9234665 ATATATTTGATATATTGAG
1 ATATATTTGATATATTGAG
9234684 CATTTCTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
56 27 0.40
58 17 0.25
59 23 0.34
ACGTcount: A:0.25, C:0.04, G:0.16, T:0.54
Consensus pattern (58 bp):
ATATATTTGATATATTGAGTATGTTCGGTAGTTTTTCTGTATATCTTAATATTTTTCA
Found at i:9235382 original size:18 final size:18
Alignment explanation
Indices: 9235359--9235395 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9235349 AAAACATCTA
*
9235359 TTTTTACAATATTCATTT
1 TTTTTAAAATATTCATTT
*
9235377 TTTTTAAAATTTTCATTT
1 TTTTTAAAATATTCATTT
9235395 T
1 T
9235396 AAATTATATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTAAAATATTCATTT
Found at i:9239954 original size:29 final size:29
Alignment explanation
Indices: 9239912--9240034 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 29
9239902 TAAACACTCC
* *
9239912 ACTAAACCGA-CCACTAACTCCATTACCCT
1 ACTAAACC-ATCCACTACCTCCATCACCCT
9239941 ACTAAACCATCCACTACCTCCATCACCCT
1 ACTAAACCATCCACTACCTCCATCACCCT
9239970 ACTAAACCATCCACTACCTCCATCACCCCCACACCCT
1 ACTAAACCATCCACTACCTCCAT--------CACCCT
9240007 ACTAAACCATCCACTACCTCCATCACCC
1 ACTAAACCATCCACTACCTCCATCACCC
9240035 CCACTAACTC
Statistics
Matches: 83, Mismatches: 2, Indels: 18
0.81 0.02 0.17
Matches are distributed among these distances:
28 1 0.01
29 53 0.64
37 29 0.35
ACGTcount: A:0.32, C:0.49, G:0.01, T:0.19
Consensus pattern (29 bp):
ACTAAACCATCCACTACCTCCATCACCCT
Found at i:9240014 original size:37 final size:37
Alignment explanation
Indices: 9239964--9240038 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
9239954 CTACCTCCAT
9239964 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
9240001 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
9240038 C
1 C
9240039 TAACTCCATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.55, G:0.00, T:0.16
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:9240040 original size:18 final size:18
Alignment explanation
Indices: 9239980--9240052 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
9239970 ACTAAACCAT
9239980 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
9239998 CCAC-ACC-CTACTAAACCAT
1 CCACTACCTCCA-T-CACC-C
9240017 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
*
9240035 CCACTAACTCCATCACCC
1 CCACTACCTCCATCACCC
9240053 TACTTGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
16 2 0.05
17 4 0.09
18 24 0.56
19 7 0.16
20 4 0.09
21 2 0.05
ACGTcount: A:0.27, C:0.56, G:0.00, T:0.16
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:9240464 original size:63 final size:63
Alignment explanation
Indices: 9240322--9240464 Score: 177
Period size: 63 Copynumber: 2.3 Consensus size: 63
9240312 ATTTAACCCT
* *
9240322 TTTTTATTTTTATTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTATTATA
* *
9240386 TTTGTT-TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA
1 TTT-TTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTATTATA
9240447 TTATTTATTTATTATTAT
1 TT-TTTATTT-TTATTAT
9240465 AGATTTATTA
Statistics
Matches: 70, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
61 17 0.24
62 8 0.11
63 27 0.39
64 16 0.23
65 2 0.03
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (63 bp):
TTTTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTATTATA
Found at i:9240710 original size:21 final size:21
Alignment explanation
Indices: 9240681--9240720 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9240671 ATTTTTAATA
9240681 TTATCATCAACATATTTTTTG
1 TTATCATCAACATATTTTTTG
* * *
9240702 TTATTATCATCATGTTTTT
1 TTATCATCAACATATTTTT
9240721 AATATTATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.05, T:0.57
Consensus pattern (21 bp):
TTATCATCAACATATTTTTTG
Found at i:9241158 original size:126 final size:126
Alignment explanation
Indices: 9240933--9241176 Score: 409
Period size: 126 Copynumber: 1.9 Consensus size: 126
9240923 CATTGATCTT
* * *
9240933 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTTGGTATTTAAAGAATTCAAAGAATTGTGCCCTA
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCAAAGAATCGTGCCCTA
*
9240998 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATAGTCGAATATCCTCTTACCAGTTCA
*
