Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 313 of 328
Found at i:92956181 original size:27 final size:28
Alignment explanation
Indices: 92956151--92956219 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
92956141 GATACAAATG
*
92956151 TTGTGGTAGAGCCACCAG-AACAGATAT
1 TTGTGGCAGAGCCACCAGAAACAGATAT
*
92956178 TTGTGGCATAGCCACCAGAAACAGATA-
1 TTGTGGCAGAGCCACCAGAAACAGATAT
* *
92956205 ATGTGGCAAAGCCAC
1 TTGTGGCAGAGCCAC
92956220 TTAACAGAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 29 0.78
28 8 0.22
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (28 bp):
TTGTGGCAGAGCCACCAGAAACAGATAT
Found at i:92956406 original size:22 final size:22
Alignment explanation
Indices: 92956378--92956442 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
92956368 GCAAATACGT
*
92956378 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
92956400 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
92956422 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
92956443 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:92956898 original size:27 final size:27
Alignment explanation
Indices: 92956868--92957008 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
92956858 TGGCAAAATG
* * *
92956868 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
92956895 GTAATTCTGCCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
92956922 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
92956949 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
92956976 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
92957003 ATAATT
1 GTAATT
92957009 TTGTAAATCG
Statistics
Matches: 98, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:92961373 original size:255 final size:253
Alignment explanation
Indices: 92960910--92961418 Score: 849
Period size: 255 Copynumber: 2.0 Consensus size: 253
92960900 TAGTTCCAGC
* * *
92960910 TACACTATCCAAATGCAACTTCAGTTAAAATTTAATTTGCATCTGAAAGACAACTTGACTTGACA
1 TACACTATCCAAATGCAACATCAATTAAAAATTAATTTGCATCTGAAAGACAACTTGACTTGACA
*
92960975 TATTTGATTAGCATTATTTGATCAATAAACCTAGACTCTTTAAGTACATTTGAGGATTTTAAGAA
66 TATTTGATTAGCATTATTTGATCAATAAACCTAGACTCTTTAAGTACATTCGAGGATTTTAAGAA
* *
92961040 CACTTTATTAAAGTTAAAACATGGAGAAAATCAAGTCAAAGAAGGATTTTTGAAGACTTTCAAAT
131 CACTTTATTAAAGTCAAAACATGGAGAAAATCAAGTCAAACAAGGATTTTTGAAGACTTTCAAAT
* *
92961105 GTCATCCAGTTTCTTTAATTGAAGATATTTGTTTTCTAAAGAATATTGCACTGAGAAT
196 GTCATCAAGTTTCTTTAATTGAAGATATTTGTTTTCTAAAGAATATTACACTGAGAAT
* * * *
92961163 TACACTATCTAAATGCAACATCAATTAAAAATTAATTTGCATTTGAATGGCAA-TGTGACTTGAC
1 TACACTATCCAAATGCAACATCAATTAAAAATTAATTTGCATCTGAAAGACAACT-TGACTTGAC
*
92961227 ATATTTGATTAGCATTATTTGATCAATAAACCTAGACTCTTTAAGTATACCTTCGAGGATTTTAA
65 ATATTTGATTAGCATTATTTGATCAATAAACCTAGACTCTTTAAG--TACATTCGAGGATTTTAA
* *
92961292 GAATAGTTTATTAAAGTCAAAACATGGAGAAAATCAAGTCAAACAAGGATTTTTGAAGACTTTCA
128 GAACACTTTATTAAAGTCAAAACATGGAGAAAATCAAGTCAAACAAGGATTTTTGAAGACTTTCA
92961357 AATGTCATCAAGTTTCTTTAATTGAAGATATTTGTTTTCTAAAGAATATTACACTGAGAAT
193 AATGTCATCAAGTTTCTTTAATTGAAGATATTTGTTTTCTAAAGAATATTACACTGAGAAT
92961418 T
1 T
92961419 TTCTCTGTTA
Statistics
Matches: 238, Mismatches: 15, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
252 1 0.00
253 100 0.42
255 137 0.58
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (253 bp):
TACACTATCCAAATGCAACATCAATTAAAAATTAATTTGCATCTGAAAGACAACTTGACTTGACA
TATTTGATTAGCATTATTTGATCAATAAACCTAGACTCTTTAAGTACATTCGAGGATTTTAAGAA
CACTTTATTAAAGTCAAAACATGGAGAAAATCAAGTCAAACAAGGATTTTTGAAGACTTTCAAAT
GTCATCAAGTTTCTTTAATTGAAGATATTTGTTTTCTAAAGAATATTACACTGAGAAT
Found at i:92962100 original size:30 final size:30
Alignment explanation
Indices: 92962064--92962124 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
92962054 GTTTATCAGG
92962064 TCTATGGATGAAAAAGCATGTCATTCAATT
1 TCTATGGATGAAAAAGCATGTCATTCAATT
92962094 TCTATGGATGAAAAAGCATGTCATTCAATT
1 TCTATGGATGAAAAAGCATGTCATTCAATT
92962124 T
1 T
92962125 TGATTGGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (30 bp):
TCTATGGATGAAAAAGCATGTCATTCAATT
Found at i:92963167 original size:12 final size:12
Alignment explanation
Indices: 92963144--92963184 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
92963134 AATCAGTAAT
*
92963144 CAGTAACGGTAG
1 CAGTAACAGTAG
*
92963156 CAGTAGCAGTAG
1 CAGTAACAGTAG
*
92963168 CAGTAACAGTAA
1 CAGTAACAGTAG
92963180 CAGTA
1 CAGTA
92963185 TTCAACACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (12 bp):
CAGTAACAGTAG
Found at i:92963177 original size:18 final size:18
Alignment explanation
Indices: 92963137--92963184 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
92963127 AGTACCTAAT
* *
92963137 CAGTAATCAGTAACGGTAG
1 CAGTAA-CAGTAACAGTAA
* *
92963156 CAGTAGCAGTAGCAGTAA
1 CAGTAACAGTAACAGTAA
92963174 CAGTAACAGTA
1 CAGTAACAGTA
92963185 TTCAACACAC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.19
Consensus pattern (18 bp):
CAGTAACAGTAACAGTAA
Found at i:92963218 original size:45 final size:45
Alignment explanation
Indices: 92963168--92963274 Score: 142
Period size: 45 Copynumber: 2.4 Consensus size: 45
92963158 GTAGCAGTAG
* * *
92963168 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAA
1 CAGTAACGGTAACAGTAGTCAACACACAAAGTGCTGAATCGGTAA
* * * *
92963213 CAGTAATGGTAACAATAGTCGACACACAAAGTGTTGAATCGGTAA
1 CAGTAACGGTAACAGTAGTCAACACACAAAGTGCTGAATCGGTAA
*
92963258 TAGTAACGGTAACAGTA
1 CAGTAACGGTAACAGTA
92963275 ACAGTAGTCG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (45 bp):
CAGTAACGGTAACAGTAGTCAACACACAAAGTGCTGAATCGGTAA
Found at i:92963283 original size:51 final size:51
Alignment explanation
Indices: 92963170--92963289 Score: 135
Period size: 45 Copynumber: 2.5 Consensus size: 51
92963160 AGCAGTAGCA
* * * *
92963170 GTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAACAGTAATG
1 GTAACAGTAACAGTAGTCGACACACAAAGTGCTGAATCGGTAACAGTAACG
* *
92963221 GTAAC----A-A-TAGTCGACACACAAAGTGTTGAATCGGTAATAGTAACG
1 GTAACAGTAACAGTAGTCGACACACAAAGTGCTGAATCGGTAACAGTAACG
*
92963266 GTAACAGTAACAGTAGTCGGCACA
1 GTAACAGTAACAGTAGTCGACACA
92963290 TAAGTGCCTG
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
45 37 0.66
46 1 0.02
47 1 0.02
49 1 0.02
50 1 0.02
51 15 0.27
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (51 bp):
GTAACAGTAACAGTAGTCGACACACAAAGTGCTGAATCGGTAACAGTAACG
Found at i:92963672 original size:26 final size:26
Alignment explanation
Indices: 92963643--92963752 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
92963633 TGATACAAAT
92963643 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
92963669 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
92963695 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
92963721 TGGTAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92963747 TGATAA
1 TGATAA
92963753 GAAATTCATG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92963728 original size:13 final size:14
Alignment explanation
Indices: 92963708--92963748 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
92963698 TAATGGGTTA
92963708 GGTAAATGTTTCAT
1 GGTAAATGTTTCAT
92963722 GGT-AATGGTTT-A-
1 GGTAAAT-GTTTCAT
92963734 GGTAAATGTTTCAT
1 GGTAAATGTTTCAT
92963748 G
1 G
92963749 ATAAGAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
12 7 0.30
13 8 0.35
14 8 0.35
ACGTcount: A:0.27, C:0.05, G:0.27, T:0.41
Consensus pattern (14 bp):
GGTAAATGTTTCAT
Found at i:92965782 original size:137 final size:136
Alignment explanation
Indices: 92965537--92965819 Score: 530
Period size: 137 Copynumber: 2.1 Consensus size: 136
92965527 TAGTCTCCCC
*
92965537 AAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
1 AAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
92965602 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTG
66 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTG
92965667 TTACCT
131 TTACCT
*
92965673 AAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCCTACTGT
1 AAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
92965738 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
65 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
92965803 GTTACCT
130 GTTACCT
*
92965810 GAATGGGCTT
1 AAATGGGCTT
92965820 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 17 0.12
137 126 0.88
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
AAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTG
TTACCT
Found at i:92967091 original size:5 final size:5
Alignment explanation
Indices: 92967081--92967108 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
92967071 TGTTTCTTCT
92967081 ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATA
92967109 ATATACTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:92973200 original size:45 final size:45
Alignment explanation
Indices: 92973150--92973256 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
92973140 GTAGCAGTAG
** * *
92973150 CAGTAACAATAACAGTATTCAACACATAAAGTG-CTGAATCTGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAATCGGTAA
* * *
92973195 CAGTAATGGTAACAATATTCGACACACAAAGTGTCGAATCGGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
*
92973240 CAATAACGGTAACAGTA
1 CAGTAACGGTAACAGTA
92973257 ACAGTAGTCG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCGGTAA
Found at i:92973632 original size:14 final size:14
Alignment explanation
Indices: 92973613--92973651 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
92973603 TCAGTTCATT
*
92973613 AAATACGTACCTTA
1 AAATACTTACCTTA
92973627 AAATACTTACCTTA
1 AAATACTTACCTTA
92973641 AAATACTTACC
1 AAATACTTACC
92973652 ACACATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.44, C:0.23, G:0.03, T:0.31
Consensus pattern (14 bp):
AAATACTTACCTTA
Found at i:92973913 original size:5 final size:5
Alignment explanation
Indices: 92973903--92973940 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
92973893 TGTTTCTTTT
92973903 ATATA ATATA ATATA ATATA ATAT- A-ATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
92973941 CTTAATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 27 0.87
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:92973923 original size:15 final size:14
Alignment explanation
Indices: 92973903--92973940 Score: 60
Period size: 13 Copynumber: 2.7 Consensus size: 14
92973893 TGTTTCTTTT
92973903 ATATAATATAATATA
1 ATATAATATAA-ATA
92973918 ATATAATAT-AATA
1 ATATAATATAAATA
92973931 ATATAATATA
1 ATATAATATA
92973941 CTTAATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 12 0.55
14 1 0.05
15 9 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATAATATAAATA
Found at i:92979962 original size:18 final size:18
Alignment explanation
