Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 318 of 328
Found at i:94330350 original size:91 final size:93
Alignment explanation
Indices: 94330215--94330405 Score: 262
Period size: 91 Copynumber: 2.1 Consensus size: 93
94330205 CTTAATTGCC
* *
94330215 TTTTTGAAAAATTTTAAGGGTCTTTTTTATACATTTTGAAAGTTCAAGTACCCAATTGAGTG-AA
1 TTTTTGAAAAAGTTTAAGGGTCTTTTTTATACATTTTGAAAGTTCAAGTACCCAATTAAGTGAAA
*
94330279 AAAAATTAGGGGCTTAAGTG-TTTTTTT
66 AAAAATGAGGGGCTTAAGTGCTTTTTTT
* * **
94330306 TTTTTGAAGAAGTTTGAGGG-CTTTTTTGATACATTTTGAAAGTTCAAGTATTCAATTAAGTGCA
1 TTTTTGAAAAAGTTTAAGGGTCTTTTTT-ATACATTTTGAAAGTTCAAGTACCCAATTAAGTG-A
*
94330370 AAAAAAATGAGGGGCTTAATTGCCTTTTTTT
64 AAAAAAATGAGGGGCTTAAGTG-CTTTTTTT
94330401 TTTTT
1 TTTTT
94330406 AAGTTTGAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
90 7 0.08
91 48 0.55
93 20 0.23
95 12 0.14
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.43
Consensus pattern (93 bp):
TTTTTGAAAAAGTTTAAGGGTCTTTTTTATACATTTTGAAAGTTCAAGTACCCAATTAAGTGAAA
AAAAATGAGGGGCTTAAGTGCTTTTTTT
Found at i:94331574 original size:2 final size:2
Alignment explanation
Indices: 94331567--94331605 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
94331557 CATAGCTTGA
*
94331567 AT AT AT AT -T TT AT AT AT GAT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT A
94331606 CTCTGTTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
1 1 0.03
2 31 0.91
3 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:94349307 original size:44 final size:45
Alignment explanation
Indices: 94349217--94349345 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
94349207 GACAGAACGA
*
94349217 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
94349263 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
94349307 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
94349346 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:94356688 original size:44 final size:45
Alignment explanation
Indices: 94356598--94356726 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
94356588 GACAGAACGA
*
94356598 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
94356644 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
94356688 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
94356727 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:94364258 original size:19 final size:20
Alignment explanation
Indices: 94364214--94364258 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
94364204 GTGAAATGAT
*
94364214 AGTAAAATAGTGAAAAAACA
1 AGTAAAATAGTCAAAAAACA
94364234 AG-AAAATAG-CAACAAAAC-
1 AGTAAAATAGTCAA-AAAACA
94364252 AGTAAAA
1 AGTAAAA
94364259 AACAAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 2 0.09
ACGTcount: A:0.67, C:0.09, G:0.13, T:0.11
Consensus pattern (20 bp):
AGTAAAATAGTCAAAAAACA
Found at i:94372586 original size:34 final size:34
Alignment explanation
Indices: 94372545--94372622 Score: 94
Period size: 32 Copynumber: 2.4 Consensus size: 34
94372535 AAGTTCACCC
94372545 ATATTATTTTTTAATATTTTAA-AAAAATTATATT
1 ATATTATTTTTTAATA-TTTAATAAAAATTATATT
*
94372579 ATATTA--TTTTAATATTTAATAAAATTTATATT
1 ATATTATTTTTTAATATTTAATAAAAATTATATT
94372611 -T-TTATTTATTTA
1 ATATTATTT-TTTA
94372623 TTAGAAGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
30 3 0.08
31 6 0.15
32 20 0.51
33 4 0.10
34 6 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (34 bp):
ATATTATTTTTTAATATTTAATAAAAATTATATT
Found at i:94377509 original size:16 final size:16
Alignment explanation
Indices: 94377488--94377518 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94377478 GTATCATGAA
*
94377488 TCAATTGAATATTAAT
1 TCAATTGAAAATTAAT
94377504 TCAATTGAAAATTAA
1 TCAATTGAAAATTAA
94377519 CTAAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (16 bp):
TCAATTGAAAATTAAT
Found at i:94380008 original size:2 final size:2
Alignment explanation
Indices: 94379997--94380028 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
94379987 TTTGTTTTAT
94379997 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
94380029 GCAGATGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:94381290 original size:50 final size:48
Alignment explanation
Indices: 94381205--94381308 Score: 190
Period size: 50 Copynumber: 2.1 Consensus size: 48
94381195 ATATATTACT
94381205 TGTTCATTTTTCCCCAAGAACTTCTGATTTTAGCATCGGTGCCCATTG
1 TGTTCATTTTTCCCCAAGAACTTCTGATTTTAGCATCGGTGCCCATTG
94381253 TGTTCATTTTTCCCCAAGTCAACTTCTGATTTTAGCATCGGTGCCCATTG
1 TGTTCATTTTTCCCCAAG--AACTTCTGATTTTAGCATCGGTGCCCATTG
94381303 TGTTCA
1 TGTTCA
94381309 GAAAGGACAA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
48 18 0.33
50 36 0.67
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.40
Consensus pattern (48 bp):
TGTTCATTTTTCCCCAAGAACTTCTGATTTTAGCATCGGTGCCCATTG
Found at i:94389039 original size:26 final size:24
Alignment explanation
Indices: 94389009--94389058 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
94388999 AAATAAAAAA
*
94389009 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
94389035 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
94389059 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:94389078 original size:21 final size:21
Alignment explanation
Indices: 94389029--94389087 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
94389019 ATAATAAATC
*
94389029 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
94389049 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
* *
94389071 AAATAATACTCAAACAA
1 AAATAATATTAAAACAA
94389088 TTCTTAAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 3 0.10
21 17 0.55
22 11 0.35
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:94389164 original size:15 final size:16
Alignment explanation
Indices: 94389134--94389166 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
94389124 AAATGGTTAT
94389134 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
94389151 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
94389166 A
1 A
94389167 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:94391214 original size:29 final size:29
Alignment explanation
Indices: 94391141--94391207 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
94391131 ATATATATTA
* *
94391141 TAAAAAAATTTAATT-TTTAAAATAATTTT
1 TAAAAAAA-TTAATTAATCAAAATAATTTT
* *
94391170 TATAAAAATTAATTAATCAAAATATTTTT
1 TAAAAAAATTAATTAATCAAAATAATTTT
94391199 TAAAAAAAT
1 TAAAAAAAT
94391208 ATATTAACTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (29 bp):
TAAAAAAATTAATTAATCAAAATAATTTT
Found at i:94391809 original size:13 final size:13
Alignment explanation
Indices: 94391791--94391816 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
94391781 TCCTTCACTA
94391791 TATATATTGAAAC
1 TATATATTGAAAC
94391804 TATATATTGAAAC
1 TATATATTGAAAC
94391817 CCTTTTCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
TATATATTGAAAC
Found at i:94398955 original size:38 final size:38
Alignment explanation
Indices: 94398904--94398980 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
94398894 TTGGAAGGTA
*
94398904 TTGCTAACCTTTTATTAGGTGTGGCTCATTTGACACAT
1 TTGCTAACCTTTTATTAGGTGTGGCTCATTCGACACAT
94398942 TTGCTAACCTTTTATTAGGTGTGGCTCATTCGACACAT
1 TTGCTAACCTTTTATTAGGTGTGGCTCATTCGACACAT
94398980 T
1 T
94398981 CAAAGTCAGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (38 bp):
TTGCTAACCTTTTATTAGGTGTGGCTCATTCGACACAT
Found at i:94400869 original size:21 final size:21
Alignment explanation
Indices: 94400838--94400886 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
94400828 AATTATGATT
94400838 TTAATATATTAAAATTTATAAA
1 TTAATATATTAAAATTTA-AAA
*
94400860 TTAA-ATATTAATATTTAAAA
1 TTAATATATTAAAATTTAAAA
94400880 TT-ATATA
1 TTAATATA
94400887 GAAACTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 1 0.04
20 8 0.32
21 12 0.48
22 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATATATTAAAATTTAAAA
Found at i:94401073 original size:61 final size:61
Alignment explanation
Indices: 94400978--94401099 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
94400968 ACTTGGAGTC
94400978 ATCTTTCAGATTTGATGAAGTAGAACACTACGATAATTAATTTCTCTTGACCTTTTTCCTT
1 ATCTTTCAGATTTGATGAAGTAGAACACTACGATAATTAATTTCTCTTGACCTTTTTCCTT
*
94401039 ATCTTTCGGATTTGATGAAGTAGAACACTACGATAATTAATTTCTCTTGACCTTTTTCCTT
1 ATCTTTCAGATTTGATGAAGTAGAACACTACGATAATTAATTTCTCTTGACCTTTTTCCTT
94401100 TTGTTACACA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (61 bp):
ATCTTTCAGATTTGATGAAGTAGAACACTACGATAATTAATTTCTCTTGACCTTTTTCCTT
Found at i:94401719 original size:26 final size:27
Alignment explanation
Indices: 94401673--94401724 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 27
94401663 AATTAATTTG
*
94401673 TAAAATATATAATTATAAATG-TTTAT
1 TAAAATATATAATTAAAAATGATTTAT
*
94401699 TAAAA-ATCTAATTAAACAATGATTTA
1 TAAAATATATAATTAAA-AATGATTTA
94401725 ATCACTCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 9 0.41
26 9 0.41
27 4 0.18
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (27 bp):
TAAAATATATAATTAAAAATGATTTAT
Found at i:94409997 original size:18 final size:18
Alignment explanation
Indices: 94409957--94409999 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
94409947 AGTTTAAGTG
94409957 TAATTAATTTAAAATTTT
1 TAATTAATTTAAAATTTT
* *
94409975 CAATTAA-TTAAATTTATT
