Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 317 of 328
Found at i:94036790 original size:18 final size:19
Alignment explanation
Indices: 94036753--94036790 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
94036743 ACGTTCGTAA
**
94036753 TTTATTATATTATGTTATT
1 TTTATTATATTATGCAATT
94036772 TTTA-TATATTATGCAATT
1 TTTATTATATTATGCAATT
94036790 T
1 T
94036791 ATAACATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTATTATATTATGCAATT
Found at i:94038981 original size:9 final size:9
Alignment explanation
Indices: 94038967--94038995 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
94038957 TTACTAATTT
94038967 AAAATTTTA
1 AAAATTTTA
94038976 AAAATTTTA
1 AAAATTTTA
94038985 AAAATTTTA
1 AAAATTTTA
94038994 AA
1 AA
94038996 TGGCTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AAAATTTTA
Found at i:94039102 original size:31 final size:30
Alignment explanation
Indices: 94039064--94039153 Score: 126
Period size: 31 Copynumber: 2.9 Consensus size: 30
94039054 GATACCCCCG
*
94039064 TATATATATAATTGAATCAAAATCAAAATT
1 TATATATATAATTGAATCAAAATAAAAATT
*
94039094 CTATATATATATTTGAATCAAAATAAAAATT
1 -TATATATATAATTGAATCAAAATAAAAATT
*
94039125 TAATAAATATAATTGAATCAAAACTAAAA
1 T-ATATATATAATTGAATCAAAA-TAAAA
94039154 TACATTTATC
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
30 1 0.02
31 47 0.89
32 5 0.09
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (30 bp):
TATATATATAATTGAATCAAAATAAAAATT
Found at i:94040805 original size:11 final size:11
Alignment explanation
Indices: 94040789--94040826 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
94040779 CTTAGAAAGC
94040789 AAATAATAATA
1 AAATAATAATA
*
94040800 AAATAATAACA
1 AAATAATAATA
94040811 AATATAATAATA
1 AA-ATAATAATA
94040823 AAAT
1 AAAT
94040827 GGTAGCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (11 bp):
AAATAATAATA
Found at i:94044327 original size:12 final size:13
Alignment explanation
Indices: 94044304--94044328 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94044294 GAAATTTTTA
94044304 ACTTTTTAAAAAT
1 ACTTTTTAAAAAT
94044317 ACTTTTTAAAAA
1 ACTTTTTAAAAA
94044329 CATTGCTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
ACTTTTTAAAAAT
Found at i:94048130 original size:5 final size:5
Alignment explanation
Indices: 94048110--94048182 Score: 69
Period size: 5 Copynumber: 14.8 Consensus size: 5
94048100 GTAGTGGATG
* * * *
94048110 ATGAT AGGAC ATGAT ATGAT ATGAT ATGTT TTGAT -TCGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT AT-GAT ATGAT ATGAT
* *
94048160 ACGA- ATGAT ATGAT AAGAT ATGA
1 ATGAT ATGAT ATGAT ATGAT ATGA
94048183 GCTAGCTTGA
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
4 4 0.07
5 49 0.91
6 1 0.02
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (5 bp):
ATGAT
Found at i:94048130 original size:15 final size:15
Alignment explanation
Indices: 94048110--94048182 Score: 76
Period size: 15 Copynumber: 4.9 Consensus size: 15
94048100 GTAGTGGATG
* *
94048110 ATGATAGGACATGAT
1 ATGATACGATATGAT
* *
94048125 ATGATATGATATGTT
1 ATGATACGATATGAT
* *
94048140 TTGATTCGATATGAT
1 ATGATACGATATGAT
94048155 ATGATACGA-ATGAT
1 ATGATACGATATGAT
*
94048169 ATGATAAGATATGA
1 ATGATACGATATGA
94048183 GCTAGCTTGA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
14 13 0.28
15 34 0.72
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (15 bp):
ATGATACGATATGAT
Found at i:94048439 original size:15 final size:15
Alignment explanation
Indices: 94048398--94048440 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
94048388 GTTTCACACT
* *
94048398 TTTTTGGATTTTGTA
1 TTTTTGGACTTTATA
*
94048413 TGTTTCGGACTTTATA
1 T-TTTTGGACTTTATA
94048429 TTTTTGGACTTT
1 TTTTTGGACTTT
94048441 TAAGGAACTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.14, C:0.07, G:0.19, T:0.60
Consensus pattern (15 bp):
TTTTTGGACTTTATA
Found at i:94051553 original size:26 final size:27
Alignment explanation
Indices: 94051520--94051575 Score: 96
Period size: 26 Copynumber: 2.1 Consensus size: 27
94051510 TAAAAAAATT
94051520 AATAAATTTAACCTTTAATATTTA-AA
1 AATAAATTTAACCTTTAATATTTACAA
*
94051546 AATAAATTTAACTTTTAATATTTACAA
1 AATAAATTTAACCTTTAATATTTACAA
94051573 AAT
1 AAT
94051576 CTGCTAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (27 bp):
AATAAATTTAACCTTTAATATTTACAA
Found at i:94054722 original size:20 final size:20
Alignment explanation
Indices: 94054697--94054745 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 20
94054687 AGAAGGCTCC
94054697 TGAAGAATTCTAATCCATTG
1 TGAAGAATTCTAATCCATTG
94054717 TGAAGATAAATTCTAATCCATTG
1 TGAAG---AATTCTAATCCATTG
94054740 TGAAGA
1 TGAAGA
94054746 TAATACTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 6 0.23
23 20 0.77
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (20 bp):
TGAAGAATTCTAATCCATTG
Found at i:94054730 original size:23 final size:23
Alignment explanation
Indices: 94054702--94054748 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
94054692 GCTCCTGAAG
94054702 AATTCTAATCCATTGTGAAGATA
1 AATTCTAATCCATTGTGAAGATA
94054725 AATTCTAATCCATTGTGAAGATA
1 AATTCTAATCCATTGTGAAGATA
94054748 A
1 A
94054749 TACTACTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (23 bp):
AATTCTAATCCATTGTGAAGATA
Found at i:94059572 original size:14 final size:14
Alignment explanation
Indices: 94059553--94059579 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
94059543 AAAAACTGAT
94059553 TTGTCATTCTCATG
1 TTGTCATTCTCATG
94059567 TTGTCATTCTCAT
1 TTGTCATTCTCAT
94059580 AATTTGGTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.22, G:0.11, T:0.52
Consensus pattern (14 bp):
TTGTCATTCTCATG
Found at i:94066094 original size:26 final size:25
Alignment explanation
Indices: 94066058--94066146 Score: 67
Period size: 25 Copynumber: 3.6 Consensus size: 25
94066048 TAAAAACATA
94066058 AAAATCATAAAAAAAATAATTTTTAT
1 AAAATCAT-AAAAAAATAATTTTTAT
* * * * *
94066084 AAAATTATAAACAATTGAA-TTTCAA
1 AAAATCATAAAAAAAT-AATTTTTAT
* *
94066109 AAAAACATAAAAATATAATTTTT-T
1 AAAATCATAAAAAAATAATTTTTAT
*
94066133 -AAATTATAAAAAAA
1 AAAATCATAAAAAAA
94066147 ATTAGAATTT
Statistics
Matches: 46, Mismatches: 15, Indels: 7
0.68 0.22 0.10
Matches are distributed among these distances:
23 11 0.24
24 2 0.04
25 24 0.52
26 9 0.20
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (25 bp):
AAAATCATAAAAAAATAATTTTTAT
Found at i:94066118 original size:51 final size:50
Alignment explanation
Indices: 94066057--94066182 Score: 132
Period size: 50 Copynumber: 2.5 Consensus size: 50
94066047 TTAAAAACAT
* *
94066057 AAAAATCATAAAAAAAATAATTTTTATAAAATTAT-AAACAATT-GAATTTCA
1 AAAAAACATAAAAAAAATAATTTTT-T-AAATTATAAAAAAATTAGAATTT-A
*
94066108 AAAAAACAT-AAAAATATAATTTTTTAAATTATAAAAAAAATTAGAATTTA
1 AAAAAACATAAAAAAAATAATTTTTTAAATTAT-AAAAAAATTAGAATTTA
* *
94066158 AAAAATATATAAAAATAAAAAATTT
1 AAAAA-ACATAAAAA-AAATAATTT
94066183 AAAATTTACA
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
48 7 0.11
49 1 0.02
50 27 0.43
51 17 0.27
52 4 0.06
53 7 0.11
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.33
Consensus pattern (50 bp):
AAAAAACATAAAAAAAATAATTTTTTAAATTATAAAAAAATTAGAATTTA
Found at i:94066176 original size:17 final size:18
Alignment explanation
Indices: 94066132--94066202 Score: 60
Period size: 17 Copynumber: 4.1 Consensus size: 18
94066122 TATAATTTTT
* *
94066132 TAAATTATAAAAAAAAT-
1 TAAAATATAAAAAATATA
* *
94066149 TAGAATTTAAAAAATATA
1 TAAAATATAAAAAATATA
94066167 TAAAA-ATAAAAAAT-T-
1 TAAAATATAAAAAATATA
*
94066182 TAAAATTTACAAAAATATA
1 TAAAATATA-AAAAATATA
94066201 TA
1 TA
94066203 TTAAAATTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
15 5 0.12
16 3 0.07
17 27 0.64
18 5 0.12
19 2 0.05
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (18 bp):
TAAAATATAAAAAATATA
Found at i:94066188 original size:51 final size:49
Alignment explanation
Indices: 94066083--94066197 Score: 119
Period size: 51 Copynumber: 2.3 Consensus size: 49
94066073 ATAATTTTTA
* * **
94066083 TAAAATTAT-AAACAATTGAATTTCAAAAAAACATAAAAATATAATTTT
1 TAAAATTATAAAAAAATTGAATTTCAAAAAAACATAAAAATAAAAAATT
* *
94066131 TTAAATTATAAAAAAAATTAGAATTT-AAAAAATATATAAAAATAAAAAATT
1 TAAAATTAT-AAAAAAATT-GAATTTCAAAAAA-ACATAAAAATAAAAAATT
*
94066182 TAAAATT-TACAAAAAT
1 TAAAATTATAAAAAAAT
94066198 ATATATTAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
48 8 0.15
49 7 0.13
50 14 0.25
51 26 0.47
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (49 bp):
TAAAATTATAAAAAAATTGAATTTCAAAAAAACATAAAAATAAAAAATT
Found at i:94066200 original size:32 final size:32
Alignment explanation
Indices: 94066141--94066239 Score: 89
Period size: 33 Copynumber: 3.2 Consensus size: 32
94066131 TTAAATTATA
* * *
94066141 AAAAAAATTAGAATTTAAAAAATATATAAAAAT
1 AAAAAATTTAAAATTTACAAAA-ATATAAAAAT
*
94066174 AAAAAATTTAAAATTTACAAAAATAT--ATAT
1 AAAAAATTTAAAATTTACAAAAATATAAAAAT
* * *
94066204 -TAAAATTATTAAATTTTCAAAAA-ATAAAAAT
1 AAAAAATT-TAAAATTTACAAAAATATAAAAAT
94066235 AAAAA
1 AAAAA
94066240 TTATATAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
29 8 0.15
30 16 0.30
31 3 0.06
32 7 0.13
33 19 0.36