Indices: 92979939--92979976 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
92979929 ATGATAACAT
92979939 ACGAAAGATAATAATCTA
1 ACGAAAGATAATAATCTA
92979957 ACGAAAGATAATAATCTA
1 ACGAAAGATAATAATCTA
92979975 AC
1 AC
92979977 TATGATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (18 bp):
ACGAAAGATAATAATCTA
Found at i:92990823 original size:71 final size:71
Alignment explanation
Indices: 92990739--92990902 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
92990729 CGATTTGTCT
*
92990739 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGAAATCACGCATGCGACCCAGCTACATTTAT
92990804 CTTTCA
66 CTTTCA
* *
92990810 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGAAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGAAATCACGCATGCGACCCAGCTACATTTAT
92990875 CTTTCA
66 CTTTCA
92990881 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
92990903 GATACATCTC
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGAAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:92990940 original size:71 final size:70
Alignment explanation
Indices: 92990739--92990936 Score: 240
Period size: 71 Copynumber: 2.8 Consensus size: 70
92990729 CGATTTGTCT
* * * * * *
92990739 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTCGAAATCACACATGCGACCTAGCTACATTTAT
92990804 CTTTCA
65 CTTTCA
* * * *
92990810 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGAAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTCGAAATCACACATGCGACCTAGCTACATTTAT
92990875 CTTTCA
65 CTTTCA
* *
92990881 CGTAGCTCTCTTGTCTACATGG-GATACAT-CTCG-TATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTCGAAATCACACATGCGACCTAGCTAC
92990937 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
68 20 0.17
69 3 0.03
70 1 0.01
71 93 0.79
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTCGAAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:92992880 original size:20 final size:20
Alignment explanation
Indices: 92992829--92992886 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
92992819 AGATAGGGGC
* * *
92992829 ACATGCCAGCGTGGCTTGGG
1 ACATGCCAGTGTGGCCTGGA
* *
92992849 ACACGCCCGTGTGGCCTGGA
1 ACATGCCAGTGTGGCCTGGA
92992869 ACATGCCAGTGTGGCCTG
1 ACATGCCAGTGTGGCCTG
92992887 CCCATGGGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.19
Consensus pattern (20 bp):
ACATGCCAGTGTGGCCTGGA
Found at i:92993752 original size:53 final size:54
Alignment explanation
Indices: 92993681--92993841 Score: 231
Period size: 58 Copynumber: 3.0 Consensus size: 54
92993671 TCATATATCA
*
92993681 TACCGATGCCATATCCCAGA-TATGGTCTTATACGGAATCACATTATCACATTG
1 TACCGATGCCATAGCCCAGACTATGGTCTTATACGGAATCACATTATCACATTG
*
92993734 TACCAATGCCATAGCCCAGCCCAACTATGGTCTTATACGGAATCACATTATCACATTG
1 TACCGATGCCATAGCCCAG----ACTATGGTCTTATACGGAATCACATTATCACATTG
92993792 TACCGATGCCATAGCCCA-ACTATGGTCTTATACGGAAGT-ACA-TATCACAT
1 TACCGATGCCATAGCCCAGACTATGGTCTTATACGGAA-TCACATTATCACAT
92993842 CTTTTCCGTC
Statistics
Matches: 99, Mismatches: 3, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
52 8 0.08
53 39 0.39
54 1 0.01
57 1 0.01
58 50 0.51
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (54 bp):
TACCGATGCCATAGCCCAGACTATGGTCTTATACGGAATCACATTATCACATTG
Found at i:92996651 original size:38 final size:38
Alignment explanation
Indices: 92996609--92996709 Score: 166
Period size: 38 Copynumber: 2.7 Consensus size: 38
92996599 TGTAATAGAA
**
92996609 CAATTCAACACTAGCAGTACTCATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTAAACATGCTTAACATGTATT
92996647 CAATTCAACACTAGCAGTAAACATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTAAACATGCTTAACATGTATT
* *
92996685 CAATTCAATACTAGCAATAAACATG
1 CAATTCAACACTAGCAGTAAACATG
92996710 TTCTATCATA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (38 bp):
CAATTCAACACTAGCAGTAAACATGCTTAACATGTATT
Found at i:92999812 original size:16 final size:16
Alignment explanation
Indices: 92999791--92999822 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
92999781 TGCAAGTAGG
92999791 ATTCTATTATATTTAT
1 ATTCTATTATATTTAT
92999807 ATTCTATTATATTTAT
1 ATTCTATTATATTTAT
92999823 TCGGTTGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTCTATTATATTTAT
Found at i:93010340 original size:33 final size:33
Alignment explanation
Indices: 93010303--93010371 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
93010293 ATATTGTAAA
*
93010303 AGATCGCATAAACTACTGAATGGAGTAGTCTAG
1 AGATCGCATAAACGACTGAATGGAGTAGTCTAG
*
93010336 AGATCGCATAGACGACTGAATGGAGTAGTCTAG
1 AGATCGCATAAACGACTGAATGGAGTAGTCTAG
93010369 AGA
1 AGA
93010372 CTATGTGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (33 bp):
AGATCGCATAAACGACTGAATGGAGTAGTCTAG
Found at i:93012714 original size:13 final size:13
Alignment explanation
Indices: 93012696--93012720 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93012686 TAGATTGGAT
93012696 TTGATTATGTAAA
1 TTGATTATGTAAA
93012709 TTGATTATGTAA
1 TTGATTATGTAA
93012721 TCTTGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTGATTATGTAAA
Found at i:93013561 original size:18 final size:16
Alignment explanation
Indices: 93013538--93013574 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
93013528 TACGTTTATA
93013538 ATATATTATATTATATTT
1 ATATATTAT-TTA-ATTT
93013556 ATATATTATTTAATTT
1 ATATATTATTTAATTT
93013572 ATA
1 ATA
93013575 ACATAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 3 0.16
18 9 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATATATTATTTAATTT
Found at i:93014117 original size:27 final size:27
Alignment explanation
Indices: 93014067--93014119 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
93014057 CAAATATTAG
** *
93014067 TCAAAATAAATGCTGATTACAAATAAT
1 TCAAAATAAATGAAGAGTACAAATAAT
*
93014094 TCAAAATAAATGAAGAGTAGAAATAA
1 TCAAAATAAATGAAGAGTACAAATAA
93014120 CATTGTCTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.57, C:0.08, G:0.11, T:0.25
Consensus pattern (27 bp):
TCAAAATAAATGAAGAGTACAAATAAT
Found at i:93016370 original size:352 final size:352
Alignment explanation
Indices: 93015666--93016711 Score: 1860
Period size: 352 Copynumber: 3.0 Consensus size: 352
93015656 TACCCTAATA
* *
93015666 GACTTTAGCATTCAGCATTTAAAAGGGTTGATCACTAATGTTGTTTCCTATTGCTGTAGCTATTT
1 GACTTTAGCATTCAGCATTTAAAAGGGTTGATCACTAATGTCGTTTCCTATTGCTGTAGCTAGTT
* *
93015731 TTGTTAATCAGACTCCATTAATTGTCAGAAACGGGTATACCTAAAGTTTTAACA--TA--T---A
66 TTGTTAATCAGACTCCATTAATTGTCGGAAACGGGTATATCTAAAGTTTTAACATGTACTTGGAA
*
93015789 --TCCTTGAAAGGACAAACTTTATACCATGTCCAACTAAAAAACTATATAAACTAGCTTAAAGAT
131 GGTCCTTGAAAGGAAAAACTTTATACCATGTCCAACTAAAAAACTATATAAACTAGCTTAAAGAT
*
93015852 AGGTTAGCACCAATTTTTGCCATGCATCAACCAAGATTTCCAGCCTTAAGAATCTTTTGACATGG
196 AGGTTAGCACCAATTTTTGCCATGCATCAACCAAGATTTCCAACCTTAAGAATCTTTTGACATGG
*
93015917 CACCTCAAATTGGACATAAATTGCTCCCCCCAAAGAAAAAGGCAAACAAATTTTAGTCTATGATG
261 CACCTC-AACTGGACATAAATTGCTCCCCCCAAAGAAAAAGGCAAACAAATTTTAGTCTATGATG
93015982 TTTCTCAACTAAACCTTATATAGGGATG
325 TTTCTCAACTAAACCTTATATAGGGATG
* *
93016010 GA-TTTAGCATTCAGCATTTAAAAGGGTTGATCACTAATGTCGTTTCCTACTGCCGTAGCTAGTT
1 GACTTTAGCATTCAGCATTTAAAAGGGTTGATCACTAATGTCGTTTCCTATTGCTGTAGCTAGTT
93016074 TTGTTAATCAGACTCCATTAATTGTCGGAAACGGGTATATCTAAAGTTTTAACATGTACTTGGAA
66 TTGTTAATCAGACTCCATTAATTGTCGGAAACGGGTATATCTAAAGTTTTAACATGTACTTGGAA
93016139 GGTCCTTGAAAGGAAAAACTTTATACCATGTCCAACTAAAAAACTATATAAACTAGCTTAAAGAT
131 GGTCCTTGAAAGGAAAAACTTTATACCATGTCCAACTAAAAAACTATATAAACTAGCTTAAAGAT
93016204 AGGTTAGCACCAATTTTTGCCATGCATCAACCAAGATTTCCAACCTTAAGAATCTTTTGACATGG
196 AGGTTAGCACCAATTTTTGCCATGCATCAACCAAGATTTCCAACCTTAAGAATCTTTTGACATGG
*
93016269 CACCTCAACTGGACATAAATTGCTCCCCCCAAAGAAAAAGGCAAACAAATTTTAGTCTTTGATGT
261 CACCTCAACTGGACATAAATTGCTCCCCCCAAAGAAAAAGGCAAACAAATTTTAGTCTATGATGT
93016334 TTCTCAACTAAACCTTATATAGGGATG
326 TTCTCAACTAAACCTTATATAGGGATG
93016361 GACTTTAGCATTCAGCATTTAAAAGGGTTGATCACTAATGTCGTTTCCTATTGCTGTAGCTAGTT
1 GACTTTAGCATTCAGCATTTAAAAGGGTTGATCACTAATGTCGTTTCCTATTGCTGTAGCTAGTT
93016426 TTGTTAATCAGACTCCATTAATTGTCGGAAACGGGTATATCTAAAGTTTTAACATGTACTTGGAA
66 TTGTTAATCAGACTCCATTAATTGTCGGAAACGGGTATATCTAAAGTTTTAACATGTACTTGGAA
*
93016491 GGTCCTTGAAAGGAAAAACTTTATACCATGTCCAACTAAAAAACTATATAAACAAGCTTAAAGAT
131 GGTCCTTGAAAGGAAAAACTTTATACCATGTCCAACTAAAAAACTATATAAACTAGCTTAAAGAT
* * *
93016556 AGATTAGCACCAATTTTTGCTAAGCATCAACCAAGATTTCCAACCTTAAGAATCTTTTGACATGG
196 AGGTTAGCACCAATTTTTGCCATGCATCAACCAAGATTTCCAACCTTAAGAATCTTTTGACATGG
* *
93016621 CACCTCAACTGGACATAAATTGCTGCCCCCAAAGAAAAAGGCAAGCAAATTTTAGTCTATGATGT
261 CACCTCAACTGGACATAAATTGCTCCCCCCAAAGAAAAAGGCAAACAAATTTTAGTCTATGATGT
*
93016686 TTCTCAACTAAACGTTATATAGGGAT
326 TTCTCAACTAAACCTTATATAGGGAT
93016712 TGCCATGGAA
Statistics
Matches: 672, Mismatches: 20, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
343 110 0.16
344 2 0.00
345 2 0.00
347 1 0.00
350 1 0.00
351 86 0.13
352 470 0.70
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (352 bp):
GACTTTAGCATTCAGCATTTAAAAGGGTTGATCACTAATGTCGTTTCCTATTGCTGTAGCTAGTT
TTGTTAATCAGACTCCATTAATTGTCGGAAACGGGTATATCTAAAGTTTTAACATGTACTTGGAA
GGTCCTTGAAAGGAAAAACTTTATACCATGTCCAACTAAAAAACTATATAAACTAGCTTAAAGAT
AGGTTAGCACCAATTTTTGCCATGCATCAACCAAGATTTCCAACCTTAAGAATCTTTTGACATGG
CACCTCAACTGGACATAAATTGCTCCCCCCAAAGAAAAAGGCAAACAAATTTTAGTCTATGATGT
TTCTCAACTAAACCTTATATAGGGATG
Found at i:93022607 original size:9 final size:9
Alignment explanation
Indices: 93022593--93022625 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
93022583 GTTAAACGAA
93022593 TCGAGTTAT
1 TCGAGTTAT
*
93022602 TCGAGTTAA
1 TCGAGTTAT
93022611 TCGAGTTAT
1 TCGAGTTAT
93022620 TCGAGT
1 TCGAGT
93022626 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:93022614 original size:18 final size:18
Alignment explanation
Indices: 93022591--93022625 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
93022581 GAGTTAAACG
93022591 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
93022609 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
93022626 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:93022703 original size:9 final size:9
Alignment explanation
Indices: 93022676--93022712 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
93022666 TGAGTTTTCG
93022676 AATTCGAAT
1 AATTCGAAT
* *
93022685 AACTCCAAT
1 AATTCGAAT
93022694 AATTCGAAT
1 AATTCGAAT
93022703 AATTCGAAT
1 AATTCGAAT
93022712 A
1 A
93022713 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:93022932 original size:20 final size:20
Alignment explanation
Indices: 93022907--93022944 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
93022897 TACTCCCAAC
93022907 AACCCTCAAAACATTTTAAT
1 AACCCTCAAAACATTTTAAT
*
93022927 AACCCTCAAAACTTTTTA
1 AACCCTCAAAACATTTTA
