Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 315 of 328
Found at i:93432211 original size:47 final size:47
Alignment explanation
Indices: 93432102--93432212 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
93432092 CCGGGATAAG
*
93432102 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
93432149 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
93432196 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
93432213 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:93432983 original size:4 final size:4
Alignment explanation
Indices: 93432969--93433002 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
93432959 AAATTTCCCT
*
93432969 TTTC TTTTC TTTC TTTC TTTC CTTC TTTC TTTC T
1 TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
93433003 CACGTTTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTC
Found at i:93439467 original size:47 final size:47
Alignment explanation
Indices: 93439358--93439468 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
93439348 CCGGGATAAG
*
93439358 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
93439405 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
93439452 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
93439469 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:93451454 original size:37 final size:35
Alignment explanation
Indices: 93451404--93451512 Score: 89
Period size: 37 Copynumber: 3.0 Consensus size: 35
93451394 ATTCCAAAAA
*
93451404 AATATTATTTTAATAGT-TTAATATTAAATTTAATGT
1 AATATTATCTTAATAGTATT-ATATT-AATTTAATGT
* *
93451440 AATACTTATCTTAATAGTATTTTATTAATTTAATATT
1 AATA-TTATCTTAATAGTATTATATTAATTTAAT-GT
* *
93451477 AAAATGATTATCTTAATATTA-AAT-TTAATTTAATGT
1 --AAT-ATTATCTTAATAGTATTATATTAATTTAATGT
93451513 TTATCTTATA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
36 13 0.22
37 27 0.45
38 3 0.05
39 16 0.27
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (35 bp):
AATATTATCTTAATAGTATTATATTAATTTAATGT
Found at i:93451577 original size:20 final size:19
Alignment explanation
Indices: 93451552--93451592 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
93451542 TAATAAGATT
93451552 TAATATTAAATTTAATCTAA
1 TAATATTAAA-TTAATCTAA
* *
93451572 TAATATTATATTAATTTAA
1 TAATATTAAATTAATCTAA
93451591 TA
1 TA
93451593 TTAAAGTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATATTAAATTAATCTAA
Found at i:93456787 original size:17 final size:18
Alignment explanation
Indices: 93456756--93456789 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
93456746 TTAGATTTTA
*
93456756 TTATATTTATGTTTTATC
1 TTATATTTATATTTTATC
93456774 TTAT-TTTATATTTTAT
1 TTATATTTATATTTTAT
93456790 AATTTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
TTATATTTATATTTTATC
Found at i:93456896 original size:23 final size:23
Alignment explanation
Indices: 93456870--93456915 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
93456860 AAGGTGGTAT
*
93456870 AATTACCACTTTAGTCCTTTGTC
1 AATTACCACTTCAGTCCTTTGTC
93456893 AATTACCACTTCAGTCCTTTGTC
1 AATTACCACTTCAGTCCTTTGTC
93456916 CATATTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.09, T:0.41
Consensus pattern (23 bp):
AATTACCACTTCAGTCCTTTGTC
Found at i:93459783 original size:93 final size:93
Alignment explanation
Indices: 93459676--93459846 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
93459666 GCCCCTAAGT
* *
93459676 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93459741 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
93459769 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93459834 CGAGTTCGGATGC
66 CGAGTTCGGATGC
93459847 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:93459843 original size:46 final size:46
Alignment explanation
Indices: 93459671--93459843 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
93459661 AACTCGCCCC
* * *
93459671 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
93459717 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
93459765 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
93459810 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93459844 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:93460304 original size:30 final size:30
Alignment explanation
Indices: 93460270--93460329 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
93460260 ATTTAATACG
*
93460270 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGACCCTA
*** *
93460300 AACTTTTGCATAATTACACTTTTGACCCTA
1 AACTTTAAAAAAATTACACTTTTGACCCTA
93460330 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGACCCTA
Found at i:93461522 original size:49 final size:49
Alignment explanation
Indices: 93461426--93461567 Score: 160
Period size: 49 Copynumber: 2.9 Consensus size: 49
93461416 ATGGTATTAA
* * *
93461426 ACTTGAACCCATGACTGTATAACCACCGTCAACTAGGGA-CCCAAGTTAT
1 ACTTCAACCCATGACCGCATAACCACCGTCAACT-GGGAGCCCAAGTTAT
* ** *
93461475 GCTTCAACCTGTGACCGCATAACCACCGTCAACTGGGAGCCCTAGTTAT
1 ACTTCAACCCATGACCGCATAACCACCGTCAACTGGGAGCCCAAGTTAT
* * * * *
93461524 ACTTCAACCCATGATCGTATAACCATCGTGAACTGGAAGCCCAA
1 ACTTCAACCCATGACCGCATAACCACCGTCAACTGGGAGCCCAA
93461568 ATAGCAATGC
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 4 0.05
49 72 0.95
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (49 bp):
ACTTCAACCCATGACCGCATAACCACCGTCAACTGGGAGCCCAAGTTAT
Found at i:93465021 original size:25 final size:25
Alignment explanation
Indices: 93464987--93465047 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 25
93464977 AAAAATGTCT
*
93464987 AGAAATTTTCT-GAAATAATCTCTTC
1 AGAAATTTTCTAG-AATAATCCCTTC
*
93465012 AGAAACTTTCTAGAATAATCCCTTC
1 AGAAATTTTCTAGAATAATCCCTTC
93465037 AGAAATTTTCT
1 AGAAATTTTCT
93465048 CTCTACAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (25 bp):
AGAAATTTTCTAGAATAATCCCTTC
Found at i:93465222 original size:62 final size:62
Alignment explanation
Indices: 93465149--93465345 Score: 322
Period size: 62 Copynumber: 3.2 Consensus size: 62
93465139 ACTTAATCAC
93465149 TTTAATATTAAATCTTATTAAAATAATAGAATGTTTATCTACAAAATAAAGATTAAATTTAA
1 TTTAATATTAAATCTTATTAAAATAATAGAATGTTTATCTACAAAATAAAGATTAAATTTAA
*
93465211 TTTAATATTAAATCTTATTAAAATAATAGAATGTTTATCTACAAAATAAAGATTGAATTTAA
1 TTTAATATTAAATCTTATTAAAATAATAGAATGTTTATCTACAAAATAAAGATTAAATTTAA
* ** * * * *
93465273 TTTAATATTAAATCTTATTAAAATAATAGATTAATTATCTACAAGATGAACATTAAATTAAA
1 TTTAATATTAAATCTTATTAAAATAATAGAATGTTTATCTACAAAATAAAGATTAAATTTAA
93465335 TTTAATATTAA
1 TTTAATATTAA
93465346 GATAATCAAT
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 126 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (62 bp):
TTTAATATTAAATCTTATTAAAATAATAGAATGTTTATCTACAAAATAAAGATTAAATTTAA
Found at i:93465882 original size:9 final size:9
Alignment explanation
Indices: 93465851--93465890 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
93465841 AAAATATCAT
93465851 ATTAATTTTA
1 ATTAA-TTTA
* *
93465861 ATTGATTTG
1 ATTAATTTA
93465870 ATTAATTTA
1 ATTAATTTA
93465879 ATTAATTTA
1 ATTAATTTA
93465888 ATT
1 ATT
93465891 TTACTTGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 22 0.85
10 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (9 bp):
ATTAATTTA
Found at i:93467058 original size:15 final size:15
Alignment explanation
Indices: 93467034--93467065 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
93467024 TATGCATGCA
*
93467034 AAATATAAAAGACAT
1 AAATACAAAAGACAT
93467049 AAATACAAAAGACAT
1 AAATACAAAAGACAT
93467064 AA
1 AA
93467066 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:93473839 original size:25 final size:25
Alignment explanation
Indices: 93473783--93473839 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
93473773 ATATTCTTAA
***
93473783 CTTTTTTTTTCATTCTCTTCTGTTT
1 CTTTTTTTTTCATTCTCTTCTCCAT
*
93473808 CTCTTTTTTTT-TTTCTCTTCTCCAT
1 CT-TTTTTTTTCATTCTCTTCTCCAT
93473833 CTTTTTT
1 CTTTTTT
93473840 AGTATTTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 5 0.19
25 14 0.52
26 8 0.30
ACGTcount: A:0.04, C:0.23, G:0.02, T:0.72
Consensus pattern (25 bp):
CTTTTTTTTTCATTCTCTTCTCCAT
Found at i:93477600 original size:1 final size:1
Alignment explanation