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (32 bp):
AAAAAATTTAAAATTTACAAAAATATAAAAAT
Found at i:94066216 original size:31 final size:32
Alignment explanation
Indices: 94066138--94066251 Score: 99
Period size: 31 Copynumber: 3.6 Consensus size: 32
94066128 TTTTTAAATT
** * *
94066138 ATAAAAAAAATTAGAATTTAAAAAATATATAAAA
1 ATAAAAATTATTAAAATTTACAAAA-A-ATAAAA
* * *
94066172 ATAAAAAAT-TTAAAATTTAC-AAAAATATAT
1 ATAAAAATTATTAAAATTTACAAAAAATAAAA
* *
94066202 ATTAAAATTATT-AAATTTTCAAAAAATAAAA
1 ATAAAAATTATTAAAATTTACAAAAAATAAAA
94066233 ATAAAAATTATATAAAATT
1 ATAAAAATTAT-TAAAATT
94066252 ATCGAAAAGA
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
30 18 0.28
31 21 0.32
32 4 0.06
33 14 0.22
34 8 0.12
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (32 bp):
ATAAAAATTATTAAAATTTACAAAAAATAAAA
Found at i:94068091 original size:29 final size:29
Alignment explanation
Indices: 94068059--94068115 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
94068049 AGTAGCGTCC
* *
94068059 CCTACTTTTTAGATTTTACAGTTTTGTCT
1 CCTACTTTATAAATTTTACAGTTTTGTCT
*
94068088 CCTACTTTATAAATTTTATAGTTTTGTC
1 CCTACTTTATAAATTTTACAGTTTTGTC
94068116 CAAATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.16, G:0.09, T:0.54
Consensus pattern (29 bp):
CCTACTTTATAAATTTTACAGTTTTGTCT
Found at i:94078976 original size:18 final size:17
Alignment explanation
Indices: 94078953--94078990 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
94078943 ACATAATTCT
94078953 AATTTA-TTAATATATCAA
1 AATTTATTTAA-ATAT-AA
94078971 AATTTATTTAAATATAA
1 AATTTATTTAAATATAA
94078988 AAT
1 AAT
94078991 AGTTTAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 10 0.53
19 4 0.21
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTTATTTAAATATAA
Found at i:94079609 original size:20 final size:21
Alignment explanation
Indices: 94079559--94079612 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
94079549 AAAATTATAA
*
94079559 TTTTAA-AATTTGTATAACTT
1 TTTTAATAATTTTTATAACTT
* *
94079579 TTTTTAT-ATTTTTATGA-TT
1 TTTTAATAATTTTTATAACTT
94079598 TTTTAATAATTTTTA
1 TTTTAATAATTTTTA
94079613 AATTTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 8 0.29
20 20 0.71
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (21 bp):
TTTTAATAATTTTTATAACTT
Found at i:94094272 original size:32 final size:32
Alignment explanation
Indices: 94094236--94094300 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
94094226 TTATAGGATG
94094236 AATAAAATATGAGATTAAATCTTATTGAGTCT
1 AATAAAATATGAGATTAAATCTTATTGAGTCT
94094268 AATAAAATATGAGATTAAATCTTATTGAGTCT
1 AATAAAATATGAGATTAAATCTTATTGAGTCT
94094300 A
1 A
94094301 GTTTCTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (32 bp):
AATAAAATATGAGATTAAATCTTATTGAGTCT
Found at i:94095899 original size:46 final size:46
Alignment explanation
Indices: 94095847--94096124 Score: 351
Period size: 46 Copynumber: 6.0 Consensus size: 46
94095837 GTGTGCTCTC
** *
94095847 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
** * *
94095893 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* *
94095939 TGATATAAAATGAATAAGACCATGGTTGAAAGAGACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*** * *
94095985 TGACGGGAAATGAATAAGACCATGGTTGAAAGATAACATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
94096031 TGATATGAAATGAATAAGACCATGGTTGAAAGATATCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * *
94096077 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
94096123 TG
1 TG
94096125 TCAAAGATAA
Statistics
Matches: 204, Mismatches: 27, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
45 1 0.00
46 203 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:94096004 original size:92 final size:92
Alignment explanation
Indices: 94095847--94096109 Score: 391
Period size: 92 Copynumber: 2.9 Consensus size: 92
94095837 GTGTGCTCTC
** * * * *
94095847 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
*
94095912 CCATGGTTGAAAGATACCATGACAACG
66 CCATGGTTGAAAGATAACATGACAACG
* * * *
94095939 TGATATAAAATGAATAAGACCATGGTTGAAAGAGACCATGGCAACATGACGGGAAATGAATAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
*
94096004 CCATGGTTGAAAGATAACATGGCAACG
66 CCATGGTTGAAAGATAACATGACAACG
* *
94096031 TGATATGAAATGAATAAGACCATGGTTGAAAGATATCATGGCAACATGACAGAAAATGAGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
*
94096096 CCATAGTTGAAAGA
66 CCATGGTTGAAAGA
94096110 CACTATGGCA
Statistics
Matches: 152, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 152 1.00
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (92 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGTAAGA
CCATGGTTGAAAGATAACATGACAACG
Found at i:94096105 original size:138 final size:138
Alignment explanation
Indices: 94095861--94096124 Score: 402
Period size: 138 Copynumber: 1.9 Consensus size: 138
94095851 ATGAAATGTG
* **
94095861 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATAACATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
* * * * *
94095926 TACCATGACAACGTGATATAAAATGAATAAGACCATGGTTGAAAGAGACCATGGCAACATGACGG
66 TACCATGACAACATGACAGAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACGG
94095991 GAAATGAA
131 GAAATGAA
*
94095999 TAAGACCATGGTTGAAAGATAACATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATAACATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
* * * * *
94096064 TATCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
66 TACCATGACAACATGACAGAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATG
94096125 TCAAAGATAA
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 112 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATAACATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGACAACATGACAGAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACGG
GAAATGAA
Found at i:94096426 original size:16 final size:17
Alignment explanation
Indices: 94096405--94096437 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94096395 ATGATGGAGC
94096405 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
94096421 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
94096438 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:94099879 original size:19 final size:20
Alignment explanation
Indices: 94099852--94099893 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
94099842 CAAATACCAG
*
94099852 AAAAGTAAATTA-TTTTTAA
1 AAAAATAAATTATTTTTTAA
94099871 AAAAATAAATTATTTTTTAA
1 AAAAATAAATTATTTTTTAA
94099891 AAA
1 AAA
94099894 TTATTTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
AAAAATAAATTATTTTTTAA
Found at i:94099896 original size:14 final size:14
Alignment explanation
Indices: 94099877--94099913 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
94099867 TTAAAAAAAT
*
94099877 AAATTATTTTTTAA
1 AAATTATTTTTCAA
94099891 AAATTATTTTTCAA
1 AAATTATTTTTCAA
94099905 AAA-TATTTT
1 AAATTATTTT
94099914 AGTGGCAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (14 bp):
AAATTATTTTTCAA
Found at i:94102695 original size:21 final size:20
Alignment explanation
Indices: 94102652--94102696 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
94102642 AGAAATAAGG
***
94102652 TTGTTGTTCTTCTCTTTTTC
1 TTGTTGTTCTTCTCTTAAAC
94102672 TTGTTGTTTCTTCTCTTAAAC
1 TTGTTG-TTCTTCTCTTAAAC
94102693 TTGT
1 TTGT
94102697 AGAAGAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.07, C:0.18, G:0.11, T:0.64
Consensus pattern (20 bp):
TTGTTGTTCTTCTCTTAAAC
Found at i:94103287 original size:4 final size:4
Alignment explanation
Indices: 94103278--94103306 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
94103268 AGCAAACGTG
94103278 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
94103307 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:94104134 original size:47 final size:47
Alignment explanation
Indices: 94104070--94104180 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
94104060 GACATTGAGT
* *
94104070 CGATG-AGACACTATGTGT-CAACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACAA-TAATGTTAAAGTTCCGGATTTATTC
* * *
94104117 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACAATAATGTTAAAGTTCCGGATTTATTC
94104164 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
94104181 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACAATAATGTTAAAGTTCCGGATTTATTC
Found at i:94108021 original size:202 final size:202
Alignment explanation
Indices: 94107669--94108239 Score: 727
Period size: 202 Copynumber: 2.8 Consensus size: 202
94107659 CATGTGGCTA
* * *
94107669 GGACCCAT-AATAAGATATGATTGTATGAATATTCATGGTGATAGCTTCGGTAATATGTAAACCA
1 GGACCCATGAA-AAGATATGATTGTATGAATATTCATGGTGATGGCTTCGATAATATGTAAACCG
* * * * *
94107733 GACTAGTAGATCATGGCATGAAAATATGTATAAGTCCATAAGGGAGATAACCATAGCACCTTTTG
65 GACTAGCAGATCACGACATGAAAATATGTATAAGTCCATGAGGGAGATACCCATAGCACCTTTTG
* * * * * * **
94107798 TGAAAGTTCATTGGAACAGTAAACATGTGATTTTGTATAATGGCCTGTGTGTCGTAATCTACTAA
130 TGAAAGTTCATAGGAACAGTAAACACGTGATTTTGTATAATGACATGTGTGGCATAATCTAAAAA
* *
94107863 GCTTTTTG
195 GCCTTCTG
* * * *
94107871 GGACCCATGACAAGATATGACTATATGAATATTTATGGTGATGGCTTCGATAATATGTAAACCGG
1 GGACCCATGAAAAGATATGATTGTATGAATATTCATGGTGATGGCTTCGATAATATGTAAACCGG