93022945 TTTTCCCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (20 bp):
AACCCTCAAAACATTTTAAT
Found at i:93027080 original size:14 final size:16
Alignment explanation
Indices: 93027063--93027094 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
93027053 CATGTATAAA
93027063 AAATTTTA-A-AATAG
1 AAATTTTACATAATAG
93027077 AAATTTTACATAATAG
1 AAATTTTACATAATAG
93027093 AA
1 AA
93027095 CAATTTAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.34
Consensus pattern (16 bp):
AAATTTTACATAATAG
Found at i:93027219 original size:21 final size:21
Alignment explanation
Indices: 93027181--93027225 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
93027171 TTTAAAAAAC
* *
93027181 AAATGATAAAATCTTAAA-TA
1 AAATGATAAAAACATAAACTA
93027201 AAATGAATAAAAACATAAACTA
1 AAATG-ATAAAAACATAAACTA
93027223 AAA
1 AAA
93027226 AAACTCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 11 0.52
22 5 0.24
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (21 bp):
AAATGATAAAAACATAAACTA
Found at i:93028466 original size:20 final size:19
Alignment explanation
Indices: 93028438--93028476 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
93028428 ACTTTTATTG
*
93028438 TTTTTTTATATTTTGGTTT
1 TTTTTTTATATTTTAGTTT
*
93028457 TTTTTATTATCTTTTAGTTT
1 TTTTT-TTATATTTTAGTTT
93028477 CATAGTGGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.77
Consensus pattern (19 bp):
TTTTTTTATATTTTAGTTT
Found at i:93029021 original size:177 final size:177
Alignment explanation
Indices: 93028725--93029720 Score: 1181
Period size: 177 Copynumber: 5.6 Consensus size: 177
93028715 TTAAATCTAT
** *
93028725 TCCATTGCCGATACATGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTATTGCTTAGGGAGA
1 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* ** *
93028790 TAAGATCTTCAATCTCCAGTCTGCTTCATTACTACCTT-AAGAAGATAAGACTACAATCACCAAC
66 TAAGATCTTCAATCTTCAGTCTGCTTCCCTACTA-CTTCAAGAAGATAAGACTACAATCTCCAAC
* * **
93028854 CTACTCTCTTGTTACCTCAGAGAGATAAGGCTAGTAACTAAAATCTGC
130 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGC
*
93028902 TCCATTGTCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
*
93028967 TAAGATCTTCCATCTTCAGTCTGCTTCCCTACTACTTCAAGAAGATAAGACTACAAT-TGCCAAC
66 TAAGATCTTCAATCTTCAGTCTGCTTCCCTACTACTTCAAGAAGATAAGACTACAATCT-CCAAC
* * * *
93029031 CTGCTCTCTTGCTACCTCAGAGAGATAAGACCAGTGACTAAAATATGC
130 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGC
* * * * *
93029079 TCCATTGCAGATACATGGAGATAAGATTCGCC-GCATTCGATCTGCTCCACCACTACTTAAGGAG
1 TCCATTGCCGATACATGGAGATAAGATTCGCCATC-TTCGATCTGCTCCACTACTGCTTAGGGAG
* * * * * * *
93029143 ATAAGATCCTCAATCTTCAGTCTG-TTTCCTGCAACCTC-AGAAAGATAAGACTACCATCTTCAA
65 ATAAGATCTTCAATCTTCAGTCTGCTTCCCTACTACTTCAAG-AAGATAAGACTACAATCTCCAA
93029206 CCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGC
129 CCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGC
** * * *
93029255 TCCATTGTTGATACATGAAGATAAGATTCTCCATCTTCGATCTGTTCCACTACTGCTTAGGGAGA
1 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * * *
93029320 TAAGATCTTCAATCCTCAGTCTGCTTCCTTACTACATC-AGAAAGATAAGATTACAATCTCCAAC
66 TAAGATCTTCAATCTTCAGTCTGCTTCCCTACTACTTCAAG-AAGATAAGACTACAATCTCCAAC
* * * *
93029384 CTGCTCTCTTGCTACCTCAAAGAGATAAGGGTGGTGGCTTAAATCTGC
130 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGC
* *
93029432 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGTTCCACTACTGTTTAGGGAGA
1 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * * * * * * *
93029497 TAAGATCCTCAATCTTCAGTCTGCTTTCTTGCCACCTCATA-AATATAAGACT-CAATCTTCAAC
66 TAAGATCTTCAATCTTCAGTCTGCTTCCCTACTACTTCA-AGAAGATAAGACTACAATCTCCAAC
* * * * *
93029560 CTGCTCTCTTGCTACCTTAGAGAGATAAAGCT-GAT-GCTTAAACCTAC
130 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAG-TGGCTAAAATCTGC
* * * * * * **
93029607 TCCATTGCCGATACATGGAGATAAGATTCACCGTCTTTGGTCTGTTCTACTACAACTTCAGGGAG
1 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTT-AGGGAG
* * * * *
93029672 ATAAGACCTGTC-A-CTTCAATCTGC-CCCACTACAACTTCAAGGAGATAAG
65 ATAAGATCT-TCAATCTTCAGTCTGCTTCC-CTACTACTTCAAGAAGATAAG
93029721 GTTTGCTATA
Statistics
Matches: 710, Mismatches: 95, Indels: 30
0.85 0.11 0.04
Matches are distributed among these distances:
174 2 0.00
175 86 0.12
176 205 0.29
177 416 0.59
179 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (177 bp):
TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
TAAGATCTTCAATCTTCAGTCTGCTTCCCTACTACTTCAAGAAGATAAGACTACAATCTCCAACC
TGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGC
Found at i:93029320 original size:353 final size:350
Alignment explanation
Indices: 93028725--93029720 Score: 1268
Period size: 353 Copynumber: 2.8 Consensus size: 350
93028715 TTAAATCTAT
* *
93028725 TCCATTGCCGATACATGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTATTGCTTAGGGAGA
1 TCCATTGCCGATACATGGAGATAAGATTCGCCG-CTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * * * * * **
93028790 TAAGATCTTCAATCTCCAGTCTGCTTCATTACTACCTTAAGAAGATAAGACTACAATCACCAACC
65 TAAGATCCTCAATCTTCAGTCTGTTTC-TTGCAACCTCAA-AAGATAAGACTACAATCTTCAACC
* * *
93028855 TACTCTCTTGTTACCTCAGAGAGATAAGGCTAGTAACTAAAATCTGCTCCATTGTCGATACATGG
128 TGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGT-GCTAAAATCTGCTCCATTGTCGATACATGG
* *
93028920 AGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCCATCTTCA
192 AGATAAGATTCACCATCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTTCCATCTTCA
93028985 GTCTGCTTCCCTACTACTTCAAGAAGATAAGACTACAAT-TGCCAACCTGCTCTCTTGCTACCTC
257 GTCTGCTTCCCTACTACTTCAAGAAGATAAGACTACAATCT-CCAACCTGCTCTCTTGCTACCTC
*
93029049 AGAGAGATAAGACCAGTGACTAAAATATGC
321 AAAGAGATAAGACCAGTGACTAAAATATGC
* * * *
93029079 TCCATTGCAGATACATGGAGATAAGATTCGCCGCATTCGATCTGCTCCACCACTACTTAAGGAGA
1 TCCATTGCCGATACATGGAGATAAGATTCGCCGC-TTCGATCTGCTCCACTACTGCTTAGGGAGA
* *
93029144 TAAGATCCTCAATCTTCAGTCTGTTTCCTGCAACCTCAGAAAGATAAGACTACCATCTTCAACCT
65 TAAGATCCTCAATCTTCAGTCTGTTTCTTGCAACCTCA-AAAGATAAGACTACAATCTTCAACCT
* *
93029209 GCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGTTGATACATGAA
129 GCTCTCTTGCTACCTCAGAGAGATAAGGCTAGT-GCTAAAATCTGCTCCATTGTCGATACATGGA
* * *
93029274 GATAAGATTCTCCATCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTTCAATCCTCAG
193 GATAAGATTCACCATCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTTCCATCTTCAG
* * *
93029339 TCTGCTTCCTTACTACATC-AGAAAGATAAGATTACAATCTCCAACCTGCTCTCTTGCTACCTCA
258 TCTGCTTCCCTACTACTTCAAG-AAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACCTCA
**** * * *
93029403 AAGAGATAAGGGTGGTGGCTTAAATCTGC
322 AAGAGATAAGACCAGTGACTAAAATATGC
* * *
93029432 TCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGTTCCACTACTGTTTAGGGAGA
1 TCCATTGCCGATACATGGAGATAAGATTCGCC-GCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* *
93029497 TAAGATCCTCAATCTTCAGTCTGCTTTCTTGCCACCTCATAAATATAAGACT-CAATCTTCAACC
65 TAAGATCCTCAATCTTCAGTCTG-TTTCTTGCAACCTCA-AAAGATAAGACTACAATCTTCAACC
* * * * * *
93029561 TGCTCTCTTGCTACCTTAGAGAGATAAAGCT-GATGCTTAAACCTACTCCATTGCCGATACATGG
128 TGCTCTCTTGCTACCTCAGAGAGATAAGGCTAG-TGCTAAAATCTGCTCCATTGTCGATACATGG
* * * * ** *
93029625 AGATAAGATTCACCGTCTTTGGTCTGTTCTACTACAACTTCAGGGAGATAAGACCTGT-CA-CTT
192 AGATAAGATTCACCATCTTCGATCTGTTCCACTACTGCTT-AGGGAGATAAGATCT-TCCATCTT
* * * *
93029688 CAATCTGC-CCCACTACAACTTCAAGGAGATAAG
255 CAGTCTGCTTCC-CTACTACTTCAAGAAGATAAG
93029721 GTTTGCTATA
Statistics
Matches: 558, Mismatches: 73, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
351 2 0.00
352 83 0.15
353 364 0.65
354 109 0.20
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (350 bp):
TCCATTGCCGATACATGGAGATAAGATTCGCCGCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
AAGATCCTCAATCTTCAGTCTGTTTCTTGCAACCTCAAAAGATAAGACTACAATCTTCAACCTGC
TCTCTTGCTACCTCAGAGAGATAAGGCTAGTGCTAAAATCTGCTCCATTGTCGATACATGGAGAT
AAGATTCACCATCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTTCCATCTTCAGTCT
GCTTCCCTACTACTTCAAGAAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACCTCAAAGA
GATAAGACCAGTGACTAAAATATGC
Found at i:93029938 original size:64 final size:64
Alignment explanation
Indices: 93029836--93030027 Score: 312
Period size: 64 Copynumber: 3.0 Consensus size: 64
93029826 TTCATGTATC
* * *
93029836 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGTTCCTAACTAGATGTG
* ** * *
93029900 ATGCTTATGTCAACTAATTAGGACACTATAATCGAAATGAATCAAATGTTCCTAACTAGATATG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGTTCCTAACTAGATGTG
93029964 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGTTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGTTCCTAACTAGATGTG
93030028 TTATGAATGA
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 115 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGTTCCTAACTAGATGTG
Found at i:93031187 original size:13 final size:14
Alignment explanation
Indices: 93031156--93031191 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
93031146 TTTTCTCTCC
*
93031156 TTTTTTTATTTTAA
1 TTTTTTTATTTCAA
*
93031170 TTTTTTTATTTCGA
1 TTTTTTTATTTCAA
93031184 TTTTTTTA
1 TTTTTTTA
93031192 AGGTCTCAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (14 bp):
TTTTTTTATTTCAA
Found at i:93032214 original size:17 final size:16
Alignment explanation
Indices: 93032180--93032210 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93032170 CCCATTTACT
*
93032180 TTCCCTCAAACTTTTA
1 TTCCCTAAAACTTTTA
93032196 TTCCCTAAAACTTTT
1 TTCCCTAAAACTTTT
93032211 TATTTTCCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (16 bp):
TTCCCTAAAACTTTTA
Found at i:93032748 original size:5 final size:5
Alignment explanation
Indices: 93032738--93032763 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
93032728 GAACAAATAT
93032738 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
93032764 ATTTCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:93037167 original size:2 final size:2
Alignment explanation
Indices: 93037160--93037189 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
93037150 CATAGCACAA
93037160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93037190 GTGAATTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93037814 original size:34 final size:30
Alignment explanation
Indices: 93037738--93037817 Score: 88
Period size: 34 Copynumber: 2.5 Consensus size: 30
93037728 ACTATATATA
* *
93037738 AAAAATAATGTATAATATAATTTTTAAAAT
1 AAAAATAATGTATAATATAATTTTGAAAAC
*
93037768 AATATATAATGTATAATGTATAAATTTTGAAAAC
1 AA-AAATAATGTATAA--TAT-AATTTTGAAAAC
93037802 AAAAATACATGTATAA
1 AAAAATA-ATGTATAA
93037818 AGAAAATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 2 0.05
31 12 0.29
33 7 0.17
34 20 0.49
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (30 bp):
