Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 314 of 328
Found at i:93139149 original size:2 final size:2
Alignment explanation
Indices: 93139142--93139176 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
93139132 GTATCTCATC
* *
93139142 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
93139177 CATTACTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (2 bp):
AT
Found at i:93139164 original size:14 final size:14
Alignment explanation
Indices: 93139145--93139176 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
93139135 TCTCATCATA
93139145 TATATATATATATG
1 TATATATATATATG
93139159 TATATATATATATG
1 TATATATATATATG
93139173 TATA
1 TATA
93139177 CATTACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TATATATATATATG
Found at i:93141304 original size:18 final size:19
Alignment explanation
Indices: 93141281--93141324 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
93141271 TCATATTTAT
*
93141281 TTTAATTAAATTGAT-TAA
1 TTTAATTAAATTGATCAAA
* *
93141299 TTTAATTTACTTGATCAAA
1 TTTAATTAAATTGATCAAA
93141318 TTTAATT
1 TTTAATT
93141325 TTCCCCAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (19 bp):
TTTAATTAAATTGATCAAA
Found at i:93143926 original size:13 final size:12
Alignment explanation
Indices: 93143908--93143952 Score: 58
Period size: 13 Copynumber: 3.8 Consensus size: 12
93143898 AGGTGGTTGT
93143908 TTTTCTTTTTAAA
1 TTTTCTTTTT-AA
93143921 TTTTCTTTTTAA
1 TTTTCTTTTTAA
*
93143933 TTTTC-CTTT-A
1 TTTTCTTTTTAA
93143943 TTTTCTTTTT
1 TTTTCTTTTT
93143953 CCCAAATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 6 0.21
11 6 0.21
12 7 0.24
13 10 0.34
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTTTTTAA
Found at i:93149142 original size:2 final size:2
Alignment explanation
Indices: 93149135--93149174 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
93149125 ACTAACCAAC
93149135 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93149175 CTTAATAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93155285 original size:14 final size:16
Alignment explanation
Indices: 93155248--93155283 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
93155238 ATTGGTTTAG
93155248 TTTTTTAATAAGATTT
1 TTTTTTAATAAGATTT
*
93155264 TTTTTTAATTA-ATTT
1 TTTTTTAATAAGATTT
93155279 TTTTT
1 TTTTT
93155284 AAAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (16 bp):
TTTTTTAATAAGATTT
Found at i:93155565 original size:11 final size:11
Alignment explanation
Indices: 93155549--93155581 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
93155539 AATGTTTTCT
93155549 AATAAATTTAA
1 AATAAATTTAA
93155560 AATAAATTTAA
1 AATAAATTTAA
93155571 AA-AAA-TTAA
1 AATAAATTTAA
93155580 AA
1 AA
93155582 AACTTTATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 6 0.27
10 3 0.14
11 13 0.59
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AATAAATTTAA
Found at i:93158787 original size:24 final size:24
Alignment explanation
Indices: 93158755--93158803 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
93158745 CATCTTTCTT
*
93158755 CGATCTATTTTACAGATATTTTGC
1 CGATCTATTTTACAAATATTTTGC
93158779 CGATCTATTTTACAAATATTTTGC
1 CGATCTATTTTACAAATATTTTGC
93158803 C
1 C
93158804 CTCACGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.10, T:0.45
Consensus pattern (24 bp):
CGATCTATTTTACAAATATTTTGC
Found at i:93160923 original size:24 final size:26
Alignment explanation
Indices: 93160893--93160946 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
93160883 TTTTGTATAT
*
93160893 ATTTTTA-AAA-ATATAAATTTTAGA
1 ATTTTTACAAACATATAAATTTTAAA
* *
93160917 ATTTTTACAAACATTTTAATTTTAAA
1 ATTTTTACAAACATATAAATTTTAAA
93160943 ATTT
1 ATTT
93160947 ATTTTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 7 0.28
25 3 0.12
26 15 0.60
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (26 bp):
ATTTTTACAAACATATAAATTTTAAA
Found at i:93160977 original size:19 final size:18
Alignment explanation
Indices: 93160929--93160976 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 18
93160919 TTTTACAAAC
93160929 ATTTTAATTTTAAAATTT
1 ATTTTAATTTTAAAATTT
93160947 ATTTTAAATTTTGAAAA-TT
1 ATTTT-AATTTT-AAAATTT
93160966 ATTTTAATTTT
1 ATTTTAATTTT
93160977 TTTTATAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 11 0.39
19 13 0.46
20 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTTAATTTTAAAATTT
Found at i:93163294 original size:17 final size:18
Alignment explanation
Indices: 93163257--93163294 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
93163247 GAAATCATGG
*
93163257 TTTAGGTTGAAAATTTGA
1 TTTAGGTTGAAAATGTGA
93163275 TTTAGGTTGAAAA-GTGA
1 TTTAGGTTGAAAATGTGA
93163292 TTT
1 TTT
93163295 TCAACGTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.45
Consensus pattern (18 bp):
TTTAGGTTGAAAATGTGA
Found at i:93165970 original size:16 final size:16
Alignment explanation
Indices: 93165935--93165972 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
93165925 AAATGGTAAT
*
93165935 ATTT-TATATTATATT
1 ATTTATATATTATATA
*
93165950 TTTTATATATTATATA
1 ATTTATATATTATATA
93165966 ATTTATA
1 ATTTATA
93165973 ACACATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTTATATATTATATA
Found at i:93173792 original size:31 final size:32
Alignment explanation
Indices: 93173735--93173804 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
93173725 CTTAACAAAC
* *
93173735 CAATTACTTAAATAAAAAACTTTTGAATAGATT
1 CAATGACTTAAATAAAAAACTGTTGAATAG-TT
*
93173768 -AATGACTTAAAT-GAAAACTGTTGAATAGTT
1 CAATGACTTAAATAAAAAACTGTTGAATAGTT
93173798 CAATGAC
1 CAATGAC
93173805 CATTTTATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 2 0.06
31 20 0.61
32 11 0.33
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (32 bp):
CAATGACTTAAATAAAAAACTGTTGAATAGTT
Found at i:93181762 original size:17 final size:18
Alignment explanation
Indices: 93181731--93181774 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
93181721 TATTTGTAAT
*
93181731 TTACCCC-TAAAATA-TA
1 TTACCCCATTAAATATTA
93181747 TTACCCCATTAAATATTA
1 TTACCCCATTAAATATTA
*
93181765 TTACACCATT
1 TTACCCCATT
93181775 CATAATATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 7 0.29
17 6 0.25
18 11 0.46
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (18 bp):
TTACCCCATTAAATATTA
Found at i:93183265 original size:45 final size:45
Alignment explanation
Indices: 93183204--93183322 Score: 220
Period size: 45 Copynumber: 2.6 Consensus size: 45
93183194 ATATCCTTCT
93183204 TCCTCGGATCTACCATAACTTGGCTTCCTATATCCTTCTTCCTCC
1 TCCTCGGATCTACCATAACTTGGCTTCCTATATCCTTCTTCCTCC
*
93183249 TCCTCGGATCTACCATAACTTGGCTTCCTATATCCTTCTTCCTCT
1 TCCTCGGATCTACCATAACTTGGCTTCCTATATCCTTCTTCCTCC
*
93183294 TCCTCGGATCTACCATAACTTGGTTTCCT
1 TCCTCGGATCTACCATAACTTGGCTTCCT
93183323 CTCATACCCG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.16, C:0.35, G:0.10, T:0.39
Consensus pattern (45 bp):
TCCTCGGATCTACCATAACTTGGCTTCCTATATCCTTCTTCCTCC
Found at i:93183638 original size:54 final size:54
Alignment explanation
Indices: 93183574--93183697 Score: 176
Period size: 54 Copynumber: 2.3 Consensus size: 54
93183564 TGTTCGCCAT
* *
93183574 ATTCGGGTCTCCGGCCATACCCAGATTCAAATTCAGGAGGCGGAGGCTGCTCAA
1 ATTCGGGTCTCCGGCCATACCCAGATCCAAACTCAGGAGGCGGAGGCTGCTCAA
* * * *
93183628 ATTCGGGTCTCCGTCGATACCCAGATCCAAACTCGGGCGGCGGAGGCTGCTCAA
1 ATTCGGGTCTCCGGCCATACCCAGATCCAAACTCAGGAGGCGGAGGCTGCTCAA
* *
93183682 ATTCTGATCTCCGGCC
1 ATTCGGGTCTCCGGCC
93183698 GGATCCGAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (54 bp):
ATTCGGGTCTCCGGCCATACCCAGATCCAAACTCAGGAGGCGGAGGCTGCTCAA
Found at i:93185400 original size:26 final size:26
Alignment explanation
Indices: 93185363--93185498 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
93185353 TGATACAAAT
* *
93185363 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93185389 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
93185415 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93185441 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93185467 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93185493 TGATAA
1 TGATAA
93185499 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:93187530 original size:137 final size:137
Alignment explanation
Indices: 93187284--93187980 Score: 1297
Period size: 137 Copynumber: 5.1 Consensus size: 137
93187274 GAGTAGTCTC
93187284 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
93187349 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACT
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93187414 ACTGTTA
131 ACTGTTA
* * *
93187421 CCCAAATAGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATAGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
93187486 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTTGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93187551 ACTGTTA
131 ACTGTTA
93187558 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
93187623 TGTTATCTGAATAAGGGGCTAAGGCCAAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93187688 ACTGTTA
131 ACTGTTA
93187695 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
93187760 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTTGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93187825 ACTGTTA
131 ACTGTTA
93187832 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
93187897 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTGCC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93187961 ACTGTTA
131 ACTGTTA
**
93187968 CCTGAATGGGCTT
1 CCCAAATGGGCTT
93187981 AGGCCCAATA
Statistics
Matches: 544, Mismatches: 16, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
136 66 0.12
137 478 0.88
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:93201823 original size:35 final size:35
Alignment explanation
Indices: 93201704--93201832 Score: 134
Period size: 35 Copynumber: 3.5 Consensus size: 35
93201694 TCATTGAAAC
* *
93201704 ACCATACCTACATTTTACAACTCGGTATGGGA-AAT
1 ACCATACCTACATTTCACAACTCAGTAT-GGATAAT
* * **
93201739 GCCATACCTACGTTTCTTAACTCAGTATGGATTTAATAAT
1 ACCATACCTACATTTCACAACTCAGTATGG-----ATAAT
*
93201779 ACCATACCTACATTTCACAACTCAGTATGGATGAT