* *
94107936 ACTAGCAAATCACGATATGAAAATATGTATAAGTCCATGAGGGAGATACCCATAGCACCTTTTGT
66 ACTAGCAGATCACGACATGAAAATATGTATAAGTCCATGAGGGAGATACCCATAGCACCTTTTGT
* ** * *
94108001 AAAAGTTTGTAGGGACAGTAAACACGTGATTTTGTATGATGACATGTGTGGCATAATCTAAAAAG
131 GAAAGTTCATAGGAACAGTAAACACGTGATTTTGTATAATGACATGTGTGGCATAATCTAAAAAG
94108066 CCTTCTG
196 CCTTCTG
* **
94108073 GGACCCATGAAAAGATATGATTGTATGAATATTCATGGTAATGGCTTCGATAATATGTAAATTGG
1 GGACCCATGAAAAGATATGATTGTATGAATATTCATGGTGATGGCTTCGATAATATGTAAACCGG
* * * *
94108138 A-TCGGCAGATCACGACATGAAAATGTGTATAAGTCCATGAAGGAGATACCCATAGCGCCTTTTG
66 ACT-AGCAGATCACGACATGAAAATATGTATAAGTCCATGAGGGAGATACCCATAGCACCTTTTG
* * *
94108202 TGAAAGTCCACCAAGATA-A-TAAACACGTGATTTTGTAT
130 TGAAAGTTCA-TAGGA-ACAGTAAACACGTGATTTTGTAT
94108240 GATGGTCTAT
Statistics
Matches: 316, Mismatches: 49, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
201 1 0.00
202 310 0.98
203 4 0.01
204 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (202 bp):
GGACCCATGAAAAGATATGATTGTATGAATATTCATGGTGATGGCTTCGATAATATGTAAACCGG
ACTAGCAGATCACGACATGAAAATATGTATAAGTCCATGAGGGAGATACCCATAGCACCTTTTGT
GAAAGTTCATAGGAACAGTAAACACGTGATTTTGTATAATGACATGTGTGGCATAATCTAAAAAG
CCTTCTG
Found at i:94112097 original size:20 final size:19
Alignment explanation
Indices: 94112074--94112135 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 19
94112064 AAATTTATAG
94112074 AATAATTATAGAATTATAAA
1 AATAATTATA-AATTATAAA
*
94112094 AATATATT-TAAATTTATATA
1 AATA-ATTATAAA-TTATAAA
*
94112114 AATCATTATAAAATTCATAAA
1 AATAATTAT-AAATT-ATAAA
94112135 A
1 A
94112136 GAATTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
19 5 0.15
20 18 0.53
21 11 0.32
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (19 bp):
AATAATTATAAATTATAAA
Found at i:94112105 original size:48 final size:47
Alignment explanation
Indices: 94112016--94112108 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 47
94112006 AAATATATTT
*
94112016 AAATTTATACGAATCATTAAAATTATTTAAAAAAATCTTAAATTTTAG
1 AAATTTATACGAATAATTAAAATTA-TTAAAAAAATCTTAAATTTTAG
94112064 AAATTTATA-GAATAATTATAGAATTA-TAAAAATATAT-TTAAATTT
1 AAATTTATACGAATAATTA-A-AATTATTAAAAA-A-ATCTTAAATTT
94112109 ATATAAATCA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
47 14 0.35
48 19 0.47
49 7 0.17
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (47 bp):
AAATTTATACGAATAATTAAAATTATTAAAAAAATCTTAAATTTTAG
Found at i:94112423 original size:19 final size:19
Alignment explanation
Indices: 94112383--94112424 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
94112373 TAAAGTAAAT
**
94112383 TTTTTTATAATTATTTTAA
1 TTTTTTATAATTATAATAA
94112402 TTTTTTATAATTTATAAT-A
1 TTTTTTATAA-TTATAATAA
94112421 TTTT
1 TTTT
94112425 AATAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTATAATTATAATAA
Found at i:94114615 original size:69 final size:69
Alignment explanation
Indices: 94114533--94114672 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
94114523 AGGGCTATGA
*
94114533 GTATAACTATAGGTATGGCGATGGCCTAGTGTGAATATGACTTGTTTGGGTTTATATATATATAT
1 GTATAACTATAGGTATGGCGATGGCCTAGTGTGAATATGACTTGTTTGGGTTTATATAAATATAT
94114598 GAGG
66 GAGG
*
94114602 GTATAACTATAGGTATGGTGATGGCCTAGTGTGAATATGACTTGTTTGGGTTTATATAAATATAT
1 GTATAACTATAGGTATGGCGATGGCCTAGTGTGAATATGACTTGTTTGGGTTTATATAAATATAT
94114667 GAGG
66 GAGG
94114671 GT
1 GT
94114673 TAATATGGTA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.38
Consensus pattern (69 bp):
GTATAACTATAGGTATGGCGATGGCCTAGTGTGAATATGACTTGTTTGGGTTTATATAAATATAT
GAGG
Found at i:94116644 original size:14 final size:14
Alignment explanation
Indices: 94116625--94116651 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
94116615 TTCAGTTCAC
94116625 TTCTTTTTTTCTTT
1 TTCTTTTTTTCTTT
94116639 TTCTTTTTTTCTT
1 TTCTTTTTTTCTT
94116652 CCGACTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTCTTTTTTTCTTT
Found at i:94124533 original size:13 final size:14
Alignment explanation
Indices: 94124517--94124547 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
94124507 ATACTTTTTA
94124517 TTTAAATTTAT-TT
1 TTTAAATTTATATT
94124530 TTTAAATTTATATT
1 TTTAAATTTATATT
94124544 TTTA
1 TTTA
94124548 CTTAAATTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTAAATTTATATT
Found at i:94136434 original size:11 final size:11
Alignment explanation
Indices: 94136418--94136451 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
94136408 AACAGGTTTC
94136418 TTTCTTTTCTT
1 TTTCTTTTCTT
94136429 TTTCTTTTCTT
1 TTTCTTTTCTT
94136440 TTT-TTTT-TT
1 TTTCTTTTCTT
94136449 TTT
1 TTT
94136452 GAACAACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 5 0.22
10 4 0.17
11 14 0.61
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:94136434 original size:15 final size:15
Alignment explanation
Indices: 94136414--94136450 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
94136404 AACAAACAGG
94136414 TTTC-TTTCTTTTCTT
1 TTTCTTTTCTTTT-TT
94136429 TTTCTTTTCTTTTTT
1 TTTCTTTTCTTTTTT
94136444 TTT-TTTT
1 TTTCTTTT
94136451 TGAACAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.19
15 9 0.43
16 8 0.38
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTCTTTTCTTTTTT
Found at i:94136451 original size:20 final size:20
Alignment explanation
Indices: 94136414--94136449 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94136404 AACAAACAGG
94136414 TTTCTTTCTTTTCTTTTTCT
1 TTTCTTTCTTTTCTTTTTCT
94136434 TTTCTTT-TTTT-TTTTT
1 TTTCTTTCTTTTCTTTTT
94136450 TTGAACAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.31
19 4 0.25
20 7 0.44
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (20 bp):
TTTCTTTCTTTTCTTTTTCT
Found at i:94141071 original size:85 final size:85
Alignment explanation
Indices: 94140928--94141092 Score: 312
Period size: 85 Copynumber: 1.9 Consensus size: 85
94140918 ACCATATAAG
*
94140928 AGAAGCAACATAATACCAAAGAGAAAAACACAATTGTCATCATAAATAACCTTTTGAATCTCAGG
1 AGAAGCAACATAATACCAAAGAGAAAAACACAATTGCCATCATAAATAACCTTTTGAATCTCAGG
94140993 AGTTATATGTCCAATACAAA
66 AGTTATATGTCCAATACAAA
*
94141013 AGAAGCAACATAATACCAAAGAGAAAAACACAATTGCCATCATAAATCACCTTTTGAATCTCAGG
1 AGAAGCAACATAATACCAAAGAGAAAAACACAATTGCCATCATAAATAACCTTTTGAATCTCAGG
94141078 AGTTATATGTCCAAT
66 AGTTATATGTCCAAT
94141093 CCTATCCTTA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (85 bp):
AGAAGCAACATAATACCAAAGAGAAAAACACAATTGCCATCATAAATAACCTTTTGAATCTCAGG
AGTTATATGTCCAATACAAA
Found at i:94157250 original size:21 final size:22
Alignment explanation
Indices: 94157226--94157266 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
94157216 TTTTTTTTCA
*
94157226 TTTGCTTCTGATTTT-ATTTAT
1 TTTGATTCTGATTTTGATTTAT
*
94157247 TTTGATTTTGATTTTGATTT
1 TTTGATTCTGATTTTGATTT
94157267 TCATGTTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.15, C:0.05, G:0.12, T:0.68
Consensus pattern (22 bp):
TTTGATTCTGATTTTGATTTAT
Found at i:94162204 original size:21 final size:20
Alignment explanation
Indices: 94162174--94162212 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
94162164 TTAAATTTTT
94162174 AAAAACTTAAAAATTCATTTA
1 AAAAACTTAAAAA-TCATTTA
*
94162195 AAAAATTTAAAAATCATT
1 AAAAACTTAAAAATCATT
94162213 AAATTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAACTTAAAAATCATTTA
Found at i:94172443 original size:19 final size:20
Alignment explanation
Indices: 94172415--94172458 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
94172405 AGAAACTTAA
94172415 AAAAATATAATTATAAAATT
1 AAAAATATAATTATAAAATT
*
94172435 AAAAA-ATAATTATAAACTT
1 AAAAATATAATTATAAAATT
94172454 AAAAA
1 AAAAA
94172459 CAATGAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAATATAATTATAAAATT
Found at i:94177704 original size:15 final size:14
Alignment explanation
Indices: 94177682--94177721 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
94177672 ATTCATGATA
94177682 TATA-TATTATTTT
1 TATACTATTATTTT
94177695 TATCACTATTATTTT
1 TAT-ACTATTATTTT
*
94177710 TATATTATTATT
1 TATACTATTATT
94177722 ATATTATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 3 0.12
14 9 0.38
15 12 0.50
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (14 bp):
TATACTATTATTTT
Found at i:94177713 original size:26 final size:25
Alignment explanation
Indices: 94177684--94177748 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 25
94177674 TCATGATATA
94177684 TATATTATTTTTATCACTATTATTT-T
1 TATATTATTTTTAT-ACTA-TATTTAT
* *
94177710 TATATTATTATTATATTATATTTAGT
1 TATATTATTTTTATACTATATTTA-T
*
94177736 TATATTTTTTTTA
1 TATATTATTTTTA
94177749 AATATTTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 5 0.15
25 3 0.09
26 25 0.76
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (25 bp):
TATATTATTTTTATACTATATTTAT
Found at i:94177915 original size:24 final size:24
Alignment explanation
Indices: 94177885--94177947 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
94177875 ATAGTTTTTT
94177885 TATATTGT-TATCATTTCTAATATA
1 TATATTGTATAT-ATTTCTAATATA
*
94177909 TATATTGTATATATTTTTAATATA
1 TATATTGTATATATTTCTAATATA
*
94177933 TTTA-TGTATATATTT
1 TATATTGTATATATTT
94177948 ATGTAGTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 11 0.31