9241059 CTCTCAAAAATTTTCAAAATAAAGGTAATGTTCGGTATTTAAAGAATTCGAAA-AATCGTGCCCT
1 CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTC-AAAGAATCGTGCCCT
* *
9241123 AACGTACTGGGTTTTGCTTTCTTTGTTTGTTTTGAATAGTCGAATATCCTCTTA
65 AACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATAGTCGAATATCCTCTTA
9241177 AGGCTAAAAC
Statistics
Matches: 110, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
126 107 0.97
127 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (126 bp):
CTCTCAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCAAAGAATCGTGCCCTA
ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATAGTCGAATATCCTCTTACCAGTTCA
Found at i:9247315 original size:20 final size:20
Alignment explanation
Indices: 9247290--9247354 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 20
9247280 AAAATAGAAG
9247290 AGAAAAAGGAGAAAGAAAAA
1 AGAAAAAGGAGAAAGAAAAA
*
9247310 AGAAAAAGGAAAAAGAAGTGAAAA
1 AGAAAAAGGAGAAAG-A---AAAA
* *
9247334 ATAAAAAAGAGAAAGAAAAA
1 AGAAAAAGGAGAAAGAAAAA
9247354 A
1 A
9247355 AAGCAAATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 19 0.51
21 1 0.03
23 1 0.03
24 16 0.43
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (20 bp):
AGAAAAAGGAGAAAGAAAAA
Found at i:9247354 original size:13 final size:13
Alignment explanation
Indices: 9247278--9247354 Score: 55
Period size: 13 Copynumber: 5.5 Consensus size: 13
9247268 TCACTTTCAA
*
9247278 AAAAAATAGAAGAG
1 AAAAAAGAGAA-AG
*
9247292 AAAAAGGAGAAAG
1 AAAAAAGAGAAAG
*
9247305 AAAAAAGAAAAAGG
1 AAAAAAGAGAAA-G
* *
9247319 AAAAAGAAGTGAAAAAT
1 -AAAA-AA--GAGAAAG
9247336 AAAAAAGAGAAAG
1 AAAAAAGAGAAAG
9247349 AAAAAA
1 AAAAAA
9247355 AAGCAAATGA
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
13 23 0.45
14 10 0.20
15 6 0.12
16 6 0.12
18 6 0.12
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (13 bp):
AAAAAAGAGAAAG
Found at i:9251593 original size:46 final size:46
Alignment explanation
Indices: 9251526--9251707 Score: 247
Period size: 46 Copynumber: 4.0 Consensus size: 46
9251516 AGTGTGCTCT
* *
9251526 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
9251572 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
9251618 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
9251664 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
9251708 TCATGTCAAA
Statistics
Matches: 121, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 121 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:9251684 original size:92 final size:92
Alignment explanation
Indices: 9251527--9251707 Score: 272
Period size: 92 Copynumber: 2.0 Consensus size: 92
9251517 GTGTGCTCTC
*** * * * *
9251527 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGA
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
* *
9251592 CCATGGTTGAAAGATACCATGGCAACG
66 CCATAGTTGAAAGACACCATGGCAACG
9251619 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
*
9251684 CCATAGTTGAAAGACACTATGGCA
66 CCATAGTTGAAAGACACCATGGCA
9251708 TCATGTCAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 79 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (92 bp):
TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGA
CCATAGTTGAAAGACACCATGGCAACG
Found at i:9256798 original size:38 final size:40
Alignment explanation
Indices: 9256744--9256906 Score: 186
Period size: 46 Copynumber: 3.8 Consensus size: 40
9256734 TCTGATATGA
9256744 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
9256784 -A-GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
9256822 ATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ------AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
9256868 ATATGAAATGAACAAGACCATGGTTGAAAGATACCATGG
1 A-ATG---TG--TAAGACCATGGTTGAAAGATACCATGG
9256907 TTGAAAGATA
Statistics
Matches: 107, Mismatches: 2, Indels: 22
0.82 0.02 0.17
Matches are distributed among these distances:
38 37 0.35
39 1 0.01
40 1 0.01
41 3 0.03
44 2 0.02
45 1 0.01
46 62 0.58
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (40 bp):
AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:9256852 original size:46 final size:46
Alignment explanation
Indices: 9256785--9256906 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