1 ACCATACCTACATTTCACAACTCAGTATGGATAAT
93201814 ACCATACCTACATTTCACA
1 ACCATACCTACATTTCACA
93201833 CTTTGCCATG
Statistics
Matches: 77, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
34 2 0.03
35 45 0.58
39 1 0.01
40 29 0.38
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
ACCATACCTACATTTCACAACTCAGTATGGATAAT
Found at i:93203886 original size:12 final size:12
Alignment explanation
Indices: 93203858--93203902 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
93203848 GATTGAAAAG
93203858 TTTTAATTTAA-
1 TTTTAATTTAAT
93203869 -TTTAATTTAAT
1 TTTTAATTTAAT
93203880 TTTTAA-TTATAT
1 TTTTAATTTA-AT
93203892 TTTTAAATTTA
1 TTTT-AATTTA
93203903 GAAGTGTCGT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 10 0.34
11 3 0.10
12 11 0.38
13 2 0.07
14 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTTAATTTAAT
Found at i:93204583 original size:21 final size:21
Alignment explanation
Indices: 93204542--93204594 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
93204532 AAGGTTAAAC
93204542 TTTTTAAAAT-TAATTTATAT
1 TTTTTAAAATATAATTTATAT
** *
93204562 TTTTTAAAATATTTTTTTTAT
1 TTTTTAAAATATAATTTATAT
*
93204583 TTTTTAACATAT
1 TTTTTAAAATAT
93204595 GTCCGATATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTAAAATATAATTTATAT
Found at i:93209987 original size:21 final size:22
Alignment explanation
Indices: 93209961--93210009 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
93209951 AATTTTTAAA
93209961 ATTTTAAAAA-ATTATATAAT-T
1 ATTTTAAAAATATT-TATAATAT
*
93209982 ATTTTAAAAATATTTTTAATAT
1 ATTTTAAAAATATTTATAATAT
93210004 ATTTTA
1 ATTTTA
93210010 TTTTTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTTAAAAATATTTATAATAT
Found at i:93218595 original size:13 final size:13
Alignment explanation
Indices: 93218564--93218608 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
93218554 ATTATAAATC
93218564 TAAA-TTTC-TTA
1 TAAATTTTCTTTA
*
93218575 TAACTTTT-TTTAA
1 TAAATTTTCTTT-A
93218588 TAAATTTTCTTTA
1 TAAATTTTCTTTA
93218601 TAAATTTT
1 TAAATTTT
93218609 ATGATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 3 0.11
12 5 0.18
13 17 0.61
14 3 0.11
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATTTTCTTTA
Found at i:93218635 original size:20 final size:21
Alignment explanation
Indices: 93218590--93218636 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
93218580 TTTTTTAATA
93218590 AATTTTCTTTATAAATTTTAT
1 AATTTTCTTTATAAATTTTAT
*
93218611 GATTTT-TTTAATAAATTTT-T
1 AATTTTCTTT-ATAAATTTTAT
93218631 AATTTT
1 AATTTT
93218637 AAAAGGGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
AATTTTCTTTATAAATTTTAT
Found at i:93223461 original size:20 final size:21
Alignment explanation
Indices: 93223436--93223485 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
93223426 GATTGACTTA
*
93223436 ATTTAATATAT-TTTTTAATT
1 ATTTAAAATATATTTTTAATT
93223456 ATTTAAAATATATTTTTAATT
1 ATTTAAAATATATTTTTAATT
*
93223477 -TATAAAATA
1 ATTTAAAATA
93223486 AGTAAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTTAAAATATATTTTTAATT
Found at i:93223468 original size:22 final size:20
Alignment explanation
Indices: 93223440--93223485 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
93223430 GACTTAATTT
*
93223440 AATATATTTTTTAATTATTTAA
1 AATATA-TTTTTAATT-TATAA
93223462 AATATATTTTTAATTTATAA
1 AATATATTTTTAATTTATAA
93223482 AATA
1 AATA
93223486 AGTAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.35
21 9 0.39
22 6 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AATATATTTTTAATTTATAA
Found at i:93232196 original size:31 final size:32
Alignment explanation
Indices: 93232160--93232226 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
93232150 TTTTAAGAAT
*
93232160 TTTAATTTTAATAAAA-ATTTGGGAAAATAAA
1 TTTAATTTTAATAAAATATTTGGAAAAATAAA
93232191 TTTAATTTTAATAAAATATTTGGAAAAATAAA
1 TTTAATTTTAATAAAATATTTGGAAAAATAAA
93232223 TTTA
1 TTTA
93232227 CTCGATAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 16 0.47
32 18 0.53
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (32 bp):
TTTAATTTTAATAAAATATTTGGAAAAATAAA
Found at i:93232414 original size:2 final size:2
Alignment explanation
Indices: 93232409--93232446 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
93232399 GTACAAAATC
93232409 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93232447 AAACAAGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:93235237 original size:127 final size:126
Alignment explanation
Indices: 93234993--93235244 Score: 387
Period size: 126 Copynumber: 2.0 Consensus size: 126
93234983 TACTGTCTCA
* ** * *
93234993 TTTTAATTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCTGTATTTTAGTCGAATGAAAAA
1 TTTTAATTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCATATTTCAATCGAATGAAAAA
93235058 ATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCAAACACAAAATATTGCCTTG
66 ATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCAAACACAAAATATTGCCTTG
* * *
93235119 TTTTAATTTAAGAAAACTTGGACGAAATTTCACAAGGATATTCCATATTTCAATTGAATGAAAAA
1 TTTTAATTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCATATTTCAATCGAATGAAAAA
* * * *
93235184 AGTCGAAACCCAGCACGATTGGGCACGATCTCTTAAACTTCCAAACACGAAATATTTCCTT
66 A-TCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCAAACACAAAATATTGCCTT
93235245 ATGTGGAGAG
Statistics
Matches: 113, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
126 58 0.51
127 55 0.49
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (126 bp):
TTTTAATTTAAGAAAACATGGACGAAATTTCAAAAGGATATTCCATATTTCAATCGAATGAAAAA
ATCGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCAAACACAAAATATTGCCTTG
Found at i:93235434 original size:13 final size:13
Alignment explanation
Indices: 93235403--93235439 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
93235393 ATGAAACAAT
*
93235403 AAAATATGAATAC
1 AAAATATGAAAAC
93235416 --AATATGAAAAC
1 AAAATATGAAAAC
93235427 AAAATATGAAAAC
1 AAAATATGAAAAC
93235440 TAGAAACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
11 10 0.48
13 11 0.52
ACGTcount: A:0.65, C:0.08, G:0.08, T:0.19
Consensus pattern (13 bp):
AAAATATGAAAAC
Found at i:93235624 original size:26 final size:26
Alignment explanation
Indices: 93235545--93235626 Score: 67
Period size: 28 Copynumber: 3.0 Consensus size: 26
93235535 ATAAAAACTG
* *
93235545 ATAATATATGAACGATTATTT-AAATAT
1 ATAATATAT-AAC-ATAATTTCAAATAA
* * * *
93235572 ATAATATGTAAGAAGAAATTCGAAATAA
1 ATAATATATAA-CATAATTTC-AAATAA
93235600 ATAATATATAACATAATTTCAAATAA
1 ATAATATATAACATAATTTCAAATAA
93235626 A
1 A
93235627 ACAAATTAAT
Statistics
Matches: 42, Mismatches: 10, Indels: 7
0.71 0.17 0.12
Matches are distributed among these distances:
26 13 0.31
27 14 0.33
28 15 0.36
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (26 bp):
ATAATATATAACATAATTTCAAATAA
Found at i:93236007 original size:16 final size:16
Alignment explanation
Indices: 93235968--93236008 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
93235958 TATAAAGAGG
93235968 ATTTTAAAATAAATAA
1 ATTTTAAAATAAATAA
*
93235984 ATTGTAAAATAAA-ACA
1 ATTTTAAAATAAATA-A
93236000 ATTTTAAAA
1 ATTTTAAAA
93236009 ATATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 1 0.05
16 21 0.95
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (16 bp):
ATTTTAAAATAAATAA
Found at i:93236124 original size:17 final size:18
Alignment explanation
Indices: 93236104--93236137 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
93236094 ATAATAAATC
93236104 AATTA-AAAAAATAAAAG
1 AATTACAAAAAATAAAAG
*
93236121 AATTACAAAGAATAAAA
1 AATTACAAAAAATAAAA
93236138 AGGTAAACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (18 bp):
AATTACAAAAAATAAAAG
Found at i:93237820 original size:177 final size:176
Alignment explanation
Indices: 93237541--93237948 Score: 611
Period size: 177 Copynumber: 2.3 Consensus size: 176
93237531 CTTCTGGAAT
* * * *
93237541 ATAATATTTGCAATTTTCAGCCTGTCACCCTACTGCTTAGGAGGTTAAGGCTCGTATCTTCAAAC
1 ATAA-ATTTGTAATTTGCAGCCTGTAACCCTACTGCTTAGGGGGTTAAGGCTCGTATCTTCAAAC
* *
93237606 TGCTCTTTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTACTCTATAGCCGAGACATGG
65 TGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTACTCCATAGCCGAGACATGG
*
93237671 AGATAAGACTCTCCATTTTTGATCTGCTCCATAGCCGATACATGGAG
130 AGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGAG
* *
93237718 ATAAGATTTGTAATTTGCAGCCTGTAACCCTACTGTTTAGGGGGTTAAGGCTCGTATCTT-TAAC
1 ATAA-ATTTGTAATTTGCAGCCTGTAACCCTACTGCTTAGGGGGTTAAGGCTCGTATCTTCAAAC
* * * * * *
93237782 TTGCTCTCTTGTTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATT
65 -TGCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTACTCCATAGCCGAGACATG
* *
93237847 GAGATAAGACTCGCCATTTTTGATTTGCTCCATAGCCGATACATGGTG
129 GAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGAG
*
93237895 ATAAATTCTGTAATTTGCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCG
1 ATAAATT-TGTAATTTGCAGCCTGTAACCCTACTGCTTAGGGGGTTAAGGCTCG
93237949 CTGTCTTCGA
Statistics
Matches: 209, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
176 6 0.03
177 203 0.97
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (176 bp):
ATAAATTTGTAATTTGCAGCCTGTAACCCTACTGCTTAGGGGGTTAAGGCTCGTATCTTCAAACT
GCTCTCTTGCTACCTCAGAGAGATAAGGCCGGTGGCTAAAATCTACTCCATAGCCGAGACATGGA
GATAAGACTCGCCATTTTTGATCTGCTCCATAGCCGATACATGGAG
Found at i:93238204 original size:64 final size:64
Alignment explanation
Indices: 93238103--93238227 Score: 205
Period size: 64 Copynumber: 2.0 Consensus size: 64
93238093 TGTATCTATA
* * *
93238103 CTTATGCCAAATAATTAGGATGCTATGATTGCAATGAATCAAATGCTCTTAACTAGATGTAATG
1 CTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCCCCTAACTAGATGTAATG
* *
93238167 CTTATGTCAAATAATTAGGATGTTATGATTGAAATGAATCAAATGCCCCTAACTAGATGTA
1 CTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCCCCTAACTAGATGTA
93238228 TCATGAATGA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.33
Consensus pattern (64 bp):
CTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCCCCTAACTAGATGTAATG
Found at i:93239930 original size:32 final size:32
Alignment explanation
Indices: 93239889--93240000 Score: 115
Period size: 32 Copynumber: 3.6 Consensus size: 32
93239879 GAGAATATTG