24 22 0.61
25 3 0.08
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (24 bp):
TATATTGTATATATTTCTAATATA
Found at i:94178032 original size:25 final size:24
Alignment explanation
Indices: 94177999--94178064 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 24
94177989 TTCTTCTATG
*
94177999 TATA-TATTATATTTTTTTAATAC
1 TATATTATTATATATTTTTAATAC
94178022 TATATCTATTATATATTTTTAATAC
1 TATAT-TATTATATATTTTTAATAC
94178047 TATATTATGTATATATTT
1 TATATTAT-TATATATTT
94178065 CCACACATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 4 0.10
24 3 0.08
25 32 0.82
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (24 bp):
TATATTATTATATATTTTTAATAC
Found at i:94178158 original size:24 final size:24
Alignment explanation
Indices: 94178131--94178211 Score: 69
Period size: 24 Copynumber: 3.3 Consensus size: 24
94178121 CTGTCATATG
94178131 TATTATTTTCAATATATTTGTTAT
1 TATTATTTTCAATATATTTGTTAT
* *
94178155 TATTATTTATCACTTTATTT-TAATAT
1 TATTATTT-TCAATATATTTGT--TAT
*
94178181 TATTA-TTTC-ATCATACTTGTTTAT
1 TATTATTTTCAAT-ATATTTG-TTAT
94178205 TATTATT
1 TATTATT
94178212 ATTATTATTA
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
23 1 0.02
24 23 0.51
25 12 0.27
26 9 0.20
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.62
Consensus pattern (24 bp):
TATTATTTTCAATATATTTGTTAT
Found at i:94178329 original size:3 final size:3
Alignment explanation
Indices: 94178201--94178315 Score: 92
Period size: 3 Copynumber: 38.0 Consensus size: 3
94178191 TCATACTTGT
*
94178201 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * ** * *
94178249 GTA GTA TTA TCA TCA TTA ACA TT- TATA TATA TTT TTA TGTA CATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA TTA T-TA -TTA TTA
94178297 TTA TT- TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
94178316 CCAAATATAT
Statistics
Matches: 94, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
2 5 0.05
3 80 0.85
4 9 0.10
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:94190545 original size:90 final size:90
Alignment explanation
Indices: 94190363--94190774 Score: 408
Period size: 90 Copynumber: 4.6 Consensus size: 90
94190353 CACTGAGGTA
* * * *
94190363 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGTGAGAGATAAGTTGAG-CTCGGGCCACA
1 TTTTCAATTTCTGTTTTCGAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGCCACA
* *
94190427 TGCCAAGGTATTTTCAAAATTTCAT
66 TGCCAAGGTATTTTCAAAATTCCGT
* *
94190452 TTTTCAATTTCTGTTTTTGAAAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCAGGCCACA
1 TTTTCAATTTCTGTTTTCGAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGCCACA
94190517 TGCCAAGGTATTTTCAAAATTCCGT
66 TGCCAAGGTATTTTCAAAATTCCGT
* * * *
94190542 TTTTCAATTTCTGTTTCTTCCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCTTTAAG--A
1 TTTTCAATTTCTG-TT-TTCGAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGCCA
* ** * *
94190605 CACGCTGAGGTATTTTC-AATTTCTGTT
64 CATGCCAAGGTATTTTCAAAATTCCG-T
* * * * * * *
94190632 TTTTCAATTTATATCTTTCG-AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCTTCGGGTCAC
1 TTTTCAATTTCTGT-TTTCGAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGCCAC
* * * *
94190696 ATGTCGAGGTATTTTCAAAATT-TGC
65 ATGCCAAGGTATTTTCAAAATTCCGT
* *** * * * *
94190721 TTTTCAA-AT-TAAATTCCAAAAACCAACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTCAATTTCTGTTTTCGAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT
94190775 TGGCTCACGT
Statistics
Matches: 276, Mismatches: 38, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
86 3 0.01
87 36 0.13
88 36 0.13
89 65 0.24
90 91 0.33
91 6 0.02
92 39 0.14
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (90 bp):
TTTTCAATTTCTGTTTTCGAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGCCACA
TGCCAAGGTATTTTCAAAATTCCGT
Found at i:94194480 original size:44 final size:44
Alignment explanation
Indices: 94194417--94194522 Score: 194
Period size: 44 Copynumber: 2.4 Consensus size: 44
94194407 CAGATTTGGC
*
94194417 CTCCCTGAAGTTGCAGTGGAACAGGTCAAAGTTGCAAGTCTTGT
1 CTCCCTGAAGTTGCAGTGGAACAGGTCAAAGTTGCAAGTCTTGA
*
94194461 CTCCCTGAAGTTGCAGTGGAGCAGGTCAAAGTTGCAAGTCTTGA
1 CTCCCTGAAGTTGCAGTGGAACAGGTCAAAGTTGCAAGTCTTGA
94194505 CTCCCTGAAGTTGCAGTG
1 CTCCCTGAAGTTGCAGTG
94194523 AAGCTGATCG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (44 bp):
CTCCCTGAAGTTGCAGTGGAACAGGTCAAAGTTGCAAGTCTTGA
Found at i:94196137 original size:15 final size:14
Alignment explanation
Indices: 94196115--94196154 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
94196105 ATTCATGATA
94196115 TATA-TATTATTTT
1 TATACTATTATTTT
94196128 TATCACTATTATTTT
1 TAT-ACTATTATTTT
*
94196143 TATATTATTATT
1 TATACTATTATT
94196155 ATATTATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 3 0.12
14 9 0.38
15 12 0.50
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (14 bp):
TATACTATTATTTT
Found at i:94196225 original size:3 final size:3
Alignment explanation
Indices: 94196213--94196282 Score: 108
Period size: 3 Copynumber: 23.7 Consensus size: 3
94196203 TATATGCATA
94196213 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
94196260 TA- TATT TAT TAT TAA TAT TAT TA
1 TAT TA-T TAT TAT TAT TAT TAT TA
94196283 GTACTAGTAT
Statistics
Matches: 62, Mismatches: 2, Indels: 6
0.89 0.03 0.09
Matches are distributed among these distances:
2 4 0.06
3 56 0.90
4 2 0.03
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:94196418 original size:12 final size:12
Alignment explanation
Indices: 94196380--94196427 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
94196370 ATCATTTCTA
*
94196380 ATATATATATTGT
1 ATATATTTA-TGT
*
94196393 ATATATTT-T-A
1 ATATATTTATGT
94196403 ATATATTTATGT
1 ATATATTTATGT
94196415 ATATATTTATGT
1 ATATATTTATGT
94196427 A
1 A
94196428 GTTTTCGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
10 8 0.27
11 2 0.07
12 13 0.43
13 7 0.23
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (12 bp):
ATATATTTATGT
Found at i:94196418 original size:22 final size:24
Alignment explanation
Indices: 94196361--94196422 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
94196351 ATAGTTTTTT
94196361 TATATTGT-TATCATTTCTAATATA
1 TATATTGTATAT-ATTTCTAATATA
94196385 TATATTGTATATATTT-TAATATA
1 TATATTGTATATATTTCTAATATA
*
94196408 TTTA-TGTATATATTT
1 TATATTGTATATATTT
94196423 ATGTAGTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
22 11 0.31
23 10 0.28
24 12 0.33
25 3 0.08
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (24 bp):
TATATTGTATATATTTCTAATATA
Found at i:94196672 original size:3 final size:3
Alignment explanation
Indices: 94196666--94196717 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
94196656 ATACTTGTTT
94196666 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
94196714 TTA T
1 TTA T
94196718 CATCATCATC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:94200345 original size:43 final size:43
Alignment explanation
Indices: 94200265--94200453 Score: 301
Period size: 43 Copynumber: 4.4 Consensus size: 43
94200255 GATAAATCCC
* * *
94200265 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
94200306 GCAGGCTTAGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
94200349 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
94200392 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
94200435 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
94200454 AATGATATGT
Statistics
Matches: 137, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
41 15 0.11
42 2 0.01
43 120 0.88
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:94207183 original size:4 final size:4
Alignment explanation
Indices: 94207176--94207209 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
94207166 TAAACAAACA
*
94207176 AAAG AAAG AAAG AAAG AAA- AAAG ATAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
94207210 CAAACTGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (4 bp):
AAAG
Found at i:94207204 original size:15 final size:15
Alignment explanation
Indices: 94207180--94207209 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
94207170 CAAACAAAAG
94207180 AAAGAAAGAAAGAAA
1 AAAGAAAGAAAGAAA
*
94207195 AAAGATAGAAAGAAA
1 AAAGAAAGAAAGAAA
94207210 CAAACTGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (15 bp):
AAAGAAAGAAAGAAA
Found at i:94209296 original size:40 final size:40
Alignment explanation
Indices: 94209176--94209312 Score: 104
Period size: 40 Copynumber: 3.5 Consensus size: 40
94209166 CTTCGAGTCA
* * * *
94209176 ATGAGACACT-GGTGTCAATTTACTACTTTAAATTAAT-TCA
1 ATGAGACACTGGGTGTCAAATTATTACTTTGAATT-ATCT-G
* * * * * * *
94209216 ATGAGGCATTGGGTG-CCAA-T-TTACTTCGATTTAGCCG
1 ATGAGACACTGGGTGTCAAATTATTACTTTGAATTATCTG
94209253 ATGAGACACTGGGTGTCAAATTATTACTTTGAATTATCTG
1 ATGAGACACTGGGTGTCAAATTATTACTTTGAATTATCTG
* *
94209293 ATGAGGCACTAGGTGTCAAA
1 ATGAGACACTGGGTGTCAAA
94209313 CTAGTGTGTT
Statistics
Matches: 72, Mismatches: 20, Indels: 10
0.71 0.20 0.10
Matches are distributed among these distances:
37 14 0.19
38 11 0.15
39 2 0.03
40 41 0.57
41 4 0.06
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (40 bp):
ATGAGACACTGGGTGTCAAATTATTACTTTGAATTATCTG