1 TAATTAATTTAAAATT-TT
94409993 TAATTAA
1 TAATTAA
94410000 AAATCTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTAATTTAAAATTTT
Found at i:94412142 original size:18 final size:18
Alignment explanation
Indices: 94412102--94412140 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
94412092 ACCTTAAAAA
* *
94412102 AAACTTAAATAAAACCTC
1 AAACTTAAACAAAAACTC
94412120 AAACTTAAACACAAAACTC
1 AAACTTAAACA-AAAACTC
94412139 AA
1 AA
94412141 CTACGACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.59, C:0.23, G:0.00, T:0.18
Consensus pattern (18 bp):
AAACTTAAACAAAAACTC
Found at i:94414781 original size:19 final size:20
Alignment explanation
Indices: 94414759--94414803 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
94414749 AGATGATAAA
94414759 AGTA-GAAAATGTGAAAAGT
1 AGTATGAAAATGTGAAAAGT
**
94414778 AGTATGTTAATGTGAAAAGT
1 AGTATGAAAATGTGAAAAGT
*
94414798 GGTATG
1 AGTATG
94414804 TTTTTCTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (20 bp):
AGTATGAAAATGTGAAAAGT
Found at i:94414791 original size:20 final size:20
Alignment explanation
Indices: 94414766--94414805 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
94414756 AAAAGTAGAA
94414766 AATGTGAAAAGTAGTATGTT
1 AATGTGAAAAGTAGTATGTT
*
94414786 AATGTGAAAAGTGGTATGTT
1 AATGTGAAAAGTAGTATGTT
94414806 TTTCTTAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.35
Consensus pattern (20 bp):
AATGTGAAAAGTAGTATGTT
Found at i:94427660 original size:16 final size:16
Alignment explanation
Indices: 94427639--94427680 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
94427629 GCTTATTATT
94427639 TAAGAA-ATAATAATTA
1 TAAGAATATAATAA-TA
*
94427655 TAAGAATTTAATAATA
1 TAAGAATATAATAATA
*
94427671 TAATAATATA
1 TAAGAATATA
94427681 TATGTTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (16 bp):
TAAGAATATAATAATA
Found at i:94430377 original size:12 final size:12
Alignment explanation
Indices: 94430362--94430392 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
94430352 TTCTCTTTTA
94430362 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
94430374 TTTTTCTTTCTC
1 TTTTTCTTTCCC
94430386 TTTTTCT
1 TTTTTCT
94430393 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:94430493 original size:16 final size:16
Alignment explanation
Indices: 94430472--94430502 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94430462 TTTATTATTT
94430472 TATTAACATAATATAA
1 TATTAACATAATATAA
*
94430488 TATTAATATAATATA
1 TATTAACATAATATA
94430503 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:94434556 original size:29 final size:29
Alignment explanation
Indices: 94434523--94434581 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
94434513 AGGAAGAAAG
94434523 TCTGTTTTTGCTTCACTTTCCTAACTTTT
1 TCTGTTTTTGCTTCACTTTCCTAACTTTT
94434552 TCTGTTTTTGCTTCACTTTCCTAACTTTT
1 TCTGTTTTTGCTTCACTTTCCTAACTTTT
94434581 T
1 T
94434582 TCCTTGGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.10, C:0.24, G:0.07, T:0.59
Consensus pattern (29 bp):
TCTGTTTTTGCTTCACTTTCCTAACTTTT
Found at i:94434655 original size:15 final size:15
Alignment explanation
Indices: 94434618--94434670 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
94434608 TCTTATCTTG
* *
94434618 AAACCCTAAACCAT-
1 AAACCTTAAACCCTA
*
94434632 AAACTTTAAACCCTA
1 AAACCTTAAACCCTA
*
94434647 AAACCTTAAACCCAA
1 AAACCTTAAACCCTA
*
94434662 AAACTTTAA
1 AAACCTTAA
94434671 TAATAAAATC
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 11 0.34
15 21 0.66
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
AAACCTTAAACCCTA
Found at i:94440138 original size:42 final size:42
Alignment explanation
Indices: 94440069--94440173 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 42
94440059 TGTTAAGTTC
* * *
94440069 CACTTTGCGTGTTTCTTTAAAAACATGAGCTTTTGTGAGCCT
1 CACTCTGCGTGCTCCTTTAAAAACATGAGCTTTTGTGAGCCT
* *
94440111 CACTCTGCGTGCTCCTTTGAAAGCATGAGCTTTTGTGAGCCT
1 CACTCTGCGTGCTCCTTTAAAAACATGAGCTTTTGTGAGCCT
* **
94440153 CATTCTGCACGCTCC-TTAAAA
1 CACTCTGCGTGCTCCTTTAAAA
94440174 GTATGGGTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 5 0.09
42 49 0.91
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (42 bp):
CACTCTGCGTGCTCCTTTAAAAACATGAGCTTTTGTGAGCCT
Found at i:94441790 original size:40 final size:40
Alignment explanation
Indices: 94441734--94441813 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
94441724 AATTCATAAT
94441734 AAGCTTCAGAAATTATCCAAAATCATCTACCTCATCTTCA
1 AAGCTTCAGAAATTATCCAAAATCATCTACCTCATCTTCA
* *
94441774 AAGCTTCAGAACTTATCCAAAATCATTTACCTCATCTTCA
1 AAGCTTCAGAAATTATCCAAAATCATCTACCTCATCTTCA
94441814 TCTTGCTTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.36, C:0.28, G:0.05, T:0.31
Consensus pattern (40 bp):
AAGCTTCAGAAATTATCCAAAATCATCTACCTCATCTTCA
Found at i:94447268 original size:21 final size:20
Alignment explanation
Indices: 94447240--94447278 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
94447230 ACACATGGTG
94447240 TATAGGCTGAAAAAAAGCCT
1 TATAGGCTGAAAAAAAGCCT
* *
94447260 TATATGGCTTAAAATAAGC
1 TATA-GGCTGAAAAAAAGC
94447279 ACTTCGAGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.26
Consensus pattern (20 bp):
TATAGGCTGAAAAAAAGCCT
Found at i:94449876 original size:20 final size:20
Alignment explanation
Indices: 94449851--94449891 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
94449841 ACACTCTAAA
94449851 ATGAGTTCAAATGTTGACAT
1 ATGAGTTCAAATGTTGACAT
94449871 ATGAGTTCAAATGTTGACAT
1 ATGAGTTCAAATGTTGACAT
94449891 A
1 A
94449892 CATGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ATGAGTTCAAATGTTGACAT
Found at i:94450102 original size:103 final size:103
Alignment explanation
Indices: 94449985--94450178 Score: 289
Period size: 103 Copynumber: 1.9 Consensus size: 103
94449975 AAGCAGCAAC
* * * * *
94449985 AATACAAGCTAAGCAGCAGTAAAAGTAAGTTGCCTTTAAGGTCCAAAAACCAATGCCTACCTATG
1 AATACAAACTAAGCAGCAGTAAAAGCAAGTTGCCTTTAAAGTCCAAAAAACAATGCCTACCGATG
94450050 TATGCTTATAAAAGCAAGCAGGAGCAACAATTGTAACT
66 TATGCTTATAAAAGCAAGCAGGAGCAACAATTGTAACT
* * *
94450088 AATACAAACTAAGCAGCAGTTAAAGCAAGTTGCCTTTAAAGTTCAAAAAACAATGCCTGCCGATG
1 AATACAAACTAAGCAGCAGTAAAAGCAAGTTGCCTTTAAAGTCCAAAAAACAATGCCTACCGATG
* * *
94450153 TATGCTTTTAGAAGCAAGCAGTAGCA
66 TATGCTTATAAAAGCAAGCAGGAGCA
94450179 GAAAGAACAA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
103 80 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (103 bp):
AATACAAACTAAGCAGCAGTAAAAGCAAGTTGCCTTTAAAGTCCAAAAAACAATGCCTACCGATG
TATGCTTATAAAAGCAAGCAGGAGCAACAATTGTAACT
Found at i:94456900 original size:10 final size:9
Alignment explanation
Indices: 94456874--94456904 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
94456864 TTGTGTGTTC
94456874 TTTATTTTA
1 TTTATTTTA
94456883 TTTATTTTA
1 TTTATTTTA
94456892 TTCTATTTTA
1 TT-TATTTTA
94456902 TTT
1 TTT
94456905 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:94461355 original size:10 final size:9
Alignment explanation
Indices: 94461329--94461363 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
94461319 TTATGTGTTC
94461329 TTTATTTTA
1 TTTATTTTA
94461338 TTTATTTTA
1 TTTATTTTA
94461347 TTCTATTTTA
1 TT-TATTTTA
94461357 TTT-TTTT
1 TTTATTTT
94461364 TTCACAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 4 0.16
9 12 0.48
10 9 0.36
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTTA
Found at i:94464087 original size:27 final size:27
Alignment explanation
Indices: 94464049--94464137 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 27
94464039 TTTTCTTCAT
*
94464049 GTTTTTGAATAACATAAAGAACTATGA
1 GTTTTTGAATAACATAAAGGACTATGA
94464076 GTTTTTGAATAACATAAAATTAAGGACTATG-
1 GTTTTTGAATAACAT---A--AAGGACTATGA
94464107 GTTTTTGAATAAC--AAAGGACTATGA
1 GTTTTTGAATAACATAAAGGACTATGA
94464132 GTTTTT
1 GTTTTT
94464138 ATTTTGTTAT
Statistics
Matches: 55, Mismatches: 1, Indels: 14
0.79 0.01 0.20
Matches are distributed among these distances:
24 10 0.18
25 6 0.11
26 1 0.02
27 15 0.27
30 1 0.02
31 13 0.24
32 9 0.16
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (27 bp):
GTTTTTGAATAACATAAAGGACTATGA
Found at i:94464507 original size:13 final size:12
Alignment explanation
Indices: 94464484--94464546 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
94464474 AATAATTTTA
94464484 TATTAAAATTAT
1 TATTAAAATTAT
94464496 TATT-AAA-TAT
1 TATTAAAATTAT
94464506 TATTAATAATTA-
1 TATTAA-AATTAT
*
94464518 TATTAAGAA-TGT
1 TATTAA-AATTAT
94464530 TATT-AAATTAT
1 TATTAAAATTAT
94464541 ATATTA
1 -TATTA
94464547 TTTTATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 22 0.54
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:94464511 original size:22 final size:23
Alignment explanation
Indices: 94464484--94464546 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
94464474 AATAATTTTA
94464484 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
94464506 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
94464530 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
94464547 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:94464660 original size:25 final size:26
Alignment explanation
Indices: 94464610--94464660 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
94464600 ATTTTTATTT
*
94464610 TTATTAAAATATATTGAACAATAATC
1 TTATTAAAATATAATGAACAATAATC
*