Indices: 93477594--93477619 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
93477584 GCTAACATGG
93477594 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
93477620 ACTTTTGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:93488308 original size:47 final size:47
Alignment explanation
Indices: 93488199--93488309 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
93488189 TCCGGATAAG
*
93488199 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
93488246 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
93488293 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
93488310 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:93495518 original size:47 final size:47
Alignment explanation
Indices: 93495409--93495519 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
93495399 CCGGGATAAG
*
93495409 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
93495456 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
93495503 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
93495520 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:93500060 original size:47 final size:47
Alignment explanation
Indices: 93499951--93500061 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
93499941 CCGGGATAAG
*
93499951 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
93499998 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
93500045 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
93500062 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:93502114 original size:21 final size:21
Alignment explanation
Indices: 93502090--93502164 Score: 141
Period size: 21 Copynumber: 3.6 Consensus size: 21
93502080 ATGTAATCAA
93502090 ATCAATTAAATTGATGACTTC
1 ATCAATTAAATTGATGACTTC
93502111 ATCAATTAAATTGATGACTTC
1 ATCAATTAAATTGATGACTTC
93502132 ATCAATTAAATTGATGACTTC
1 ATCAATTAAATTGATGACTTC
*
93502153 ATCAATTCAATT
1 ATCAATTAAATT
93502165 ACCAATCTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.39
Consensus pattern (21 bp):
ATCAATTAAATTGATGACTTC
Found at i:93507021 original size:4 final size:4
Alignment explanation
Indices: 93507012--93507044 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
93507002 TTTGAGTTCA
*
93507012 ATAC ATAC ATAC ATAC ACAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
93507045 CGATTTGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (4 bp):
ATAC
Found at i:93507035 original size:16 final size:16
Alignment explanation
Indices: 93507014--93507045 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
93507004 TGAGTTCAAT
93507014 ACATACATACATACAC
1 ACATACATACATACAC
93507030 ACATACATACATACAC
1 ACATACATACATACAC
93507046 GATTTGTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (16 bp):
ACATACATACATACAC
Found at i:93507974 original size:20 final size:21
Alignment explanation
Indices: 93507949--93507993 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
93507939 TTATAACTTC
*
93507949 ATATTGCTAGAGTGTATATA-
1 ATATTGCTAGAGTATATATAT
93507969 ATATTGCTAGAGTATATATAT
1 ATATTGCTAGAGTATATATAT
93507990 ATAT
1 ATAT
93507994 ATCTTTGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.16, T:0.42
Consensus pattern (21 bp):
ATATTGCTAGAGTATATATAT
Found at i:93510015 original size:29 final size:30
Alignment explanation
Indices: 93509981--93510044 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
93509971 TAATAATATT
* * *
93509981 TATTTATTTTAAATAAAAATAAA-TTAATA
1 TATTTATCTCAAATAAAAATAAATTTAAAA
* *
93510010 TATTTATCTCAATTGAAAATAAATTTAAAA
1 TATTTATCTCAAATAAAAATAAATTTAAAA
93510040 TATTT
1 TATTT
93510045 TATATGTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (30 bp):
TATTTATCTCAAATAAAAATAAATTTAAAA
Found at i:93512312 original size:18 final size:17
Alignment explanation
Indices: 93512289--93512322 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
93512279 AATTTAACTT
93512289 TAATTAAATTACTTAAAA
1 TAATTAAATTA-TTAAAA
*
93512307 TAATTAATTTATTAAA
1 TAATTAAATTATTAAA
93512323 TTATAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTAAATTATTAAAA
Found at i:93520280 original size:21 final size:19
Alignment explanation
Indices: 93520241--93520280 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
93520231 ATTTACTTTT
*
93520241 AATATAATAATTCAAAATA
1 AATATAATAATTAAAAATA
93520260 AATATAATAATATTAAAAATA
1 AATATAAT-A-ATTAAAAATA
93520281 CATTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 1 0.06
21 9 0.50
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
AATATAATAATTAAAAATA
Found at i:93521494 original size:17 final size:18
Alignment explanation
Indices: 93521441--93521566 Score: 175
Period size: 19 Copynumber: 6.9 Consensus size: 18
93521431 AATCATATCT
*
93521441 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
93521460 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
93521478 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
93521495 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
93521513 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
93521530 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
93521549 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
93521567 TGAAGATTAT
Statistics
Matches: 97, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 33 0.34
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:93521499 original size:35 final size:35
Alignment explanation
Indices: 93521441--93521558 Score: 200
Period size: 35 Copynumber: 3.3 Consensus size: 35
93521431 AATCATATCT
93521441 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
93521478 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
93521513 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
93521549 TCTAAGATTG
1 TCTAAGATTG
93521559 CATATCATTG
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 54 0.68
36 15 0.19
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:93521574 original size:17 final size:18
Alignment explanation
Indices: 93521441--93521563 Score: 96
Period size: 17 Copynumber: 6.8 Consensus size: 18
93521431 AATCATATCT
* *
93521441 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
93521460 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
93521478 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
93521495 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
93521513 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
93521530 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
93521549 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
93521564 CATTGAAGAT
Statistics
Matches: 96, Mismatches: 2, Indels: 12
0.87 0.02 0.11
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 32 0.33
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:93522417 original size:207 final size:206
Alignment explanation
Indices: 93521960--93522673 Score: 1133
Period size: 207 Copynumber: 3.5 Consensus size: 206
93521950 AAATCTGCTT
* * *
93521960 CTTCAATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * * *
93522025 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATATT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAA-GATGCCAAACCATCTT
* * * ** * * * *
93522090 GGATC-TGCTTCAGTCTAATCATCTAAAGGTTAGATCTGTTATATCTCTGTCCTCCGTCGAATAT
130 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
*
93522154 GGAGACACCAAA
195 GGAGACGCCAAA
*
93522166 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
93522231 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAA-GATGCCAAACCATCTT
*
93522296 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACCCTCCGTCGAATAT
130 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
93522361 GGAGACGCCAAA
195 GGAGACGCCAAA
* *
93522373 CTTCGATTTGTTCTCTGACAATACAGAGATGTCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
93522438 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTC
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAG-ATGCCAAACCATCTT
* *
93522503 GGATTTTACTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
130 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
93522568 GGAGACGCCAAA
195 GGAGACGCCAAA
* * * * *
93522580 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAT
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
93522645 GTGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
93522674 CTGCTCTCCA
Statistics
Matches: 474, Mismatches: 32, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
206 127 0.27
207 347 0.73
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (206 bp):
CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGATGCCAAACCATCTTG
GATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGACGCCAAA
Found at i:93523061 original size:84 final size:84
Alignment explanation
Indices: 93522798--93523088 Score: 415
Period size: 84 Copynumber: 3.4 Consensus size: 84
93522788 TCTGCTATAC
*
93522798 TTTAACCTGTTACCCTACTACTTAGGGG-TTAAGGCGCA-TCTTCGATCTGCTCCACTACTGCTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCTTCGATCTGCTCCACTACTGCTT
**
93522861 AGGGAGATAAGATCCACAAT
65 AGGGAGATAAGATCTGCAAT
* * ** *
93522881 TTTGACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTTGATCTATTCCGCTACTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGC
*
93522946 TTAGGGAGATAAGATCTGTAAT
63 TTAGGGAGATAAGATCTGCAAT
* *
93522968 TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
*
93523033 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTGCAAT
*
93523052 TTTAACCTGTTACCTTACTGCTTAGGGGATTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
93523089 CCGAATTTTG
Statistics
Matches: 182, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
83 27 0.15
84 80 0.44
85 1 0.01
86 1 0.01
87 73 0.40
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTGCAAT
Found at i:93524027 original size:1 final size:1
Alignment explanation
Indices: 93524021--93524090 Score: 59
Period size: 1 Copynumber: 70.0 Consensus size: 1
93524011 GGCCTCTCCA
* * * * * * * * *
93524021 TTTTTTTTTTTCTTTTTTCTTTTTTTTCTCTTTTTATTTTATTTTTTTCTTTTTTTTCTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
93524086 TTTTT
1 TTTTT
93524091 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:93524067 original size:30 final size:30
Alignment explanation
Indices: 93524021--93524090 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 30
93524011 GGCCTCTCCA
*
93524021 TTTTTTTTTTTCTTTTTTCTTTTTTTTC-TC
1 TTTTTTTTTAT-TTTTTTCTTTTTTTTCTTC
93524051 TTTTTATTTTATTTTTTTCTTTTTTTTCTTC
1 TTTTT-TTTTATTTTTTTCTTTTTTTTCTTC
93524082 TTTTTTTTT
1 TTTTTTTTT
93524091 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 25 0.68
31 12 0.32
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (30 bp):
TTTTTTTTTATTTTTTTCTTTTTTTTCTTC
Found at i:93529851 original size:17 final size:18
Alignment explanation
Indices: 93529798--93529914 Score: 166
Period size: 17 Copynumber: 6.5 Consensus size: 18
93529788 AATCATATCT
*
93529798 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
93529817 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
93529835 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
93529852 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
93529870 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
93529887 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
93529906 TCTAAGATT
1 TCTAAGATT
93529915 ACATATCATT
Statistics
Matches: 89, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
17 32 0.36
18 32 0.36
19 25 0.28
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:93529856 original size:35 final size:35
Alignment explanation
Indices: 93529798--93529914 Score: 198
Period size: 35 Copynumber: 3.3 Consensus size: 35
93529788 AATCATATCT
93529798 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
93529835 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
93529870 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
93529906 TCTAAGATT
1 TCTAAGATT
93529915 ACATATCATT
Statistics
Matches: 78, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 54 0.69
36 14 0.18
37 10 0.13
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:93532532 original size:32 final size:30
Alignment explanation
Indices: 93532463--93532532 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 30
93532453 TATAGTTTAG
93532463 GATAAAAAATTATTAAAATTATATATTAAT
1 GATAAAAAATTATTAAAATTATATATTAAT
* *
93532493 GATATAAAAAATATTAAAATTTTATTATATAATT
1 GATA-AAAAATTATTAAAATTATA-TAT-TAA-T
93532527 GATAAA
1 GATAAA
93532533 GGACTATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 4 0.12
31 17 0.50
32 3 0.09
33 5 0.15
34 5 0.15
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (30 bp):
GATAAAAAATTATTAAAATTATATATTAAT
Found at i:93534248 original size:17 final size:17
Alignment explanation
Indices: 93534212--93534266 Score: 76
Period size: 18 Copynumber: 3.2 Consensus size: 17
93534202 ATTAAAATTT
*
93534212 AAAATTTTAAAAATAAA
1 AAAATTTTAAAAATATA
93534229 AAATATTTTAAAAAT-TA
1 AAA-ATTTTAAAAATATA
93534246 AAAATTATTAAAAATATA
1 AAAATT-TTAAAAATATA
93534264 AAA
1 AAA
93534267 TAAGTGTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
16 3 0.09
17 15 0.44
18 16 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATTTTAAAAATATA
Found at i:93534267 original size:17 final size:16
Alignment explanation
Indices: 93534205--93534267 Score: 65
Period size: 17 Copynumber: 3.8 Consensus size: 16
93534195 ATAATTAATT
*
93534205 AAAATTTAAAATTTTA
1 AAAATATAAAATTTTA
*
93534221 AAAATAAAAAATATTTTA
1 AAAAT-ATAAA-ATTTTA
93534239 AAAAT-TAAAAATTATTA
1 AAAATAT-AAAATT-TTA
93534256 AAAATATAAAAT
1 AAAATATAAAAT
93534268 AAGTGTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
16 8 0.21
17 19 0.49
18 12 0.31
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATATAAAATTTTA
Found at i:93536344 original size:2 final size:2
Alignment explanation
Indices: 93536337--93536366 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
93536327 GCCGGTAAAT
93536337 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
93536367 ATCTTTTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:93537414 original size:13 final size:13
Alignment explanation
Indices: 93537396--93537423 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
93537386 AATCAGGGCA
93537396 TAGAGGAAAAAGG
1 TAGAGGAAAAAGG
93537409 TAGAGGAAAAAGG
1 TAGAGGAAAAAGG
93537422 TA
1 TA
93537424 AAGAGTTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.36, T:0.11
Consensus pattern (13 bp):
TAGAGGAAAAAGG
Found at i:93547397 original size:18 final size:18
Alignment explanation
Indices: 93547374--93547460 Score: 124
Period size: 18 Copynumber: 4.9 Consensus size: 18
93547364 CCCAACTACT
*
93547374 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
93547392 GTATACGTGAATAGT--C
1 GTATACGTGAATAGTACC
* *
93547408 ATATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
93547426 GTATACGTGAATAGTATC
1 GTATACGTGAATAGTACC
93547444 GTATACGTGAATAGTAC
1 GTATACGTGAATAGTAC
93547461 GTAAACGGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
16 15 0.25
18 46 0.75
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:93547418 original size:34 final size:35
Alignment explanation
Indices: 93547375--93547460 Score: 129
Period size: 34 Copynumber: 2.5 Consensus size: 35
93547365 CCAACTACTG
*
93547375 TATACGTGAACAGTACCGTATACGTGAATAG-TCA
1 TATACGTGAATAGTACCGTATACGTGAATAGATCA
* *
93547409 TATACGTGAATAGTGCCGTATACGTGAATAGTATCG
1 TATACGTGAATAGTACCGTATACGTGAATAG-ATCA
93547445 TATACGTGAATAGTAC
1 TATACGTGAATAGTAC
93547461 GTAAACGGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
34 29 0.63
36 17 0.37
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (35 bp):
TATACGTGAATAGTACCGTATACGTGAATAGATCA
Found at i:93550759 original size:18 final size:20
Alignment explanation
Indices: 93550724--93550760 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93550714 GAATTTAAGG
*
93550724 TTAGTATATATGATTTTTTT
1 TTAGCATATATGATTTTTTT
93550744 TTAGCATATAT-ATTTTT
1 TTAGCATATATGATTTTT
93550761 GAAATAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (20 bp):
TTAGCATATATGATTTTTTT
Found at i:93554323 original size:70 final size:71
Alignment explanation
Indices: 93554199--93554338 Score: 194
Period size: 70 Copynumber: 2.0 Consensus size: 71
93554189 ACTAATTTTG
*
93554199 TAATTTTGTAATCAGAAAACTCGATACTATATATTTATATTAATTAAAAGAGAAATGAA-TGTAT