Found at i:94211560 original size:18 final size:19
Alignment explanation
Indices: 94211537--94211578 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
94211527 AATTCTTTAA
*
94211537 ATATTATAAA-AATATAA-T
1 ATATTA-AAATAATAAAATT
94211555 ATATTAAAATAATAAAATT
1 ATATTAAAATAATAAAATT
94211574 ATATT
1 ATATT
94211579 TTTTATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 3 0.14
18 12 0.57
19 6 0.29
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
ATATTAAAATAATAAAATT
Found at i:94212521 original size:22 final size:24
Alignment explanation
Indices: 94212493--94212544 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
94212483 TTTTAGAAAC
94212493 TTTAAAAAT--AAA-AAAAATAATT
1 TTTAAAAATGAAAATAAAAAT-ATT
94212515 TTTAAAAATGAAAATAAAAATATT
1 TTTAAAAATGAAAATAAAAATATT
94212539 TTTAAA
1 TTTAAA
94212545 GGCATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.33
24 12 0.44
25 6 0.22
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (24 bp):
TTTAAAAATGAAAATAAAAATATT
Found at i:94215904 original size:6 final size:7
Alignment explanation
Indices: 94215887--94215911 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
94215877 TCTACAATCT
94215887 TTTTTTC
1 TTTTTTC
94215894 TTTTTTC
1 TTTTTTC
94215901 TTTTTTC
1 TTTTTTC
94215908 TTTT
1 TTTT
94215912 CAAGGCTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:94218747 original size:26 final size:24
Alignment explanation
Indices: 94218710--94218759 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
94218700 GAAAATCAAA
94218710 ATATTTAT-AAAAATTCTAAAATTT
1 ATATTTATAAAAAATT-TAAAATTT
94218734 ATATTTATTAAAAAAATTTAAAATTT
1 ATATTTA-T-AAAAAATTTAAAATTT
94218760 TTTAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 7 0.30
25 1 0.04
26 8 0.35
27 7 0.30
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATATTTATAAAAAATTTAAAATTT
Found at i:94218751 original size:19 final size:20
Alignment explanation
Indices: 94218727--94218767 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
94218717 TAAAAATTCT
*
94218727 AAAATTT-ATATTTATTAAA
1 AAAATTTAAAATTTATTAAA
*
94218746 AAAATTTAAAATTTTTTAAA
1 AAAATTTAAAATTTATTAAA
94218766 AA
1 AA
94218768 TATATATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AAAATTTAAAATTTATTAAA
Found at i:94220940 original size:21 final size:21
Alignment explanation
Indices: 94220916--94220969 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
94220906 AATAAAAATT
*
94220916 TAAAAAAATAAATAAAAGAAA
1 TAAAAAAATAAATAAAACAAA
* *
94220937 TAAAAATATTAAATAAAACACA
1 TAAAAA-AATAAATAAAACAAA
*
94220959 TAAAATAATAA
1 TAAAAAAATAA
94220970 TAACAATAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (21 bp):
TAAAAAAATAAATAAAACAAA
Found at i:94220942 original size:22 final size:22
Alignment explanation
Indices: 94220879--94220972 Score: 59
Period size: 22 Copynumber: 4.1 Consensus size: 22
94220869 AGACAATAAG
94220879 TAAAT-AAACAAATAAAAAAAA
1 TAAATAAAACAAATAAAAAAAA
* *
94220900 GGTCTAAAT-AAA-AATTTAAAAAAA
1 ----TAAATAAAACAAATAAAAAAAA
* * *
94220924 TAAATAAAAGAAATAAAAATAT
1 TAAATAAAACAAATAAAAAAAA
*
94220946 TAAATAAAACACATAAAATAATAA
1 TAAATAAAACAAATAAAA-AA-AA
94220970 TAA
1 TAA
94220973 CAATAATTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
20 5 0.09
21 3 0.05
22 24 0.44
23 1 0.02
24 14 0.25
25 8 0.15
ACGTcount: A:0.71, C:0.04, G:0.03, T:0.21
Consensus pattern (22 bp):
TAAATAAAACAAATAAAAAAAA
Found at i:94222960 original size:16 final size:16
Alignment explanation
Indices: 94222924--94222962 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
94222914 CTCCGATGAA
*
94222924 CTTCCAACCGATTGAG
1 CTTCCAACCGATCGAG
* *
94222940 ATTCCAACCGGTCGAG
1 CTTCCAACCGATCGAG
94222956 CTTCCAA
1 CTTCCAA
94222963 ATATCTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (16 bp):
CTTCCAACCGATCGAG
Found at i:94224499 original size:59 final size:59
Alignment explanation
Indices: 94224432--94224551 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
94224422 CATGCACATC
94224432 CACTAACTTTTTAAATGGTATAATTACTATATTAGTCCATTATTTTTCCTTTCCATAGT
1 CACTAACTTTTTAAATGGTATAATTACTATATTAGTCCATTATTTTTCCTTTCCATAGT
94224491 CACTAACTTTTTAAATGGTATAATTACTATATTAGTCCATTATTTTTCCTTTCCATAGT
1 CACTAACTTTTTAAATGGTATAATTACTATATTAGTCCATTATTTTTCCTTTCCATAGT
94224550 CA
1 CA
94224552 TTTATCCCTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.29, C:0.17, G:0.07, T:0.47
Consensus pattern (59 bp):
CACTAACTTTTTAAATGGTATAATTACTATATTAGTCCATTATTTTTCCTTTCCATAGT
Found at i:94227144 original size:21 final size:20
Alignment explanation
Indices: 94227108--94227155 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
94227098 AAATAGTGAG
*
94227108 AATT-TATTTTCTAAATATA
1 AATTCTATTTTCTAAATAAA
*
94227127 AATTCTATTTTTTGAAATAAA
1 AATTCTATTTTCT-AAATAAA
94227148 AATTCTAT
1 AATTCTAT
94227156 CAGTTTCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.16
20 7 0.28
21 14 0.56
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (20 bp):
AATTCTATTTTCTAAATAAA
Found at i:94230042 original size:50 final size:50
Alignment explanation
Indices: 94229988--94230084 Score: 194
Period size: 50 Copynumber: 1.9 Consensus size: 50
94229978 TCAATCGAAT
94229988 TACAAAATGTTAAACCATTTGTCTGATAAATATATATTATTGAGAGGAAG
1 TACAAAATGTTAAACCATTTGTCTGATAAATATATATTATTGAGAGGAAG
94230038 TACAAAATGTTAAACCATTTGTCTGATAAATATATATTATTGAGAGG
1 TACAAAATGTTAAACCATTTGTCTGATAAATATATATTATTGAGAGG
94230085 GATGAGAATG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.35
Consensus pattern (50 bp):
TACAAAATGTTAAACCATTTGTCTGATAAATATATATTATTGAGAGGAAG
Found at i:94243862 original size:20 final size:19
Alignment explanation
Indices: 94243804--94243875 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
94243794 TTTATCAAAT
94243804 ATATTTAAATTATTTATT-
1 ATATTTAAATTATTTATTA
*
94243822 ATATTT-AA-TACTTAATTA
1 ATATTTAAATTA-TTTATTA
94243840 ATATTTAAATTATTTATTTA
1 ATATTTAAATTATTTA-TTA
94243860 ATATTTAAATTTATTT
1 ATATTTAAA-TTATTT
94243876 CAATCCAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
16 2 0.04
17 7 0.15
18 12 0.26
19 5 0.11
20 14 0.30
21 6 0.13
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.58
Consensus pattern (19 bp):
ATATTTAAATTATTTATTA
Found at i:94244984 original size:96 final size:94
Alignment explanation
Indices: 94244820--94245100 Score: 363
Period size: 92 Copynumber: 3.0 Consensus size: 94
94244810 CCAGAATTAT
*
94244820 GTATGAATGACATGGAAAAAATTGTTGAAATATCATTAAATAATTAGAAATAGACAATGGATGAT
1 GTATGAATGACATGGAAAAAATTGTTGAAATATCATTAAATAATTAGAAAGAGAC-ATGGATGAT
* *
94244885 GTGGTAGGAAGGGTTTATAAAATAATTTCTC
65 GTGGT-GGAAGGATTCATAAAATAATTTCTC
* *
94244916 GTATGAATGACATAGG-AAAAATTGTTGAAATATCGTTAAATAATTAAAAAGAGATCATGGATGA
1 GTATGAATGACAT-GGAAAAAATTGTTGAAATATCATTAAATAATTAGAAAGAGA-CATGGATGA
* *
94244980 TGTGGT-G--GGATCCATAAAATAATATCTC
64 TGTGGTGGAAGGATTCATAAAATAATTTCTC
* * * *
94245008 ATATGAATGACATGGAAAAAATTATTGAAATGTCATTAAATAATTGGAAAGAGACCATGGATGAT
1 GTATGAATGACATGGAAAAAATTGTTGAAATATCATTAAATAATTAGAAAGAGA-CATGGATGAT
* *
94245073 GTGGTTGGAAAGATTCAAAAAATAATTT
65 GTGG-TGGAAGGATTCATAAAATAATTT
94245101 TTTTAATAGA
Statistics
Matches: 160, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
91 2 0.01
92 76 0.47
93 1 0.01
94 2 0.01
96 76 0.47
97 3 0.02
ACGTcount: A:0.43, C:0.06, G:0.21, T:0.30
Consensus pattern (94 bp):
GTATGAATGACATGGAAAAAATTGTTGAAATATCATTAAATAATTAGAAAGAGACATGGATGATG
TGGTGGAAGGATTCATAAAATAATTTCTC
Found at i:94251548 original size:21 final size:20
Alignment explanation
Indices: 94251521--94251572 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
94251511 TTTATATTTT
* *
94251521 TTAAAAAAATTATAACAAAT
1 TTAAAAAAATTATAAAAAAA
94251541 TCTAAAAAAA-TATAAAAAAA
1 T-TAAAAAAATTATAAAAAAA
*
94251561 TAAAAAAAATTA
1 TTAAAAAAATTA
94251573 GAATAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 7 0.26
20 12 0.44
21 8 0.30
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (20 bp):
TTAAAAAAATTATAAAAAAA
Found at i:94251568 original size:9 final size:10
Alignment explanation
Indices: 94251522--94251570 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
94251512 TTATATTTTT
94251522 TAAAAAAATTA
1 TAAAAAAA-TA
* * *
94251533 TAACAAATTC
1 TAAAAAAATA
94251543 TAAAAAAATA
1 TAAAAAAATA
94251553 TAAAAAAATA
1 TAAAAAAATA
94251563 -AAAAAAAT
1 TAAAAAAAT
94251571 TAGAATAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
9 8 0.25
10 18 0.56
11 6 0.19
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (10 bp):
TAAAAAAATA
Found at i:94251811 original size:21 final size:20
Alignment explanation
Indices: 94251782--94251820 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
94251772 ACTCGATTCA
94251782 ATTTGACTCAACTCGAATTTT
1 ATTTGACTCAACTC-AATTTT
* *
94251803 ATTTTACTCGACTCAATT
1 ATTTGACTCAACTCAATT
94251821 CGAAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.44
Consensus pattern (20 bp):
ATTTGACTCAACTCAATTTT
Found at i:94257541 original size:16 final size:16
Alignment explanation
Indices: 94257522--94257552 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94257512 TTATTTTAAA
*
94257522 TTAACTAATTTTTCAT