*
93239889 TTTTAATAAATTTAATATTTTATCTAGATAGTA
1 TTTT-ATAAATTTAATATTTTATCTAGATAATA
* *
93239922 TTTTATAAATTTAATATTGATATC-AGATATTA
1 TTTTATAAATTTAATATT-TTATCTAGATAATA
** *
93239954 AATT-T-AATTTAATA-TTTATCTTGATAATA
1 TTTTATAAATTTAATATTTTATCTAGATAATA
*
93239983 TTTTATTAATTTAATATT
1 TTTTATAAATTTAATATT
93240001 AATGTAATTA
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
28 4 0.06
29 9 0.14
30 10 0.15
31 10 0.15
32 24 0.37
33 8 0.12
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (32 bp):
TTTTATAAATTTAATATTTTATCTAGATAATA
Found at i:93248429 original size:18 final size:17
Alignment explanation
Indices: 93248377--93248429 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 17
93248367 GGCAAATGGG
93248377 TTTGATTTGGGGAAAAT
1 TTTGATTTGGGGAAAAT
* *
93248394 TTAGGGTTTAGGGG-AAAT
1 TT-TGATTT-GGGGAAAAT
93248412 TTTGATTTGGGGGAAAAT
1 TTTGATTT-GGGGAAAAT
93248430 AAGGGTTTCG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
17 10 0.36
18 14 0.50
19 4 0.14
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (17 bp):
TTTGATTTGGGGAAAAT
Found at i:93249415 original size:40 final size:40
Alignment explanation
Indices: 93249363--93249448 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
93249353 TATAAACACT
*
93249363 TTTTATTATATTTTCAATTTGTCTATTGTTTTAAGAATTG
1 TTTTAATATATTTTCAATTTGTCTATTGTTTTAAGAATTG
** * * * *
93249403 TTTTAATATATTTTTTATTTGTTTCTTGTTTTAATATTTG
1 TTTTAATATATTTTCAATTTGTCTATTGTTTTAAGAATTG
93249443 TTTTAA
1 TTTTAA
93249449 ATGTATTTGA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.23, C:0.03, G:0.08, T:0.65
Consensus pattern (40 bp):
TTTTAATATATTTTCAATTTGTCTATTGTTTTAAGAATTG
Found at i:93252715 original size:129 final size:129
Alignment explanation
Indices: 93252485--93252874 Score: 674
Period size: 129 Copynumber: 3.0 Consensus size: 129
93252475 TCTCATTGCA
*
93252485 ATAATAGTTATTTTTCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAATTT
1 ATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAATTT
*
93252550 AATTTTAATAATGTATACTTTATCCGGATGAAGTATGTATTAGCAGATTCACTAATATGATTAT
66 AATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTAGCAGATTCACTAATATGATTAT
*
93252614 ATAATAGTTATTTTCCAAATAACATATTGTTTTGTAATTTTATTTCTTATTTAATATTTTAATTT
1 ATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAATTT
*
93252679 AATTTTAATAATGCATACTTTATCCGGATGAAGTATGCATTAGCAGATTCACTAATATGATTAT
66 AATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTAGCAGATTCACTAATATGATTAT
93252743 ATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAATTT
1 ATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAATTT
* * * ** *
93252808 AAGTTTAATAATGCATACTTTAGCCTGAAAAAG-AGTGTATTAGCAGATTTACTAATATGATTAT
66 AATTTTAATAATGCATACTTTATCCGGATGAAGTA-TGTATTAGCAGATTCACTAATATGATTAT
93252872 ATA
1 ATA
93252875 TATATATTTA
Statistics
Matches: 248, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
128 1 0.00
129 247 1.00
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.48
Consensus pattern (129 bp):
ATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAATTT
AATTTTAATAATGCATACTTTATCCGGATGAAGTATGTATTAGCAGATTCACTAATATGATTAT
Found at i:93253387 original size:8 final size:8
Alignment explanation
Indices: 93253376--93253401 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
93253366 ATTAATTATT
93253376 TAAAAATA
1 TAAAAATA
93253384 TAAAAATA
1 TAAAAATA
93253392 TAAAAATA
1 TAAAAATA
93253400 TA
1 TA
93253402 TATTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
TAAAAATA
Found at i:93253427 original size:41 final size:41
Alignment explanation
Indices: 93253369--93253451 Score: 100
Period size: 41 Copynumber: 2.0 Consensus size: 41
93253359 TCAATTAATT
*
93253369 AATTATTTAAAAATATAAAA-ATATAAAAATATA-TATTTTAA
1 AATTATTTAAAAATATAAAAGA-ATAAAAAAATACT-TTTTAA
*
93253410 AATTA-TTATAAATTATAAAAGAATAAAAAAATACTTTTTAA
1 AATTATTTA-AAAATATAAAAGAATAAAAAAATACTTTTTAA
93253451 A
1 A
93253452 TTAAAAAAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
40 3 0.08
41 32 0.86
42 2 0.05
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (41 bp):
AATTATTTAAAAATATAAAAGAATAAAAAAATACTTTTTAA
Found at i:93255710 original size:19 final size:18
Alignment explanation
Indices: 93255683--93255718 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
93255673 AAACATAAAA
93255683 ATAACACTAAACAAAATAT
1 ATAACACT-AACAAAATAT
*
93255702 ATAATACTAACAAAATA
1 ATAACACTAACAAAATA
93255719 ATATTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.22
Consensus pattern (18 bp):
ATAACACTAACAAAATAT
Found at i:93256068 original size:18 final size:19
Alignment explanation
Indices: 93256023--93256066 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
93256013 CACCCTCCTC
93256023 TTTTTTTAAAACAATTTAT
1 TTTTTTTAAAACAATTTAT
* *
93256042 TTTTTTTAATACAGTTTAT
1 TTTTTTTAAAACAATTTAT
93256061 TTTTTT
1 TTTTTT
93256067 AACTAATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTTTTAAAACAATTTAT
Found at i:93258448 original size:141 final size:141
Alignment explanation
Indices: 93258141--93258742 Score: 821
Period size: 141 Copynumber: 4.3 Consensus size: 141
93258131 CAAAACAGTG
* * * * * *
93258141 CTAAGACGACA-TTTATGGGGCGACACTTTCCTAACTATTAGGATAGACTGGCCAACATACACTT
1 CTAAGACGACACTTT-TGGGGCGACACTTTCCTAAGTGTTGGGATAGAGTTGCGAACATACACTT
* * * * *
93258205 TGGCCAACTCTTTGTATAAGGGTTAGGACATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGC
65 TGGCCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGC
*
93258270 -TTTGTCTAGTC
130 TTTTGTGTAGTC
*
93258281 CTAAGACGACACTTTTGGGGCTGACACTTTCCTAAGTGTTGGGATAGAGTTGCGAACATACGCTT
1 CTAAGACGACACTTTTGGGGC-GACACTTTCCTAAGTGTTGGGATAGAGTTGCGAACATACACTT
* * * * *
93258346 TGGGCAACTTTTTGTATAAGGGTTGGGATATGTATGCTTAAGGCGACGCTTGAATAAGAGTTGGC
65 TGGCCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGC
*
93258411 TTTTGTATAGTC
130 TTTTGTGTAGTC
* * * *
93258423 CTAAGACGACACTTTTGTGACGACACTTTCCTAAGTGTTGGGATAGAGTTGCAAACATACGCTTT
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGAGTTGCGAACATACACTTT
*
93258488 GGGCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCT
66 GGCCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCT
93258553 TTTGTGTAGTC
131 TTTGTGTAGTC
* * *
93258564 CTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCGAT--A-----G-AC-TACACTTT
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGAGTTGCGAACATACACTTT
*
93258620 AGCCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCT
66 GGCCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCT
93258685 TTTGTGTAGTC
131 TTTGTGTAGTC
* * * *
93258696 CTAAGATGCCACTTTTGAGGCAACACTTTCCTAAGTGTTGGGATAGA
1 CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGA
93258743 CTATGCTTTA
Statistics
Matches: 420, Mismatches: 37, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
132 119 0.28
133 2 0.00
134 1 0.00
139 1 0.00
140 17 0.04
141 251 0.60
142 29 0.07
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (141 bp):
CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGAGTTGCGAACATACACTTT
GGCCAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCT
TTTGTGTAGTC
Found at i:93258728 original size:132 final size:132
Alignment explanation
Indices: 93258491--93258775 Score: 498
Period size: 132 Copynumber: 2.2 Consensus size: 132
93258481 ACGCTTTGGG
93258491 CAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCTTTT
1 CAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCTTTT
* **
93258556 GTGTAGTCCTAAGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCGATAGACTACACTTTA
66 GTGTAGTCCTAAGACGACACTTTTGAGGCAACACTTTCCTAAGTGTTGCGATAGACTACACTTTA
93258621 GC
131 GC
93258623 CAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCTTTT
1 CAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCTTTT
* * * **
93258688 GTGTAGTCCTAAGATGCCACTTTTGAGGCAACACTTTCCTAAGTGTTGGGATAGACTATGCTTTA
66 GTGTAGTCCTAAGACGACACTTTTGAGGCAACACTTTCCTAAGTGTTGCGATAGACTACACTTTA
93258753 GC
131 GC
93258755 CAACTCTTTGTATAAGGGTTG
1 CAACTCTTTGTATAAGGGTTG
93258776 AGATTTGGCC
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 145 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (132 bp):
CAACTCTTTGTATAAGGGTTGGGATATGTATGCCTAAGGCAACACTTGAATAAGAGTTGGCTTTT
GTGTAGTCCTAAGACGACACTTTTGAGGCAACACTTTCCTAAGTGTTGCGATAGACTACACTTTA
GC
Found at i:93259220 original size:36 final size:35
Alignment explanation
Indices: 93259178--93259284 Score: 124
Period size: 37 Copynumber: 2.9 Consensus size: 35
93259168 AGGGATTAGG
* *
93259178 GATTATGGTTTATGGTTTAAGATTGTAGGGTTTTGT
1 GATTATGGTTT-GGGTTTAAGATTTTAGGGTTTTGT
* *
93259214 GTTTATGGATTTGGGGTTTAAGATTTTAGGATTTTGT
1 GATTATGG-TTT-GGGTTTAAGATTTTAGGGTTTTGT
* *
93259251 GATTATGGGTTGGGTTTTAGGATTTTAGGGTTTT
1 GATTATGGTTTGGG-TTTAAGATTTTAGGGTTTT
93259285 TTTAATATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
35 3 0.05
36 26 0.43
37 31 0.52
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (35 bp):
GATTATGGTTTGGGTTTAAGATTTTAGGGTTTTGT
Found at i:93259238 original size:37 final size:36
Alignment explanation
Indices: 93259191--93259284 Score: 125
Period size: 37 Copynumber: 2.6 Consensus size: 36
93259181 TATGGTTTAT
* * *
93259191 GGTTTAAGATTGTAGGGTTTTGTGTTTATGGATTTGG
1 GGTTTAAGATTTTAGGGTTTTGTGATTATGG-GTTGG
*
93259228 GGTTTAAGATTTTAGGATTTTGTGATTATGGGTTGG
1 GGTTTAAGATTTTAGGGTTTTGTGATTATGGGTTGG
* *
93259264 GTTTTAGGATTTTAGGGTTTT
1 GGTTTAAGATTTTAGGGTTTT
93259285 TTTAATATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 22 0.44
37 28 0.56
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (36 bp):
GGTTTAAGATTTTAGGGTTTTGTGATTATGGGTTGG
Found at i:93259519 original size:29 final size:29
Alignment explanation
Indices: 93259486--93259542 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
93259476 TTAACACAAT
93259486 TATTG-ATATAATATAAT-TTTATATTTATA
1 TATTGCATA-AATA-AATATTTATATTTATA
*
93259515 TATTGCATACATAAATATTTATATTTAT
1 TATTGCATAAATAAATATTTATATTTAT
93259543 TCAATATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 3 0.12
29 19 0.76
30 3 0.12
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (29 bp):
TATTGCATAAATAAATATTTATATTTATA
Found at i:93259947 original size:10 final size:9