1 TAATTTTGTAATCAGAAAACTCGATACTAGATA-TTATATTAATTAAAAGAGAAA-GAATTGTAT
93554263 GAAACTGT
64 GAAACTGT
* * * * *
93554271 TAATTTTGTAATTAGAGAATTCGATAGTAGATA-TCTATTAATTAAAAGAGAAAGAATTGTATGA
1 TAATTTTGTAATCAGAAAACTCGATACTAGATATTATATTAATTAAAAGAGAAAGAATTGTATGA
93554335 AACT
66 AACT
93554339 ATGATTCCAC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
69 3 0.05
70 30 0.49
72 28 0.46
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (71 bp):
TAATTTTGTAATCAGAAAACTCGATACTAGATATTATATTAATTAAAAGAGAAAGAATTGTATGA
AACTGT
Found at i:93558957 original size:74 final size:74
Alignment explanation
Indices: 93558836--93558981 Score: 292
Period size: 74 Copynumber: 2.0 Consensus size: 74
93558826 TAAGAGGTAT
93558836 ACACTTCTCGTTCAGACTATTTGCCTTTTACTCGTAAAGAAATGAAATTCTATTATTAGACTTGA
1 ACACTTCTCGTTCAGACTATTTGCCTTTTACTCGTAAAGAAATGAAATTCTATTATTAGACTTGA
93558901 AAAAAATAG
66 AAAAAATAG
93558910 ACACTTCTCGTTCAGACTATTTGCCTTTTACTCGTAAAGAAATGAAATTCTATTATTAGACTTGA
1 ACACTTCTCGTTCAGACTATTTGCCTTTTACTCGTAAAGAAATGAAATTCTATTATTAGACTTGA
93558975 AAAAAAT
66 AAAAAAT
93558982 GATCCTGACA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (74 bp):
ACACTTCTCGTTCAGACTATTTGCCTTTTACTCGTAAAGAAATGAAATTCTATTATTAGACTTGA
AAAAAATAG
Found at i:93560676 original size:33 final size:33
Alignment explanation
Indices: 93560639--93560704 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
93560629 AGATAAATTC
93560639 ATTTCATTATAATCATTTATCTCATAAAAAATA
1 ATTTCATTATAATCATTTATCTCATAAAAAATA
*
93560672 ATTTCGTTATAATCATTTATCTCATAAAAAATA
1 ATTTCATTATAATCATTTATCTCATAAAAAATA
93560705 TCATTGACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (33 bp):
ATTTCATTATAATCATTTATCTCATAAAAAATA
Found at i:93565500 original size:16 final size:16
Alignment explanation
Indices: 93565479--93565509 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
93565469 CTATATATAT
93565479 AAATAGAATTAAATGA
1 AAATAGAATTAAATGA
93565495 AAATAGAATTAAATG
1 AAATAGAATTAAATG
93565510 TATTGAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (16 bp):
AAATAGAATTAAATGA
Found at i:93569263 original size:47 final size:47
Alignment explanation
Indices: 93569154--93569264 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
93569144 CCGGGATAAG
*
93569154 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
93569201 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
93569248 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
93569265 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:93571510 original size:15 final size:15
Alignment explanation
Indices: 93571475--93571517 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
93571465 TCTATATATC
*
93571475 ATTATATTAAATTATT
1 ATTATATT-ATTTATT
* *
93571491 TTTATCTTATTTATT
1 ATTATATTATTTATT
93571506 ATTATATTATTT
1 ATTATATTATTT
93571518 TTAAAATATT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTATATTATTTATT
Found at i:93571527 original size:26 final size:26
Alignment explanation
Indices: 93571479--93571528 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
93571469 TATATCATTA
***
93571479 TATTAAATTATTTTTATCTTATTTAT
1 TATTAAATTATTTTTAAAATATTTAT
*
93571505 TATTATATTATTTTTAAAATATTT
1 TATTAAATTATTTTTAAAATATTT
93571529 TATATATCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (26 bp):
TATTAAATTATTTTTAAAATATTTAT
Found at i:93571761 original size:26 final size:26
Alignment explanation
Indices: 93571727--93571776 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
93571717 AAATTAACAA
*
93571727 ACCACACTTTTTC-AAAGTACTTCTCC
1 ACCACAC-TTTTCAAAAATACTTCTCC
*
93571753 ACCATACTTTTCAAAAATACTTCT
1 ACCACACTTTTCAAAAATACTTCT
93571777 TCTAAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.32, C:0.30, G:0.02, T:0.36
Consensus pattern (26 bp):
ACCACACTTTTCAAAAATACTTCTCC
Found at i:93573860 original size:3 final size:3
Alignment explanation
Indices: 93573801--93573849 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
93573791 TTTCATTACT
93573801 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
93573849 T
1 T
93573850 ATGTTTATTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:93573877 original size:21 final size:21
Alignment explanation
Indices: 93573834--93573895 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 21
93573824 ATTATTATTA
*
93573834 TTATTAT-TAT-TATTATATGT
1 TTATTATATATGTA-TATATCT
93573854 TTATTATATATGTATATATCT
1 TTATTATATATGTATATATCT
*
93573875 TTAATATATATATGTACATAT
1 TT-AT-TATATATGTATATAT
93573896 TTATGTAGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
20 7 0.19
21 11 0.31
22 4 0.11
23 14 0.39
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.56
Consensus pattern (21 bp):
TTATTATATATGTATATATCT
Found at i:93574022 original size:41 final size:40
Alignment explanation
Indices: 93573973--93574050 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
93573963 CTATGTTATG
*
93573973 AATATATATTTTTATATATGTTA-TATACATATATTTTTTT
1 AATATATATTTTT-TATATATTATTATACATATATTTTTTT
**
93574013 AATATTATATTTTTTATATATTATTATGTATATATTTT
1 AATA-TATATTTTTTATATATTATTATACATATATTTT
93574051 AATATCATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 12 0.36
41 21 0.64
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.62
Consensus pattern (40 bp):
AATATATATTTTTTATATATTATTATACATATATTTTTTT
Found at i:93574031 original size:14 final size:16
Alignment explanation
Indices: 93574002--93574036 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
93573992 GTTATATACA
93574002 TATATTTTTTTAATAT
1 TATATTTTTTTAATAT
93574018 TATA-TTTTTTATATAT
1 TATATTTTTTTA-ATAT
93574034 TAT
1 TAT
93574037 TATGTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TATATTTTTTTAATAT
Found at i:93574060 original size:22 final size:22
Alignment explanation
Indices: 93574018--93574131 Score: 81
Period size: 23 Copynumber: 5.0 Consensus size: 22
93574008 TTTTTAATAT
* *
93574018 TATATTTTTTATATATTATTATG
1 TATATATTTTA-ATATCATTATG
93574041 TATATATTTTAATATCATTA-G
1 TATATATTTTAATATCATTATG
*
93574062 TTATATATTTTTATACTAT-TTTATG
1 -TATATA-TTTTA-A-TATCATTATG
*
93574087 TATATATTTCTAATATTATATAT-
1 TATATATTT-TAATATCAT-TATG
* *
93574110 TAAATATTTCTAATACCATTAT
1 TATATATTT-TAATATCATTAT
93574132 TATTTATATA
Statistics
Matches: 76, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
21 1 0.01
22 20 0.26
23 36 0.47
24 15 0.20
25 4 0.05
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (22 bp):
TATATATTTTAATATCATTATG
Found at i:93574069 original size:47 final size:49
Alignment explanation
Indices: 93574018--93574142 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 49
93574008 TTTTTAATAT
93574018 TATATTTTTTATA-TATTATTATGTATATATTT-TAATATCAT-TAGTTA
1 TATATTTTTTATACTATTATTATGTATATATTTCTAATATCATATA-TTA
*
93574065 TATA-TTTTTATACTATT-TTATGTATATATTTCTAATATTATATATTA
1 TATATTTTTTATACTATTATTATGTATATATTTCTAATATCATATATTA
* * * * *
93574112 AATATTTCTAATACCATTATTATTTATATAT
1 TATATTTTTTATACTATTATTATGTATATAT
93574143 ATATATATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
46 22 0.33
47 22 0.33
48 12 0.18
49 11 0.16
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (49 bp):
TATATTTTTTATACTATTATTATGTATATATTTCTAATATCATATATTA
Found at i:93574238 original size:22 final size:22
Alignment explanation
Indices: 93574213--93574308 Score: 85
Period size: 22 Copynumber: 4.3 Consensus size: 22
93574203 ATTTCTAATG
*
93574213 TATATATA-TATCGTATATGTTT
1 TATATATATTAT-GTATATATTT
93574235 TATATATATTATGTATATATTT
1 TATATATATTATGTATATATTT
93574257 TA-ATATTATTA-GT-TATATTTT
1 TATATA-TATTATGTATATA-TTT
*
93574278 TTTATACTATTTCATGTATATATTT
1 TATATA-TA-TT-ATGTATATATTT
93574303 T-TATAT
1 TATATAT
93574309 TATCCTTATT
Statistics
Matches: 63, Mismatches: 3, Indels: 15
0.78 0.04 0.19
Matches are distributed among these distances:
20 4 0.06
21 9 0.14
22 29 0.46
23 6 0.10
24 5 0.08
25 6 0.10
26 4 0.06
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (22 bp):
TATATATATTATGTATATATTT
Found at i:93574481 original size:26 final size:25
Alignment explanation
Indices: 93574443--93574514 Score: 65
Period size: 26 Copynumber: 2.9 Consensus size: 25
93574433 TGTATATACT
*