1 TTAAATAATTTTTCAT
94257538 TTAAATAATTTTTCA
1 TTAAATAATTTTTCA
94257553 CAACTCAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (16 bp):
TTAAATAATTTTTCAT
Found at i:94258779 original size:12 final size:12
Alignment explanation
Indices: 94258764--94258788 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94258754 ATCTCAACAG
94258764 AAATCTACTTCA
1 AAATCTACTTCA
94258776 AAATCTACTTCA
1 AAATCTACTTCA
94258788 A
1 A
94258789 TTGTGTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATCTACTTCA
Found at i:94269063 original size:21 final size:21
Alignment explanation
Indices: 94269049--94269090 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 21
94269039 TAAATTTATA
94269049 ACAAAACAATATAAACAATAT
1 ACAAAACAATATAAACAATAT
94269070 ACAAAACAATATGGAAACAAT
1 ACAAAACAATAT--AAACAAT
94269091 TTGAAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.64, C:0.14, G:0.05, T:0.17
Consensus pattern (21 bp):
ACAAAACAATATAAACAATAT
Found at i:94271267 original size:22 final size:23
Alignment explanation
Indices: 94271242--94271287 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
94271232 AAGGAGGGGG
94271242 ATCGATGGTATTTTGAGGA-AGA
1 ATCGATGGTATTTTGAGGAGAGA
* *
94271264 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATGGTATTTTGAGGAGAGA
94271287 A
1 A
94271288 GAATTGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.30, C:0.04, G:0.33, T:0.33
Consensus pattern (23 bp):
ATCGATGGTATTTTGAGGAGAGA
Found at i:94271978 original size:79 final size:78
Alignment explanation
Indices: 94271886--94272039 Score: 247
Period size: 79 Copynumber: 2.0 Consensus size: 78
94271876 ATAAAGTATG
*
94271886 GTTTTAATTAATAATAAAAACAAAATAGTAT-GGGGAATGGTTTTAATTAATAATAAAAACAAAA
1 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAAT-AAAACAAAA
*
94271950 TAGTATGGGGGAATA
64 TAGCATGGGGGAATA
* *
94271965 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAGTAGTTTTAATTAATAATAAAACAAAGTA
1 GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAACAAAATA
94272030 GCATGGGGGA
66 GCATGGGGGA
94272040 GTGGAATCAA
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
78 34 0.49
79 36 0.51
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.30
Consensus pattern (78 bp):
GTTTTAATTAATAATAAAACAAAATAGTATGGGGGAATAGTTTTAATTAATAATAAAACAAAATA
GCATGGGGGAATA
Found at i:94272041 original size:39 final size:40
Alignment explanation
Indices: 94271886--94272039 Score: 251
Period size: 39 Copynumber: 3.9 Consensus size: 40
94271876 ATAAAGTATG
*
94271886 GTTTTAATTAATAATAAAAACAAAATAGTAT-GGGGAATG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
94271925 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
*
94271965 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAGTA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
* *
94272004 GTTTTAATTAATAAT-AAAACAAAGTAGCATGGGGGA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGA
94272040 GTGGAATCAA
Statistics
Matches: 110, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 88 0.80
40 22 0.20
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.30
Consensus pattern (40 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATA
Found at i:94284846 original size:204 final size:203
Alignment explanation
Indices: 94284468--94285250 Score: 1272
Period size: 204 Copynumber: 3.8 Consensus size: 203
94284458 ATAGGCCCAG
* *
94284468 CATAACAGATCTGGCCTTCAGATGTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGT
1 CATAGCAGATCTCGCCTTCAGATGTT-TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGT
94284533 TTACAA-GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTA
65 TTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTA
94284597 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGA
130 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGA
94284662 GAGCAGACA
195 GAGCAGACA
94284671 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
94284736 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
64 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
94284801 AAGATGATTT-TCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGG
129 AAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGG
94284865 AGAGCAGACA
194 AGAGCAGACA
94284875 CATAGCAGATCTCGCCTTCAGATGATTTCACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
1 CATAGCAGATCTCGCCTTCAGATG-TTT-ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
*
94284940 TTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGA-GAAAGCAAATC
64 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATG-AAGCAAATC
*
94285004 TAAGATGATTTGTCGTCTCTGTATCAGTCAGA-AACGAATCGAAGTTTGGCATCTTCACTTTGAT
128 TAAGATGATTTGTCGTCTCTGTAT-TGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGAT
94285068 GGAGAGCAGACA
192 GGAGAGCAGACA
* * * *
94285080 CATAGCAGATCTCACCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGTTT-GCATCCTTATG
1 CATAGCAGATCTCGCCTTCAGATGTTTA--CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTG
* * * * * *
94285144 CTTACAAGGAGCAAATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCT
64 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCT
* * * * *
94285208 AAGATGATTTGGCATCTTTGTATTGTCAGGGAACAAATCGAAG
129 AAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAG
94285251 AAATAGATTT
Statistics
Matches: 549, Mismatches: 21, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
202 5 0.01
203 94 0.17
204 277 0.50
205 167 0.30
206 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (203 bp):
CATAGCAGATCTCGCCTTCAGATGTTTACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGTT
TACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAA
GATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAG
AGCAGACA
Found at i:94285425 original size:88 final size:88
Alignment explanation
Indices: 94285285--94285741 Score: 375
Period size: 88 Copynumber: 5.2 Consensus size: 88
94285275 AGACGGGGGG
* * * *
94285285 CAGATCAAAGATAGCAGATAT-AGCCTTCCTGAG-TTACAGTGAAGCAGATCGAAGATTTCAGCA
1 CAGATCGAAGATAGCAGATCTGA-CATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCA
94285348 TGGCATCCCTGTGCTTATAGGGAA
65 TGGCATCCCTGTGCTTATAGGGAA
*
94285372 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTAGAGTGAAGCAGATCGAAGATTTC-GCAT
1 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCAT
94285436 GGCATCCCTGTGC-TATAGGGAA
66 GGCATCCCTGTGCTTATAGGGAA
* * * * * * * * * * **
94285458 CA-AGTTGAAAACAGCAGATTTGGCATCCCTATGCTTATAGGGAA-CAGATCGAATATAGCAG-A
1 CAGA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCA
* * * **
94285520 TCTGACATTCCTGTGCTTACAGTAAA
65 --TGGCATCCCTGTGCTTATAGGGAA
* ** * * * * * * *
94285546 GTAGATCGAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAA-CA-AGTTGAAAAATAGT-
1 -CAGATCGAAGATAGCAGATC-TGACATTCCTGTGCTTACAGTGAAGCAGA-TCG-AAGAT-TTC
94285606 AG-ATTTGGCATCCCTGTGCTTATAGGGAA
61 AGCA--TGGCATCCCTGTGCTTATAGGGAA
* *
94285635 CAGATCGAAGATAGCAGATCTGACATTCTTATGCTTACAGTGAAGCAGATCGAAGATTTCAGCAT
1 CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCAT
* *
94285700 GGCATCCCTATGTTTATAGGGAA
66 GGCATCCCTGTGCTTATAGGGAA
*
94285723 CA-AGTTGAAGATAGCAGAT
1 CAGA-TCGAAGATAGCAGAT
94285742 TTGGCATCCC
Statistics
Matches: 295, Mismatches: 55, Indels: 39
0.76 0.14 0.10
Matches are distributed among these distances:
85 14 0.05
86 43 0.15
87 58 0.20
88 112 0.38
89 60 0.20
90 7 0.02
91 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (88 bp):
CAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCAT
GGCATCCCTGTGCTTATAGGGAA
Found at i:94285498 original size:44 final size:45
Alignment explanation
Indices: 94285435--94285821 Score: 296
Period size: 44 Copynumber: 8.8 Consensus size: 45
94285425 AGATTTCGCA
* * *
94285435 TGGCATCCCTGTGC-TATAGGGAACAAG-TTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
* * *
94285478 TGGCATCCCTATGCTTATAGGGAAC-AGATCGAATATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
* * * ** ** **
94285522 TGACATTCCTGTGCTTACAGTAAAGTAGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAG-ATT
* * *
94285566 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAAATAGTAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCG-AAGATAGCAGATT
*
94285611 TGGCATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
* * * * * * **
94285655 TGACATTCTTATGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGATCGAAGATAGCAG-ATT
* * *
94285699 TGGCATCCCTATGTTTATAGGGAACAAG-TTGAAGATAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
* * * ** * *
94285743 TGGCATCCCTATGTTTATAGGTAACAAG-TTAAAGACAGCGGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
* *
94285787 TGGCATCCCTGTGTTTATAGGGAAC-AGATCTAAGA
1 TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGA
94285822 AACAGATCGA
Statistics
Matches: 274, Mismatches: 56, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
42 1 0.00
43 31 0.11
44 185 0.68
45 55 0.20
46 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (45 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGATCGAAGATAGCAGATT
Found at i:94285649 original size:133 final size:132
Alignment explanation
Indices: 94285348--94285768 Score: 684