94464636 TTATTAAAATTTAAT-AACAATAATC
1 TTATTAAAATATAATGAACAATAATC
94464661 ATCTATCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (26 bp):
TTATTAAAATATAATGAACAATAATC
Found at i:94464784 original size:44 final size:45
Alignment explanation
Indices: 94464733--94464821 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 45
94464723 TACAACATCT
94464733 ATTCCATTCAACTAAACACAA-GAATT-CT-ATTACAGCTCTATTCA
1 ATTCCATTCAAC-AAAC-CAATGAATTACTGATTACAGCTCTATTCA
*
94464777 ATTCCATTCAACCAACCAATTGAATTACTGATTACAGCTCTATTC
1 ATTCCATTCAACAAACCAA-TGAATTACTGATTACAGCTCTATTC
94464822 CATTACAACT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 3 0.08
43 3 0.08
44 17 0.43
45 2 0.05
46 15 0.38
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.33
Consensus pattern (45 bp):
ATTCCATTCAACAAACCAATGAATTACTGATTACAGCTCTATTCA
Found at i:94464828 original size:16 final size:16
Alignment explanation
Indices: 94464807--94464861 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
94464797 TGAATTACTG
94464807 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
94464823 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCC
94464839 ATTACAGC-CTTATTCC
1 ATTACAGCTC-TATTCC
94464855 ATTACAG
1 ATTACAG
94464862 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 1 0.03
16 33 0.97
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:94467577 original size:39 final size:39
Alignment explanation
Indices: 94467503--94467579 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
94467493 AATTGGTTAA
* * *
94467503 TAAATCATATTTTATAAATAATGGATAGTATTTTTTTAT
1 TAAAACATATTTTATAAATAATGGATAGCAATTTTTTAT
*
94467542 TAAAACATATTTTATAATTAATGGAT-GCCAATTTTTTA
1 TAAAACATATTTTATAAATAATGGATAG-CAATTTTTTA
94467580 GTTTTTTTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (39 bp):
TAAAACATATTTTATAAATAATGGATAGCAATTTTTTAT
Found at i:94468408 original size:27 final size:27
Alignment explanation
Indices: 94468378--94468437 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
94468368 AGAAGGAGGA
*
94468378 AAAAATAG-AAAAGAAAATAAAAGAGAT
1 AAAAA-AGTAAAAGAAAATAAAAGAAAT
*
94468405 AAAAAAGTAAAAGAAAATAAAATAAAT
1 AAAAAAGTAAAAGAAAATAAAAGAAAT
94468432 AAAAAA
1 AAAAAA
94468438 TATATTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (27 bp):
AAAAAAGTAAAAGAAAATAAAAGAAAT
Found at i:94473820 original size:22 final size:21
Alignment explanation
Indices: 94473794--94473835 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
94473784 AATATTACTA
94473794 AAAAAAATCTGAGTTAAAAAT
1 AAAAAAATCTGAGTTAAAAAT
94473815 AAAAAAATCTGAGTTAAAAAT
1 AAAAAAATCTGAGTTAAAAAT
94473836 CTATATGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
AAAAAAATCTGAGTTAAAAAT
Found at i:94474275 original size:8 final size:8
Alignment explanation
Indices: 94474259--94474328 Score: 52
Period size: 8 Copynumber: 8.6 Consensus size: 8
94474249 TATTTTAGAA
*
94474259 AAAAATTT
1 AAAATTTT
94474267 AAAATTTT
1 AAAATTTT
*
94474275 AAAATTAT
1 AAAATTTT
***
94474283 ACTTTTTT
1 AAAATTTT
94474291 AAAATTTTT
1 AAAA-TTTT
*
94474300 AAAA-TAT
1 AAAATTTT
*
94474307 AAAATTTG
1 AAAATTTT
94474315 AAAATTTT
1 AAAATTTT
94474323 ATAAAT
1 A-AAAT
94474329 ATTTTTAATT
Statistics
Matches: 46, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
7 6 0.13
8 28 0.61
9 12 0.26
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (8 bp):
AAAATTTT
Found at i:94474328 original size:24 final size:23
Alignment explanation
Indices: 94474260--94474330 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
94474250 ATTTTAGAAA
94474260 AAAATTTAAAATTTTA-AAATTAT
1 AAAATTTAAAATTTTATAAA-TAT
***
94474283 ACTTTTTTAAAATTTT-TAAAATAT
1 A-AAATTTAAAATTTTAT-AAATAT
94474307 AAAATTTGAAAATTTTATAAATAT
1 AAAATTT-AAAATTTTATAAATAT
94474331 TTTTAATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
23 4 0.11
24 29 0.78
25 4 0.11
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (23 bp):
AAAATTTAAAATTTTATAAATAT
Found at i:94478126 original size:25 final size:25
Alignment explanation
Indices: 94478052--94478117 Score: 123
Period size: 25 Copynumber: 2.6 Consensus size: 25
94478042 CATATATATT
*
94478052 CGCACACATAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
94478077 CGCACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
94478102 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
94478118 AGTCATTTCG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (25 bp):
CGCACACTTAGTGCCATACAATTTC
Found at i:94478305 original size:8 final size:8
Alignment explanation
Indices: 94478294--94478323 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
94478284 CCAAAATTTC
94478294 AAAAAA-A
1 AAAAAATA
94478301 AAAAAATA
1 AAAAAATA
94478309 AAAAAATA
1 AAAAAATA
94478317 AAAAAAT
1 AAAAAAT
94478324 TTCAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:94478633 original size:18 final size:17
Alignment explanation
Indices: 94478610--94478649 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
94478600 TCAAGAGAGC
*
94478610 AAAAAAATTTCCAGCAA
1 AAAAAAAATTCCAGCAA
94478627 AAAAAAAATTCCAGCAA
1 AAAAAAAATTCCAGCAA
94478644 AAAAAA
1 AAAAAA
94478650 GAATAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.68, C:0.15, G:0.05, T:0.12
Consensus pattern (17 bp):
AAAAAAAATTCCAGCAA
Found at i:94479442 original size:3 final size:3
Alignment explanation
Indices: 94479434--94479464 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
94479424 TGTATTTTAA
94479434 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
94479465 GTACATTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:94479571 original size:3 final size:3
Alignment explanation
Indices: 94479563--94479599 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
94479553 TGTATTTCAA
94479563 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
94479600 GTACATTAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:94479619 original size:135 final size:135
Alignment explanation
Indices: 94479434--94479793 Score: 648
Period size: 135 Copynumber: 2.6 Consensus size: 135
94479424 TGTATTTTAA
94479434 TATTATTATTATTATTATTATTATTATTATTGTACATTAGTGTATATCTTCATGTATGTATATAT
1 TATTATTATTATTATTATTATTATTATTATTGTACATTAGTGTATATCTTCATGTATGTATATAT
94479499 ATATGTAGTAATGTTTTTATTACTTTATTTTAATATTTTTATTATAATAGCTTTTGTATTTCAAT
66 ATATGTAGTAATGTTTTTATTACTTTATTTTAATATTTTTATTATAATAGCTTTTGTATTTCAAT
94479564 ATTAT
131 ATTAT
*
94479569 TATTATTATTATTATTATTATTATTATTATTGTACATTAGTGTATATCTTCATGTATGTACATAT
1 TATTATTATTATTATTATTATTATTATTATTGTACATTAGTGTATATCTTCATGTATGTATATAT
94479634 ATATGTAGTAATGTTTTTATTACTTTATTTTAATATTTTTATTATAATAGCTTTTGTATTTCAAT
66 ATATGTAGTAATGTTTTTATTACTTTATTTTAATATTTTTATTATAATAGCTTTTGTATTTCAAT
94479699 ATTAT
131 ATTAT
* * *
94479704 TATTATTATTATTATTATTATTATTATATTATTATTATTATTAGTGTATATCTTTATGTATGTAT
1 TATTATTATTATTATTATTATTA-T-TATTATT-GTA-CATTAGTGTATATCTTCATGTATGTAT
94479769 ATATATATGTAGTAATGTTTTTATT
62 ATATATATGTAGTAATGTTTTTATT
94479794 CCTTATTAGA
Statistics
Matches: 216, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
135 157 0.73
136 1 0.00
137 7 0.03
138 2 0.01
139 49 0.23
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (135 bp):
TATTATTATTATTATTATTATTATTATTATTGTACATTAGTGTATATCTTCATGTATGTATATAT
ATATGTAGTAATGTTTTTATTACTTTATTTTAATATTTTTATTATAATAGCTTTTGTATTTCAAT
ATTAT
Found at i:94479706 original size:3 final size:3
Alignment explanation
Indices: 94479698--94479746 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
94479688 TGTATTTCAA
94479698 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
94479745 TA
1 TA
94479747 GTGTATATCT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:94480056 original size:17 final size:15
Alignment explanation
Indices: 94480023--94480074 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
94480013 TATTATCAGT
94480023 TATATATTTCTATAC
1 TATATATTTCTATAC
94480038 TATATGATTTCTAATAC
1 TATAT-ATTTCT-ATAC
*
94480055 TAT-TATTTATATA-
1 TATATATTTCTATAC
94480068 TATATAT
1 TATATAT
94480075 ATATATTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
13 3 0.09
14 6 0.18
15 10 0.30
16 7 0.21
17 7 0.21
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (15 bp):
TATATATTTCTATAC
Found at i:94480138 original size:21 final size:21
Alignment explanation
Indices: 94480113--94480167 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
94480103 TATATCATGT
*
94480113 ATATATTTATTTTTACTCGTA
1 ATATATTTATTTTTAATCGTA
* * **
94480134 TTATATTTATTATTAATTTTA
1 ATATATTTATTTTTAATCGTA
94480155 ATATATTTATTTT
1 ATATATTTATTTT
94480168 ATCATACGTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (21 bp):
ATATATTTATTTTTAATCGTA
Found at i:94480495 original size:18 final size:17
Alignment explanation
Indices: 94480472--94480512 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
94480462 ATATTTTTGC
*
94480472 ATATTATCTTATATATAT
1 ATATTACCTTATAT-TAT
94480490 ATATTACCTTATATTAT
1 ATATTACCTTATATTAT
94480507 -TATTAC
1 ATATTAC
94480513 TAAATATACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.27
17 3 0.14
18 13 0.59
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (17 bp):
ATATTACCTTATATTAT
Found at i:94491704 original size:46 final size:45
Alignment explanation
Indices: 94491600--94491763 Score: 271
Period size: 46 Copynumber: 3.7 Consensus size: 45