93574443 ATGTAAATA-TTTTAATACTATATC
1 ATGTACATATTTTTAATACTATATC
** ** * *
93574467 ATGTATGTATTTTTTAACGCCATATT
1 ATGTACATA-TTTTTAATACTATATC
93574493 ATGTACATATTTTTAATACTAT
1 ATGTACATATTTTTAATACTAT
93574515 GTATATACTT
Statistics
Matches: 35, Mismatches: 11, Indels: 3
0.71 0.22 0.06
Matches are distributed among these distances:
24 7 0.20
25 10 0.29
26 18 0.51
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.49
Consensus pattern (25 bp):
ATGTACATATTTTTAATACTATATC
Found at i:93574517 original size:20 final size:21
Alignment explanation
Indices: 93574492--93574535 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
93574482 AACGCCATAT
*
93574492 TATGTACATA-TTTTTAATAC
1 TATGTACATACTTTGTAATAC
*
93574512 TATGTATATACTTTGTAATAC
1 TATGTACATACTTTGTAATAC
93574533 TAT
1 TAT
93574536 TATTATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TATGTACATACTTTGTAATAC
Found at i:93576618 original size:16 final size:18
Alignment explanation
Indices: 93576592--93576624 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
93576582 TAAAATTGGG
93576592 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
93576609 TTGA-AAAATTAATTTA
1 TTGAGAAAATTAATTTA
93576625 TCTAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:93576630 original size:21 final size:21
Alignment explanation
Indices: 93576601--93576644 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
93576591 GTTGAGAAAA
*
93576601 TTATTTAATTGAAA-AATTAAT
1 TTATCTAATT-AAACAATTAAT
93576622 TTATCTAATTAAATCAATTAAT
1 TTATCTAATTAAA-CAATTAAT
93576644 T
1 T
93576645 AAATAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 9 0.45
22 8 0.40
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (21 bp):
TTATCTAATTAAACAATTAAT
Found at i:93576850 original size:37 final size:37
Alignment explanation
Indices: 93576800--93576875 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
93576790 ATAAATATTA
93576800 TTTATATTTTACTAATTCAATCAAGATTCTTCTATCT
1 TTTATATTTTACTAATTCAATCAAGATTCTTCTATCT
93576837 TTTATATTTTACTAATTCAATCAAGATTCTTCTATCT
1 TTTATATTTTACTAATTCAATCAAGATTCTTCTATCT
93576874 TT
1 TT
93576876 CCCTATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.29, C:0.16, G:0.03, T:0.53
Consensus pattern (37 bp):
TTTATATTTTACTAATTCAATCAAGATTCTTCTATCT
Found at i:93581023 original size:21 final size:20
Alignment explanation
Indices: 93580999--93581037 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
93580989 TGCCGTTACC
93580999 TTTTTATTTCTTTCCTTTTAT
1 TTTTTATTTCTTT-CTTTTAT
93581020 TTTTTATTTCTTTCTTTT
1 TTTTTATTTCTTTCTTTT
93581038 CATGTTTGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTATTTCTTTCTTTTAT
Found at i:93588415 original size:38 final size:38
Alignment explanation
Indices: 93588364--93588440 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
93588354 AAAACTCAAC
93588364 TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
1 TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
*
93588402 TTTATCAGTTTTCACCCCCATTCTTAGTATTTTTATTG
1 TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
93588440 T
1 T
93588441 AAATTGAGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.08, T:0.53
Consensus pattern (38 bp):
TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
Found at i:93589062 original size:2 final size:2
Alignment explanation
Indices: 93589055--93589083 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
93589045 CTCTTTACCA
93589055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
93589084 GTTTTCATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:93611335 original size:47 final size:47
Alignment explanation
Indices: 93611225--93611336 Score: 129
Period size: 47 Copynumber: 2.4 Consensus size: 47
93611215 TTCGGGATAA
* * *
93611225 GCACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGT
1 GCACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGT
* * * *
93611272 ACACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-
1 GCACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGT
93611319 GCACATAGTG-TCTCATCG
1 GCACATAGTGCT-TCATCG
93611337 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (47 bp):
GCACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGT
Found at i:93612095 original size:4 final size:4
Alignment explanation
Indices: 93612082--93612116 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
93612072 TCAAATTTCC
93612082 CTTT -TTT CTTT CTTT CTTT CTTT C-TT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
93612117 ATGTTTTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 6 0.21
4 23 0.79
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:93612124 original size:19 final size:18
Alignment explanation
Indices: 93612083--93612125 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
93612073 CAAATTTCCC
*
93612083 TTTT-TTCTTTCTTTCTT
1 TTTTCTTCTTTCTTTCTG
93612100 TCTTTCTTCTTTCTTTCATG
1 T-TTTCTTCTTTCTTTC-TG
93612120 TTTTCT
1 TTTTCT
93612126 ATTTTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 3 0.14
19 16 0.73
20 2 0.09
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTTCTTCTTTCTTTCTG
Found at i:93614209 original size:19 final size:18
Alignment explanation
Indices: 93614180--93614259 Score: 72
Period size: 19 Copynumber: 4.3 Consensus size: 18
93614170 ACTTTAACTT
93614180 TTTTATATATATTTTTATAA
1 TTTT-TATATATTTTTA-AA
93614200 TTTTTATATATTTTTTAAA
1 TTTTTATATA-TTTTTAAA
** * *
93614219 -AATTATATAATTTGAAA
1 TTTTTATATATTTTTAAA
*
93614236 TTTTTATAAATATTTTAAA
1 TTTTTATATAT-TTTTAAA
93614255 TTTTT
1 TTTTT
93614260 GTTGAGAGAG
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
17 6 0.12
18 13 0.27
19 19 0.40
20 10 0.21
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (18 bp):
TTTTTATATATTTTTAAA
Found at i:93615482 original size:2 final size:2
Alignment explanation
Indices: 93615475--93615508 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
93615465 GCTCAATTAA
93615475 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93615509 TTAGAAGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93619776 original size:3 final size:3
Alignment explanation
Indices: 93619768--93619799 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
93619758 TAGGGTTGCC
93619768 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
93619800 ACGGTGAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34
Consensus pattern (3 bp):
TGG
Found at i:93623771 original size:99 final size:97
Alignment explanation
Indices: 93623593--93623772 Score: 213
Period size: 99 Copynumber: 1.8 Consensus size: 97
93623583 TTTTTAAAAA
* **
93623593 TTAAAACTTTATTTCTAAAATTAAAATATATTAGATATATTATTTCTAAAATGATTTATAACTTT
1 TTAAAACTTTATTTCTAAAATTAAAATATATTAGATATATTATTTATAAAATGATTTATAAAATT
***
93623658 TATTTTTAAAATTTAAAAAGATCAAAAAGAATAT
66 TAAAATT--AATTTAAAAAGATCAAAAAGAATAT
*
93623692 TTAAAACTTTATTTCTAAAATTTAAAAT-TATTAGATATATATTATTTATAAATTGAAGTTT-TA
1 TTAAAACTTTATTTCTAAAA-TTAAAATATATTAG--ATATATTATTTATAAAATG-A-TTTATA
93623755 AAATTTAAAATT-ATTTAA
61 AAATTTAAAATTAATTTAA
93623773 CAACTTATTC
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
99 32 0.46
100 7 0.10
101 17 0.25
102 10 0.14
103 3 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (97 bp):
TTAAAACTTTATTTCTAAAATTAAAATATATTAGATATATTATTTATAAAATGATTTATAAAATT
TAAAATTAATTTAAAAAGATCAAAAAGAATAT
Found at i:93628996 original size:80 final size:79
Alignment explanation
Indices: 93628882--93629040 Score: 230
Period size: 80 Copynumber: 2.0 Consensus size: 79
93628872 TCTACTCGTG
* * *
93628882 CCATCTATTTAGAGACAGAGAAGATAGAAACCTTATAGAGTTGTAGAGGCTTGTTTCAAATAATA
1 CCATCTATTTAGAGACAGAGAAGATAGAAACCTTATAAAGTTGTAGAGGCTTATTTCAAAT-AGA
*
93628947 AAAAAAACATTCTAC
65 AAAAAAACATCCTAC
* *
93628962 CCATCTATTTAGAGATAGAGAAGATA-AAACCCTTATAAAGTTGTAGAGGTTTATTTCAAATAGA
1 CCATCTATTTAGAGACAGAGAAGATAGAAA-CCTTATAAAGTTGTAGAGGCTTATTTCAAATAGA
*
93629026 AAAAGAACATCCTAC
65 AAAAAAACATCCTAC
93629041 ATAAAGTAGG
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
79 18 0.25
80 53 0.75
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.28
Consensus pattern (79 bp):
CCATCTATTTAGAGACAGAGAAGATAGAAACCTTATAAAGTTGTAGAGGCTTATTTCAAATAGAA