AAAAATAATGTATAATATAATTTTGAAAAC
Found at i:93037962 original size:21 final size:21
Alignment explanation
Indices: 93037930--93037983 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
93037920 TAAGATAATT
93037930 TTAAA-AACAAAT-AATAAAATC
1 TTAAATAA-AAATGAATAAAA-C
93037951 TTAAATAAAAATGAATAAAAC
1 TTAAATAAAAATGAATAAAAC
*
93037972 ATAAATTAAAAA
1 TTAAA-TAAAAA
93037984 AACTCCATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 14 0.48
22 15 0.52
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.24
Consensus pattern (21 bp):
TTAAATAAAAATGAATAAAAC
Found at i:93039488 original size:13 final size:13
Alignment explanation
Indices: 93039472--93039543 Score: 68
Period size: 13 Copynumber: 5.9 Consensus size: 13
93039462 AATATATATT
93039472 TAATATTTAAAAA
1 TAATATTTAAAAA
93039485 TAATATTTAAAAA
1 TAATATTTAAAAA
93039498 TAATA-TT----A
1 TAATATTTAAAAA
93039506 TAA-ATTTAAAAAA
1 TAATATTT-AAAAA
*
93039519 TAAT-TTAAAAAA
1 TAATATTTAAAAA
93039531 TATATATTTAAAA
1 TA-ATATTTAAAA
93039544 TTTAAAAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
7 1 0.02
8 6 0.12
12 9 0.19
13 26 0.54
14 6 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:93039497 original size:34 final size:34
Alignment explanation
Indices: 93039457--93039566 Score: 145
Period size: 34 Copynumber: 3.2 Consensus size: 34
93039447 TTTTATATTA
93039457 TTAAAAATATATATTTAATATTT-AAAAATAATAT
1 TTAAAAATATATATTTAA-ATTTAAAAAATAATAT
93039491 TTAAAAATA-ATATTATAAATTTAAAAAATAAT-T
1 TTAAAAATATATATT-TAAATTTAAAAAATAATAT
*
93039524 TAAAAAATATATATTTAAAATTTAAAAAATATATAT
1 TTAAAAATATATATTT-AAATTTAAAAAATA-ATAT
93039560 TATAAAA
1 T-TAAAA
93039567 TATTTAAAAT
Statistics
Matches: 67, Mismatches: 2, Indels: 11
0.84 0.03 0.14
Matches are distributed among these distances:
33 19 0.28
34 40 0.60
35 2 0.03
36 2 0.03
37 4 0.06
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (34 bp):
TTAAAAATATATATTTAAATTTAAAAAATAATAT
Found at i:93039594 original size:22 final size:22
Alignment explanation
Indices: 93039527--93039598 Score: 99
Period size: 22 Copynumber: 3.2 Consensus size: 22
93039517 AATAATTTAA
**
93039527 AAAATATATATTTAAAATTTAA
1 AAAATATATATTTAAAATTTTT
*
93039549 AAAATATATATTATAAAATATTT
1 AAAATATATATT-TAAAATTTTT
*
93039572 AAAATATACATTTAAAATTTTT
1 AAAATATATATTTAAAATTTTT
93039594 AAAAT
1 AAAAT
93039599 TAATAATAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
22 26 0.59
23 18 0.41
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATATATATTTAAAATTTTT
Found at i:93039598 original size:67 final size:65
Alignment explanation
Indices: 93039459--93039597 Score: 156
Period size: 67 Copynumber: 2.0 Consensus size: 65
93039449 TTATATTATT
* *
93039459 AAAAATATATATTTAATATTTAAAAATAATATTTAAAAATAATATTATAAATTTAAAAAATAATT
1 AAAAATATATATTTAAAATTTAAAAATAATATTTAAAAATAATAATATAAATTT-AAAAAT-ATT
93039524 TA
64 TA
*
93039526 AAAAATATATATTTAAAATTTAAAAAATATATATTATAAAATATTTAA-AATATACATTT-AAAA
1 AAAAATATATATTTAAAATTT-AAAAATA-ATATT-TAAAA-A--TAATAATATAAATTTAAAAA
*
93039589 TTTTTA
60 TATTTA
93039595 AAA
1 AAA
93039598 TTAATAATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
67 20 0.32
68 7 0.11
69 12 0.19
70 10 0.16
71 1 0.02
72 9 0.15
73 3 0.05
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (65 bp):
AAAAATATATATTTAAAATTTAAAAATAATATTTAAAAATAATAATATAAATTTAAAAATATTTA
Found at i:93039612 original size:45 final size:46
Alignment explanation
Indices: 93039512--93039613 Score: 118
Period size: 45 Copynumber: 2.2 Consensus size: 46
93039502 ATTATAAATT
* *
93039512 TAAAAAATAATTTAAAAAATATATATTTAAAATTTAAAAAATATATAT
1 TAAAAAAT-ATTT-AAAAATATACATTTAAAATTTAAAAAATATATAA
* **
93039560 TATAAAATATTT-AAAATATACATTTAAAATTTTTAAAAT-TAATAA
1 TAAAAAATATTTAAAAATATACATTTAAAATTTAAAAAATAT-ATAA
93039605 TAAAAAATA
1 TAAAAAATA
93039614 AGGAAAATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
44 1 0.02
45 35 0.74
47 4 0.09
48 7 0.15
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (46 bp):
TAAAAAATATTTAAAAATATACATTTAAAATTTAAAAAATATATAA
Found at i:93040544 original size:21 final size:22
Alignment explanation
Indices: 93040507--93040551 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
93040497 AATGTATATT
*
93040507 TTTATAATATATATTTTTAAAA
1 TTTAAAATATATATTTTTAAAA
*
93040529 TTTAAAATAT-TATTTTTTAAA
1 TTTAAAATATATATTTTTAAAA
93040550 TT
1 TT
93040552 ATATTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTAAAATATATATTTTTAAAA
Found at i:93040563 original size:13 final size:12
Alignment explanation
Indices: 93040537--93040636 Score: 50
Period size: 13 Copynumber: 8.2 Consensus size: 12
93040527 AATTTAAAAT
*
93040537 ATTATTTTTTAA
1 ATTATTTTTAAA
93040549 ATTATATTTT-AA
1 ATTAT-TTTTAAA
93040561 A--A-TTTTAAA
1 ATTATTTTTAAA
*
93040570 TATATATTTTTGAA
1 -AT-TATTTTTAAA
*
93040584 ATTATTTCTTATA
1 ATTATTT-TTAAA
*
93040597 A--ATTTTAAAA
1 ATTATTTTTAAA
*
93040607 ATATATTTTTGAA
1 AT-TATTTTTAAA
93040620 ATTAATTTTTATAA
1 ATT-ATTTTTA-AA
93040634 ATT
1 ATT
93040637 TTAAATATTA
Statistics
Matches: 67, Mismatches: 8, Indels: 24
0.68 0.08 0.24
Matches are distributed among these distances:
8 4 0.06
9 2 0.03
10 6 0.09
11 4 0.06
12 14 0.21
13 26 0.39
14 11 0.16
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (12 bp):
ATTATTTTTAAA
Found at i:93040568 original size:35 final size:37
Alignment explanation
Indices: 93040493--93040657 Score: 193
Period size: 36 Copynumber: 4.6 Consensus size: 37
93040483 TTTAAAAAAA
*
93040493 TTTAAATGTATA-TTTTTATAATATATATTTTTA-AAAT
1 TTTAAATATATATTTTTTA-AAT-TATATTTTTATAAAT
*
93040530 TTAAAATAT-TATTTTTTAAATTATA-TTTTA-AAAT
1 TTTAAATATATATTTTTTAAATTATATTTTTATAAAT
* *
93040564 TTTAAATATATATTTTTGAAATTAT-TTCTTATAAAT
1 TTTAAATATATATTTTTTAAATTATATTTTTATAAAT
* *
93040600 TTTAAAAATATATTTTTGAAATTA-ATTTTTATAAAT
1 TTTAAATATATATTTTTTAAATTATATTTTTATAAAT
93040636 TTTAAATAT-TATTTTTTTAAAT
1 TTTAAATATATA-TTTTTTAAAT
93040658 ATTAAATATA
Statistics
Matches: 113, Mismatches: 9, Indels: 13
0.84 0.07 0.10
Matches are distributed among these distances:
34 17 0.15
35 24 0.21
36 59 0.52
37 13 0.12
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (37 bp):
TTTAAATATATATTTTTTAAATTATATTTTTATAAAT
Found at i:93040580 original size:22 final size:22
Alignment explanation
Indices: 93040543--93040685 Score: 66
Period size: 22 Copynumber: 6.3 Consensus size: 22
93040533 AAATATTATT
93040543 TTTTAAAT-TATA-TTTTAAAA
1 TTTTAAATATATATTTTTAAAA
*
93040563 TTTTAAATATATATTTTTGAAA
1 TTTTAAATATATATTTTTAAAA
*** * *
93040585 TTATTTCTTATAAATTTTAAAAATATA
1 TT-TTAAATATATATTTT--TAA-A-A
93040612 TTTTTGAAAT-TA-ATTTTTATAAA
1 -TTTT-AAATATATATTTTTA-AAA
*
93040635 TTTTAAATAT-TATTTTTTTAAA
1 TTTTAAATATATA-TTTTTAAAA
*
93040657 TATT-AA-ATATATTTTTAATAA
1 TTTTAAATATATATTTTTAA-AA
93040678 TATTTAAA
1 T-TTTAAA
93040686 CATTAAAATT
Statistics
Matches: 91, Mismatches: 15, Indels: 31
0.66 0.11 0.23
Matches are distributed among these distances:
20 16 0.18
21 15 0.16
22 23 0.25
23 19 0.21
24 2 0.02
25 2 0.02
26 6 0.07
27 5 0.05
28 3 0.03
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (22 bp):
TTTTAAATATATATTTTTAAAA
Found at i:93040604 original size:71 final size:71
Alignment explanation
Indices: 93040477--93040659 Score: 200
Period size: 71 Copynumber: 2.6 Consensus size: 71
93040467 ATTTTTTGTT
* * *
93040477 ATTAATTTTAAAAAAATTTAAATGTATATTTTTATAATATATATTTTTAAAATTT-AAAATATTA
1 ATTAATTTT-TAAAATTTTAAATATATATTTTTATAATATATATTTTTAAAATTTAAAAATA-TA
*
93040541 TTTTTTAA
64 TTTTTGAA
*
93040549 ATT-ATATTTTAAAATTTTAAATATATATTTTTGA-AAT-TAT-TTCTTATAAATTTTAAAAATA
1 ATTAAT-TTTTAAAATTTTAAATATATATTTTT-ATAATATATATT-TT-TAAAATTTAAAAATA
93040610 TATTTTTGAA
62 TATTTTTGAA
*
93040620 ATTAATTTTTATAAATTTTAAATAT-TATTTTTTTAA-ATAT
1 ATTAATTTTTA-AAATTTTAAATATATATTTTTATAATATAT
93040660 TAAATATATT
Statistics
Matches: 96, Mismatches: 6, Indels: 19
0.79 0.05 0.16
Matches are distributed among these distances:
69 2 0.02
70 5 0.05
71 61 0.64
72 28 0.29
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.55
Consensus pattern (71 bp):
ATTAATTTTTAAAATTTTAAATATATATTTTTATAATATATATTTTTAAAATTTAAAAATATATT
TTTGAA
Found at i:93040683 original size:29 final size:27
Alignment explanation
Indices: 93040651--93040704 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
93040641 ATATTATTTT
* *
93040651 TTTAAATATTAAATATATTTTTAATAATA
1 TTTAAACATTAAA-AT-TTTTAAATAATA
93040680 TTTAAACATTAAAATTTTTAAATAA
1 TTTAAACATTAAAATTTTTAAATAA
93040705 AATTGTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 2 0.09
29 12 0.52
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (27 bp):
TTTAAACATTAAAATTTTTAAATAATA
Found at i:93040707 original size:13 final size:13
Alignment explanation
Indices: 93040689--93040726 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
93040679 ATTTAAACAT
93040689 TAAAATTTTTAAA
1 TAAAATTTTTAAA
* *
93040702 TAAAATTGTTATA
1 TAAAATTTTTAAA
93040715 -AAAATTTTTAAA
1 TAAAATTTTTAAA
93040727 AGCTTTAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
TAAAATTTTTAAA
Found at i:93040785 original size:14 final size:14
Alignment explanation
Indices: 93040768--93040794 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
93040758 TACATAGAAT
93040768 TTTTTAAATTATTA
1 TTTTTAAATTATTA
93040782 TTTTTAAATTATT
1 TTTTTAAATTATT
93040795 TTTAAAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTAAATTATTA
Found at i:93040839 original size:31 final size:31
Alignment explanation
Indices: 93040781--93040839 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
93040771 TTAAATTATT
*
93040781 ATTTTTAAATTATTTTTAAAGATATTTAACC
1 ATTTTTAAATTATTTTTAAAGAAATTTAACC
*
93040812 ATTTTTAAATTTTTTATTAAA-AAATTTA
1 ATTTTTAAATTATTT-TTAAAGAAATTTA
93040840 TTTAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (31 bp):
ATTTTTAAATTATTTTTAAAGAAATTTAACC
Found at i:93041060 original size:13 final size:13
Alignment explanation
Indices: 93041042--93041076 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
93041032 AAACCTTTTT
93041042 AAAATTTT-TTATA
1 AAAATTTTATT-TA
93041055 AAAATTTTATTTA
1 AAAATTTTATTTA
93041068 AAAATTTTA
1 AAAATTTTA
93041077 ATGTTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 19 0.90
14 2 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
AAAATTTTATTTA
Found at i:93041151 original size:22 final size:21
Alignment explanation
Indices: 93041083--93041151 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 21
93041073 TTTAATGTTT
93041083 AAATATTATTAAAAAATATATTTA
1 AAAT-TTA-TAAAAAATA-ATTTA
*
93041107 ATATTTA-AAAATAAT-ATTTA
1 AAATTTATAAAA-AATAATTTA
93041127 AAATTTATAAAAAATAATTTCA
1 AAATTTATAAAAAATAATTT-A
93041149 AAA
1 AAA