94491590 ATATTATGCC
*
94491600 TAAAAAATCAAGATGAAAACCCGAAAAAGGGCATCTT--AAAAAA
1 TAAAAAATCAAGGTGAAAACCCGAAAAAGGGCATCTTAAAAAAAA
94491643 -AAAAAATCAAGGTGAAAACCCGAAAAAGGGCATCTTAAAAAAAAA
1 TAAAAAATCAAGGTGAAAACCCGAAAAAGGGCATCTT-AAAAAAAA
94491688 TAAAAAATCAAGGTGAAAACCCGAAAAAGGGCATCTTAAAAAAAA
1 TAAAAAATCAAGGTGAAAACCCGAAAAAGGGCATCTTAAAAAAAA
*
94491733 TAAAAAAATTAAGGTGAAAACCCGAAAAAGG
1 T-AAAAAATCAAGGTGAAAACCCGAAAAAGG
94491764 CGTCTTGATT
Statistics
Matches: 114, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
42 35 0.31
45 15 0.13
46 64 0.56
ACGTcount: A:0.59, C:0.13, G:0.16, T:0.13
Consensus pattern (45 bp):
TAAAAAATCAAGGTGAAAACCCGAAAAAGGGCATCTTAAAAAAAA
Found at i:94492768 original size:75 final size:72
Alignment explanation
Indices: 94492661--94493384 Score: 631
Period size: 75 Copynumber: 9.6 Consensus size: 72
94492651 TTCTACTTTC
94492661 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
94492726 TTATTCTAGT
66 TTATT-T--T
* * *
94492736 CAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTTCAAT
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
94492801 TTATGTTTT
66 TTA--TTTT
* * *
94492810 CAAAAAAATCAAACTCACATTGCGAGA---GACTTGAGCCTC-GGACACGCTGAGGTAATTTTAA
1 CAAAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
94492871 TTTCTATTTT
65 -TT-TATTTT
** *
94492881 CAAAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA-
*
94492946 TTCTGTTTT
65 TT-TATTTT
*
94492955 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATCTT-AA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT-TTCAA
94493019 TTTCTATTTT
65 -TT-TATTTT
* ** *
94493029 AAAAAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 -CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
*
94493094 TTTCTGTTTT
65 -TT-TATTTT
* * * * ** * * * *
94493104 CAAAAAAAAATAAAAATAAAAAAATCAAACCATATTGTGAGAAATGGTTTGAGCCTCAAGACACG
1 C--AAAAAAAT-CAACT---CATAT--TGCGAGA--G-GTG--A--G-TTGAGCCTCAGGACACG
* *
94493169 TTGAGGTATTTTCAATTTCTATTTT
50 CTGAGGTAATTTCAA-TT-TATTTT
* * ** *
94493194 C--AAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTTGATTCACATGCTGAGGTAATTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTAATTTCA
*
94493257 ATTTCTGTTGT
64 ATTTAT-TT-T
* * * *
94493268 CAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAAGACATGCTGAGGT-ATTGTCAA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA
94493332 TTTTTGTATGTTT
65 ---TT-TAT-TTT
*
94493345 C--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
94493385 AATCACATCC
Statistics
Matches: 545, Mismatches: 65, Indels: 78
0.79 0.09 0.11
Matches are distributed among these distances:
70 15 0.03
71 34 0.06
72 22 0.04
73 22 0.04
74 144 0.26
75 185 0.34
76 43 0.08
77 12 0.02
78 6 0.01
80 6 0.01
82 6 0.01
85 4 0.01
86 6 0.01
89 1 0.00
90 39 0.07
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (72 bp):
CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
TTATTTT
Found at i:94492947 original size:74 final size:74
Alignment explanation
Indices: 94492645--94493111 Score: 642
Period size: 75 Copynumber: 6.3 Consensus size: 74
94492635 TTCTGTTTTC
* *
94492645 TTCAATTTCTACTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTCAATTTCTA-TTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACG
94492710 CTGAGGTAAT
65 CTGAGGTAAT
* * *
94492720 TTCAA-TT-TATTCTAGTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACA
1 TTCAATTTCTATT-T--TCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACA
*
94492783 TGCTGAGGTAAT
63 CGCTGAGGTAAT
* * * *
94492795 TTCAATTTATGTTTTCAAAAAAATCAAACTCACATTGC--GAGA-GACTTGAGCCTC-GGACACG
1 TTCAATTTCTATTTTCAAAAAAATC-AACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACG
94492856 CTGAGGTAAT
65 CTGAGGTAAT
* * *
94492866 TTTAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGC
1 TTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGC
94492931 TGAGGTAAT
66 TGAGGTAAT
* * *
94492940 TTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGC
94493005 TGAGGTAAT
66 TGAGGTAAT
* * *
94493014 CTT-AATTTCTATTTTAAAAAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACAC
1 -TTCAATTTCTATTTT-CAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACAC
94493078 GCTGAGGTAAT
64 GCTGAGGTAAT
*
94493089 TTCAATTTCTGTTTTCAAAAAAA
1 TTCAATTTCTATTTTCAAAAAAA
94493112 AATAAAAATA
Statistics
Matches: 348, Mismatches: 31, Indels: 27
0.86 0.08 0.07
Matches are distributed among these distances:
70 11 0.03
71 38 0.11
72 16 0.05
73 16 0.05
74 118 0.34
75 143 0.41
76 3 0.01
77 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (74 bp):
TTCAATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGC
TGAGGTAAT
Found at i:94493184 original size:90 final size:90
Alignment explanation
Indices: 94493031--94493199 Score: 268
Period size: 90 Copynumber: 1.9 Consensus size: 90
94493021 TCTATTTTAA
*
94493031 AAAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
*
94493096 TCTGTTTTCAAAAAAAAATAAAAAT
66 TCTATTTTCAAAAAAAAATAAAAAT
* * * *
94493121 AAAAAAATCAAAC-CATATTGTGAGAAATGGTTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
1 AAAAAAATC-AACTCATATTGCGAGAAATGGGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
94493185 TTCTATTTTCAAAAA
65 TTCTATTTTCAAAAA
94493200 TCAACTCATA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
90 69 0.96
91 3 0.04
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (90 bp):
AAAAAAATCAACTCATATTGCGAGAAATGGGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
TCTATTTTCAAAAAAAAATAAAAAT
Found at i:94493301 original size:76 final size:72
Alignment explanation
Indices: 94493152--94493385 Score: 263
Period size: 74 Copynumber: 3.2 Consensus size: 72
94493142 GAGAAATGGT
* * * * * *
94493152 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAG
1 TTGAGCCTCAACACATGCTGAGGTAATTTCAATTTCTGTTGTCAAAAATCAACTCATATTGCGAG
94493217 AGGAGAG
66 AGGAGAG
* * *
94493224 TTGAGCCTTGATTCACATGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTG
1 TTGAGCC-TCA-ACACATGCTGAGGTAATTTCAATTTCTGTTGTC--AAAAATCAACTCATATTG
*
94493289 CGAGAGGCGAG
62 CGAGAGGAGAG
* *
94493300 TTGAGCCTCAAGACATGCTGAGGT-ATTGTCAATTTTTGTATGTTTCAAAAATCAACTCATATTG
1 TTGAGCCTCAACACATGCTGAGGTAATT-TCAATTTCTGT-TG--TCAAAAATCAACTCATATTG
*
94493364 CGAGAGGTGAG
62 CGAGAGGAGAG
*
94493375 TTGAACCTCAA
1 TTGAGCCTCAA
94493386 ATCACATCCC
Statistics
Matches: 137, Mismatches: 17, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
72 7 0.05
73 5 0.04
74 48 0.35
75 41 0.30
76 34 0.25
77 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (72 bp):
TTGAGCCTCAACACATGCTGAGGTAATTTCAATTTCTGTTGTCAAAAATCAACTCATATTGCGAG
AGGAGAG
Found at i:94493889 original size:18 final size:18
Alignment explanation
Indices: 94493866--94493909 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
94493856 TCAAGAGAGC
94493866 AAAAAAATTTCCAGCAAA
1 AAAAAAATTTCCAGCAAA
*
94493884 AAAAAAAATTCCAGCAAA
1 AAAAAAATTTCCAGCAAA
94493902 AAAAAAAT
1 AAAAAAAT
94493910 AAACAAAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.68, C:0.14, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAAAAATTTCCAGCAAA
Found at i:94494804 original size:17 final size:15
Alignment explanation
Indices: 94494771--94494822 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
94494761 TATTATCAGT
94494771 TATATATTTCTATAC
1 TATATATTTCTATAC
94494786 TATATGATTTCTAATAC
1 TATAT-ATTTCT-ATAC
*
94494803 TAT-TATTTATATA-
1 TATATATTTCTATAC
94494816 TATATAT
1 TATATAT
94494823 ATATTTTTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
13 3 0.09
14 6 0.18
15 10 0.30
16 7 0.21
17 7 0.21
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (15 bp):
TATATATTTCTATAC
Found at i:94494885 original size:21 final size:21
Alignment explanation
Indices: 94494860--94494914 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
94494850 TATATCATGT
*
94494860 ATATATTTATTTTTACTCGTA
1 ATATATTTATTTTTAATCGTA
* * **
94494881 TTATATTTATTATTAATTTTA
1 ATATATTTATTTTTAATCGTA
94494902 ATATATTTATTTT
1 ATATATTTATTTT
94494915 ATCATACGTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (21 bp):
ATATATTTATTTTTAATCGTA
Found at i:94495255 original size:16 final size:16
Alignment explanation
Indices: 94495219--94495257 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
94495209 ATATTTTTGC
*
94495219 ATATTATCTTATATAT
1 ATATTACCTTATATAT
94495235 ATATTACCTTATAT-T
1 ATATTACCTTATATAT
94495250 ATTATTAC
1 A-TATTAC
94495258 TAAATATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.10
16 19 0.90
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (16 bp):
ATATTACCTTATATAT
Found at i:94503236 original size:25 final size:25
Alignment explanation
Indices: 94503112--94503227 Score: 214
Period size: 25 Copynumber: 4.6 Consensus size: 25
94503102 CATATATATT
*
94503112 CGCACACATAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
94503137 CGCACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
94503162 CGCACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
*
94503187 CGCACACTTAGTGCCATATAATTTC
1 CGCACACTTAGTGCCATACAATTTC
94503212 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
94503228 AGTCATTTCG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 89 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (25 bp):
CGCACACTTAGTGCCATACAATTTC
Found at i:94503236 original size:50 final size:50