Period size: 133 Copynumber: 3.2 Consensus size: 132
94285338 GATTTCAGCA
* *
94285348 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTAGAGT
1 TGGCATCCCTATGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
*
94285413 GAAGCAGATCGAAGATTTC-GCATGGCATCCCTGTGC-TATAGGGAACAAGTTGAAAACAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGA
94285476 TT
131 TT
*
94285478 TGGCATCCCTATGCTTATAGGGAACAGATCGAATATAGCAGATCTGACATTCCTGTGCTTACAGT
1 TGGCATCCCTATGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
* * *
94285543 AAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAAATAGTAG
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTG-AAAATAGCAG
94285608 ATT
130 ATT
* * *
94285611 TGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCTTATGCTTACAGT
1 TGGCATCCCTATGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
* * *
94285676 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
66 GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGA
94285741 TT
131 TT
* *
94285743 TGGCATCCCTATGTTTATAGGTAACA
1 TGGCATCCCTATGCTTATAGGGAACA
94285769 AGTTAAAGAC
Statistics
Matches: 268, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
130 79 0.29
131 17 0.06
132 50 0.19
133 122 0.46
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
TGGCATCCCTATGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
GAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGA
TT
Found at i:94286299 original size:22 final size:23
Alignment explanation
Indices: 94286274--94286319 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
94286264 AAAGAGGGGG
94286274 ATCGATGGTATTTTGAGGA-AGA
1 ATCGATGGTATTTTGAGGAGAGA
* *
94286296 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATGGTATTTTGAGGAGAGA
94286319 A
1 A
94286320 GAGATTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.30, C:0.04, G:0.33, T:0.33
Consensus pattern (23 bp):
ATCGATGGTATTTTGAGGAGAGA
Found at i:94286325 original size:23 final size:22
Alignment explanation
Indices: 94286281--94286330 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
94286271 GGGATCGATG
**
94286281 GTATTTTGAGGAAGAATCGATT
1 GTATTTTGAGGAAGAAGAGATT
*
94286303 GTATTTTGGGGAGAGAAGAGATT
1 GTATTTTGAGGA-AGAAGAGATT
94286326 GTATT
1 GTATT
94286331 AGAGGGGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (22 bp):
GTATTTTGAGGAAGAAGAGATT
Found at i:94286903 original size:22 final size:22
Alignment explanation
Indices: 94286877--94286919 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
94286867 TTTTTTTGTT
*
94286877 GTTTTTTT-TCTTAAAAAAAAG
1 GTTTTTTTATCATAAAAAAAAG
*
94286898 GTTTTTTTATGATAAAAAAAAG
1 GTTTTTTTATCATAAAAAAAAG
94286920 AGAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (22 bp):
GTTTTTTTATCATAAAAAAAAG
Found at i:94287089 original size:39 final size:39
Alignment explanation
Indices: 94286935--94287085 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
94286925 ATAAAGTATG
94286935 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
94286974 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
*
94287013 GTTTTAATTAATAAT-AAAACAAAATAGTATGGGGGAGTA
1 GTTTTAATTAATAATAAAAACAAAATAGTAT-GGGGAATA
* *
94287052 GTTTTAATTAATAAT-AAAACAAAGTAGCATGGGG
1 GTTTTAATTAATAATAAAAACAAAATAGTATGGGG
94287086 GAGTGGAATC
Statistics
Matches: 108, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
38 19 0.18
39 89 0.82
ACGTcount: A:0.48, C:0.03, G:0.18, T:0.30
Consensus pattern (39 bp):
GTTTTAATTAATAATAAAAACAAAATAGTATGGGGAATA
Found at i:94289551 original size:13 final size:14
Alignment explanation
Indices: 94289535--94289567 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
94289525 AGAACATAGT
94289535 TAAAATTAAT-ATA
1 TAAAATTAATCATA
*
94289548 TAAATTTAATCATA
1 TAAAATTAATCATA
94289562 TAAAAT
1 TAAAAT
94289568 ATTAATTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAAATTAATCATA
Found at i:94295000 original size:7 final size:7
Alignment explanation
Indices: 94294988--94295012 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
94294978 AAACCAAGCT
94294988 TACTTTC
1 TACTTTC
94294995 TACTTTC
1 TACTTTC
94295002 TACTTTC
1 TACTTTC
94295009 TACT
1 TACT
94295013 AAGTAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (7 bp):
TACTTTC
Found at i:94298330 original size:26 final size:26
Alignment explanation
Indices: 94298295--94298350 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
94298285 GTGGTTATTG
*
94298295 AACTCTTAAGGGAGTTGCCTACCTTGA
1 AACTCTTAAGCGAGTTGCCTACCTT-A
94298322 AACTC-TAAGCGAGTTGCCTACCTTA
1 AACTCTTAAGCGAGTTGCCTACCTTA
94298347 AACT
1 AACT
94298351 TACTGAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 5 0.18
26 18 0.64
27 5 0.18
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
AACTCTTAAGCGAGTTGCCTACCTTA
Found at i:94301035 original size:29 final size:29
Alignment explanation
Indices: 94301002--94301063 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
94300992 TTTGTTCTTC
* *
94301002 TTTCTTAGAGAAAAATGATCGCATCAAGT
1 TTTCTTAGAGAAAAATGATCACATCAAGA
94301031 TTTCTTAGAGAAAAATGATCACATCAAGA
1 TTTCTTAGAGAAAAATGATCACATCAAGA
94301060 TTTC
1 TTTC
94301064 AAGGAGAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (29 bp):
TTTCTTAGAGAAAAATGATCACATCAAGA
Found at i:94301070 original size:29 final size:29
Alignment explanation
Indices: 94301002--94301071 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
94300992 TTTGTTCTTC
* * *
94301002 TTTCTTAGAGAAAAATGATCGCATCAAGT
1 TTTCTAAGAGAAAAATGATCACATCAAGA
*
94301031 TTTCTTAGAGAAAAATGATCACATCAAGA
1 TTTCTAAGAGAAAAATGATCACATCAAGA
94301060 TTTC-AAGGAGAA
1 TTTCTAA-GAGAA
94301072 CACATTGCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (29 bp):
TTTCTAAGAGAAAAATGATCACATCAAGA
Found at i:94309655 original size:25 final size:26
Alignment explanation
Indices: 94309625--94309673 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
94309615 GTAGTTATTT
*
94309625 AACTCTTAG-GAGTTGCCTACCTTGA
1 AACTCTAAGCGAGTTGCCTACCTTGA
94309650 AACTCTAAGCGAGTTGCCTACCTT
1 AACTCTAAGCGAGTTGCCTACCTT
94309674 AAGCTTACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (26 bp):
AACTCTAAGCGAGTTGCCTACCTTGA
Found at i:94312187 original size:22 final size:22
Alignment explanation
Indices: 94312146--94312204 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
94312136 ATTATAAATT
* *
94312146 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
94312166 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
* *
94312188 AAAT-GATACTAAAACAA
1 AAATAAATATTAAAACAA
94312205 TTCTTAAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 7 0.21
21 17 0.52
22 9 0.27
ACGTcount: A:0.68, C:0.07, G:0.02, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:94316940 original size:17 final size:17
Alignment explanation
Indices: 94316901--94316948 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
94316891 ATATGTTTAA
94316901 TAAAAATATAAAAATTAT
1 TAAAAAT-TAAAAATTAT
*
94316919 GAAAAATTAAAAATCT-T
1 TAAAAATTAAAAAT-TAT
*
94316936 TAAAATTTAAAAA
1 TAAAAATTAAAAA
94316949 CAAAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 19 0.73
18 7 0.27
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
TAAAAATTAAAAATTAT
Found at i:94317868 original size:28 final size:28
Alignment explanation
Indices: 94317827--94317880 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
94317817 GTAACTATTC
* *
94317827 ACGTATTTGGGTTTGAACTTTTTTTTTT
1 ACGTATCTGAGTTTGAACTTTTTTTTTT
94317855 ACGTATCTGAGTTTGAACTTTTTTTT
1 ACGTATCTGAGTTTGAACTTTTTTTT
94317881 CAAGTTAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.17, C:0.09, G:0.17, T:0.57
Consensus pattern (28 bp):
ACGTATCTGAGTTTGAACTTTTTTTTTT
Found at i:94318265 original size:19 final size:16
Alignment explanation
Indices: 94318241--94318291 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 16
94318231 TACTTTAATA
94318241 TAACTATTAAAATAATGTT
1 TAACTA-TAAAA-AAT-TT
94318260 TAACTATAAAAAATTT
1 TAACTATAAAAAATTT
94318276 TAA-TAAATAAAAAATT
1 TAACT--ATAAAAAATT
94318292 AAAATAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.03
16 5 0.17
17 13 0.43
18 5 0.17
19 6 0.20
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (16 bp):
TAACTATAAAAAATTT
Found at i:94318297 original size:17 final size:18
Alignment explanation
Indices: 94318264--94318303 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
94318254 AATGTTTAAC
**
94318264 TATAAAAAATTTTAATAA
1 TATAAAAAATTAAAATAA
94318282 -ATAAAAAATTAAAATAA
1 TATAAAAAATTAAAATAA
94318299 TATAA
1 TATAA
94318304 TATAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TATAAAAAATTAAAATAA
Found at i:94318325 original size:41 final size:42
Alignment explanation
Indices: 94318246--94318326 Score: 112
Period size: 41 Copynumber: 1.9 Consensus size: 42
94318236 TAATATAACT
* *
94318246 ATTAAAATAATGTTTAACTATAAAAAATTTTAATAAATAAAAA
1 ATTAAAATAA-GTATAACTATAAAAAATTTTAAAAAATAAAAA
94318289 ATTAAAATAA-TATAA-TATAAATAAATTTTAAAAAATAA
1 ATTAAAATAAGTATAACTATAAA-AAATTTTAAAAAATAA
94318327 TATGGGTGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 6 0.17
41 19 0.54
43 10 0.29