Alignment explanation
Indices: 93259923--93259968 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 9
93259913 TATATGTTAA
93259923 TTAAAAATT
1 TTAAAAATT
*
93259932 ATAAAAATT
1 TTAAAAATT
93259941 TTCAAAAATAT
1 TT-AAAAAT-T
93259952 TTAAAAA--
1 TTAAAAATT
93259959 TTAAAAATT
1 TTAAAAATT
93259968 T
1 T
93259969 AATATTTTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
7 7 0.23
9 10 0.32
10 11 0.35
11 3 0.10
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (9 bp):
TTAAAAATT
Found at i:93266102 original size:21 final size:21
Alignment explanation
Indices: 93266076--93266116 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
93266066 TCCAGCAACC
93266076 AAACAC-TCTCATTCCAGCTCT
1 AAACACTTCT-ATTCCAGCTCT
*
93266097 AAACACTTCTATTCCGGCTC
1 AAACACTTCTATTCCAGCTC
93266117 CTGTCCAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.27, C:0.37, G:0.07, T:0.29
Consensus pattern (21 bp):
AAACACTTCTATTCCAGCTCT
Found at i:93268997 original size:37 final size:36
Alignment explanation
Indices: 93268928--93269003 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
93268918 TCTATCGCAA
* *
93268928 GTTATCTTAGACGGGTTTATCCTAACCTTTTTTAAAG
1 GTTATCTTAGACCGATTTATCCTAACCTTTTTT-AAG
93268965 GTTATCTTAGACACGATTTAT-CTCAACC-TTTTTAAG
1 GTTATCTTAGAC-CGATTTATCCT-AACCTTTTTTAAG
93269001 GTT
1 GTT
93269004 GCTTTAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 6 0.17
37 19 0.54
38 10 0.29
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.43
Consensus pattern (36 bp):
GTTATCTTAGACCGATTTATCCTAACCTTTTTTAAG
Found at i:93272590 original size:22 final size:21
Alignment explanation
Indices: 93272565--93272615 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
93272555 GTTTCTTTTT
93272565 TTATTTATTCTT-ATTATTATTC
1 TTATTTATT-TTCATTATTA-TC
*
93272587 TTATTTATTTTCATTTTTATC
1 TTATTTATTTTCATTATTATC
93272608 TT-TTTATT
1 TTATTTATT
93272616 ATTTTTACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 6 0.22
21 6 0.22
22 15 0.56
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.73
Consensus pattern (21 bp):
TTATTTATTTTCATTATTATC
Found at i:93272594 original size:16 final size:16
Alignment explanation
Indices: 93272575--93272631 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
93272565 TTATTTATTC
*
93272575 TTATTATTATTCTTAT
1 TTATTATTATTTTTAT
93272591 TTATT-TTCATTTTTAT
1 TTATTATT-ATTTTTAT
* *
93272607 CTTTTTATTATTTTTAC
1 -TTATTATTATTTTTAT
93272624 TTATTATT
1 TTATTATT
93272632 TTCCTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
15 2 0.06
16 19 0.56
17 11 0.32
18 2 0.06
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (16 bp):
TTATTATTATTTTTAT
Found at i:93279335 original size:46 final size:46
Alignment explanation
Indices: 93279275--93279586 Score: 408
Period size: 46 Copynumber: 7.0 Consensus size: 46
93279265 TTTGACGTGA
* * * * * * *
93279275 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
93279321 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
93279367 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
93279413 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
93279459 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
93279505 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
93279543 TACCATGGTATCTTTCAACCATGGTCTTACACATTTAATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
93279587 AGAGCACACT
Statistics
Matches: 241, Mismatches: 16, Indels: 18
0.88 0.06 0.07
Matches are distributed among these distances:
38 32 0.13
39 1 0.00
40 3 0.01
41 1 0.00
44 3 0.01
45 5 0.02
46 196 0.81
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:93279551 original size:38 final size:38
Alignment explanation
Indices: 93279500--93279575 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
93279490 CATTTCATAT
*
93279500 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACA
93279538 CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACA
93279576 TTTAATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (38 bp):
CAGGTTACCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:93281727 original size:11 final size:11
Alignment explanation
Indices: 93281711--93281758 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
93281701 CTTTATATAC
93281711 TAATAAAATAA
1 TAATAAAATAA
*
93281722 TAATAAAATATCT
1 TAATAAAATA--A
* *
93281735 TATTAAAATAT
1 TAATAAAATAA
93281746 TAATAAAATAA
1 TAATAAAATAA
93281757 TA
1 TA
93281759 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:93282332 original size:26 final size:26
Alignment explanation
Indices: 93282274--93282332 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 26
93282264 TATTTTCTCG
** *
93282274 AAATTTTACCAGGGGCAAAATTGTTA
1 AAATTTTACCAGGGGCAAAATCATCA
* * *
93282300 AAGTTTTACCATGGGTAAAATCATCA
1 AAATTTTACCAGGGGCAAAATCATCA
93282326 AAATTTT
1 AAATTTT
93282333 GCTAAAGGTA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (26 bp):
AAATTTTACCAGGGGCAAAATCATCA
Found at i:93286007 original size:26 final size:27
Alignment explanation
Indices: 93285978--93286030 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
93285968 TTTAAATAGT
93285978 AAAGTAAAACAGCAT-GGGGTTTGGAA
1 AAAGTAAAACAGCATGGGGGTTTGGAA
* *
93286004 AAAGTAAAGCAGTATGGGGGTTTGGAA
1 AAAGTAAAACAGCATGGGGGTTTGGAA
93286031 GTCCGCGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.40, C:0.06, G:0.34, T:0.21
Consensus pattern (27 bp):
AAAGTAAAACAGCATGGGGGTTTGGAA
Found at i:93286608 original size:12 final size:13
Alignment explanation
Indices: 93286573--93286628 Score: 53
Period size: 12 Copynumber: 4.4 Consensus size: 13
93286563 ATTAAGTCTT
*
93286573 TTTATGTAAATTA
1 TTTATGTATATTA
* *
93286586 -ATATGTGTATTA
1 TTTATGTATATTA
93286598 TTT-TGTATATTA
1 TTTATGTATATTA
*
93286610 TTTACTTTATATTA
1 TTTA-TGTATATTA
93286624 TTTAT
1 TTTAT
93286629 TTTAAAGTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 20 0.59
13 2 0.06
14 12 0.35
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (13 bp):
TTTATGTATATTA
Found at i:93286622 original size:14 final size:14
Alignment explanation
Indices: 93286603--93286632 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93286593 TATTATTTTG
93286603 TATATTATTTACTT
1 TATATTATTTACTT
*
93286617 TATATTATTTATTT
1 TATATTATTTACTT
93286631 TA
1 TA
93286633 AAGTTCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
TATATTATTTACTT
Found at i:93287533 original size:154 final size:154
Alignment explanation
Indices: 93287249--93287549 Score: 467
Period size: 154 Copynumber: 2.0 Consensus size: 154
93287239 TTTCATTGCA
*
93287249 TATTTTGGGAATCTTGAGATGATCTCAGTTTTCGGAGGCTTAAAATATCGTGTCCTAACGTGCTG
1 TATTTTGGAAATCTTGAGATGATCTCAGTTTTCGGAGGCTTAAAATATCGTGTCCTAACGTGCTG
* * * * *
93287314 GATGTGGTATTTTATTCCTTTGGGACGAGTAAATCTTGAAATTCGACTCAAGTTGTGCACACATT
66 GATGTGGTATTTTATTCCTTTGGAACGAGTAAATCTTAAAATCCAAATCAAGTTGTGCACACATT
93287379 TTTAAGAGGATCGTATTCGTCGCG
131 TTTAAGAGGATCGTATTCGTCGCG
* * *
93287403 TATTTTGGAAATCTTGAGGTGATCTTAGTTTTTGGAGGCTTAAAATATCGTGTCCTAACGTGCTG
1 TATTTTGGAAATCTTGAGATGATCTCAGTTTTCGGAGGCTTAAAATATCGTGTCCTAACGTGCTG
* * ** *
93287468 GATGTGGTATTTTATTCCTTTGGAACGAGTGAATCTTAAAATCCAAATCGAGTTGTTTACGCATT
66 GATGTGGTATTTTATTCCTTTGGAACGAGTAAATCTTAAAATCCAAATCAAGTTGTGCACACATT
*
93287533 TTTAAGGGGATCGTATT
131 TTTAAGAGGATCGTATT
93287550 TTAATATTTT
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
154 132 1.00
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.38
Consensus pattern (154 bp):
TATTTTGGAAATCTTGAGATGATCTCAGTTTTCGGAGGCTTAAAATATCGTGTCCTAACGTGCTG
GATGTGGTATTTTATTCCTTTGGAACGAGTAAATCTTAAAATCCAAATCAAGTTGTGCACACATT
TTTAAGAGGATCGTATTCGTCGCG
Found at i:93292262 original size:46 final size:46
Alignment explanation
Indices: 93292210--93292383 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
93292200 TGGTTGAGCA
93292210 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93292256 TTCGAACTCGTTGAGTTGAGTCC-AGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
93292300 CATCCGAGCTCGTTGAGTT-AGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
93292347 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93292384 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 25 0.24
46 60 0.58
47 3 0.03
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93292363 original size:91 final size:93
Alignment explanation
Indices: 93292207--93292375 Score: 270
Period size: 91 Copynumber: 1.8 Consensus size: 93
93292197 GGATGGTTGA
* **
93292207 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93292272 TGAGTCC-AGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
93292299 GCATCCGAGCTCGTTGAGTT-AGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93292363 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
93292376 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
91 46 0.66
92 24 0.34
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:93295048 original size:46 final size:44
Alignment explanation
Indices: 93294997--93295199 Score: 205
Period size: 46 Copynumber: 4.5 Consensus size: 44
93294987 GACGAGGGCT
*
93294997 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAG-ATG--TGCC
* *
93295043 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATG-TGCC
* * *
93295088 AGTGTCAA-ACATGTCTGGGACATGCGTCAGCTACGAGATGTGCT
1 AGTGT-AAGACATGTCTGGGACATGCATCAGCCACGAGATGTGCC
* * * * *
93295132 AGTGTAAGACATGTCTAGGACATGCGTCAG-CACTGTTACATGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-G--AGATGTGCC
*
93295178 AGTGTAAGACCTGTCTGGGACA
1 AGTGTAAGACATGTCTGGGACA
93295200 CGGCATCGAC
Statistics
Matches: 134, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
43 4 0.03
44 30 0.22
45 36 0.27
46 62 0.46
47 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTGCC
Found at i:93295104 original size:45 final size:44
Alignment explanation
Indices: 93294943--93295199 Score: 198
Period size: 46 Copynumber: 5.6 Consensus size: 44
93294933 ATGAGATTTG
* * * * *
93294943 TGTGCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGAGA
1 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGA
* * * *
93294989 CGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTA
1 --TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAG-A
* *
93295035 TGAAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
1 TG--TGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGA
*
93295081 TGTTGCCAGTGTCAA-ACATGTCTGGGACATGCGTCAG-CTACGAGA
1 TG-TGCCAGTGT-AAGACATGTCTGGGACATGCATCAGCCT-CGAGA
* * * *
93295126 TGTGCTAGTGTAAGACATGTCTAGGACATGCGTCAGCACT-GTTACA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGC-CTCG--AGA
* * *
93295172 TGAGTCAGTGTAAGACCTGTCTGGGACA
1 TGTGCCAGTGTAAGACATGTCTGGGACA
93295200 CGGCATCGAC
Statistics
Matches: 172, Mismatches: 26, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
43 2 0.01
44 33 0.19
45 37 0.22
46 74 0.43
47 14 0.08
48 12 0.07
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGA
Found at i:93295573 original size:14 final size:14
Alignment explanation
Indices: 93295556--93295583 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
93295546 AGTCAAAAGT
93295556 TTAGAGGCTTTACA
1 TTAGAGGCTTTACA
93295570 TTAGAGGCTTTACA
1 TTAGAGGCTTTACA
93295584 ATCTTCGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (14 bp):
TTAGAGGCTTTACA
Found at i:93298635 original size:46 final size:46
Alignment explanation
Indices: 93298583--93298758 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
93298573 TGGTTGAGCA
93298583 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93298629 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
93298674 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
93298722 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93298759 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93298739 original size:93 final size:93
Alignment explanation
Indices: 93298580--93298750 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
93298570 GGATGGTTGA
* **
93298580 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93298645 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
93298673 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93298738 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
93298751 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:93303243 original size:44 final size:44
Alignment explanation
Indices: 93303107--93303250 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 44
93303097 AGCCTTAACC
* *
93303107 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATTTTATCT
1 CCCTAAGCAGTAGGGTAACAAGCTAAAAATTACAGATCTTATCT
* * * * * * * * *
93303151 CCCTAAGCAATAGCAG-AGC-AGAT-CAAA-GACAGCAAGCCTTAACC
1 CCCTAAGCAGTAG-GGTAACAAGCTAAAAATTACAG--A-TCTTATCT
*
93303195 CCCTAAGCAGTAGGGTAACAAGCTAGAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAAGCTAAAAATTACAGATCTTATCT
93303239 CCCTAAGCAGTA
1 CCCTAAGCAGTA
93303251 ACAAAGTAGA
Statistics
Matches: 72, Mismatches: 20, Indels: 16
0.67 0.19 0.15
Matches are distributed among these distances:
41 4 0.06
42 3 0.04
43 4 0.06
44 49 0.68
45 5 0.07
46 3 0.04
47 4 0.06
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.21
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGTAACAAGCTAAAAATTACAGATCTTATCT
Found at i:93303246 original size:88 final size:88
Alignment explanation
Indices: 93303097--93303596 Score: 507
Period size: 88 Copynumber: 5.8 Consensus size: 88
93303087 TGAAGATACG
* * *
93303097 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATTTTATCTCCCTAAGCAAT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
93303162 AGCAGAGCAGATCAAAGACAGCA
66 AGCAGAGCAGATCAAAGACGGTA
*
93303185 AGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTAGAAATTACAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* * * ** *
93303250 AACAAAGTAGATCAAAGATAGCA
66 AGCAGAGCAGATCAAAGACGGTA
* * *
93303273 AGCCTTAACCCCTTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATTTTATCTCCCTAAACAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
93303338 AG-TG-G-AG--C-AAGACGGTG
66 AGCAGAGCAGATCAAAGACGGTA
** ** * * *
93303355 AGCCTTATTCCCCTAAGCAGTAGGAAAACAGGCT-GAAAGTTACAGATCTTATCTCCTTTAGTAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAA-TTACAGATCTTATCTCCCTAAGCAG
** * *
93303419 TAGTGGAGCAGATCGAAGACGGTG
65 TAGCAGAGCAGATCAAAGACGGTA
* * * * * * *
93303443 AGCCTTATCCCTCTAAGAAGTAGGGAAATAGGCTGGGAATTACAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGT
* * **
93303508 AGCGGAACAGATCGCAGACGGTA
66 AGCAGAGCAGATCAAAGACGGTA
* * * *
93303531 AGCCTTATCTCCCTAAGCAGTAGTGG-AGCAGGCT-GAAGATTACAGATCATATCT-CCTCAAGC
1 AGCCTTAACCCCCTAAGCAGTAG-GGTAACAGGCTAGAA-ATTACAGATCTTATCTCCCT-AAGC
93303593 AGTA
63 AGTA
93303597 ATGGAGCAGA
Statistics
Matches: 351, Mismatches: 50, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
81 4 0.01
82 57 0.16
83 2 0.01
84 1 0.00
85 4 0.01
86 1 0.00
87 6 0.02
88 271 0.77
89 5 0.01
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGT
AGCAGAGCAGATCAAAGACGGTA
Found at i:93303553 original size:258 final size:258
Alignment explanation
Indices: 93303096--93303604 Score: 587
Period size: 258 Copynumber: 2.0 Consensus size: 258
93303086 TTGAAGATAC
** *
93303096 GAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATTTTATCTCCCTAAGCAA
1 GAGCCTTAACCCCCTAAGCAGTAGGAAAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAA
* *
93303161 TAGCAGAGCAGATCAAAGACAGCAAGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCTAGAAATT
66 TAGCAGAGCAGATCAAAGACAGCAAGCCTTAACCCCCTAAGAAGTAGGGAAACAAGCTAGAAATT
* *
93303226 ACAGATCTTATCTCCCTAAGCAGTAACAAAGTAGATCAAAGATAGCAAGCCTTAACCCCTTAAGC
131 ACAGATCTTATCTCCCTAAGCAGTAACAAAGCAGATCAAAGACAGCAAGCCTTAACCCCTTAAGC
** *
93303291 AGTAG-GGTAACAGGCTAGAA-ATTACAGATTTTATCTCC-CTAAACAGTAGTGGAGCAAGACGG
196 AGTAGTGG-AACAGGCT-GAAGATTACAGATCATATCTCCTC-AAACAGTAATGGAGCAAGACGG
93303353 T
258 T
** * * * * * *
93303354 GAGCCTTATTCCCCTAAGCAGTAGGAAAACAGGCTGAAAGTTACAGATCTTATCTCCTTTAGTAG
1 GAGCCTTAACCCCCTAAGCAGTAGGAAAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAA
** * * ** * * * * * *
93303419 TAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCTCTAAGAAGTAGGGAAATAGGCTGGGAATT
66 TAGCAGAGCAGATCAAAGACAGCAAGCCTTAACCCCCTAAGAAGTAGGGAAACAAGCTAGAAATT
* * ** * * *
93303484 ACAGATCTTATCTCCCTAAGCAGTAGCGGAA-CAGATCGCAGACGGTAAGCCTTATCTCCC-TAA
131 ACAGATCTTATCTCCCTAAGCAGTAAC-AAAGCAGATCAAAGACAGCAAGCCTTAAC-CCCTTAA
* *
93303547 GCAGTAGTGGAGCAGGCTGAAGATTACAGATCATATCTCCTCAAGCAGTAATGGAGCA
194 GCAGTAGTGGAACAGGCTGAAGATTACAGATCATATCTCCTCAAACAGTAATGGAGCA
93303605 GATAAAAACG
Statistics
Matches: 207, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
257 3 0.01
258 196 0.95
259 8 0.04
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (258 bp):
GAGCCTTAACCCCCTAAGCAGTAGGAAAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAA
TAGCAGAGCAGATCAAAGACAGCAAGCCTTAACCCCCTAAGAAGTAGGGAAACAAGCTAGAAATT
ACAGATCTTATCTCCCTAAGCAGTAACAAAGCAGATCAAAGACAGCAAGCCTTAACCCCTTAAGC
AGTAGTGGAACAGGCTGAAGATTACAGATCATATCTCCTCAAACAGTAATGGAGCAAGACGGT
Found at i:93304557 original size:26 final size:27
Alignment explanation
Indices: 93304528--93304580 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
93304518 TTTAAATAGT
93304528 AAAGTAAAACAGCACG-GGGTTTGGAA
1 AAAGTAAAACAGCACGAGGGTTTGGAA
* * *
93304554 AAAGTAAAGCAGTATGAGGGTTTGGAA
1 AAAGTAAAACAGCACGAGGGTTTGGAA
93304581 GTCCGCGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.42, C:0.08, G:0.32, T:0.19
Consensus pattern (27 bp):
AAAGTAAAACAGCACGAGGGTTTGGAA
Found at i:93304967 original size:2 final size:2
Alignment explanation
Indices: 93304960--93304988 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
93304950 ATCATTTAGT
93304960 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
93304989 TGACGTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:93305182 original size:14 final size:14
Alignment explanation
Indices: 93305163--93305192 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93305153 TATTATTTTG
93305163 TATATTATTTAATT
1 TATATTATTTAATT
*
93305177 TATATTATTTATTT
1 TATATTATTTAATT
93305191 TA
1 TA
93305193 AAGTTCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATATTATTTAATT
Found at i:93306076 original size:155 final size:154
Alignment explanation
Indices: 93305793--93306104 Score: 437
Period size: 155 Copynumber: 2.0 Consensus size: 154
93305783 TTTTTTAAAT
* * * *
93305793 TTTGTTGCATATTTTGGGAATCTTGAGATGATTTCAGTTTTCGAAGGCTTAAAATATCGTGTCTT
1 TTTGTCGCATATTTTGGAAATCTTGAGATGATCTCAGTTTTCGAAGGCTTAAAATATCGTGTCCT
* * * ** *
93305858 AACGTGCTGGATGTGGTATTTTATTCCTTTGGGACGAGTGAATCTTGAAATCCGACTCAAGTTGT
66 AACGTACTGGATGTGGTATTTTATTCCTTTGGAACGAGTGAATCTTAAAATCAAAATCAAGTTGT
93305923 GCACACATTTTTTAAGGGGATCGTA
131 GCACACA-TTTTTAAGGGGATCGTA
* * *
93305948 TTTGTCGCGTATTTTGGAAATCTTGA-AGTGATCTCAGTTTTTGGAGGCTTAAAATATCGTGTCC
1 TTTGTCGCATATTTTGGAAATCTTGAGA-TGATCTCAGTTTTCGAAGGCTTAAAATATCGTGTCC
* *
93306012 TAATGTACTGGATGTGGTATTTTATTCCTTTGGAACGAGTGAATCTTAAAATCAAAATCGAGTTG
65 TAACGTACTGGATGTGGTATTTTATTCCTTTGGAACGAGTGAATCTTAAAATCAAAATCAAGTTG
** *
93306077 TTTACTCATTTTTAAGGGGATCGTA
130 TGCACACATTTTTAAGGGGATCGTA
93306102 TTT
1 TTT
93306105 TAATATTTTT
Statistics
Matches: 138, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
154 21 0.15
155 117 0.85
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (154 bp):
TTTGTCGCATATTTTGGAAATCTTGAGATGATCTCAGTTTTCGAAGGCTTAAAATATCGTGTCCT
AACGTACTGGATGTGGTATTTTATTCCTTTGGAACGAGTGAATCTTAAAATCAAAATCAAGTTGT
GCACACATTTTTAAGGGGATCGTA
Found at i:93313985 original size:9 final size:9
Alignment explanation
Indices: 93313971--93314026 Score: 58
Period size: 9 Copynumber: 5.9 Consensus size: 9
93313961 TTTTGGTATG
93313971 ATAATTTTT
1 ATAATTTTT
93313980 ATAATTTTTTT
1 ATAA--TTTTT
*
93313991 ATAAATTTT
1 ATAATTTTT
*
93314000 ATATTTCTTT
1 ATAATT-TTT
*
93314010 ATATTTTTT
1 ATAATTTTT
93314019 ATAATTTT
1 ATAATTTT
93314027 CTTACGACTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 22 0.55
10 9 0.22
11 9 0.22
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (9 bp):
ATAATTTTT
Found at i:93314018 original size:19 final size:19
Alignment explanation
Indices: 93313971--93314021 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
93313961 TTTTGGTATG
*
93313971 ATAATTTTTATAATTTTTTT
1 ATAATTTTTAT-ATTTCTTT
*