Alignment explanation
Indices: 94503099--94503227 Score: 217
Period size: 50 Copynumber: 2.6 Consensus size: 50
94503089 ACACACCGAA
*
94503099 TGCCATAT-ATATT-CGCACACATAGTGCCATACAATTTCCGCACACTTAG
1 TGCCATATAAT-TTCCGCACACTTAGTGCCATACAATTTCCGCACACTTAG
*
94503148 TGCCATACAATTTCCGCACACTTAGTGCCATACAATTTCCGCACACTTAG
1 TGCCATATAATTTCCGCACACTTAGTGCCATACAATTTCCGCACACTTAG
94503198 TGCCATATAATTTCCGCACACTTAGTGCCA
1 TGCCATATAATTTCCGCACACTTAGTGCCA
94503228 AGTCATTTCG
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
49 9 0.12
50 66 0.88
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (50 bp):
TGCCATATAATTTCCGCACACTTAGTGCCATACAATTTCCGCACACTTAG
Found at i:94518865 original size:25 final size:26
Alignment explanation
Indices: 94518819--94518867 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
94518809 GACAAAATTG
94518819 TCAAAATTTTACCTGAGGTAAAATCA
1 TCAAAATTTTACCTGAGGTAAAATCA
94518845 TCAAAATTTTA-CTGAGGTAAAAT
1 TCAAAATTTTACCTGAGGTAAAAT
94518868 ATGGATGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACCTGAGGTAAAATCA
Found at i:94537994 original size:14 final size:14
Alignment explanation
Indices: 94537969--94538002 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
94537959 AAAGAATTAA
94537969 AGAAACAAAGAAAC
1 AGAAACAAAGAAAC
94537983 A-AAACAAAAGAAAC
1 AGAAAC-AAAGAAAC
94537997 AGAAAC
1 AGAAAC
94538003 GAAGCAGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 10 0.56
15 4 0.22
ACGTcount: A:0.74, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
AGAAACAAAGAAAC
Found at i:94554448 original size:14 final size:14
Alignment explanation
Indices: 94554431--94554458 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
94554421 TTGCATGCAT
94554431 AAAATTTAAAATAA
1 AAAATTTAAAATAA
94554445 AAAATTTAAAATAA
1 AAAATTTAAAATAA
94554459 CATTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAATTTAAAATAA
Found at i:94555176 original size:14 final size:14
Alignment explanation
Indices: 94555159--94555233 Score: 69
Period size: 14 Copynumber: 5.4 Consensus size: 14
94555149 TTGTACATGC
94555159 GGATTCATAGATGT
1 GGATTCATAGATGT
* *
94555173 GGATCCATAGATGC
1 GGATTCATAGATGT
* * *
94555187 GAATTAATACATGT
1 GGATTCATAGATGT
*
94555201 GGATTTATAGATGT
1 GGATTCATAGATGT
* * *
94555215 AGATTCATAAATGC
1 GGATTCATAGATGT
94555229 GGATT
1 GGATT
94555234 GTCCTACAGA
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 46 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (14 bp):
GGATTCATAGATGT
Found at i:94555184 original size:42 final size:41
Alignment explanation
Indices: 94555137--94555229 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 41
94555127 GTGTTTATTT
** *
94555137 ATAGATGCAGATTTGTACATGCGGATTCATAGATGTGGATCC
1 ATAGATGC-GATTAATACATGCGGATTCATAGATGTAGATCC
* * *
94555179 ATAGATGCGAATTAATACATGTGGATTTATAGATGTAGATTC
1 ATAGATGCG-ATTAATACATGCGGATTCATAGATGTAGATCC
*
94555221 ATAAATGCG
1 ATAGATGCG
94555230 GATTGTCCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.02
42 42 0.98
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.32
Consensus pattern (41 bp):
ATAGATGCGATTAATACATGCGGATTCATAGATGTAGATCC
Found at i:94557609 original size:20 final size:19
Alignment explanation
Indices: 94557585--94557635 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
94557575 AGGTTAATTA
*
94557585 ACTTAATTAAT-TATGTTTT
1 ACTTAATTAATCT-TATTTT
94557604 ATCTTAATTAATCTTATTTT
1 A-CTTAATTAATCTTATTTT
94557624 ACTTAATTAATC
1 ACTTAATTAATC
94557636 AACATATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 12 0.41
20 16 0.55
21 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (19 bp):
ACTTAATTAATCTTATTTT
Found at i:94558479 original size:96 final size:96
Alignment explanation
Indices: 94558372--94558553 Score: 319
Period size: 96 Copynumber: 1.9 Consensus size: 96
94558362 ATATGATGTA
* *
94558372 AAGAGATTAATTTATTTGATTATTAAATCAAGAGAGCAAAATGTGATTCACTTTTAATGCAAAGG
1 AAGAGATTAATTTATTCGATTATTAAATCAAGAGAGCAAAATGTAATTCACTTTTAATGCAAAGG
*
94558437 CCTTCCTTTTCTTTTGCGAATGAGCGTTAAG
66 CCTTCCTTTCCTTTTGCGAATGAGCGTTAAG
* *
94558468 AAGAGATTAATTTATTCGATTATTAAATCGAGAGAGCAAAATGTAATTCACTTTTAATGTAAAGG
1 AAGAGATTAATTTATTCGATTATTAAATCAAGAGAGCAAAATGTAATTCACTTTTAATGCAAAGG
94558533 CCTTCCTTTCCTTTTGCGAAT
66 CCTTCCTTTCCTTTTGCGAAT
94558554 AGGCATTACT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 81 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (96 bp):
AAGAGATTAATTTATTCGATTATTAAATCAAGAGAGCAAAATGTAATTCACTTTTAATGCAAAGG
CCTTCCTTTCCTTTTGCGAATGAGCGTTAAG
Found at i:94562140 original size:136 final size:136
Alignment explanation
Indices: 94561997--94562420 Score: 392
Period size: 139 Copynumber: 3.1 Consensus size: 136
94561987 AATGAAAATT
* * * *
94561997 TTAAAAATTTGTCAAAAAACTCGCCCTAACCCTATTTTCGACGACAAAACCTAAATTTTGATGAG
1 TTAAAAATATGTCAAAAAACTCGTCCAAACCCTATTTTCGGCGACAAAACCTAAATTTTGATGAG
* * * * *
94562062 CCCTTTTCCGTTTTTAAACCTTGATTTTGATTTCTTTCTTACCTCAATTCAAAACT-TATGTATT
66 -CTTTTTCCATTTTTAAACCTCGATTTTGATTCCTTTCTCACCTCAATTCAAAACTATATGTATT
94562126 ATTTTTC
130 ATTTTTC
* * * *
94562133 TTAAAAATAAACTGTCAAAAAA-TTGATCAAAACCCTATTTTCGGCAACAAAA-CTCGAATTTTG
1 TTAAAAAT--A-TGTCAAAAAACTCG-TCCAAACCCTATTTTCGGCGACAAAACCT-AAATTTTG
* * * * * ** * *
94562196 ACGAGTTTTTTTTACTTTTTTAAACCTCGATTTTGATTCCTTTCTCACATTGATACAAAA-TCTA
61 ATGAG--CTTTTTCCATTTTTAAACCTCGATTTTGATTCCTTTCTCACCTCAATTCAAAACTATA
94562260 TGTATTA-TTTTC
124 TGTATTATTTTTC
* *** * * * * * *
94562272 CTAAAAATAACCCATCAAAACTCATCCAAACCCTATTTTTGGTGACAAAACCCAAATTTCGATGA
1 TTAAAAATATGTCA-AAAAACTCGTCCAAACCCTATTTTCGGCGACAAAACCTAAATTTTGATGA
*
94562337 GCTTCTTTCCATTTTTAAACCTCGATTTCGATTCCTTTCTCACCTCAATTCAAAACCTATACTGT
65 GCTT-TTTCCATTTTTAAACCTCGATTTTGATTCCTTTCTCACCTCAATTCAAAA-CTATA-TGT
94562402 ATT-TTTTTCC
127 ATTATTTTT-C
94562412 TTAAAAATA
1 TTAAAAATA
94562421 ACTTTCGCCT
Statistics
Matches: 226, Mismatches: 46, Indels: 28
0.75 0.15 0.09
Matches are distributed among these distances:
135 2 0.01
136 53 0.23
137 37 0.16
138 9 0.04
139 65 0.29
140 60 0.27
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (136 bp):
TTAAAAATATGTCAAAAAACTCGTCCAAACCCTATTTTCGGCGACAAAACCTAAATTTTGATGAG
CTTTTTCCATTTTTAAACCTCGATTTTGATTCCTTTCTCACCTCAATTCAAAACTATATGTATTA
TTTTTC
Found at i:94562167 original size:139 final size:137
Alignment explanation
Indices: 94562024--94562421 Score: 410
Period size: 140 Copynumber: 2.9 Consensus size: 137
94562014 AACTCGCCCT
* * * *
94562024 AACCCTATTTTCGACGACAAAACCTAAATTTTGATGAGCCCTTTTCCGTTTTTAAACCTTGATTT
1 AACCCTATTTTCGGCGACAAAACCTAAATTTTGATGAG-CTTTTTCCATTTTTAAACCTCGATTT
* * **
94562089 TGATTTCTTTCTTACCTCAATTCAAAACT-TATGTATTATTTTTCTTAAAAATAAACTGTCAAAA
65 TGATTCCTTTCTCACCTCAATTCAAAACTATATGTATTATTTTTCTTAAAAATAAACCATC--AA
* *
94562153 AATTGATCAA
128 AACTCATCAA
* * * * * *
94562163 AACCCTATTTTCGGCAACAAAA-CTCGAATTTTGACGAGTTTTTTTTACTTTTTTAAACCTCGAT
1 AACCCTATTTTCGGCGACAAAACCT-AAATTTTGATGAG--CTTTTTCCATTTTTAAACCTCGAT
* ** * * * *
94562227 TTTGATTCCTTTCTCACATTGATACAAAA-TCTATGTATTA-TTTTCCTAAAAATAACCCATCAA
63 TTTGATTCCTTTCTCACCTCAATTCAAAACTATATGTATTATTTTTCTTAAAAATAAACCATCAA
*
94562290 AACTCATCCA
128 AACTCATCAA
* * * *
94562300 AACCCTATTTTTGGTGACAAAACCCAAATTTCGATGAGCTTCTTTCCATTTTTAAACCTCGATTT
1 AACCCTATTTTCGGCGACAAAACCTAAATTTTGATGAGCTT-TTTCCATTTTTAAACCTCGATTT
*
94562365 CGATTCCTTTCTCACCTCAATTCAAAACCTATACTGTATT-TTTTTCCTTAAAAATAA
65 TGATTCCTTTCTCACCTCAATTCAAAA-CTATA-TGTATTATTTTT-CTTAAAAATAA
94562422 CTTTCGCCTA
Statistics
Matches: 209, Mismatches: 40, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
135 2 0.01
136 43 0.21
137 38 0.18
138 6 0.03
139 59 0.28
140 61 0.29
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (137 bp):
AACCCTATTTTCGGCGACAAAACCTAAATTTTGATGAGCTTTTTCCATTTTTAAACCTCGATTTT
GATTCCTTTCTCACCTCAATTCAAAACTATATGTATTATTTTTCTTAAAAATAAACCATCAAAAC
TCATCAA
Found at i:94563065 original size:1 final size:1
Alignment explanation
Indices: 94563059--94563083 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
94563049 TTGAGCGCAC
94563059 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
94563084 GAGAGAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:94563278 original size:19 final size:19
Alignment explanation
Indices: 94563254--94563292 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
94563244 TTGTTAGTTT
94563254 TCATTACTAAGGGAAGCCA
1 TCATTACTAAGGGAAGCCA
*
94563273 TCATTACTAGGGGAAGCCA
1 TCATTACTAAGGGAAGCCA
94563292 T
1 T
94563293 GAGGTTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (19 bp):
TCATTACTAAGGGAAGCCA
Found at i:94564605 original size:2 final size:2
Alignment explanation
Indices: 94564600--94564624 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
94564590 AATATCACAC
94564600 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
94564625 AATAGGGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94566225 original size:12 final size:12
Alignment explanation
Indices: 94566208--94566236 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
94566198 ATAAGCTAAA
94566208 TTTTGATACGAT
1 TTTTGATACGAT
94566220 TTTTGATACGAT
1 TTTTGATACGAT
94566232 TTTTG
1 TTTTG
94566237 TTATCACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.07, G:0.17, T:0.55
Consensus pattern (12 bp):
TTTTGATACGAT