AAAAAACATCCTAC
Found at i:93641416 original size:167 final size:167
Alignment explanation
Indices: 93641086--93641419 Score: 580
Period size: 166 Copynumber: 2.0 Consensus size: 167
93641076 GAGAAATTTT
**
93641086 ATTTTTATTATCATAAAAATATATAATTTAATTCCCCCCTAAATCGTATTTCTGGATCTACCACA
1 ATTTTTATTATCATAAAAATATATAATTTAATTCCCCCCTAAATCGTATTTCTCAATCTACCACA
* * *
93641151 GAAAAAGGCCATTTCACTATTAACTTTAATGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
66 AAAAAAGACCATTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
93641216 ACTTCTTTTGGTGCGATAATTTTTATATTTTTTAATA
131 ACTTCTTTTGGTGCGATAATTTTTATATTTTTTAATA
*
93641253 ATTTTTATTATCATAAAAATATATAATTTAATT-CCCCCTAAATCGTATTTCTCAATCTGCCACA
1 ATTTTTATTATCATAAAAATATATAATTTAATTCCCCCCTAAATCGTATTTCTCAATCTACCACA
*
93641317 AAAAAAGACCCTTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
66 AAAAAAGACCATTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
* *
93641382 GCTTCTTTTGGTGCGATAATTTTTATATTTTTTTATA
131 ACTTCTTTTGGTGCGATAATTTTTATATTTTTTAATA
93641419 A
1 A
93641420 AATTTATATT
Statistics
Matches: 158, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
166 125 0.79
167 33 0.21
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.40
Consensus pattern (167 bp):
ATTTTTATTATCATAAAAATATATAATTTAATTCCCCCCTAAATCGTATTTCTCAATCTACCACA
AAAAAAGACCATTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
ACTTCTTTTGGTGCGATAATTTTTATATTTTTTAATA
Found at i:93641544 original size:10 final size:10
Alignment explanation
Indices: 93641531--93641582 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
93641521 TTTTATAAAA
*
93641531 TTTTACATTT
1 TTTTATATTT
*
93641541 TTTTATAATT
1 TTTTATATTT
93641551 TTTTATGATTT
1 TTTTAT-ATTT
*
93641562 TTATA-AGTTT
1 TTTTATA-TTT
93641572 TTTTATATTT
1 TTTTATATTT
93641582 T
1 T
93641583 AATATTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
9 1 0.03
10 25 0.74
11 8 0.24
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (10 bp):
TTTTATATTT
Found at i:93641550 original size:18 final size:19
Alignment explanation
Indices: 93641508--93641567 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
93641498 ATTTTATAAA
*
93641508 AAAAATTTACGATTTTTAT
1 AAAATTTTACGATTTTTAT
93641527 AAAATTTTAC-ATTTTTTTAT
1 AAAATTTTACGA--TTTTTAT
** *
93641547 AATTTTTTATGATTTTTAT
1 AAAATTTTACGATTTTTAT
93641566 AA
1 AA
93641568 GTTTTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 1 0.03
19 18 0.53
20 14 0.41
21 1 0.03
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (19 bp):
AAAATTTTACGATTTTTAT
Found at i:93641562 original size:20 final size:19
Alignment explanation
Indices: 93641520--93641594 Score: 57
Period size: 20 Copynumber: 3.9 Consensus size: 19
93641510 AAATTTACGA
** *
93641520 TTTTTATAAAATTTTACATT
1 TTTTTATAATTTTTTATA-T
93641540 TTTTTATAATTTTTTATGA-
1 TTTTTATAATTTTTTAT-AT
93641559 TTTTTATAAGTTTTTT-TAT
1 TTTTTATAA-TTTTTTATAT
*
93641578 ATTTTA-ATATTTTTTAT
1 TTTTTATA-ATTTTTTAT
93641595 TAAAATTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
18 8 0.17
19 17 0.37
20 20 0.43
21 1 0.02
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTATAATTTTTTATAT
Found at i:93641582 original size:19 final size:19
Alignment explanation
Indices: 93641540--93641594 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
93641530 ATTTTACATT
93641540 TTTTTATAATTTTTTATGA
1 TTTTTATAATTTTTTATGA
93641559 TTTTTATAAGTTTTTTTAT-A
1 TTTTTATAA--TTTTTTATGA
*
93641579 TTTTAAT-ATTTTTTAT
1 TTTTTATAATTTTTTAT
93641595 TAAAATTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 8 0.24
19 10 0.30
20 7 0.21
21 8 0.24
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (19 bp):
TTTTTATAATTTTTTATGA
Found at i:93641592 original size:39 final size:39
Alignment explanation
Indices: 93641513--93641593 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 39
93641503 ATAAAAAAAA
* *
93641513 TTTACGATTTTTATAAAATTTTACATTTTTTTATAATTT
1 TTTACGATTTTTATAAAATTTTACATATTTTAATAATTT
* ** **
93641552 TTTATGATTTTTATAAGTTTTTTTATATTTTAAT-ATTT
1 TTTACGATTTTTATAAAATTTTACATATTTTAATAATTT
93641590 TTTA
1 TTTA
93641594 TTAAAATTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
38 8 0.23
39 27 0.77
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (39 bp):
TTTACGATTTTTATAAAATTTTACATATTTTAATAATTT
Found at i:93650573 original size:30 final size:30
Alignment explanation
Indices: 93650491--93650582 Score: 114
Period size: 30 Copynumber: 3.1 Consensus size: 30
93650481 AACTATGTTG
* *
93650491 CTCACATAAGCAGAATTTATATCAAGGTTA
1 CTCACAAAAGCAGAATTTATATTAAGGTTA
*
93650521 CTCACAAAAGCAGAATTTATATTAAGGTTT
1 CTCACAAAAGCAGAATTTATATTAAGGTTA
* ** *
93650551 CTCACACAAGCTTAATTTATATT-AGATTA
1 CTCACAAAAGCAGAATTTATATTAAGGTTA
93650580 CTC
1 CTC
93650583 GTCTGGGCTA
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
29 7 0.13
30 47 0.87
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (30 bp):
CTCACAAAAGCAGAATTTATATTAAGGTTA
Found at i:93651143 original size:20 final size:20
Alignment explanation
Indices: 93651118--93651169 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
93651108 AATTGTTATT
93651118 CTAGAAAATAAAATTTATAC
1 CTAGAAAATAAAATTTATAC
93651138 CTAGAAAATAAAATTTATAC
1 CTAGAAAATAAAATTTATAC
*
93651158 TTAGAAAATAAA
1 CTAGAAAATAAA
93651170 TTCTTACTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.29
Consensus pattern (20 bp):
CTAGAAAATAAAATTTATAC
Found at i:93652769 original size:93 final size:93
Alignment explanation
Indices: 93652657--93652828 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
93652647 GCCCATAAGT
* *
93652657 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93652722 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
93652750 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
93652815 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
93652829 AACATCCTAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:93652824 original size:46 final size:46
Alignment explanation
Indices: 93652649--93652824 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
93652639 TGTAACCCGC
* *
93652649 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
93652695 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
93652741 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
93652788 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
93652825 TGCCAACATC
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:93656648 original size:17 final size:17
Alignment explanation
Indices: 93656626--93656661 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
93656616 TCACATATGT
93656626 ATCATAAACTTTTATTC
1 ATCATAAACTTTTATTC
93656643 ATCATAAACTTTTATTC
1 ATCATAAACTTTTATTC
93656660 AT
1 AT
93656662 ACTTTTCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.47
Consensus pattern (17 bp):
ATCATAAACTTTTATTC
Found at i:93658300 original size:93 final size:93
Alignment explanation
Indices: 93658188--93658359 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
93658178 GCCCATAAGT
* *
93658188 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93658253 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
93658281 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
93658346 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
93658360 AACATCCTAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:93658355 original size:46 final size:46
Alignment explanation
Indices: 93658180--93658355 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
93658170 TGTAACCCGC
* *
93658180 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
93658226 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
93658272 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
93658319 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
93658356 TGCCAACATC
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:93659660 original size:43 final size:43
Alignment explanation
Indices: 93659599--93659684 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
93659589 TTTTGTGGTC
93659599 ACGAAACCACTATTTCGACTAGGCCCAAAATCAGGATATTACA
1 ACGAAACCACTATTTCGACTAGGCCCAAAATCAGGATATTACA