93041152 AATAATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 14 0.36
21 12 0.31
22 7 0.18
23 3 0.08
24 3 0.08
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (21 bp):
AAATTTATAAAAAATAATTTA
Found at i:93041163 original size:36 final size:35
Alignment explanation
Indices: 93041109--93041212 Score: 140
Period size: 36 Copynumber: 3.0 Consensus size: 35
93041099 TATATTTAAT
93041109 ATTT-AAAAATAATATTTAAAATTTATAAAAAATA
1 ATTTCAAAAATAATATTTAAAATTTATAAAAAATA
* * *
93041143 ATTTCAAAAAATAATTTTTAAAATTTATTAGAAATA
1 ATTTC-AAAAATAATATTTAAAATTTATAAAAAATA
* *
93041179 ATTTCAAATAT-ATATTTAAAATTTTTAAAAAATA
1 ATTTCAAAAATAATATTTAAAATTTATAAAAAATA
93041213 TATATTATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
34 23 0.38
35 5 0.08
36 32 0.53
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (35 bp):
ATTTCAAAAATAATATTTAAAATTTATAAAAAATA
Found at i:93041165 original size:14 final size:14
Alignment explanation
Indices: 93041128--93041165 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
93041118 TAATATTTAA
*
93041128 AATTTATAAAAAAT
1 AATTTTTAAAAAAT
*
93041142 AA-TTTCAAAAAAT
1 AATTTTTAAAAAAT
93041155 AATTTTTAAAA
1 AATTTTTAAAA
93041166 TTTATTAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (14 bp):
AATTTTTAAAAAAT
Found at i:93041194 original size:23 final size:22
Alignment explanation
Indices: 93041150--93041237 Score: 56
Period size: 23 Copynumber: 3.8 Consensus size: 22
93041140 ATAATTTCAA
* *
93041150 AAAATAATTTTTAAA-ATTTATT
1 AAAATAA-TTTCAAATATATATT
93041172 AGAAATAATTTCAAATATATATTT
1 A-AAATAATTTCAAATATATA-TT
* *
93041196 AAAAT-TTTTAAAAAATATATATT
1 AAAATAATTT--CAAATATATATT
93041219 ATAAA-ACATTTCAAATATA
1 A-AAATA-ATTTCAAATATA
93041238 CATTTCAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
22 10 0.19
23 24 0.46
24 15 0.29
25 3 0.06
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (22 bp):
AAAATAATTTCAAATATATATT
Found at i:93041270 original size:13 final size:14
Alignment explanation
Indices: 93041252--93041312 Score: 65
Period size: 13 Copynumber: 4.4 Consensus size: 14
93041242 TCAAATTTTT
*
93041252 TAAAATTAAT-AAA
1 TAAAATAAATAAAA
93041265 TAAAATAAATAAAA
1 TAAAATAAATAAAA
*
93041279 T-AAATAAACAAAA
1 TAAAATAAATAAAA
93041292 TAAAATAAGA-AAAA
1 TAAAATAA-ATAAAA
93041306 TATAAAT
1 TA-AAAT
93041313 CTTTAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
13 21 0.50
14 16 0.38
15 5 0.12
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (14 bp):
TAAAATAAATAAAA
Found at i:93041271 original size:9 final size:9
Alignment explanation
Indices: 93041259--93041299 Score: 66
Period size: 9 Copynumber: 4.6 Consensus size: 9
93041249 TTTTAAAATT
93041259 AATAAATAA
1 AATAAATAA
93041268 AATAAATAA
1 AATAAATAA
93041277 AATAAATAA
1 AATAAATAA
93041286 ACA-AAATAA
1 A-ATAAATAA
93041295 AATAA
1 AATAA
93041300 GAAAAATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 1 0.03
9 28 0.93
10 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (9 bp):
AATAAATAA
Found at i:93041375 original size:17 final size:17
Alignment explanation
Indices: 93041318--93041374 Score: 62
Period size: 16 Copynumber: 3.3 Consensus size: 17
93041308 TAAATCTTTA
* *
93041318 AAAAAATTAAAGAAAAAG
1 AAAAAGTTAAA-AAAAAT
93041336 ACAAAAGTTAAAAAAAAT
1 A-AAAAGTTAAAAAAAAT
*
93041354 AAAAAG-TAAAAAAAGT
1 AAAAAGTTAAAAAAAAT
93041370 AAAAA
1 AAAAA
93041375 AACCAGAAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 14 0.40
17 5 0.14
18 7 0.20
19 9 0.26
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAAAGTTAAAAAAAAT
Found at i:93046409 original size:21 final size:21
Alignment explanation
Indices: 93046385--93046442 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
93046375 TGAGGGTCTC
93046385 ACACGCCCGTGTGGCTACCG-A
1 ACACGCCCGTGTGGCT-CCGAA
* *
93046406 ACACGGCTGTGT-GCTCCGAA
1 ACACGCCCGTGTGGCTCCGAA
93046426 ACACATGCCCGTGTGGC
1 ACAC--GCCCGTGTGGC
93046443 ACCCCTATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
19 3 0.10
20 8 0.28
21 10 0.34
22 6 0.21
23 2 0.07
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.17
Consensus pattern (21 bp):
ACACGCCCGTGTGGCTCCGAA
Found at i:93053375 original size:25 final size:25
Alignment explanation
Indices: 93053344--93053394 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
93053334 TTCAGTTTAC
*
93053344 ACTACCTAAAGT-GTTTCAGTAACGT
1 ACTACCTAAAGTGGTCTCA-TAACGT
*
93053369 ACTACCTATAGTGGTCTCATAACGT
1 ACTACCTAAAGTGGTCTCATAACGT
93053394 A
1 A
93053395 GACACAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (25 bp):
ACTACCTAAAGTGGTCTCATAACGT
Found at i:93054609 original size:17 final size:18
Alignment explanation
Indices: 93054575--93054609 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
93054565 CATGTAGCCT
93054575 GCCCGTGTGAGCTCACAC
1 GCCCGTGTGAGCTCACAC
*
93054593 GCCCGTGT-AGCTTACAC
1 GCCCGTGTGAGCTCACAC
93054610 AGCCAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.37, G:0.26, T:0.20
Consensus pattern (18 bp):
GCCCGTGTGAGCTCACAC
Found at i:93056792 original size:13 final size:13
Alignment explanation
Indices: 93056774--93056800 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
93056764 AGAATTGGGC
93056774 TTTGTATTTTTGA
1 TTTGTATTTTTGA
93056787 TTTGTATTTTTGA
1 TTTGTATTTTTGA
93056800 T
1 T
93056801 GAGGATAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.70
Consensus pattern (13 bp):
TTTGTATTTTTGA
Found at i:93066829 original size:18 final size:18
Alignment explanation
Indices: 93066806--93066849 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
93066796 AAAGTCGATT
93066806 GATTCATCTTAGAAGCCG
1 GATTCATCTTAGAAGCCG
93066824 GATTCATCTTAGAAGCCG
1 GATTCATCTTAGAAGCCG
93066842 GATTCATC
1 GATTCATC
93066850 ATCAAGACTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (18 bp):
GATTCATCTTAGAAGCCG
Found at i:93069588 original size:17 final size:18
Alignment explanation
Indices: 93069566--93069614 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
93069556 TCATGGATGC
93069566 ATATATATAAACTAT-TA
1 ATATATATAAACTATATA
* *
93069583 ATATATTATATACTATATG
1 ATATA-TATAAACTATATA
93069602 ATATGATATAAAC
1 ATAT-ATATAAAC
93069615 ATTCTAGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 5 0.19
18 9 0.35
19 11 0.42
20 1 0.04
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (18 bp):
ATATATATAAACTATATA
Found at i:93072699 original size:47 final size:47
Alignment explanation
Indices: 93072639--93072883 Score: 346
Period size: 47 Copynumber: 5.2 Consensus size: 47
93072629 TTAGGATTTT
* ** * * *
93072639 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
* * *
93072686 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
* *
93072733 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
* * *
93072780 ATGTGATGAGTGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
* *
93072827 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
93072874 ATGTGATGAA
1 ATGTGATGAA
93072884 CGTGGAAGTG
Statistics
Matches: 182, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
Found at i:93072760 original size:23 final size:23
Alignment explanation
Indices: 93072687--93072760 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
93072677 GAATGGCAAA
93072687 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
93072710 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
93072734 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
93072757 TGTG
1 TGTG
93072761 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:93072833 original size:22 final size:22
Alignment explanation
Indices: 93072805--93072880 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
93072795 ACATGTATAT
93072805 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
93072827 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
93072849 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
93072874 ATGTGAT
1 ATGTGAT
93072881 GAACGTGGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:93072913 original size:94 final size:95
Alignment explanation
Indices: 93072670--93072917 Score: 330
Period size: 94 Copynumber: 2.6 Consensus size: 95
93072660 ATATATGAGC
* * *
93072670 TAAGGCCGAATGGCAAATGTGATGAA-TGTGAACATGCAT-T-TGTGTGCTAAGGCCGAATGGCA
1 TAAGGCCGAATGGCCAATGTGATGAAGTG-GAACATGTATATATGTG-GATAAGGCCGAATGGCA
* *
93072732 AATGTGATGAATGTGAACATGCATTTGTGTGC
64 AATGTGATGAATGTGAACATGCATATGTGTGA
*
93072764 TAAGGCCGAATGGCCAATGTGATG-AGTGTGAACATGTATATATGT-GATAAGGCCGAATGGCCA
1 TAAGGCCGAATGGCCAATGTGATGAAGTG-GAACATGTATATATGTGGATAAGGCCGAATGGCAA
93072827 ATGTGATGAATGTGAACATGCATATGTGTGA
65 ATGTGATGAATGTGAACATGCATATGTGTGA
* **
93072858 TAAGGCCGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGGGAA-GCCGAATGG
1 TAAGGCCGAATGGCCAATGTGATGAA-GTGGAACATGTATATATGTGGATAAGGCCGAATGG
93072918 TTAATGCGAA
Statistics
Matches: 139, Mismatches: 9, Indels: 12
0.87 0.06 0.08
Matches are distributed among these distances:
93 1 0.01
94 124 0.89
95 8 0.06
96 6 0.04
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (95 bp):
TAAGGCCGAATGGCCAATGTGATGAAGTGGAACATGTATATATGTGGATAAGGCCGAATGGCAAA
TGTGATGAATGTGAACATGCATATGTGTGA
Found at i:93072957 original size:46 final size:46
Alignment explanation
Indices: 93072897--93072987 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
93072887 GGAAGTGTAT
* * * *
93072897 ATATGTGGGGAAGCCGAATGGTTAATGCGA-AATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAGAA-ATGTATGAGATGG
* *
93072943 ATATGTGGTAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATG
93072988 TGTATATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 36 0.95
47 2 0.05
ACGTcount: A:0.34, C:0.07, G:0.33, T:0.26
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATGG
Found at i:93074696 original size:18 final size:18
Alignment explanation
Indices: 93074673--93074708 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
93074663 ACTAAACCAT
93074673 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
93074691 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
93074709 TACTTGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.61, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:93075121 original size:19 final size:18
Alignment explanation
Indices: 93075097--93075133 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
93075087 TTATGTTTCA
93075097 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
93075116 TATTATTATATATTTATT
1 TATTATTATATATTTATT
93075134 ATGAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:93075123 original size:63 final size:64
Alignment explanation
Indices: 93074982--93075124 Score: 179
Period size: 63 Copynumber: 2.2 Consensus size: 64
93074972 TTAACCCCTT
* * *