Found at i:94567822 original size:17 final size:17
Alignment explanation
Indices: 94567797--94567830 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94567787 GTACTCTGTA
*
94567797 ATGTGATCCAACTCGAT
1 ATGTAATCCAACTCGAT
94567814 ATGTAATCCAACTCGAT
1 ATGTAATCCAACTCGAT
94567831 CCAGTTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (17 bp):
ATGTAATCCAACTCGAT
Found at i:94567937 original size:26 final size:26
Alignment explanation
Indices: 94567907--94567966 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
94567897 CTACCCCTAA
* *
94567907 TAAAATTTTGACAATTTTACTCTTGG
1 TAAAATTTTGACAATTTTACCCATGG
* *
94567933 TAAAATTTTGACGATTTTGCCCATGG
1 TAAAATTTTGACAATTTTACCCATGG
94567959 TAAAATTT
1 TAAAATTT
94567967 CAAGAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (26 bp):
TAAAATTTTGACAATTTTACCCATGG
Found at i:94568130 original size:6 final size:6
Alignment explanation
Indices: 94568116--94568149 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
94568106 CAAATGAATT
*
94568116 ATTTCC ATTTTC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
94568150 TTGGAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:94570988 original size:47 final size:47
Alignment explanation
Indices: 94570919--94571010 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
94570909 ACCATTAAAA
*
94570919 ACTTTCTTTAAAGATGCATTCTCATCAAAGTTTAAGCTTGATTGAAT
1 ACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTGATTGAAT
94570966 ACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTGATTGA
1 ACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTGATTGA
94571011 GTCTTTGATC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (47 bp):
ACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTGATTGAAT
Found at i:94574444 original size:46 final size:46
Alignment explanation
Indices: 94574386--94574477 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
94574376 ATTTCAATTG
* ** *
94574386 GTTTGCTCATTTTTTATTAGACTAAAGACATGTTTAAGTTCTTCTA
1 GTTTACTCATTTTCAATTAGACTAAAGACATGTTTAAGTTCGTCTA
* * *
94574432 GTTTACTCATTTTCAATTAGACTAAGGGCATGTTTAGGTTCGTCTA
1 GTTTACTCATTTTCAATTAGACTAAAGACATGTTTAAGTTCGTCTA
94574478 CTAAAATAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (46 bp):
GTTTACTCATTTTCAATTAGACTAAAGACATGTTTAAGTTCGTCTA
Found at i:94579246 original size:40 final size:39
Alignment explanation
Indices: 94579182--94579277 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 39
94579172 ACCATCTCCG
* * *
94579182 TCCAACCCAACACACC-ATATGGGGATAAGATCGACCCA
1 TCCAACCCTACACACCAATATGGGGATAAAATCAACCCA
*
94579220 -CCTAGCCCTACACACCAAGTATGGGGATAAAATCAACCCA
1 TCC-AACCCTACACACCAA-TATGGGGATAAAATCAACCCA
*
94579260 TCCAACCCTACATACCAA
1 TCCAACCCTACACACCAA
94579278 AAGGTACCGT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
37 2 0.04
38 11 0.23
39 1 0.02
40 32 0.67
41 2 0.04
ACGTcount: A:0.38, C:0.35, G:0.12, T:0.15
Consensus pattern (39 bp):
TCCAACCCTACACACCAATATGGGGATAAAATCAACCCA
Found at i:94587560 original size:20 final size:20
Alignment explanation
Indices: 94587535--94587574 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
94587525 CGCTAACATT
94587535 GCATGGTTTATGAAAAAAGA
1 GCATGGTTTATGAAAAAAGA
94587555 GCATGGTTTATGAAAAAAGA
1 GCATGGTTTATGAAAAAAGA
94587575 AACATGGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (20 bp):
GCATGGTTTATGAAAAAAGA
Found at i:94587580 original size:21 final size:20
Alignment explanation
Indices: 94587536--94587582 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
94587526 GCTAACATTG
*
94587536 CATGGTTTATGAAAAAAGAG
1 CATGGTTTATGAAAAAAGAA
94587556 CATGGTTTATGAAAAAAGAAA
1 CATGGTTTATGAAAAAAG-AA
94587577 CATGGT
1 CATGGT
94587583 CATGGATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 18 0.72
21 7 0.28
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.26
Consensus pattern (20 bp):
CATGGTTTATGAAAAAAGAA
Found at i:94591130 original size:42 final size:43
Alignment explanation
Indices: 94591053--94591173 Score: 117
Period size: 42 Copynumber: 2.8 Consensus size: 43
94591043 GTCGATCTGA
* *
94591053 GATTTACGTGTAAGACCATGTCTGGGATA-TAGGCATTACAT-TT
1 GATTT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATTACATATT
**
94591096 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCA-TGGATATT
1 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATTACATATT
* *
94591138 GATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATT
1 GATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATT
94591174 GTACGAGCTT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
41 4 0.06
42 55 0.82
43 8 0.12
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATTACATATT
Found at i:94599317 original size:20 final size:18
Alignment explanation
Indices: 94599283--94599325 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
94599273 TAAAGGTAAT
94599283 TTATAATATATTATTTTA
1 TTATAATATATTATTTTA
94599301 TTATATATATATATATTTTA
1 TTATA-ATATAT-TATTTTA
94599321 -TATAA
1 TTATAA
94599326 AAATAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.26
19 10 0.43
20 7 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTATAATATATTATTTTA
Found at i:94602638 original size:54 final size:53
Alignment explanation
Indices: 94602460--94602667 Score: 215
Period size: 54 Copynumber: 3.9 Consensus size: 53
94602450 ATATATCATA
* * * * * * * *
94602460 CCGATGCCATATCCCGGATATTGTCTTACACGGGAA-CACTTATCACATTTCT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATCACTTTTAT
* *
94602512 CCGATGCCATAGCCCAGCTATGGTCTTATACGG--ATCACTTGTATTACTTTAAT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCAC-T-TATCACTTTTAT
* * * *
94602565 CCGAAGCCATAGCCTAGCTATAGTCTTATACGGAAATCACTTATCACTTGTTTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATCACTT-TTAT
* * *
94602619 TCGATGTCATAGCCCAGCTATGGTCTTATACGGATATCACTTATCACTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATCACTT
94602668 GTTGCCATGG
Statistics
Matches: 129, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
50 1 0.01
51 3 0.02
52 29 0.22
53 45 0.35
54 46 0.36
55 5 0.04
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (53 bp):
CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATCACTTTTAT
Found at i:94602670 original size:54 final size:52
Alignment explanation
Indices: 94602460--94602667 Score: 213
Period size: 53 Copynumber: 3.9 Consensus size: 52
94602450 ATATATCATA
* * * * * * *
94602460 CCGATGCCATATCCCGGATATTGTCTTACACGGGAA-CACTTATCACATTTCT
1 CCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCACTTATCACTTTTAT
* *
94602512 CCGATGCCATAGCCCAGCTATGGTCTTATACGG-ATCACTTGTATTACTTTAAT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC-T-TATCACTTTTAT
* * * *
94602565 CCGAAGCCATAGCCTAGCTATAGTCTTATACGGAAATCACTTATCACTTGTTTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGG-AATCACTTATCACTT-TTAT
* *
94602619 TCGATGTCATAGCCCAGCTATGGTCTTATACGGATATCACTTATCACTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGA-ATCACTTATCACTT
94602668 GTTGCCATGG
Statistics
Matches: 129, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
50 1 0.01
51 5 0.04
52 27 0.21
53 46 0.36
54 45 0.35
55 5 0.04
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (52 bp):
CCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACTTATCACTTTTAT
Found at i:94604354 original size:14 final size:14
Alignment explanation
Indices: 94604332--94604364 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
94604322 GCAATGATAG
94604332 CAATACGAAATGCA
1 CAATACGAAATGCA
*
94604346 CAATTCGAAATGCA
1 CAATACGAAATGCA
94604360 CAATA
1 CAATA
94604365 GCAATAATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.21, G:0.12, T:0.18
Consensus pattern (14 bp):
CAATACGAAATGCA
Found at i:94613719 original size:27 final size:27
Alignment explanation
Indices: 94613579--94613702 Score: 194
Period size: 27 Copynumber: 4.6 Consensus size: 27
94613569 TTAGTTTACC
94613579 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
94613606 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
94613633 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
94613660 AAATTATCAAACTACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
94613687 AAATTACCAAAATACC
1 AAATTACCAAAATACC
94613703 TTTGATTTGT
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:94613741 original size:81 final size:80
Alignment explanation
Indices: 94613579--94613802 Score: 227
Period size: 81 Copynumber: 2.8 Consensus size: 80
94613569 TTAGTTTACC
* *
94613579 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTATC-AAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
* **
94613644 ATACCCCTAGTTTGTA
65 ATACCCCGAGCCTGTA
* * * * ***
94613660 AAATTATCAAACTACCCCTAGTTTATAAAATTACCAAAATACCTTTGATTTGTGAAATTATTGAA
1 AAATTATCAAA-TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
94613725 ATACCCTCGA-CCTGTA
65 ATACCC-CGAGCCTGTA
* * * * * *
94613741 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACAGAATTACC
1 AAATTA-TCAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACC
94613803 GTTTTACCCT
Statistics
Matches: 115, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
80 8 0.07
81 101 0.88
82 6 0.05
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (80 bp):
AAATTATCAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAA
TACCCCGAGCCTGTA
Found at i:94613783 original size:27 final size:27
Alignment explanation
Indices: 94613579--94613837 Score: 173
Period size: 27 Copynumber: 9.6 Consensus size: 27
94613569 TTAGTTTACC
*
94613579 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
94613606 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
94613633 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * *
94613660 AAATTATCAAACTACCC-CTAGTTTATA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
94613687 AAATTACCAAAATACCTTTGATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
*** **
94613714 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
94613741 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
94613768 AAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** **
94613795 GAATTACCGTTTTACCCTCGATTTAAA
1 AAATTACCAAAATACCCTCGATTTGTA
*
94613822 AAATTACCGAAATACC
1 AAATTACCAAAATACC
94613838 TTTGTAGGGT
Statistics
Matches: 183, Mismatches: 46, Indels: 6
0.78 0.20 0.03
Matches are distributed among these distances:
27 182 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:94613851 original size:27 final size:27
Alignment explanation
Indices: 94613821--94614207 Score: 444
Period size: 27 Copynumber: 14.3 Consensus size: 27
94613811 CTCGATTTAA
*
94613821 AAAATTACCGAAATACCTTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
94613848 AAAAATACTGAAATACCCTTATAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
94613875 AGAAA-TACCGAAATACCCTTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
94613902 AGAAA-TACCGAAATACCCTTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
94613929 AGAAA-TACCGAAATACCCTTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* * *
94613956 AGAAA-TACCCAAATACCTTTGTAGGAT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* ** *
94613983 AGAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
*
94614010 AGAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
94614037 AGAAA-TACCAAAATACCCCTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* * *
94614064 AGAATTACCAAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
94614091 AGAATTACCGAAATACCCTTGTACGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
94614118 AAAAATACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
94614145 AGAATTACTGAAATACTCC-TGTAAGGT
1 AAAATTACCGAAATAC-CCTTGTAGGGT
* *
94614172 AAAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
94614199 AAAATTACC
1 AAAATTACC
94614208 ATTTTACCCC
Statistics
Matches: 316, Mismatches: 38, Indels: 12
0.86 0.10 0.03
Matches are distributed among these distances:
26 6 0.02
27 303 0.96
28 7 0.02
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:94614192 original size:81 final size:80
Alignment explanation
Indices: 94613823--94614203 Score: 496
Period size: 81 Copynumber: 4.7 Consensus size: 80
94613813 CGATTTAAAA
* * * *
94613823 AATTACCGAAATACCTTTGTAGGGTAAAAATACTGAAATACCCTTATAGGGTAGAAATACCGAAA
1 AATTACCGAAATACC-CTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
94613888 TACCCTTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* *
94613904 AAATACCGAAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCTTGTAGGGTAGAAATACCCAA
1 AATTACCGAAATACCC-TGTAGGGTA-AAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
** *
94613968 ATACCTTTGTAGGATAG
64 ATACCCCTGTAGGGTAG
** * *
94613985 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAA
1 AATTACCGAAATA-CCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
94614050 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * * *
94614066 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTACGGTAAAAATACCGAAA
1 AATTACCGAAATA-CCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
94614131 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * * *
94614147 AATTACTGAAATACTCCTGTAAGGTAAAATTACCGAGATACCCTTGTGGGGTA-AAAT
1 AATTACCGAAATAC-CCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAAAT
94614204 TACCATTTTA
Statistics
Matches: 269, Mismatches: 26, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
80 7 0.03
81 256 0.95
82 6 0.02
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (80 bp):
AATTACCGAAATACCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAAT
ACCCCTGTAGGGTAG
Found at i:94614571 original size:26 final size:27
Alignment explanation
Indices: 94614542--94614601 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
94614532 CCACATATAT
*
94614542 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
94614568 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
94614595 ATATCTG
1 ATATCTG
94614602 GTAACCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:94614729 original size:6 final size:6
Alignment explanation
Indices: 94614720--94614912 Score: 155
Period size: 6 Copynumber: 31.3 Consensus size: 6
94614710 TTGCATTCAC
* *
94614720 ATTCTG ATTCTG ATTCTG ATTTTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * *
94614769 -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* *
94614819 ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
94614868 -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
94614913 AATGTTTCTT
Statistics
Matches: 150, Mismatches: 20, Indels: 34
0.74 0.10 0.17
Matches are distributed among these distances:
5 10 0.07
6 120 0.80
7 13 0.09
8 7 0.05
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:94614751 original size:25 final size:25
Alignment explanation
Indices: 94614723--94614891 Score: 147
Period size: 25 Copynumber: 6.8 Consensus size: 25
94614713 CATTCACATT
*
94614723 CTGATTCTGATTCTGATTTTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
*
94614748 CTGATACTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
* *
94614773 CTAATTCTGATTCTGGTTCTGATT--
1 CTGATTCTGATTCTGATTCTG-TTAC
*
94614797 CTGATTCTG-TTACCTGATACTGATT--
1 CTGATTCTGATT--CTGATTCTG-TTAC
*
94614822 CTGATTCTG-TTACCTAATTCTGATT--
1 CTGATTCTGATT--CTGATTCTG-TTAC
* *
94614847 CTGATTCTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTTAC
94614872 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
94614892 CATTTTGATT
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
23 3 0.02
24 15 0.12
25 102 0.82
26 4 0.03
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTTAC
Found at i:94614795 original size:37 final size:37
Alignment explanation
Indices: 94614748--94614830 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
94614738 ATTTTGTTAC
* *
94614748 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
* *
94614785 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
94614822 CTGATTCTG
1 CTGATTCTG
94614831 TTACCTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
Found at i:94614817 original size:62 final size:62
Alignment explanation
Indices: 94614720--94614891 Score: 299
Period size: 62 Copynumber: 2.8 Consensus size: 62
94614710 TTGCATTCAC
*
94614720 ATTCTGATTCTGATTCTGATTTTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTG
*
94614782 ATTCTGGTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTG
* * *
94614844 ATTCTGATTCTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT
94614892 CATTTTGATT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 104 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTG
Found at i:94614822 original size:19 final size:19
Alignment explanation
Indices: 94614754--94614886 Score: 130
Period size: 19 Copynumber: 6.8 Consensus size: 19
94614744 TTACCTGATA
94614754 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
94614773 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
94614791 CTGATTCTGATTCTGTTACC
1 CTGATTCTGATTCTGTTA-C
94614811 TGATACTGATTCTGATTCTGTTAC
1 -----CTGATTCTGATTCTGTTAC
*
94614835 CTAATTCTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* *
94614853 CTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
94614872 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
94614887 ATTCTCATTT
Statistics
Matches: 95, Mismatches: 7, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
17 4 0.04
18 26 0.27
19 41 0.43
20 5 0.05
24 1 0.01
25 18 0.19
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.47
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:94614851 original size:37 final size:37
Alignment explanation
Indices: 94614810--94614903 Score: 143
Period size: 37 Copynumber: 2.5 Consensus size: 37
94614800 ATTCTGTTAC
* * *
94614810 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
*
94614847 CTGATTCTGATTTTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
*
94614884 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTTTGATTCT
94614904 AGTTCTGATA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTTTGATTCTGTCACCTAATTCTGATT
Found at i:94616389 original size:14 final size:14
Alignment explanation
Indices: 94616370--94616406 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
94616360 TCGATGCCTT
*
94616370 TTTGCATTCATGCA
1 TTTGCATTAATGCA
94616384 TTTGCATTAATGCA
1 TTTGCATTAATGCA
94616398 TTTGCATTA
1 TTTGCATTA
94616407 CACCACATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.24, C:0.16, G:0.14, T:0.46
Consensus pattern (14 bp):
TTTGCATTAATGCA
Found at i:94624832 original size:206 final size:206
Alignment explanation
Indices: 94624465--94625019 Score: 851