93313991 ATAAATTTTATATTTCTTT
1 ATAATTTTTATATTTCTTT
*
93314010 ATATTTTTTATA
1 ATAATTTTTATA
93314022 ATTTTCTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
ATAATTTTTATATTTCTTT
Found at i:93325401 original size:26 final size:25
Alignment explanation
Indices: 93325372--93325444 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
93325362 TTTCAACCTT
93325372 TTTTAAATTTGTTATTTATTTATTCA
1 TTTTAAATTT-TTATTTATTTATTCA
* *
93325398 TTTTAATAGTTTTATATA-TTATTCA
1 TTTTAA-ATTTTTATTTATTTATTCA
93325423 TTTTAAACTATTTTATTTATTT
1 TTTTAAA-T-TTTTATTTATTT
93325445 TAAATTCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 1 0.03
25 13 0.33
26 20 0.51
27 5 0.13
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (25 bp):
TTTTAAATTTTTATTTATTTATTCA
Found at i:93325456 original size:44 final size:44
Alignment explanation
Indices: 93325390--93325523 Score: 117
Period size: 44 Copynumber: 2.9 Consensus size: 44
93325380 TTGTTATTTA
* * *
93325390 TTTATTCATTTTAATAGTTTTATATATTATTCATTTTAAACT-AT
1 TTTATTTATTTTAA-ATTTTTATATATTATTTATTTTAAACTGAT
* * * *
93325434 TTTATTTATTTTAAATTCTTTATACACTATTTATATTAAACTGCT
1 TTTATTTATTTTAAATT-TTTATATATTATTTATTTTAAACTGAT
*
93325479 TTATATTATTCATTTTAAATTGTTTTAGATATTATTTATTTTAAA
1 TT-TA-T-TT-ATTTTAAA-T-TTTTATATATTATTTATTTTAAA
93325524 TTGTTTCATA
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
43 2 0.03
44 33 0.46
45 3 0.04
46 2 0.03
47 1 0.01
48 2 0.03
49 8 0.11
50 19 0.27
51 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (44 bp):
TTTATTTATTTTAAATTTTTATATATTATTTATTTTAAACTGAT
Found at i:93325519 original size:26 final size:26
Alignment explanation
Indices: 93325435--93325754 Score: 191
Period size: 26 Copynumber: 12.4 Consensus size: 26
93325425 TTAAACTATT
* *
93325435 TTATTTATTTTAAATT-CTTTATACA
1 TTATTTATTTTAAATTGTTTTATATA
* * * *
93325460 CTATTTATATTAAACTG-CTT-TATA
1 TTATTTATTTTAAATTGTTTTATATA
* *
93325484 TTATTCATTTTAAATTGTTTTAGATA
1 TTATTTATTTTAAATTGTTTTATATA
93325510 TTATTTATTTTAAATTGTTTCATATATA
1 TTATTTATTTTAAATTGTTT--TATATA
* * *
93325538 TTATTTATTTTGAACTGCTTTATATA
1 TTATTTATTTTAAATTGTTTTATATA
* *
93325564 TTATTTTATTTTAAAACTG--TTCTATA
1 TTA-TTTATTTT-AAATTGTTTTATATA
* * *
93325590 GTATTTATTTTAGATTTTTTTATTACATA
1 TTATTTATTTTAAATTGTTTTA-T--ATA
* * * *
93325619 TTATTTCTTTTAAAAATGCTGTATATA
1 TTATTTATTTT-AAATTGTTTTATATA
* *
93325646 TTATTTATTTTAAATTG-CTT-TAGA
1 TTATTTATTTTAAATTGTTTTATATA
** * *
93325670 TTATTTATTTTAAACGGTTTTGTATT
1 TTATTTATTTTAAATTGTTTTATATA
*
93325696 TTATTTATGTT-AA-T-TTTT-TATA
1 TTATTTATTTTAAATTGTTTTATATA
*
93325718 TTGTTTATTTTGAACCATT-TTTTATAT-
1 TTATTTATTTT-AA--ATTGTTTTATATA
93325745 TT-TTTATTTT
1 TTATTTATTTT
93325755 TCATGTATTA
Statistics
Matches: 229, Mismatches: 45, Indels: 41
0.73 0.14 0.13
Matches are distributed among these distances:
22 12 0.05
23 4 0.02
24 38 0.17
25 30 0.13
26 67 0.29
27 29 0.13
28 30 0.13
29 13 0.06
30 6 0.03
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (26 bp):
TTATTTATTTTAAATTGTTTTATATA
Found at i:93325540 original size:54 final size:53
Alignment explanation
Indices: 93325435--93325683 Score: 192
Period size: 54 Copynumber: 4.8 Consensus size: 53
93325425 TTAAACTATT
* * * * * *
93325435 TTATTTATTTTAAATT-CTTTATACACTATTTATATT-AAACTG--CTTTATA
1 TTATTTATTTTAAATTGCTTTAGATATTATTTATTTTAAAAATGTTCTATATA
* * *
93325484 TTATTCATTTTAAATTGTTTTAGATATTATTTATTTT-AAATTGTTTCATATATA
1 TTATTTATTTTAAATTGCTTTAGATATTATTTATTTTAAAAATG-TTC-TATATA
* * * *
93325538 TTATTTATTTTGAACTGCTTTATATATTATTTTATTTTAAAACTGTTC--TATA
1 TTATTTATTTTAAATTGCTTTAGATATTA-TTTATTTTAAAAATGTTCTATATA
* * ** * * * *
93325590 GTATTTATTTTAGATTTTTTTATTACATATTATTTCTTTTAAAAATGCTGTATATA
1 TTATTTATTTTA-A-ATTGCT-TTAGATATTATTTATTTTAAAAATGTTCTATATA
93325646 TTATTTATTTTAAATTGCTTTAG--ATTATTTATTTTAAA
1 TTATTTATTTTAAATTGCTTTAGATATTATTTATTTTAAA
93325684 CGGTTTTGTA
Statistics
Matches: 157, Mismatches: 31, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
49 15 0.10
50 20 0.13
51 14 0.09
52 14 0.09
53 5 0.03
54 48 0.31
55 21 0.13
56 20 0.13
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (53 bp):
TTATTTATTTTAAATTGCTTTAGATATTATTTATTTTAAAAATGTTCTATATA
Found at i:93325601 original size:80 final size:78
Alignment explanation
Indices: 93325436--93325659 Score: 215
Period size: 81 Copynumber: 2.8 Consensus size: 78
93325426 TAAACTATTT
* * * * *
93325436 TATTTATTTTAAATTCTT-TATACACTATTTATATTAAACTGC-TT-TATATTATTCATTTT-AA
1 TATTTATTTTAAATTTTTATATATATTATTTATTTTAAACTGCTTTATATATTATTTATTTTAAA
* * *
93325497 ATTGTTTTAGATAT
66 ACTGTTCTA-ATAG
*
93325511 TATTTATTTTAAATTGTTTCATATATATTATTTATTTTGAACTGCTTTATATATTATTTTATTTT
1 TATTTATTTTAAATT-TTT-ATATATATTATTTATTTTAAACTGCTTTATATATTA-TTTATTTT
93325576 AAAACTGTTCT-ATAG
63 AAAACTGTTCTAATAG
* * * * *
93325591 TATTTATTTTAGATTTTTTTATTACATATTATTTCTTTTAAAAATGCTGTATATATTATTTATTT
1 TATTTATTTTA-A-ATTTTTA-TATATATTATTTATTTT-AAACTGCTTTATATATTATTTATTT
93325656 TAAA
62 TAAA
93325660 TTGCTTTAGA
Statistics
Matches: 123, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
75 15 0.12
76 2 0.02
78 20 0.16
79 2 0.02
80 22 0.18
81 37 0.30
82 25 0.20
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (78 bp):
TATTTATTTTAAATTTTTATATATATTATTTATTTTAAACTGCTTTATATATTATTTATTTTAAA
ACTGTTCTAATAG
Found at i:93325675 original size:80 final size:77
Alignment explanation
Indices: 93325435--93325683 Score: 238
Period size: 80 Copynumber: 3.2 Consensus size: 77
93325425 TTAAACTATT
* * * * *
93325435 TTATTTATTTTAAATTCTTT-ATAC--ACTATTTATATTAAACTGCT-T-TATATTATTCATTTT
1 TTATTTATTTTAAATTGTTTCATACATATTATTTATTTTAAAATGCTGTATATATTATTTATTTT
93325495 AAATTGTTTTAGATA
66 AAATTG-TTTAG--A
* * * *
93325510 TTATTTATTTTAAATTGTTTCATATATATTATTTATTTTGAACTGCTTTATATATTATTTTATTT
1 TTATTTATTTTAAATTGTTTCATACATATTATTTATTTTAAAATGCTGTATATATTA-TTTATTT
* *
93325575 TAAAACTGTTCTATA
65 T-AAATTGTT-TAGA
* * * * *
93325590 GTATTTATTTTAGATTTTTTTATTACATATTATTTCTTTTAAAAATGCTGTATATATTATTTATT
1 TTATTTATTTTAAATTGTTTCA-TACATATTATTTATTTT-AAAATGCTGTATATATTATTTATT
93325655 TTAAATTGCTTTAGA
64 TTAAATTG-TTTAGA
93325670 TTATTTATTTTAAA
1 TTATTTATTTTAAA
93325684 CGGTTTTGTA
Statistics
Matches: 142, Mismatches: 21, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
75 19 0.13
76 3 0.02
78 17 0.12
79 1 0.01
80 46 0.32
81 34 0.24
82 22 0.15
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (77 bp):
TTATTTATTTTAAATTGTTTCATACATATTATTTATTTTAAAATGCTGTATATATTATTTATTTT
AAATTGTTTAGA
Found at i:93327691 original size:29 final size:29
Alignment explanation
Indices: 93327622--93327696 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 29
93327612 AACATATGTA
*
93327622 TGACCAAAATATTAAATTTGATAACGTTAG
1 TGACCAAAATA-AAAATTTGATAACGTTAG
* *
93327652 TGACTAAAATAGAAAATTTTA-AAC-TTAAG
1 TGACCAAAATA-AAAATTTGATAACGTT-AG
93327681 TGACCAAAATAAAAAT
1 TGACCAAAATAAAAAT
93327697 ACACTAATAG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 7 0.18
29 15 0.38
30 17 0.44
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (29 bp):
TGACCAAAATAAAAATTTGATAACGTTAG
Found at i:93327974 original size:2 final size:2
Alignment explanation
Indices: 93327964--93328000 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
93327954 TATAATTTTT
*
93327964 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
93328001 TTGCATAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:93328611 original size:5 final size:5
Alignment explanation
Indices: 93328601--93328642 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
93328591 TTGCATTTTA
93328601 CATAC CATAC CATAC CATAC CATAC CATAC CATAC CATAC CA
1 CATAC CATAC CATAC CATAC CATAC CATAC CATAC CATAC CA
93328643 CTTTACAGGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.19
Consensus pattern (5 bp):
CATAC
Found at i:93334291 original size:17 final size:16
Alignment explanation
Indices: 93334269--93334304 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
93334259 ATTATAAAAA
93334269 TATATTTAATAATTTTT
1 TATATTTAA-AATTTTT
*
93334286 TATATTTTAAATTTTT
1 TATATTTAAAATTTTT
93334302 TAT
1 TAT
93334305 TCATAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATATTTAAAATTTTT
Found at i:93334642 original size:16 final size:17
Alignment explanation
Indices: 93334621--93334654 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
93334611 ATCAAATATT
*
93334621 TAAATATTAATAT-AAA
1 TAAATAATAATATCAAA
93334637 TAAATAATAATATCAAA
1 TAAATAATAATATCAAA
93334654 T
1 T
93334655 TATGTCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAATAATAATATCAAA
Found at i:93341298 original size:32 final size:33
Alignment explanation
Indices: 93341260--93341325 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
93341250 TAATATGTCT
*
93341260 ATTTTTTAAGTAAAAAG-ACAAAATACAATCTA
1 ATTTTTTAACTAAAAAGAACAAAATACAATCTA
*
93341292 ATTTTTTAACTAAAAAGAATAAAATACAATCTA
1 ATTTTTTAACTAAAAAGAACAAAATACAATCTA
93341325 A
1 A
93341326 CTCTTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.32
Consensus pattern (33 bp):
ATTTTTTAACTAAAAAGAACAAAATACAATCTA
Found at i:93345615 original size:30 final size:30
Alignment explanation
Indices: 93345581--93345640 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
93345571 TTCCCGAGCC
93345581 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
93345611 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
93345641 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:93353922 original size:14 final size:14
Alignment explanation
Indices: 93353905--93353943 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
93353895 TATACATTGT
*
93353905 TTTATTTAATAATA
1 TTTATTTAATAAAA
*
93353919 TTTATTTCATAAAA
1 TTTATTTAATAAAA
93353933 TTTA-TTAATAA
1 TTTATTTAATAA
93353944 CTTTCCATGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (14 bp):
TTTATTTAATAAAA
Found at i:93354455 original size:13 final size:13
Alignment explanation
Indices: 93354437--93354467 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
93354427 CACCATCCAT
93354437 CTCTGATCTTGAC
1 CTCTGATCTTGAC
93354450 CTCTGATCTTGAC
1 CTCTGATCTTGAC
*
93354463 TTCTG
1 CTCTG
93354468 TTGATACCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.29, G:0.16, T:0.42