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (42 bp):
ATTAAAATAAGTATAACTATAAAAAATTTTAAAAAATAAAAA
Found at i:94320852 original size:20 final size:20
Alignment explanation
Indices: 94320824--94320869 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
94320814 TTTGATATTT
* *
94320824 GAAAAGAAAAAGGAAATGAA
1 GAAAGGAAAAAGGAAAGGAA
94320844 GAAAGGAAAAAGGAAAGGAA
1 GAAAGGAAAAAGGAAAGGAA
*
94320864 AAAAGG
1 GAAAGG
94320870 GACAGGGTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.02
Consensus pattern (20 bp):
GAAAGGAAAAAGGAAAGGAA
Found at i:94324778 original size:39 final size:39
Alignment explanation
Indices: 94324724--94324802 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
94324714 TGAATGGTAA
94324724 CGACAAATATGCATGGAAGGGGACAATTTTCGGATAAAT
1 CGACAAATATGCATGGAAGGGGACAATTTTCGGATAAAT
94324763 CGACAAATATGCATGGAAGGGGACAATTTTCGGATAAAT
1 CGACAAATATGCATGGAAGGGGACAATTTTCGGATAAAT
94324802 C
1 C
94324803 CGCATATGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (39 bp):
CGACAAATATGCATGGAAGGGGACAATTTTCGGATAAAT
Found at i:94325240 original size:25 final size:25
Alignment explanation
Indices: 94325212--94325259 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
94325202 ATAAATGATA
94325212 AAATTTGTTAACT-AGATTTGATTCG
1 AAATTTGTTAACTCA-ATTTGATTCG
* *
94325237 AAATTTTTTGACTCAATTTGATT
1 AAATTTGTTAACTCAATTTGATT
94325260 TAAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.48
Consensus pattern (25 bp):
AAATTTGTTAACTCAATTTGATTCG
Found at i:94327801 original size:15 final size:16
Alignment explanation
Indices: 94327766--94327804 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
94327756 CAATTAATTT
*
94327766 TTTAAATATAAAAAAA
1 TTTAAAAATAAAAAAA
*
94327782 TTTAAAAATAAAAATA
1 TTTAAAAATAAAAAAA
94327798 -TTAAAAA
1 TTTAAAAA
94327805 GTATTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TTTAAAAATAAAAAAA
Found at i:94327804 original size:10 final size:9
Alignment explanation
Indices: 94327769--94327818 Score: 52
Period size: 9 Copynumber: 5.8 Consensus size: 9
94327759 TTAATTTTTT
94327769 AAATA-TAA
1 AAATATTAA
* *
94327777 AAAAATTTA
1 AAATATTAA
94327786 AAA-A-TAA
1 AAATATTAA
94327793 AAATATTAA
1 AAATATTAA
94327802 AAAGTATTAA
1 AAA-TATTAA
94327812 AAATATT
1 AAATATT
94327819 TTTTTAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
7 5 0.14
8 6 0.17
9 15 0.43
10 9 0.26
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (9 bp):
AAATATTAA
Found at i:94327811 original size:25 final size:24
Alignment explanation
Indices: 94327769--94327816 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
94327759 TTAATTTTTT
94327769 AAATATAAAAAAATTTAAAAATAA
1 AAATATAAAAAAATTTAAAAATAA
* *
94327793 AAATATTAAAAAGTATTAAAAATA
1 AAATATAAAAAAAT-TTAAAAATA
94327817 TTTTTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (24 bp):
AAATATAAAAAAATTTAAAAATAA
Found at i:94328541 original size:54 final size:54
Alignment explanation
Indices: 94328459--94328571 Score: 217
Period size: 54 Copynumber: 2.1 Consensus size: 54
94328449 CTAACACTGT
*
94328459 TAAAATTTTTTTGTTATGCTACGAAAATATTATCAGTGTTAGAGGAAATTCACG
1 TAAAATTTTTTTGTTATGCTACAAAAATATTATCAGTGTTAGAGGAAATTCACG
94328513 TAAAATTTTTTTGTTATGCTACAAAAATATTATCAGTGTTAGAGGAAATTCACG
1 TAAAATTTTTTTGTTATGCTACAAAAATATTATCAGTGTTAGAGGAAATTCACG
94328567 TAAAA
1 TAAAA
94328572 AAAATAGGTA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (54 bp):
TAAAATTTTTTTGTTATGCTACAAAAATATTATCAGTGTTAGAGGAAATTCACG
Found at i:94329018 original size:2 final size:2
Alignment explanation
Indices: 94329011--94329036 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
94329001 ATATTAAGCC
94329011 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
94329037 TTACAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94329757 original size:9 final size:9
Alignment explanation
Indices: 94329754--94329849 Score: 63
Period size: 9 Copynumber: 10.4 Consensus size: 9
94329744 GAAAATTAGA
*
94329754 AAAAAATAT
1 AAAAATTAT
94329763 AAAAATTAT
1 AAAAATTAT
94329772 AAAAA--AT
1 AAAAATTAT
*
94329779 AAAAATTGT
1 AAAAATTAT
*
94329788 AAAATTTTAT
1 AAAA-ATTAT
*
94329798 AAAAATTGT
1 AAAAATTAT
94329807 AAAAAATTA-
1 -AAAAATTAT
*
94329816 AAAAATATGT
1 AAAAAT-TAT
* *
94329826 AGAAATATAAA
1 A-AAA-ATTAT
94329837 AAAAATTAT
1 AAAAATTAT
94329846 AAAA
1 AAAA
94329850 TTTTATAAAG
Statistics
Matches: 66, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
7 7 0.11
8 6 0.09
9 29 0.44
10 18 0.27
11 4 0.06
12 2 0.03
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:94329784 original size:35 final size:36
Alignment explanation
Indices: 94329729--94329881 Score: 98
Period size: 35 Copynumber: 4.2 Consensus size: 36
94329719 AATTTTATTA
* *
94329729 AAAAATT-T-AAATATTGAAAATTAG-AAAAAAATAT
1 AAAAATTATAAAAAATTAAAAATT-GTAAAAAAATAT
***
94329763 AAAAATTATAAAAAA-TAAAAATTGTAAAATTTTAT
1 AAAAATTATAAAAAATTAAAAATTGTAAAAAAATAT
* * * *
94329798 AAAAATTGTAAAAAATTAAAAAATATGTAGAAATATAAA
1 AAAAATTATAAAAAATT-AAAAAT-TGTAAAAAAAT-AT
** * *
94329837 AAAAATTATAAAATTTTATAAAGTTGTAAGAAAACTAT
1 AAAAATTATAAAAAATTA-AAAATTGTAA-AAAAATAT
94329875 ACAAAAT
1 A-AAAAT
94329882 GTAAAGAAAT
Statistics
Matches: 91, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
34 8 0.09
35 29 0.32
36 5 0.05
37 6 0.07
38 15 0.16
39 28 0.31
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (36 bp):
AAAAATTATAAAAAATTAAAAATTGTAAAAAAATAT
Found at i:94329801 original size:19 final size:19
Alignment explanation
Indices: 94329760--94329858 Score: 89
Period size: 19 Copynumber: 5.3 Consensus size: 19
94329750 TAGAAAAAAA
*
94329760 TATAAAAATTATAAAA-A-
1 TATAAAAATTGTAAAATAT
*
94329777 -ATAAAAATTGTAAAATTT
1 TATAAAAATTGTAAAATAT
*
94329795 TATAAAAATTGTAAAAAAT
1 TATAAAAATTGTAAAATAT
94329814 TA-AAAAATATGTAGAAATAT
1 TATAAAAAT-TGTA-AAATAT
* * * *
94329834 AAAAAAAATTATAAAATTT
1 TATAAAAATTGTAAAATAT
94329853 TATAAA
1 TATAAA
94329859 GTTGTAAGAA
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
16 14 0.21
18 6 0.09
19 31 0.47
20 9 0.14
21 6 0.09
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (19 bp):
TATAAAAATTGTAAAATAT
Found at i:94329870 original size:29 final size:27
Alignment explanation
Indices: 94329779--94329875 Score: 77
Period size: 29 Copynumber: 3.4 Consensus size: 27
94329769 TATAAAAAAT
*
94329779 AAAAATTGTAAAATTTTATAAAAATTGTA
1 AAAAATTATAAAATTTTAT--AAATTGTA
* * * **
94329808 AAAAATTAAAAAATATGTAGAAATATAAA
1 AAAAATTATAAAAT-TTTATAAAT-TGTA
94329837 AAAAATTATAAAATTTTATAAAGTTGTA
1 AAAAATTATAAAATTTTATAAA-TTGTA
*
94329865 AGAAAACTATA
1 A-AAAATTATA
94329876 CAAAATGTAA
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
28 13 0.25
29 36 0.69
30 3 0.06
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAAATTATAAAATTTTATAAATTGTA
Found at i:94329884 original size:58 final size:59
Alignment explanation
Indices: 94329779--94329896 Score: 152
Period size: 58 Copynumber: 2.0 Consensus size: 59
94329769 TATAAAAAAT
* *
94329779 AAAAATTGTAAAATTTTATAAAAATTGTAAAAAATTAAAAAATATGT-AGAAATATAAA
1 AAAAATTATAAAATTTTATAAAAATTGTAAAAAACTAAAAAATATGTAAGAAATATAAA
* *
94329837 AAAAATTATAAAATTTTAT-AAAGTTGTAAGAAAACTATACAAA-ATGTAAAGAAATATAAA
1 AAAAATTATAAAATTTTATAAAAATTGTAA-AAAACTA-AAAAATATGT-AAGAAATATAAA
94329897 TTTCATAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
57 9 0.17
58 28 0.54
59 4 0.08
60 11 0.21
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.30
Consensus pattern (59 bp):
AAAAATTATAAAATTTTATAAAAATTGTAAAAAACTAAAAAATATGTAAGAAATATAAA
Found at i:94330128 original size:37 final size:37
Alignment explanation
Indices: 94330052--94330136 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 37
94330042 CTAGGGGTTG
* * *
94330052 TTATTTTTTTATGATTTTTATAAAATTTTACAAAATT
1 TTATTTTTTTACGATGTTTATAAAAATTTACAAAATT
* *
94330089 TTATTTTTTTACGATGTTTATAAAAAATTT-CTAATTT
1 TTATTTTTTTACGATGTTTAT-AAAAATTTACAAAATT
*
94330126 TTATATTTTTA
1 TTATTTTTTTA
94330137 TTAAAATTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
37 34 0.83
38 7 0.17
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (37 bp):
TTATTTTTTTACGATGTTTATAAAAATTTACAAAATT
Found at i:94330144 original size:20 final size:20
Alignment explanation
Indices: 94330121--94330169 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
94330111 AAAAATTTCT
*
94330121 AATTT-TTATATTTTTATTAA
1 AATTTATTATAGTTTTA-TAA
94330141 AATTTATTA-AGTTTTATAA
1 AATTTATTATAGTTTTATAA
94330160 AATTTATTAT
1 AATTTATTAT
94330170 TTATTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 12 0.46
20 11 0.42
21 3 0.12
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
AATTTATTATAGTTTTATAA
Found at i:94330176 original size:19 final size:18
Alignment explanation
Indices: 94330125--94330176 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
94330115 ATTTCTAATT
94330125 TTTA-TATTTTTATTAAAA
1 TTTATTATTTTTA-TAAAA
*
94330143 TTTATTAAGTTTTATAAAA
1 TTTATT-ATTTTTATAAAA
94330162 TTTATTATTTATTAT
1 TTTATTATTT-TTAT
94330177 TTTTTCTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 7 0.24
19 16 0.55
20 6 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTATTATTTTTATAAAA
Done.