93659642 ACGAAACCACTATTTCGACTAGGCCCAAAATCAGGATATTACA
1 ACGAAACCACTATTTCGACTAGGCCCAAAATCAGGATATTACA
93659685 TTTGTCGTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.26, G:0.14, T:0.21
Consensus pattern (43 bp):
ACGAAACCACTATTTCGACTAGGCCCAAAATCAGGATATTACA
Found at i:93672633 original size:20 final size:20
Alignment explanation
Indices: 93672610--93672648 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
93672600 CAATTTCACG
93672610 AATA-TTTTAAGAATTTAAAA
1 AATATTTTTAA-AATTTAAAA
93672630 AATATTTTTAAAATTTAAA
1 AATATTTTTAAAATTTAAA
93672649 TTTTAATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
AATATTTTTAAAATTTAAAA
Found at i:93680002 original size:16 final size:14
Alignment explanation
Indices: 93679938--93680002 Score: 51
Period size: 17 Copynumber: 4.2 Consensus size: 14
93679928 ATTTATCATG
93679938 AAATTAACTAAATTAT
1 AAATTAA-TAAA-TAT
*
93679954 ACAATAAATCAAATA-
1 A-AATTAAT-AAATAT
93679969 AAATTAATAAATATT
1 AAATTAATAAATA-T
93679984 AAATTATATAAAATAT
1 AAATTA-AT-AAATAT
93680000 AAA
1 AAA
93680003 CTAAATACGA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 5 0.12
14 6 0.15
15 7 0.17
16 10 0.24
17 13 0.32
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (14 bp):
AAATTAATAAATAT
Found at i:93681328 original size:17 final size:16
Alignment explanation
Indices: 93681302--93681335 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
93681292 ACATGTGGCA
93681302 AAAAATAATAAAAATT
1 AAAAATAATAAAAATT
93681318 AAAAATCAATAAAAATT
1 AAAAAT-AATAAAAATT
93681335 A
1 A
93681336 TAGAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAATAATAAAAATT
Found at i:93681481 original size:9 final size:9
Alignment explanation
Indices: 93681463--93681505 Score: 70
Period size: 9 Copynumber: 4.9 Consensus size: 9
93681453 ATTCTATATA
93681463 TTTTAT-AT
1 TTTTATAAT
93681471 TTTTATAAT
1 TTTTATAAT
93681480 TTTTATAAT
1 TTTTATAAT
93681489 TTTTATAAT
1 TTTTATAAT
*
93681498 TTTAATAA
1 TTTTATAA
93681506 AATTCAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 6 0.18
9 27 0.82
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:93681501 original size:17 final size:16
Alignment explanation
Indices: 93681457--93681501 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 16
93681447 TCTGTAATTC
93681457 TATATATTTTATATTTT
1 TATA-ATTTTATATTTT
93681474 TATAATTTTTATAATTTT
1 TATAA-TTTTAT-ATTTT
93681492 TATAATTTTA
1 TATAATTTTA
93681502 ATAAAATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.04
17 15 0.58
18 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATAATTTTATATTTT
Found at i:93681777 original size:44 final size:42
Alignment explanation
Indices: 93681714--93682041 Score: 360
Period size: 44 Copynumber: 8.0 Consensus size: 42
93681704 CTTTATTAAC
*
93681714 TTTTTTTGTTAGAGGAAAACCCCTCTATTTAAAAAATATATTA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTT-AAAAATATATTA
*
93681757 TTTCTTTTGTTAGAAAAAAACCCCTCTATTT-AAAA-ATATTA
1 TTT-TTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
* * *
93681798 TTTTTTT-TTAGAGAAAAGCCCTTTTATTTAAAAAAATATATTA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTT--AAAAATATATTA
* *
93681841 -TCTTTTGTTAGAGGAAAACCCCTCTATTTAAAAATA-A-TA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
93681880 TTTTTTTGTTAGAGAAAAA-CCCTCTATTTAAAAATA-A-TA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
* ** *
93681919 --TTATT-TTAGAGAAAAACCATTCTATTT-AAAAGATATTA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
* *
93681957 -TTTTTTGTTAGAGAAAAGCCCCTCTATTTCAAAATATATTTTA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTT-AAAA-ATATATTA
*
93682000 TTTTTTTATTAGAGAAAAACCCCTCTATTTTAAAAAATATAT
1 TTTTTTTGTTAGAGAAAAACCCCTCTA-TTT-AAAAATATAT
93682042 ATTATTATGA
Statistics
Matches: 241, Mismatches: 27, Indels: 33
0.80 0.09 0.11
Matches are distributed among these distances:
36 16 0.07
37 13 0.05
38 2 0.01
39 44 0.18
40 40 0.17
41 16 0.07
42 16 0.07
43 33 0.14
44 54 0.22
45 7 0.03
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.42
Consensus pattern (42 bp):
TTTTTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
Found at i:93685011 original size:16 final size:15
Alignment explanation
Indices: 93684973--93685014 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
93684963 TATGCTTCTT
*
93684973 TATAAAAATAA-TAT
1 TATAAAAATAATTAC
*
93684987 TAAAAAAATAATTAAC
1 TATAAAAATAATT-AC
93685003 TATAAAAATAAT
1 TATAAAAATAAT
93685015 GAGAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 10 0.43
15 1 0.04
16 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
TATAAAAATAATTAC
Found at i:93685022 original size:30 final size:30
Alignment explanation
Indices: 93684973--93685030 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
93684963 TATGCTTCTT
*
93684973 TATAAAAATAATATTAAAAAAATAATTAAC
1 TATAAAAATAATATGAAAAAAATAATTAAC
*
93685003 TATAAAAATAATGA-GAAAAAATTAATTA
1 TATAAAAATAAT-ATGAAAAAAATAATTA
93685031 TGAAAACGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (30 bp):
TATAAAAATAATATGAAAAAAATAATTAAC
Found at i:93688738 original size:14 final size:14
Alignment explanation
Indices: 93688719--93688745 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
93688709 TTAATTACGG
93688719 AAAGATATTCTCGA
1 AAAGATATTCTCGA
93688733 AAAGATATTCTCG
1 AAAGATATTCTCG
93688746 TAACTTCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (14 bp):
AAAGATATTCTCGA
Found at i:93691705 original size:46 final size:46
Alignment explanation
Indices: 93691524--93691705 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
93691514 TTTGACATGA
* * * * * *
93691524 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
93691570 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
93691616 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
93691662 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
93691706 AGAGCACACT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 120 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:93695165 original size:64 final size:64
Alignment explanation
Indices: 93695092--93695302 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
93695082 CTGGGCCAGA
*
93695092 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
93695156 GCCCATTTCAAAATAC-ATGCAACATTAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-ACT-G-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
93695218 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
93695229 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
93695293 GCCCATTTCA
1 GCCCATTTCA
93695303 AAATACATAC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 2 0.02
67 10 0.10
68 5 0.05
69 5 0.05
70 10 0.10
71 2 0.02
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:93695304 original size:137 final size:137
Alignment explanation
Indices: 93695058--93695342 Score: 534
Period size: 137 Copynumber: 2.1 Consensus size: 137
93695048 TATTGGGCCT
**
93695058 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
93695123 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATTAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
93695188 CATATGC
131 CATATGC
93695195 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
93695260 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
93695325 CATATGC
131 CATATGC
93695332 AAGCCCATTTG
1 AAGCCCATTTG
93695343 AGGAGACTAC
Statistics
Matches: 144, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
CATATGC
Found at i:93697169 original size:26 final size:26
Alignment explanation
Indices: 93697133--93697268 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
93697123 CATGATATTC
93697133 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
93697159 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
93697185 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
93697211 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
93697237 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
93697263 TTATCA
1 TTATCA
93697269 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:93698082 original size:27 final size:28
Alignment explanation
Indices: 93698052--93698120 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 28