93074982 TTTTTATTTTTGTTATTTTACTGTTAAATTAATTAATTTGAGCTTTGTTCTCATTATTTTTATA
1 TTTTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTTGTTCTCATTATTATTATA
*
93075046 TTTGTT-TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTT-TCA-TATTATTAT
1 TTT-TTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTT-TGTTCTCATTATTATTAT
93075106 A
64 A
93075107 TTATTTATTTATTATTAT
1 TT-TTTATTT-TTATTAT
93075125 ATATTTATTA
Statistics
Matches: 70, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
61 13 0.19
62 9 0.13
63 31 0.44
64 15 0.21
65 2 0.03
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.64
Consensus pattern (64 bp):
TTTTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTTGTTCTCATTATTATTATA
Found at i:93075124 original size:14 final size:14
Alignment explanation
Indices: 93075105--93075135 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
93075095 CATATTATTA
*
93075105 TATTATTTATTTAT
1 TATTATATATTTAT
93075119 TATTATATATTTAT
1 TATTATATATTTAT
93075133 TAT
1 TAT
93075136 GAAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:93075364 original size:21 final size:21
Alignment explanation
Indices: 93075331--93075381 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
93075321 TATTATCCCC
** *
93075331 CATATTTAATGTTATCGTCAA
1 CATATTTTTTGTTATCATCAA
* *
93075352 CATATTTTTTGTTATTATCAT
1 CATATTTTTTGTTATCATCAA
93075373 CATATTTTT
1 CATATTTTT
93075382 AATATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (21 bp):
CATATTTTTTGTTATCATCAA
Found at i:93075436 original size:20 final size:17
Alignment explanation
Indices: 93075422--93075455 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
93075412 TTTATTACAT
93075422 TATTGTGTTTATTATTAC
1 TATTGT-TTTATTATTAC
*
93075440 TGTTGTTTTATTATTA
1 TATTGTTTTATTATTA
93075456 ATTTCTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.21, C:0.03, G:0.12, T:0.65
Consensus pattern (17 bp):
TATTGTTTTATTATTAC
Found at i:93082181 original size:17 final size:18
Alignment explanation
Indices: 93082130--93082181 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 18
93082120 TTATTTTCAT
*
93082130 ATTATTTGTTAATATTTTC
1 ATTATTT-TAAATATTTTC
* *
93082149 ATTATTTTGACT-TTTTC
1 ATTATTTTAAATATTTTC
93082166 A-TATTTTAAATATTTT
1 ATTATTTTAAATATTTT
93082182 TAATATAGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 8 0.29
17 10 0.36
18 3 0.11
19 7 0.25
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (18 bp):
ATTATTTTAAATATTTTC
Found at i:93087923 original size:22 final size:21
Alignment explanation
Indices: 93087898--93087955 Score: 62
Period size: 23 Copynumber: 2.6 Consensus size: 21
93087888 ATAATTTATT
93087898 TAATTAAATAATATATTAATAA
1 TAATTAAATAATAT-TTAATAA
*
93087920 TAATTAAATTAGATATTTTATAA
1 TAATTAAA-TA-ATATTTAATAA
* *
93087943 TATTTTAATAATA
1 TAATTAAATAATA
93087956 AAATGATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 10 0.32
23 14 0.45
24 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
TAATTAAATAATATTTAATAA
Found at i:93087945 original size:10 final size:11
Alignment explanation
Indices: 93087904--93087955 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
93087894 TATTTAATTA
*
93087904 AATAATATATT
1 AATAATATTTT
* *
93087915 AATAATAATTA
1 AATAATATTTT
93087926 AATTAGATATTTT
1 AA-TA-ATATTTT
93087939 -ATAATATTTT
1 AATAATATTTT
93087949 AATAATA
1 AATAATA
93087956 AAATGATAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
10 7 0.21
11 18 0.55
12 3 0.09
13 5 0.15
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (11 bp):
AATAATATTTT
Found at i:93093533 original size:13 final size:12
Alignment explanation
Indices: 93093503--93093533 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
93093493 TTAAATTATC
93093503 AATTAATTTTTA
1 AATTAATTTTTA
93093515 AATTAATTTTTA
1 AATTAATTTTTA
93093527 AACTTAA
1 AA-TTAA
93093534 AAGAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (12 bp):
AATTAATTTTTA
Found at i:93095903 original size:19 final size:18
Alignment explanation
Indices: 93095858--93095904 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
93095848 TTTTTTCTTC
* *
93095858 TTTTTTTTTGGGGGTTAG
1 TTTTTTTTTTGGGGTAAG
*
93095876 GTTTTTTTTTGGGGTAAG
1 TTTTTTTTTTGGGGTAAG
93095894 TTTTTCTTTTT
1 TTTTT-TTTTT
93095905 TTTTTTTCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.06, C:0.02, G:0.26, T:0.66
Consensus pattern (18 bp):
TTTTTTTTTTGGGGTAAG
Found at i:93095910 original size:13 final size:14
Alignment explanation
Indices: 93095894--93095925 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
93095884 TTGGGGTAAG
93095894 TTTTTCTTT-TTTT
1 TTTTTCTTTGTTTT
93095907 TTTTTCTTTGTTTT
1 TTTTTCTTTGTTTT
93095921 TTTTT
1 TTTTT
93095926 TGGGTTAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (14 bp):
TTTTTCTTTGTTTT
Found at i:93096960 original size:74 final size:72
Alignment explanation
Indices: 93096815--93097137 Score: 320
Period size: 74 Copynumber: 4.5 Consensus size: 72
93096805 AATTAAAAGA
* * * *
93096815 CTCAACTCACCTCTCGTAATATGAATTGACTCTTTAAGA-T--A-GAATTTGAAAATACCTTAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGA-T-TTT-AGATTAAATGAA-TTGAAATTACCTCAGC
*
93096876 GTGCCGC-AAGG
62 GTGCC-CTGAGG
* *
93096887 CTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTAAAT--GAATTGAAATTACCTCAGCGT
**
93096952 GCCCCAAGG
64 GCCCTGAGG
* * *
93096961 TTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTAAAT--GAATTGAAATTACCTCAGCGT
**
93097026 GCCCCAAGG
64 GCCCTGAGG
* * * *
93097035 TTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA--AACATGAATTGAAATTACC-CAACGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTAA-ATGAATTGAAATTACCTCAGCGTG
* *
93097097 TCTTGAGG
65 CCCTGAGG
93097105 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
93097138 CTTGGAAACA
Statistics
Matches: 226, Mismatches: 17, Indels: 18
0.87 0.07 0.07
Matches are distributed among these distances:
69 3 0.01
70 45 0.20
71 15 0.07
72 28 0.12
73 3 0.01
74 129 0.57
75 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (72 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTAAATGAATTGAAATTACCTCAGCGTGC
CCTGAGG
Found at i:93097279 original size:71 final size:71
Alignment explanation
Indices: 93097163--93097296 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
93097153 TAAAAAGCAG
* * *
93097163 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
93097228 AAACAT
66 AAACAT
* * *
93097234 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
93097297 CTTGGAAACA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:93097315 original size:158 final size:159
Alignment explanation
Indices: 93097006--93097455 Score: 730
Period size: 158 Copynumber: 2.8 Consensus size: 159
93096996 ATTTAATGGG
* ** *
93097006 AATTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* *
93097071 AACATGAATTGAAATTACC-CAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
93097135 TTTCTTGGAAACATGAACTAAAAAGCAGA
131 TTTCTTGGAAACATGAACTAAAAAGCAGA
93097164 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
93097229 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
93097294 TTTCTTGGAAACATGAA-TAAAAAGCAGA
131 TTTCTTGGAAACATGAACTAAAAAGCAGA
93097322 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-A
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* * **
93097386 TTTA-ATAGGAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGC
66 --AACATA--AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
93097449 TGCTTTT
127 TGATTTT
93097456 TGAAACATAA
Statistics
Matches: 276, Mismatches: 11, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
157 1 0.00
158 156 0.57
159 99 0.36
160 20 0.07
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (159 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAACATGAACTAAAAAGCAGA
Found at i:93097442 original size:72 final size:70
Alignment explanation
Indices: 93097321--93097526 Score: 272
Period size: 71 Copynumber: 2.9 Consensus size: 70
93097311 TAAAAAGCAG
* * *
93097321 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-
1 AAATTGAAATTACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
*
93097385 ATTTA-AT
65 A--AACAT
*
93097392 AGGAATTGAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTTT
1 A--AATTGAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
93097457 GAAACAT
64 GAAACAT
* **
93097464 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
93097527 CTTGGAAAAC
Statistics
Matches: 121, Mismatches: 9, Indels: 10
0.86 0.06 0.07
Matches are distributed among these distances:
70 20 0.17
71 39 0.32
72 38 0.31
73 24 0.20
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (70 bp):
AAATTGAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
AACAT
Found at i:93097469 original size:230 final size:233
Alignment explanation
Indices: 93097164--93097616 Score: 840
Period size: 230 Copynumber: 2.0 Consensus size: 233
93097154 AAAAAGCAGA
* *
93097164 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
93097229 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
93097294 TTTCTTGG-AAACATGAA-TAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
93097357 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
196 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
* *
93097395 AATTGAAATTACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
93097459 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
93097524 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGGAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
93097589 TCACTTCTCGCAATATGAGTTGATTTTT
196 TCACTTCTCGCAATATGAGTTGATTTTT
93097617 GGAAAAAAAC
Statistics
Matches: 215, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
230 110 0.51
231 32 0.15
232 73 0.34
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (233 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
Found at i:93097508 original size:71 final size:69
Alignment explanation
Indices: 93097321--93097526 Score: 270
Period size: 72 Copynumber: 2.9 Consensus size: 69
93097311 TAAAAAGCAG
* * *
93097321 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTA
1 AAATTGAAATTACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTA
*
93097386 TTTAAT
65 -TAAAT
* *
93097392 AGGAATTGAAATTACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTTT
1 A--AATTGAAATTACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
93097457 GA-AACAT
64 -ATAA-AT
* *
93097464 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAATTACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
93097527 CTTGGAAAAC
Statistics
Matches: 120, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
70 20 0.17
71 39 0.32
72 40 0.33