9256775 GGCAACCTGA
9256785 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
9256831 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
***
9256877 GAACAAGACCATGGTTGAAAGATACCATGG
1 GTGTAAGACCATGGTTGAAAGATACCATGG
9256907 TTGAAAGATA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:9256903 original size:16 final size:16
Alignment explanation
Indices: 9256884--9256922 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
9256874 AATGAACAAG
9256884 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
9256900 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
9256916 ACCATGG
1 ACCATGG
9256923 CAACGTGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (16 bp):
ACCATGGTTGAAAGAT
Found at i:9256912 original size:62 final size:62
Alignment explanation
Indices: 9256838--9256968 Score: 262
Period size: 62 Copynumber: 2.1 Consensus size: 62
9256828 AATGTGTAAG
9256838 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGAT
9256900 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGAT
9256962 ACCATGG
1 ACCATGG
9256969 CAACATGACA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 69 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (62 bp):
ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGAT
Found at i:9256950 original size:46 final size:46
Alignment explanation
Indices: 9256900--9257021 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 46
9256890 GTTGAAAGAT
* *
9256900 ACCATGGTTGAAAGATACCATGGCAACGTGATATG-AAATGAACAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAACAAG
**
9256946 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAACAAG
* * * *
9256992 ACCATAGTTGAAAGACACTATGGCATCATG
1 ACCATGGTTGAAAGATACCATGGCAACATG
9257022 TCAAAGATAA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 1 0.01
46 66 0.99
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.20
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAACAAG
Found at i:9256985 original size:108 final size:108
Alignment explanation
Indices: 9256792--9257006 Score: 324
Period size: 108 Copynumber: 2.0 Consensus size: 108
9256782 TGAGTGTAAG
***
9256792 ACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACC
* * *
9256857 ATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGAT
66 ATGGCAACATGACATGAAATGAACAAGACCATAGTTGAAAGAT
* *
9256900 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACC
**
9256965 ATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
66 ATGGCAACATGACATG-AAATGAACAAGACCATAGTTGAAAGA
9257007 CACTATGGCA
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
107 1 0.01
108 95 0.99
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.20
Consensus pattern (108 bp):
ACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGAACAAGACCATGGTTGAAAGATACC
ATGGCAACATGACATGAAATGAACAAGACCATAGTTGAAAGAT
Found at i:9257997 original size:133 final size:132
Alignment explanation
Indices: 9257658--9257984 Score: 487
Period size: 133 Copynumber: 2.5 Consensus size: 132
9257648 TCTTCGCTGA
* ** *
9257658 GCAGGAGTGGAGCAGATCAAATTTTGGC-GAGTCTTATCTCCATGTATCGACAATGGAGCAGATT
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGA-TCTTATCTCCATGTATCGGCAATGGAGCAGATT
* * * ** *
9257722 TCAGCTACAAGCCTTATTCTACTGAGCAGGAGTGGAACGGGTTAAATATAGCAGATCTCATCCCA
65 TCAGCCACCAGCCTTATTCTACTGAGCAGGAGTGAAACAAGCTAAATATAGCAGATCTCATCCCA
9257787 CTG
130 CTG
* * *
9257790 GCAGGAGTGGAACAGATCAAATTTCAGCGGATTTTGTCTCCATGTATCGGTAATGGAGCAGATTT
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
*
9257855 CAGCCACCAGCCTTA-TCTTCACTGAGCAGGAGTGAAACAAGCTAAATATAGCAGATCTCATTCC
66 CAGCCACCAGCCTTATTC-T-ACTGAGCAGGAGTGAAACAAGCTAAATATAGCAGATCTCATCCC
9257919 ACTG
129 ACTG
9257923 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGA
1 GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGA
9257985 GTCAAACCAC
Statistics
Matches: 175, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
131 2 0.01
132 69 0.39
133 104 0.59
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
GCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGATTT
CAGCCACCAGCCTTATTCTACTGAGCAGGAGTGAAACAAGCTAAATATAGCAGATCTCATCCCAC
TG
Done.