93698042 TAATGTTACC
93698052 TATATACATACGTATATA-TATTTA-AAA-
1 TATATACATA-GTATATAGTA-TTACAAAG
* *
93698079 TATAAACATAATA-ATAGTATTACAAAG
1 TATATACATAGTATATAGTATTACAAAG
93698106 TATATACATAGTATA
1 TATATACATAGTATA
93698121 AAAAATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
25 6 0.18
26 7 0.21
27 20 0.59
28 1 0.03
ACGTcount: A:0.51, C:0.07, G:0.06, T:0.36
Consensus pattern (28 bp):
TATATACATAGTATATAGTATTACAAAG
Found at i:93698131 original size:20 final size:21
Alignment explanation
Indices: 93698092--93698137 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
93698082 AAACATAATA
* *
93698092 ATAGTATTACAAAGTATATAC
1 ATAGTATTAAAAAATATATAC
93698113 ATAGTA-TAAAAAATATATAC
1 ATAGTATTAAAAAATATATAC
93698133 ATAGT
1 ATAGT
93698138 GTAATGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (21 bp):
ATAGTATTAAAAAATATATAC
Found at i:93698321 original size:24 final size:23
Alignment explanation
Indices: 93698285--93698350 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 23
93698275 AAAAAGGTAT
*
93698285 ATATATACGTAATATATA-AAAA
1 ATATATACATAATATATATAAAA
*
93698307 ATGCATATACATAATATAATATTAAA
1 AT--ATATACATAATAT-ATATAAAA
*
93698333 ATATCTACATAATATATA
1 ATATATACATAATATATA
93698351 CATATTAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.05
23 3 0.08
24 24 0.65
25 3 0.08
26 5 0.14
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.35
Consensus pattern (23 bp):
ATATATACATAATATATATAAAA
Found at i:93698352 original size:11 final size:11
Alignment explanation
Indices: 93698285--93698354 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
93698275 AAAAAGGTAT
*
93698285 ATATATACGTA
1 ATATATACATA
* *
93698296 ATATATAAAAA
1 ATATATACATA
93698307 ATGCATATACATA
1 AT--ATATACATA
* *
93698320 ATATAATATTAAA
1 ATAT-ATA-CATA
*
93698333 ATATCTACATA
1 ATATATACATA
93698344 ATATATACATA
1 ATATATACATA
93698355 TTAGAAATAA
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
11 24 0.55
12 5 0.11
13 15 0.34
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (11 bp):
ATATATACATA
Found at i:93698769 original size:12 final size:13
Alignment explanation
Indices: 93698723--93698784 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 13
93698713 TATTAGTACC
* *
93698723 GATAATAATAACA
1 GATATTAATAATA
*
93698736 GAATATTGATAATA
1 G-ATATTAATAATA
93698750 GATA-TAATAAT-
1 GATATTAATAATA
93698761 GATATTAATAA-A
1 GATATTAATAATA
*
93698773 -ATATAAATAATA
1 GATATTAATAATA
93698785 TTAAAATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
11 13 0.32
12 13 0.32
13 4 0.10
14 10 0.25
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (13 bp):
GATATTAATAATA
Found at i:93698787 original size:20 final size:20
Alignment explanation
Indices: 93698762--93698802 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
93698752 TATAATAATG
93698762 ATATT-AATAAAATATAAATA
1 ATATTAAATAAAATA-AAATA
93698782 ATATTAAAATAAAATAAAATA
1 ATATT-AAATAAAATAAAATA
93698803 CGCAAAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 5 0.26
22 9 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
ATATTAAATAAAATAAAATA
Found at i:93700798 original size:24 final size:22
Alignment explanation
Indices: 93700744--93700803 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 22
93700734 AAAAATGTAT
* *
93700744 AAAATTATTAAATATTAAAATA
1 AAAATTATAAAATATTAAAAGA
* *
93700766 AAAAATATAAATATATTTTAAAGA
1 AAAATTATAAA-ATA-TTAAAAGA
93700790 AAAATTATAAAATA
1 AAAATTATAAAATA
93700804 ATACGGGCGG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 9 0.29
23 6 0.19
24 16 0.52
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATTATAAAATATTAAAAGA
Found at i:93707283 original size:10 final size:11
Alignment explanation
Indices: 93707258--93707283 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
93707248 TATTTATATG
93707258 TTTTTTAGAAA
1 TTTTTTAGAAA
93707269 TTTTTTAGAAA
1 TTTTTTAGAAA
93707280 TTTT
1 TTTT
93707284 ATAATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (11 bp):
TTTTTTAGAAA
Found at i:93707322 original size:18 final size:19
Alignment explanation
Indices: 93707301--93707337 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
93707291 TTCTTAAAAA
93707301 TATAAA-TTTTGAAATTTT
1 TATAAAGTTTTGAAATTTT
93707319 TATAAATGTTTTGAAATTT
1 TATAAA-GTTTTGAAATTT
93707338 AAATGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TATAAAGTTTTGAAATTTT
Found at i:93711601 original size:33 final size:33
Alignment explanation
Indices: 93711559--93711625 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
93711549 ATGTTGCAGA
93711559 TCCTTAGGCACTAATGACTGAAGTAAAACATAG
1 TCCTTAGGCACTAATGACTGAAGTAAAACATAG
93711592 TCCTTAGGCACTAATGACTGAAGTAAAACATAG
1 TCCTTAGGCACTAATGACTGAAGTAAAACATAG
93711625 T
1 T
93711626 AGAACACATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (33 bp):
TCCTTAGGCACTAATGACTGAAGTAAAACATAG
Found at i:93715853 original size:10 final size:10
Alignment explanation
Indices: 93715838--93715866 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
93715828 AATCCGTTCC
93715838 TTTATTTTTT
1 TTTATTTTTT
93715848 TTTA-TTTTT
1 TTTATTTTTT
93715857 TTTATTTTTT
1 TTTATTTTTT
93715867 GCACTTGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:93722380 original size:7 final size:7
Alignment explanation
Indices: 93722370--93722398 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
93722360 AAACTGGATT
93722370 GATTAAA
1 GATTAAA
93722377 GATTAAA
1 GATTAAA
93722384 GATTAAA
1 GATTAAA
93722391 GATTAAA
1 GATTAAA
93722398 G
1 G
93722399 CAACTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (7 bp):
GATTAAA
Found at i:93724958 original size:17 final size:17
Alignment explanation
Indices: 93724936--93724981 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
93724926 TAATAAATAA
93724936 AAATATATAAA-ATTAAT
1 AAATAT-TAAATATTAAT
93724953 AAATATTAAATATTAA-
1 AAATATTAAATATTAAT
93724969 ATAATA-TAAATAT
1 A-AATATTAAATAT
93724982 ATGTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATATTAAATATTAAT
Found at i:93724971 original size:14 final size:16
Alignment explanation
Indices: 93724936--93724981 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
93724926 TAATAAATAA
93724936 AAAT-ATATAAA-ATT
1 AAATAATATAAATATT
93724950 -AATAAATATTAAATATT
1 AAAT-AATA-TAAATATT
93724967 AAATAATATAAATAT
1 AAATAATATAAATAT
93724982 ATGTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
13 3 0.11
15 3 0.11
16 11 0.41
17 7 0.26
18 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATAATATAAATATT
Found at i:93725646 original size:16 final size:18
Alignment explanation
Indices: 93725607--93725640 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
93725597 TAGGTTTATA
93725607 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
93725624 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
93725641 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:93727067 original size:19 final size:20
Alignment explanation
Indices: 93727024--93727060 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93727014 TTTATTTTAT
93727024 TTATTTTAATATCAATATAA
1 TTATTTTAATATCAATATAA
*
93727044 TTATTTTTAT-TCAATAT
1 TTATTTTAATATCAATAT
93727061 TAATATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATTTTAATATCAATATAA
Found at i:93729000 original size:15 final size:16
Alignment explanation
Indices: 93728980--93729016 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
93728970 TAATATTTTA
93728980 AAAATTA-TAAAAATT
1 AAAATTATTAAAAATT
93728995 AAAATTATTAAAAATT
1 AAAATTATTAAAAATT
93729011 AAAATT
1 AAAATT
93729017 TAATTTTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATTATTAAAAATT
Found at i:93749474 original size:32 final size:32
Alignment explanation
Indices: 93749438--93749501 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
93749428 ACTTTTTCTC
93749438 TTGTTTTTCCACATGTAAATTTTTAATTGGTT
1 TTGTTTTTCCACATGTAAATTTTTAATTGGTT
*
93749470 TTGTTTTTCCACATGTAAGTTTTTAATTGGTT
1 TTGTTTTTCCACATGTAAATTTTTAATTGGTT
93749502 AATATTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.20, C:0.09, G:0.14, T:0.56
Consensus pattern (32 bp):
TTGTTTTTCCACATGTAAATTTTTAATTGGTT
Done.