73 21 0.17
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (69 bp):
AAATTGAAATTACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTAT
AAAT
Found at i:93105780 original size:74 final size:74
Alignment explanation
Indices: 93105651--93106318 Score: 342
Period size: 71 Copynumber: 8.8 Consensus size: 74
93105641 GCTCCGCATG
* * *
93105651 GAAA-TACCTTAGCGTGCCGCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATTTA
1 GAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTA
93105715 ATGGGAATT
66 ATGGGAATT
* *
93105724 GAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTA
1 GAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTA
93105789 ATGGGAATT
66 ATGGGAATT
* * * *
93105798 GAAATTACCTCAGCAGCGTG-CCCAAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA-
1 GAAATTACCT---CAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGAT
*
93105861 -AACAT--GAATT
63 TTA-ATGGGAATT
* * * *** *
93105871 GAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGGAA
1 GAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-TT--AG
* * *** **
93105936 ACATGAACTAAAAAGCA
61 A-TTTAA-TGGGAA-TT
** * * *
93105953 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTT
1 GAAA-T-----TACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTA
* *
93106018 GA--AACAT--AAATT
60 GATTTA-ATGGGAATT
* * *** * *
93106030 GAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAA
1 GAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-TT--AG
* * *** **
93106095 ACATGAACTAAAAAGCA
61 A-TTTAA-TGGGAA-TT
* ** *
93106112 GAAATTGAAAATACCTCATCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-
1 GAAA-T-----TACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTA
* *
93106176 TATTTAATAGGAATT
60 GATTTAATGGGAATT
* * * * * *
93106191 GAAATTACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTCGCAATATGAGCTGCTTTTTGA--AA
1 GAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTA
*
93106254 CAT--AAATT
66 -ATGGGAATT
* * *** *
93106262 GAAATTACCTCAACGTGTCTTGAGGCTCAACTCACC-CTCGCAATATGAGCTGATTTT
1 GAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93106319 CTTGGAAAAC
Statistics
Matches: 479, Mismatches: 71, Indels: 93
0.74 0.11 0.14
Matches are distributed among these distances:
70 26 0.05
71 108 0.23
72 1 0.00
73 71 0.15
74 80 0.17
75 2 0.00
76 44 0.09
77 11 0.02
78 6 0.01
79 8 0.02
80 6 0.01
81 9 0.02
82 9 0.02
83 3 0.01
85 4 0.01
86 4 0.01
88 87 0.18
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (74 bp):
GAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTA
ATGGGAATT
Found at i:93105854 original size:76 final size:73
Alignment explanation
Indices: 93105651--93105928 Score: 332
Period size: 74 Copynumber: 3.8 Consensus size: 73
93105641 GCTCCGCATG
* * * *
93105651 GAAA-TACCTTAGCGTGCCGCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATTTA
1 GAAATTACCTCAGCGTGCC-CAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTA
93105715 ATGGGAATT
65 ATGGGAATT
93105724 GAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTA
1 GAAATTACCTCAGCGTG-CCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTA
93105789 ATGGGAATT
65 ATGGGAATT
* *
93105798 GAAATTACCTCAGCAGCGTGCCCAAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGA--
1 GAAATTACCT---CAGCGTGCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATT
*
93105861 AACAT--GAATT
63 TA-ATGGGAATT
* * *** * *
93105871 GAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTACCTCAGCGTG-CCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTT
93105929 CTTGGAAACA
Statistics
Matches: 183, Mismatches: 15, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
70 6 0.03
71 34 0.19
73 18 0.10
74 73 0.40
75 4 0.02
76 41 0.22
77 7 0.04
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (73 bp):
GAAATTACCTCAGCGTGCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAA
TGGGAATT
Found at i:93106115 original size:159 final size:159
Alignment explanation
Indices: 93105811--93106248 Score: 684
Period size: 159 Copynumber: 2.7 Consensus size: 159
93105801 ATTACCTCAG
* * * *
93105811 CAGCGTGCCC-AAGGTTCAACTCACTTCTCGCAATATAAGTTGATTTTTGAAACATGAATTGAAA
1 CAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAA
* *
93105875 TTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGGAAACAT
66 TTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAACAT
93105940 GAACTAAAAAGCAGAAATTGAAAATACCT
131 GAACTAAAAAGCAGAAATTGAAAATACCT
*
93105969 CAGCGTGCCCTGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGAAACATAAATTGAAA
1 CAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAA
93106034 TTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAACAT
66 TTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAACAT
93106099 GAACTAAAAAGCAGAAATTGAAAATACCT
131 GAACTAAAAAGCAGAAATTGAAAATACCT
* *
93106128 CATCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-ATTTA-ATAGGAATT
1 CAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA--AACATA--AATT
* * ** * *
93106191 GAAATTACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTCGCAATATGAGCTGCTTTT
62 GAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
93106249 TGAAACATAA
Statistics
Matches: 259, Mismatches: 16, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
158 11 0.04
159 191 0.74
160 1 0.00
161 56 0.22
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (159 bp):
CAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAA
TTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAACAT
GAACTAAAAAGCAGAAATTGAAAATACCT
Found at i:93106218 original size:232 final size:231
Alignment explanation
Indices: 93105955--93106407 Score: 782
Period size: 232 Copynumber: 2.0 Consensus size: 231
93105945 AAAAAGCAGA
* * * *
93105955 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
93106020 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACC-CTCGCAATATGAGCTGAT
*
93106085 TTTCTTGG-AAACATGAACTAAAAAGCAGAAATTGAAAATACCTCATCGTGCCCTGAGGCTCAAC
130 TTTCTTGGAAAACATGAACTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
93106149 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
195 TCACTTCTCGCAATATGAGTT-ATTTTTATTTAATAGG
* * *
93106187 AATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTCGCAATATGAGCTGCTTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
93106252 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCCTCGCAATATGAGCTGATT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCCTCGCAATATGAGCTGATT
* *
93106317 TTCTTGGAAAACATGAATTAAAAAGCAGAAATTGGAAATACCTCAGCGTGCCCTGAGGCTCAACT
131 TTCTTGGAAAACATGAACTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACT
*
93106382 CACTTTTCGCAATATGAGTTATTTTT
196 CACTTCTCGCAATATGAGTTATTTTT
93106408 GGAAAAAAAC
Statistics
Matches: 209, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
231 32 0.15
232 177 0.85
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (231 bp):
AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCCTCGCAATATGAGCTGATT
TTCTTGGAAAACATGAACTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACT
CACTTCTCGCAATATGAGTTATTTTTATTTAATAGG
Found at i:93106233 original size:73 final size:71
Alignment explanation
Indices: 93106113--93106318 Score: 256
Period size: 73 Copynumber: 2.9 Consensus size: 71
93106103 TAAAAAGCAG
* * * *
93106113 AAATTGAAAATACCTCATCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-
1 AAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
*
93106177 ATTTA-AT
66 A--AACAT
* * * *
93106184 AGGAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTCGCAATATGAGCTGCTTTT
1 A--AATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
93106249 TGAAACAT
64 TGAAACAT
* *
93106257 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACC-CTCGCAATATGAGCTGATTTT
1 AAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
93106319 CTTGGAAAAC
Statistics
Matches: 117, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
70 20 0.17
71 36 0.31
72 1 0.01
73 59 0.50
74 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (71 bp):
AAATTGAAATTACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:93112000 original size:20 final size:20
Alignment explanation
Indices: 93111963--93112000 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
93111953 TAAAACTGAG
*
93111963 AATATTAAAACAACAATATT
1 AATATTAAAACAAAAATATT
93111983 AATATTACAAA-AAAAATA
1 AATATTA-AAACAAAAATA
93112001 GAAATGATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (20 bp):
AATATTAAAACAAAAATATT
Found at i:93112631 original size:20 final size:21
Alignment explanation
Indices: 93112599--93112639 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
93112589 TAACATTAAG
*
93112599 AATATATATATATATAATATA
1 AATATATATATATACAATATA
93112620 AATATA-ATATATACAATATA
1 AATATATATATATACAATATA
93112640 CACATATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
AATATATATATATACAATATA
Found at i:93113476 original size:16 final size:17
Alignment explanation
Indices: 93113439--93113476 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
93113429 TTTTTCTTCT
*
93113439 TTTTTTTTGGGGGTTAG
1 TTTTTTTTGGGGGTAAG
*
93113456 GTTTTTTT-GGGGTAAG
1 TTTTTTTTGGGGGTAAG
93113472 TTTTT
1 TTTTT
93113477 CTTTTTCTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.61
Consensus pattern (17 bp):
TTTTTTTTGGGGGTAAG
Found at i:93113490 original size:15 final size:15
Alignment explanation
Indices: 93113472--93113506 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
93113462 TTGGGGTAAG
93113472 TTTTTCTTT-TTCTTT
1 TTTTTCTTTGTT-TTT
93113487 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
93113502 TTTTT
1 TTTTT
93113507 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:93114555 original size:73 final size:74
Alignment explanation
Indices: 93114440--93114717 Score: 368
Period size: 73 Copynumber: 3.8 Consensus size: 74
93114430 AAGATAGAAT
* * * *
93114440 TTGAAAATACCTTAGCGTGCCGCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATT
1 TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT
93114505 TAATGGGAA
66 TAATGGGAA
* *
93114514 TTGAAATTACCTCAGCGTG-CCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATT
1 TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT
93114578 TAATGGGAA
66 TAATGGGAA
* * *
93114587 TTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA--
1 TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT
*
93114650 AACAT--GAA
66 TA-ATGGGAA
* * * ***
93114658 TTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93114718 CTTGGAAACA
Statistics
Matches: 186, Mismatches: 16, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
71 55 0.30
72 1 0.01
73 71 0.38
74 59 0.32