Consensus pattern (13 bp):
CTCTGATCTTGAC
Found at i:93367485 original size:43 final size:42
Alignment explanation
Indices: 93367421--93367529 Score: 155
Period size: 43 Copynumber: 2.6 Consensus size: 42
93367411 AGGAGTTTCT
* *
93367421 GTTTAACCCTAATGGGTTTCCGTTCAACTCTTTTGAGCTTCA
1 GTTTAACCCTTATGGGTTTCCGTTCAACTCTTATGAGCTTCA
* *
93367463 GTTTAACCCTTATTGGGTTTCCGTTCAGCTCTTATGAGCTTCT
1 GTTTAACCCTTA-TGGGTTTCCGTTCAACTCTTATGAGCTTCA
* *
93367506 GTTAAACCCTTACGGGTTTCCGTT
1 GTTTAACCCTTATGGGTTTCCGTT
93367530 TAGCACTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 22 0.37
43 38 0.63
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (42 bp):
GTTTAACCCTTATGGGTTTCCGTTCAACTCTTATGAGCTTCA
Found at i:93367539 original size:42 final size:42
Alignment explanation
Indices: 93367417--93367549 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
93367407 TCATAGGAGT
* * *
93367417 TTCTGTTTAACCCTAATGGGTTTCCGTTCAACTCTTTTGAGC
1 TTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGC
*
93367459 TTCAGTTTAACCCTTATTGGGTTTCCGTTCAGCTCTTATGAGC
1 TTCTGTTTAACCCTTA-TGGGTTTCCGTTCAGCTCTTATGAGC
* * * * *
93367502 TTCTGTTAAACCCTTACGGGTTTCCGTTTAGCACTTATGTGC
1 TTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGC
93367544 TTCTGT
1 TTCTGT
93367550 GCAGTCTTCA
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 42 0.52
43 38 0.47
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (42 bp):
TTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGC
Found at i:93369400 original size:26 final size:26
Alignment explanation
Indices: 93369370--93369419 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
93369360 ATTTAAAGTA
93369370 TAAATAAATATATATAATATATAATT
1 TAAATAAATATATATAATATATAATT
* * *
93369396 TAAATATATCTTTATAATATATAA
1 TAAATAAATATATATAATATATAA
93369420 AATAATAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (26 bp):
TAAATAAATATATATAATATATAATT
Found at i:93369401 original size:13 final size:14
Alignment explanation
Indices: 93369382--93369419 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
93369372 AATAAATATA
93369382 TATAATATATAATT
1 TATAATATATAATT
*
93369396 TA-AATATAT-CTT
1 TATAATATATAATT
93369408 TATAATATATAA
1 TATAATATATAA
93369420 AATAATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
12 4 0.20
13 14 0.70
14 2 0.10
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
TATAATATATAATT
Found at i:93369785 original size:19 final size:20
Alignment explanation
Indices: 93369752--93369795 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
93369742 TGGTAATTTG
* *
93369752 AATTTTTTTAAAATATAATAT
1 AATTTTTTT-AAATAAAATAA
93369773 AATTTTTTT-AATAAAATAA
1 AATTTTTTTAAATAAAATAA
93369792 AATT
1 AATT
93369796 AACTTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
21 9 0.43
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATTTTTTTAAATAAAATAA
Found at i:93372390 original size:18 final size:18
Alignment explanation
Indices: 93372369--93372407 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
93372359 GCCGTGTGGG
*
93372369 CCACACGGGCATGTAAGC
1 CCACACAGGCATGTAAGC
* *
93372387 CCACACAGGCGTGTGAGC
1 CCACACAGGCATGTAAGC
93372405 CCA
1 CCA
93372408 ATTTTCCTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.36, G:0.28, T:0.10
Consensus pattern (18 bp):
CCACACAGGCATGTAAGC
Found at i:93379258 original size:40 final size:40
Alignment explanation
Indices: 93379214--93379302 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 40
93379204 TTACAGTACC
93379214 ACTTGGTGTGTAGGGCTGGATGAGTCGAT-TTTATCCCCAT
1 ACTTGGTGTGTAGGGCTGGATGAGTC-ATCTTTATCCCCAT
* * *
93379254 ACTTGGTGTGTAGGGCTGGGTGGGTCTTCTTTATCCCCAT
1 ACTTGGTGTGTAGGGCTGGATGAGTCATCTTTATCCCCAT
93379294 A--TGGTGTGT
1 ACTTGGTGTGT
93379303 TAGGTTGGAC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
38 8 0.18
39 1 0.02
40 36 0.80
ACGTcount: A:0.13, C:0.17, G:0.33, T:0.37
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGATGAGTCATCTTTATCCCCAT
Found at i:93393619 original size:21 final size:21
Alignment explanation
Indices: 93393594--93393646 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
93393584 CAACACATAA
*
93393594 GTGCCTAAAATGACACACGAG
1 GTGCCTGAAATGACACACGAG
* *
93393615 GTGCCTGATACGACACACGAG
1 GTGCCTGAAATGACACACGAG
93393636 GTGCCTGAAAT
1 GTGCCTGAAAT
93393647 ACGAAACATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.26, T:0.17
Consensus pattern (21 bp):
GTGCCTGAAATGACACACGAG
Found at i:93393648 original size:23 final size:22
Alignment explanation
Indices: 93393605--93393677 Score: 85
Period size: 23 Copynumber: 3.3 Consensus size: 22
93393595 TGCCTAAAAT
93393605 GACACACGAGGTGCCTG-ATAC
1 GACACACGAGGTGCCTGAATAC
93393626 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG-AATAC
* ** *
93393649 GAAACATAAAGTGCCTGATATAC
1 GACACACGAGGTGCCTGA-ATAC
93393672 GACACA
1 GACACA
93393678 TAAAGTGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
21 17 0.39
22 1 0.02
23 26 0.59
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.15
Consensus pattern (22 bp):
GACACACGAGGTGCCTGAATAC
Found at i:93393678 original size:23 final size:23
Alignment explanation
Indices: 93393615--93393690 Score: 84
Period size: 23 Copynumber: 3.4 Consensus size: 23
93393605 GACACACGAG
** *
93393615 GTGCCTG--ATACGACACACGAG
1 GTGCCTGATATACGACACATAAA
* *
93393636 GTGCCTGAAATACGAAACATAAA
1 GTGCCTGATATACGACACATAAA
93393659 GTGCCTGATATACGACACATAAA
1 GTGCCTGATATACGACACATAAA
*
93393682 GTGCTTGAT
1 GTGCCTGAT
93393691 CGGCAAAGCC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
21 7 0.15
23 39 0.85
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (23 bp):
GTGCCTGATATACGACACATAAA
Found at i:93394574 original size:14 final size:15
Alignment explanation
Indices: 93394546--93394578 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
93394536 TTGCGAATGG
93394546 CTTTTGCTATTCTTT
1 CTTTTGCTATTCTTT
93394561 CTTTTGCT-TTCTTT
1 CTTTTGCTATTCTTT
93394575 -TTTT
1 CTTTT
93394579 ATTTCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 6 0.33
15 8 0.44
ACGTcount: A:0.03, C:0.18, G:0.06, T:0.73
Consensus pattern (15 bp):
CTTTTGCTATTCTTT
Found at i:93394651 original size:12 final size:12
Alignment explanation
Indices: 93394636--93394664 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
93394626 GTTAATAATG
93394636 ATAATAATTATA
1 ATAATAATTATA
93394648 ATAATAATTATA
1 ATAATAATTATA
93394660 ATAAT
1 ATAAT
93394665 TATCTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATAATTATA
Found at i:93394970 original size:21 final size:20
Alignment explanation
Indices: 93394917--93394970 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
93394907 TAATAAATAA
*
93394917 TAAATATATAT-TTACTAAT
1 TAAATATATATATTACAAAT
93394936 TAAATATA-AGTATTACAAAT
1 TAAATATATA-TATTACAAAT
*
93394956 GTACATATATATATT
1 -TAAATATATATATT
93394971 TTTTTAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 1 0.03
19 9 0.31
20 7 0.24
21 11 0.38
22 1 0.03
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.43
Consensus pattern (20 bp):
TAAATATATATATTACAAAT
Found at i:93401582 original size:32 final size:32
Alignment explanation
Indices: 93401539--93401599 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
93401529 AAATGAAGAT
* *
93401539 TAACTCTCTTTTTTATGTTTATGTTAAACTAA
1 TAACTCCCTTTTTTATATTTATGTTAAACTAA
93401571 TAACTCCCTTTTTTATATTTATGTTAAAC
1 TAACTCCCTTTTTTATATTTATGTTAAAC
93401600 CAATCACTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.52
Consensus pattern (32 bp):
TAACTCCCTTTTTTATATTTATGTTAAACTAA
Found at i:93402223 original size:30 final size:30
Alignment explanation
Indices: 93402189--93402251 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
93402179 ACTTATTTTA
93402189 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
93402219 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
93402249 TTG
1 TTG
93402252 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:93402370 original size:18 final size:18
Alignment explanation
Indices: 93402334--93402371 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
93402324 GAAATATTTA
*
93402334 TTTTGATGTTTTTAGTAT
1 TTTTGATGTTTATAGTAT
93402352 TTTTGATGTATTATA-TAT
1 TTTTGATGT-TTATAGTAT
93402370 TT
1 TT
93402372 AAAAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (18 bp):
TTTTGATGTTTATAGTAT
Found at i:93409791 original size:5 final size:5
Alignment explanation
Indices: 93409781--93409811 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
93409771 AAGTATTTGC
*
93409781 TTATA TTATA TTAAA TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA T
93409812 AATTATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:93409798 original size:10 final size:10
Alignment explanation
Indices: 93409785--93409833 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
93409775 ATTTGCTTAT
93409785 ATTATATTAA
1 ATTATATTAA
*
93409795 ATTATATTAT
1 ATTATATTAA
93409805 ATTATA-T-A
1 ATTATATTAA
* *
93409813 ATTATAATAC
1 ATTATATTAA
93409823 ATTA-ATTAA
1 ATTATATTAA
93409832 AT
1 AT
93409834 AAAGGATGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
8 6 0.19
9 7 0.22
10 19 0.59
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (10 bp):
ATTATATTAA
Found at i:93415805 original size:24 final size:24
Alignment explanation
Indices: 93415777--93415823 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
93415767 TTCATGTTAT
*
93415777 TTTCAA-AAATAATTTTTTATAATA
1 TTTCAATAAA-AATTTTGTATAATA
93415801 TTTCAATAAAAATTTTGTATAAT
1 TTTCAATAAAAATTTTGTATAAT
93415824 TATGAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (24 bp):
TTTCAATAAAAATTTTGTATAATA
Found at i:93419811 original size:52 final size:52
Alignment explanation
Indices: 93419749--93419859 Score: 204
Period size: 52 Copynumber: 2.1 Consensus size: 52
93419739 TTTAGTATTA
*
93419749 TTTAAGTATAAAAAAATAATTAATGTATTTTTAATTTATTAGGAAGCATTTAT
1 TTTAA-TATAAAAAAATAATTAATGTATTTTCAATTTATTAGGAAGCATTTAT
93419802 TTTAATATAAAAAAATAATTAATGTATTTTCAATTTATTAGGAAGCATTTAT
1 TTTAATATAAAAAAATAATTAATGTATTTTCAATTTATTAGGAAGCATTTAT
93419854 TTTAAT
1 TTTAAT
93419860 GTTTTCAATG
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 52 0.91
53 5 0.09
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (52 bp):
TTTAATATAAAAAAATAATTAATGTATTTTCAATTTATTAGGAAGCATTTAT
Found at i:93421367 original size:17 final size:17
Alignment explanation
Indices: 93421310--93421374 Score: 62
Period size: 17 Copynumber: 3.8 Consensus size: 17
93421300 CATTTAACTA
93421310 TTTAATTTT-ATTA-TT
1 TTTAATTTTAATTATTT
93421325 TTTAATCATTTAATTATTT
1 TTTAAT--TTTAATTATTT
** *
93421344 TAAAATTTTAAATATTT
1 TTTAATTTTAATTATTT
93421361 TTTAATTTATAATT
1 TTTAATTT-TAATT
93421375 TTTCATAATC
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
15 6 0.15
17 19 0.49
18 8 0.21
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTAATTTTAATTATTT
Found at i:93422972 original size:48 final size:50
Alignment explanation
Indices: 93422896--93423042 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
93422886 ATATGACCTA
**
93422896 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
93422944 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
93422998 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
93423043 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:93423278 original size:147 final size:147
Alignment explanation
Indices: 93423099--93423843 Score: 629
Period size: 140 Copynumber: 5.1 Consensus size: 147
93423089 TCAACTCACC
93423099 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
93423164 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTCTTGAGGC
93423229 TCAACTCACCTCTCGCAA
130 TCAACTCACCTCTCGCAA
* *
93423247 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAATGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
93423312 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
93423370 CAACTCACCTCTCGCCA
131 CAACTCACCTCTCGCAA
93423387 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGT-TTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
93423451 CACCTCTCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTCT
* * * *
93423509 TGAGGCTTAACT--CGTCTTG-AG
124 TGAGGCTCAACTCACCTCTCGCAA
** * * * * * * * * * * ** * ** ** *
93423530 GCTCAACTCGCCTCTCGCAATATGAGTTGATTTTGAAACAT-AAATTGAAATT-A-CCTCAACGT
1 TAT-GAGTTG-ATTTTGAAACATAAATTGAAATT---ACCTCAACGTG-TCTTGAGGCTCAAC--
* * * * * *** *
93423592 GTCTTGAGGCTCAACTCGC-CTCTCGCAATATGA-GTTG-ATTTTGAAA--CATAAATTGAAATT
58 -TC---A--C-C-TCTCGCAATAT-G-AGT-TGATTTTGAAACAT-AAATTGA-AAATTGAAATT
93423652 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
110 ACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
*
93423690 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
93423755 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
93423813 CAACTCACCTCTCGTAA
131 CAACTCACCTCTCGCAA
*
93423830 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
93423844 CTGTCACTTG
Statistics
Matches: 481, Mismatches: 71, Indels: 98
0.74 0.11 0.15
Matches are distributed among these distances:
138 7 0.01
140 138 0.29
141 5 0.01
142 4 0.01
143 4 0.01
144 9 0.02
145 9 0.02
146 87 0.18
147 105 0.22
148 14 0.03
149 4 0.01
150 7 0.01
151 6 0.01
152 3 0.01
154 2 0.00
155 6 0.01
156 5 0.01
157 42 0.09
158 14 0.03
159 8 0.02
160 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (147 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTCTTGAGGCT
CAACTCACCTCTCGCAA
Found at i:93423311 original size:70 final size:70
Alignment explanation
Indices: 93423198--93423843 Score: 549
Period size: 70 Copynumber: 8.9 Consensus size: 70
93423188 CATAAATTGA
*
93423198 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
93423263 AACAT
66 AACAT
* *
93423268 AAATTGAAATTACCTCAATGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
93423333 AACAT
66 AACAT
*
93423338 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
93423403 AACATAAATT
66 AAC----A-T
93423413 GAAAATTGAAATTACCTCAACGTGT-TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93423477 GAAACAT
64 GAAACAT
* * * *** * * * * * *
93423484 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACT--CGTCTTG-AGGCTCAACTCGCCTCTC
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT-GAGTTG-ATTTT
* *
93423546 GCAATAT
64 GAAACAT
* * ** * ** ** * * * *
93423553 GAGTTGATTTTGAAACAT-AAATTGAAATT-A-CCTCAACGTGTCTTGAGGCTCAACTCGC-CTC
1 AAATTGAAATT---ACCTCAACGTG-TCTTGAGGCTCAAC---TC---A--C-C-TCTCGCAATA
* * ***
93423614 TCGCAATATGA-GTTG-ATTTT
52 T-G-AGT-TGATTTTGAAACAT
*
93423634 GAAACAT-AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 -AAA-TTGAAA------TTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
93423698 GATTTTGAAACAT
58 GATTTTGAAACAT
*
93423711 AAATTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
93423776 AACAT
66 AACAT
* *
93423781 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93423844 CTGTCACTTG
Statistics
Matches: 463, Mismatches: 69, Indels: 88
0.75 0.11 0.14
Matches are distributed among these distances:
67 2 0.00
68 8 0.02
69 37 0.08
70 269 0.58
71 6 0.01
72 6 0.01
73 1 0.00
74 1 0.00
75 5 0.01
76 54 0.12
77 31 0.07
78 3 0.01
79 1 0.00
80 1 0.00
81 4 0.01
82 10 0.02
83 3 0.01
84 3 0.01
85 5 0.01
86 5 0.01
87 6 0.01
88 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:93423488 original size:140 final size:137
Alignment explanation
Indices: 93423199--93423521 Score: 477
Period size: 146 Copynumber: 2.3 Consensus size: 137
93423189 ATAAATTGAA
*
93423199 AATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAA
1 AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAA
* *
93423264 ACATAAATTGAAATTACCTCAATGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATT
66 ACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
93423329 TTGAAAC
131 TTGAAAC
*
93423336 ATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTT
1 ---AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93423401 GAAACATAAATTGAAAATTGAAATTACCTCAACGTGT-TTGAGGCTCAACTCACCTCTCGCAATA
63 GAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
93423465 TGAGTTGATTTTGAAAC
121 TGAGTTGATTTTGAAAC
*
93423482 ATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTC
1 ---AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
93423522 GTCTTGAGGC
Statistics
Matches: 171, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
140 65 0.38
144 1 0.01
145 1 0.01
146 82 0.48
147 22 0.13
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (137 bp):
AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAA
ACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTGAAAC
Found at i:93423527 original size:17 final size:17
Alignment explanation
Indices: 93423505--93423539 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
93423495 ACCTCAACGT
*
93423505 GTCTTGAGGCTTAACTC
1 GTCTTGAGGCTCAACTC
93423522 GTCTTGAGGCTCAACTC
1 GTCTTGAGGCTCAACTC
93423539 G
1 G
93423540 CCTCTCGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.26, G:0.26, T:0.31
Consensus pattern (17 bp):
GTCTTGAGGCTCAACTC
Found at i:93423584 original size:87 final size:87
Alignment explanation
Indices: 93423438--93423609 Score: 326
Period size: 87 Copynumber: 2.0 Consensus size: 87
93423428 CTCAACGTGT
93423438 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAAC
1 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAAC
*
93423503 GTGTCTTGAGGCTTAACTCGTC
66 GTGTCTTGAGGCTCAACTCGTC
*
93423525 TTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAAC
1 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAAC
93423590 GTGTCTTGAGGCTCAACTCG
66 GTGTCTTGAGGCTCAACTCG
93423610 CCTCTCGCAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 83 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (87 bp):
TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAAC
GTGTCTTGAGGCTCAACTCGTC
Found at i:93423785 original size:373 final size:370
Alignment explanation
Indices: 93423142--93423843 Score: 1187
Period size: 373 Copynumber: 1.9 Consensus size: 370
93423132 ACCTCAACGT
*
93423142 GTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAA
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAC---AATT-AAAATTGAAA
*
93423207 TTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAAT
62 TTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAAT
* *
93423272 TGAAATTACCTCAATGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGAAACA
127 TGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACA
* *
93423337 TAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTG
192 TAAATTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
93423402 AAACATAAATTGAAAATTGAAATTACCTCAACGTGT-TTGAGGCTCAACTCACCTCTCGCAATAT
257 AAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
93423466 GAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTC
315 GAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTC
*
93423522 GTCTTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTGAAAC-A-T-AAATTGAAATTAC
1 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACAATTAAAATTGAAATTAC
*
93423584 CTCAACGTGTCTTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAA
66 CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAA
93423649 ATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAA
131 ATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAA
93423714 TTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAC
196 TTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAC
* *
93423779 ATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATGTGAGTTGATTTT
261 ATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
93423844 CTGTCACTTG
Statistics
Matches: 311, Mismatches: 10, Indels: 15
0.93 0.03 0.04
Matches are distributed among these distances:
366 23 0.07
367 37 0.12
368 1 0.00
369 1 0.00
373 202 0.65
375 1 0.00
376 1 0.00
380 45 0.14
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (370 bp):
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACAATTAAAATTGAAATTAC
CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAA
ATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAA
TTGAAATTACCTCAACGTGTCTTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAC
ATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
GAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTC
Done.