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (74 bp):
TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT
TAATGGGAA
Found at i:93114700 original size:71 final size:71
Alignment explanation
Indices: 93114395--93114717 Score: 343
Period size: 73 Copynumber: 4.5 Consensus size: 71
93114385 AATTAAAAGA
* * * *
93114395 CTCAACTCACCTCTCGTAATATGAATTGACTCTTTAAGAT--A--GAATTTGAAAATACCTTAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGA-T-TTT-AGATAAATGGAA-TTGAAATTACCTCAGC
93114456 GTGCCGCAAGG
62 GTGCC-CAAGG
* *
93114467 CTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGA-TAAAT-GGAATTGAAATTACCTCAGCGT
93114532 GCCCAAGG
64 GCCCAAGG
* * *
93114540 TTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGA-TAAAT-GGAATTGAAATTACCTCAGCGT
93114605 GCCCCAAGG
64 G-CCCAAGG
* * * * *
93114614 TTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA-AACAT-GAATTGAAATTACCCCAACGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATAA-ATGGAATTGAAATTACCTCAGCGTG
***
93114677 TCTTGAGG
65 -CCCAAGG
93114685 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
93114718 CTTGGAAACA
Statistics
Matches: 225, Mismatches: 18, Indels: 17
0.87 0.07 0.07
Matches are distributed among these distances:
69 3 0.01
70 4 0.02
71 56 0.25
72 28 0.12
73 70 0.31
74 61 0.27
75 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (71 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATAAATGGAATTGAAATTACCTCAGCGTGC
CCAAGG
Found at i:93114859 original size:71 final size:71
Alignment explanation
Indices: 93114743--93115107 Score: 286
Period size: 71 Copynumber: 4.9 Consensus size: 71
93114733 TAAAAAGCAG
* * *
93114743 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
93114808 AAACAT
66 AAACAT
* * *
93114814 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTT-T
93114879 TGGAAACAT
64 T-GAAACAT
* * ** * ** * * * * *
93114888 GAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATA
1 AAATTGAAAA-T---ACCTCAACGTGCC-CTGAG-G--CTCA-ACTC-A--C-C-TCTCGCAATA
* *
93114953 TGAGTTGATTTTT-ATTTA-AT
52 TGAGCTGATTTTTGA--AACAT
* * *
93114973 AGGAATTGAAATTACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTT
1 A--AATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
93115037 TGAAACAT
64 TGAAACAT
* * *
93115045 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
93115108 CTTGGAAAAC
Statistics
Matches: 227, Mismatches: 43, Indels: 48
0.71 0.14 0.15
Matches are distributed among these distances:
70 21 0.09
71 90 0.40
72 27 0.12
73 4 0.02
74 15 0.07
75 1 0.00
76 1 0.00
77 3 0.01
78 9 0.04
79 2 0.01
80 2 0.01
81 2 0.01
82 4 0.02
83 9 0.04
84 2 0.01
85 2 0.01
86 5 0.02
87 11 0.05
88 17 0.07
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:93114874 original size:159 final size:159
Alignment explanation
Indices: 93114585--93115036 Score: 721
Period size: 159 Copynumber: 2.8 Consensus size: 159
93114575 ATTTAATGGG
* ** *
93114585 AATTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* * *
93114650 AACATGAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
93114715 TTTCTTGGAAACATGAACTAAAAAGCAGA
131 TTTCTTGGAAACATGAACTAAAAAGCAGA
93114744 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
93114809 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
* *
93114874 TTTCTTGGAAACATGAATTAAAAAGTAGA
131 TTTCTTGGAAACATGAACTAAAAAGCAGA
93114903 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-A
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* * **
93114967 TTTA-ATAGGAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGC
66 --AACATA--AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
93115030 TGCTTTT
127 TGATTTT
93115037 TGAAACATAA
Statistics
Matches: 275, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
158 1 0.00
159 216 0.79
160 38 0.14
161 20 0.07
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (159 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAACATGAACTAAAAAGCAGA
Found at i:93115050 original size:231 final size:233
Alignment explanation
Indices: 93114744--93115197 Score: 840
Period size: 231 Copynumber: 2.0 Consensus size: 233
93114734 AAAAAGCAGA
* *
93114744 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
93114809 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
93114874 TTTCTTGG-AAACATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
93114938 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
196 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
* *
93114976 AATTGAAATTACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
93115040 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
93115105 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGGAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
93115170 TCACTTCTCGCAATATGAGTTGATTTTT
196 TCACTTCTCGCAATATGAGTTGATTTTT
93115198 GGAAAAAAAC
Statistics
Matches: 215, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
231 110 0.51
232 105 0.49
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (233 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
Found at i:93127835 original size:14 final size:14
Alignment explanation
Indices: 93127805--93127837 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
93127795 CATTAAGAAT
93127805 ATATATATATATAA
1 ATATATATATATAA
93127819 ATATA-ATATATACA
1 ATATATATATATA-A
93127833 ATATA
1 ATATA
93127838 CACATATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATATATATATAA
Found at i:93128665 original size:18 final size:18
Alignment explanation
Indices: 93128633--93128679 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
93128623 TTTTTTCTTC
*
93128633 TTTTTTTTTGGGGGGTTAGG
1 TTTTTTTTT-GGGGG-TAAG
93128653 TTTTTTTTT-GGGGTAAG
1 TTTTTTTTTGGGGGTAAG
93128670 TTTTTCTTTT
1 TTTTT-TTTT
93128680 TCTTTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 8 0.32
18 8 0.32
20 9 0.36
ACGTcount: A:0.06, C:0.02, G:0.28, T:0.64
Consensus pattern (18 bp):
TTTTTTTTTGGGGGTAAG
Found at i:93128688 original size:15 final size:15
Alignment explanation
Indices: 93128670--93128704 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
93128660 TTGGGGTAAG
93128670 TTTTTCTTT-TTCTTT
1 TTTTTCTTTGTT-TTT
93128685 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
93128700 TTTTT
1 TTTTT
93128705 GGGTTAGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:93129157 original size:13 final size:14
Alignment explanation
Indices: 93129141--93129178 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
93129131 ATAAATGATA
93129141 TTTATATTTTA-TT
1 TTTATATTTTACTT
*
93129154 TTTATCTTTTACTT
1 TTTATATTTTACTT
93129168 TTTAATATTTT
1 TTT-ATATTTT
93129179 TATGTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 10 0.48
14 5 0.24
15 6 0.29
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATATTTTACTT
Found at i:93133728 original size:43 final size:43
Alignment explanation
Indices: 93133680--93133843 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
93133670 TACCGAGATA
* *
93133680 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTG-TATT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATT
** * * *
93133722 GTGATTATGTATAAGACCATGTCTGGGACATTGGCATCGTTAAT
1 -TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATT
* * * * *
93133766 CGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATT
* * *
93133809 TGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCAT
93133844 TGTGCAAGCT
Statistics
Matches: 99, Mismatches: 21, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
42 6 0.06
43 90 0.91
44 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATT
Found at i:93134092 original size:29 final size:29
Alignment explanation
Indices: 93134059--93134118 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
93134049 TGCCAAAATG
93134059 TGTTTATTTGGCTATAATGAGGTATGAAT
1 TGTTTATTTGGCTATAATGAGGTATGAAT
93134088 TGTTTATTTGGCTATAATGAGGTATGAAT
1 TGTTTATTTGGCTATAATGAGGTATGAAT
93134117 TG
1 TG
93134119 CATGACATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.27, C:0.03, G:0.25, T:0.45
Consensus pattern (29 bp):
TGTTTATTTGGCTATAATGAGGTATGAAT
Found at i:93135929 original size:15 final size:14
Alignment explanation
Indices: 93135873--93135943 Score: 56
Period size: 15 Copynumber: 4.9 Consensus size: 14
93135863 TTATTATGTT
*
93135873 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
93135887 T-T-TTGTTATTCTAA
1 TCTATTTTTATT-T-A
*
93135901 TACTATTATTATTTA
1 T-CTATTTTTATTTA
93135916 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
*
93135931 TCTATTTATATTT
1 TCTATTTTTATTT
93135944 CTACTATTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
12 6 0.13
13 2 0.04
14 14 0.30
15 15 0.33
16 2 0.04
17 7 0.15
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:93135942 original size:29 final size:28
Alignment explanation
Indices: 93135873--93135943 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 28
93135863 TTATTATGTT
93135873 TCTATTTATATTTATTTTGTTATTCTAA
1 TCTATTTATATTTATTTTGTTATTCTAA
*
93135901 TACTA-TTATTATTTATCTAATTTTTATT-T-A
1 T-CTATTTA-TATTTAT-T--TTGTTATTCTAA
93135931 TCTATTTATATTT
1 TCTATTTATATTT
93135944 CTACTATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
28 4 0.11
29 18 0.50
30 6 0.17
31 1 0.03
32 7 0.19
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (28 bp):
TCTATTTATATTTATTTTGTTATTCTAA
Found at i:93135968 original size:15 final size:17
Alignment explanation
Indices: 93135940--93135977 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
93135930 ATCTATTTAT
93135940 ATTTCTACTATTATTAA
1 ATTTCTACTATTATTAA
*
93135957 ATTTCTA-T-TTATTAT
1 ATTTCTACTATTATTAA
93135972 ATTTCT
1 ATTTCT
93135978 GTTTCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 12 0.60
16 1 0.05
17 7 0.35
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTCTACTATTATTAA
Found at i:93136129 original size:3 final size:3
Alignment explanation
Indices: 93136121--93136296 Score: 132
Period size: 3 Copynumber: 58.7 Consensus size: 3
93136111 TTTAAAACTT
93136121 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
93136169 -TA TT- TCTA CGTA CTA -TA TT- TCTA TT- TATA TTTA TGTA TTA ATA
1 TTA TTA T-TA -TTA TTA TTA TTA T-TA TTA T-TA -TTA T-TA TTA TTA
* * * * *
93136212 TCA TTA TT- TTT TTA TT- TTT TTA TTA TTA TCA TTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
93136258 GTA CTA TTA TTA TTT TCTA TTA TTA TTA CTA TTA TTA TT
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TT
93136297 TATAGTATAT
Statistics
Matches: 140, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
2 11 0.08
3 118 0.84
4 10 0.07
5 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Done.