Period size: 206 Copynumber: 2.7 Consensus size: 206
94624455 GCAGATCTGG
* * *
94624465 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCAAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
94624530 ATTTGGCTTTCACGTGTTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGA
* * *
94624595 GAACAAATTGAAATTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
* * *
94624660 GGAT-GTTTATA
196 AGATAATTT-CA
* * *
94624671 CTGAAGTAGATCCATGATGGTTTGGCATCCTTGTGCTTACAAGCAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
94624736 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGA
* * *
94624801 GAACAAATCGAAGTTTGACGTCTCTATATTCGATGGAGGGCAGACACATAGCAGATCTCACCTTC
131 GAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
94624866 AGATAATTTCA
196 AGATAATTTCA
* * * * * *
94624877 CTGAAGCAGTTCCAAGATGATTTGACATTCTTATGTTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
94624942 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGTATCTCTGTATTCTTAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGA
94625007 GAACAAATCGAAG
131 GAACAAATCGAAG
94625020 AAGCGGATTT
Statistics
Matches: 318, Mismatches: 30, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
206 315 0.99
207 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATAATTTCA
Found at i:94625030 original size:43 final size:44
Alignment explanation
Indices: 94624982--94625064 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 44
94624972 AATCTAAGAT
* *
94624982 GATTTGGTATCTCTGTATTC-TTAGAGAACAAATCGAAGAAGCG
1 GATTTGGCATCTCTGTATTCGGTAGAGAACAAATCGAAGAAGCG
* *
94625025 GATTTGGCATCTCTGTGTTCGGTAGAGAGCAAATCGAAGA
1 GATTTGGCATCTCTGTATTCGGTAGAGAACAAATCGAAGA
94625065 TATCAATATG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
43 18 0.51
44 17 0.49
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTCGGTAGAGAACAAATCGAAGAAGCG
Found at i:94626651 original size:24 final size:26
Alignment explanation
Indices: 94626624--94626675 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
94626614 TATCATTTAT
94626624 TTATT-TTAAAAA-ACTATACATATA
1 TTATTATTAAAAATACTATACATATA
**
94626648 TTATTATTAAAAATACTATTTATATA
1 TTATTATTAAAAATACTATACATATA
94626674 TT
1 TT
94626676 TATATAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 7 0.29
26 12 0.50
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (26 bp):
TTATTATTAAAAATACTATACATATA
Found at i:94626678 original size:24 final size:25
Alignment explanation
Indices: 94626618--94626706 Score: 80
Period size: 25 Copynumber: 3.6 Consensus size: 25
94626608 TATATATATC
94626618 ATTTAT-T-TATT-TTAAAAA-ACT
1 ATTTATATATATTATTAAAAATACT
**
94626639 ATACATATATTATTATTAAAAATACT
1 ATTTATATA-TATTATTAAAAATACT
**
94626665 ATTTATATAT-TTATATAAAAATTTT
1 ATTTATATATATTAT-TAAAAATACT
94626690 ATTTATCATATATTATT
1 ATTTAT-ATATATTATT
94626707 TTCCTATATA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
21 4 0.07
22 1 0.02
24 8 0.15
25 22 0.41
26 15 0.28
27 4 0.07
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTATATATATTATTAAAAATACT
Found at i:94626733 original size:19 final size:19
Alignment explanation
Indices: 94626685--94626786 Score: 66
Period size: 19 Copynumber: 5.0 Consensus size: 19
94626675 TTATATAAAA
94626685 ATTTTATT-TATCATA-TATT
1 ATTTTATTATAT-ATATTA-T
**
94626704 ATTTTCCTATATATATTAT
1 ATTTTATTATATATATTAT
94626723 ATTTTATTATATAACATTTATTAT
1 ATTTTATTATAT---A--TATTAT
*
94626747 ATTTTATTAAATATTACTTATT
1 ATTTTATTATATA-TA-TTA-T
94626769 ATTTT-TTATATATATTAT
1 ATTTTATTATATATATTAT
94626787 GTATATCGTA
Statistics
Matches: 68, Mismatches: 6, Indels: 19
0.73 0.06 0.20
Matches are distributed among these distances:
18 1 0.01
19 23 0.34
20 10 0.15
21 10 0.15
22 7 0.10
24 17 0.25
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATTATATATATTAT
Found at i:94626744 original size:24 final size:24
Alignment explanation
Indices: 94626717--94626783 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
94626707 TTCCTATATA
*
94626717 TATTATATTTTATTATATAACATT
1 TATTATATTTTATTATATAACACT
* **
94626741 TATTATATTTTATTAAATATTACT
1 TATTATATTTTATTATATAACACT
*
94626765 TATTATTTTTTATATATAT
1 TATTATATTTTAT-TATAT
94626784 TATGTATATC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 32 0.89
25 4 0.11
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (24 bp):
TATTATATTTTATTATATAACACT
Found at i:94626811 original size:28 final size:28
Alignment explanation
Indices: 94626779--94626847 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
94626769 ATTTTTTATA
*
94626779 TATATTATGTATATCGTATATTA-TCTAT
1 TATATTATTTATATCGTATATTATTC-AT
* **
94626807 TATATTATTTATGTTTTATATTATTCAT
1 TATATTATTTATATCGTATATTATTCAT
94626835 TATATTATTTATA
1 TATATTATTTATA
94626848 ATTTTAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (28 bp):
TATATTATTTATATCGTATATTATTCAT
Found at i:94626818 original size:16 final size:16
Alignment explanation
Indices: 94626799--94626846 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
94626789 ATATCGTATA
94626799 TTATCTATTATATTAT
1 TTATCTATTATATTAT
* *
94626815 TTATGTTTTATATTA-
1 TTATCTATTATATTAT
94626830 -T-TC-ATTATATTAT
1 TTATCTATTATATTAT
94626843 TTAT
1 TTAT
94626847 AATTTTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 7
0.69 0.11 0.19
Matches are distributed among these distances:
12 8 0.32
13 1 0.04
14 2 0.08
15 1 0.04
16 13 0.52
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (16 bp):
TTATCTATTATATTAT
Found at i:94627422 original size:16 final size:15
Alignment explanation
Indices: 94627397--94627426 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
94627387 ATTCATCTCA
94627397 ATATATGCTATGTAT
1 ATATATGCTATGTAT
94627412 ATATGATGCTATGTA
1 ATAT-ATGCTATGTA
94627427 ATTTTAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (15 bp):
ATATATGCTATGTAT
Found at i:94628664 original size:67 final size:67
Alignment explanation
Indices: 94628556--94628690 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
94628546 TATATGATAG
*
94628556 AACAATTCTAGTTTAGATACAGAACAGATCATAAATAGATGCAGTTATTCCTACCCTCATCCACT
1 AACAATTCCAGTTTAGATACAGAACAGATCATAAATAGATGCAGTTATTCCTACCCTCATCCACT
94628621 AC
66 AC
94628623 AACAATTCCAGTTTAGATACAGAACAGATCATAAATAGATGCAGTTATTCCTACCCTCATCCACT
1 AACAATTCCAGTTTAGATACAGAACAGATCATAAATAGATGCAGTTATTCCTACCCTCATCCACT
94628688 AC
66 AC
94628690 A
1 A
94628691 CACCATCTTC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.27
Consensus pattern (67 bp):
AACAATTCCAGTTTAGATACAGAACAGATCATAAATAGATGCAGTTATTCCTACCCTCATCCACT
AC
Found at i:94629966 original size:14 final size:14
Alignment explanation
Indices: 94629961--94629989 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
94629951 AAAAAGAACC
94629961 AGAAAAGAAAGAAA
1 AGAAAAGAAAGAAA
94629975 AGAAAAGAAAGAAA
1 AGAAAAGAAAGAAA
94629989 A
1 A
94629990 TAGAGAAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
AGAAAAGAAAGAAA
Found at i:94638466 original size:13 final size:13
Alignment explanation
Indices: 94638448--94638472 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94638438 ACTAAATAAC
94638448 AAATACAAACTGG
1 AAATACAAACTGG
94638461 AAATACAAACTG
1 AAATACAAACTG
94638473 ATAATTTAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATACAAACTGG
Found at i:94647332 original size:19 final size:19
Alignment explanation
Indices: 94647308--94647452 Score: 239
Period size: 19 Copynumber: 7.9 Consensus size: 19
94647298 ATAATCTTTA
94647308 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
94647327 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94647346 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94647363 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94647381 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94647400 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94647417 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94647435 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
94647453 AGATATGATT
Statistics
Matches: 118, Mismatches: 2, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
17 31 0.26
18 32 0.27
19 55 0.47
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:94647339 original size:36 final size:38
Alignment explanation
Indices: 94647308--94647459 Score: 239
Period size: 35 Copynumber: 4.2 Consensus size: 38
94647298 ATAATCTTTA
*
94647308 ATGATATGCAATCTTAGATATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
94647346 ATGATA--CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
94647381 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
94647417 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
94647453 A-GATATG
1 ATGATATG
94647460 ATTTTGTAAT
Statistics
Matches: 107, Mismatches: 1, Indels: 14
0.88 0.01 0.11
Matches are distributed among these distances:
35 40 0.37
36 35 0.33
37 26 0.24
38 6 0.06
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:94647373 original size:54 final size:54
Alignment explanation
Indices: 94647308--94647452 Score: 272
Period size: 54 Copynumber: 2.7 Consensus size: 54
94647298 ATAATCTTTA
*
94647308 ATGATATGCAATCTTAGATATGATATGTAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
94647363 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
94647417 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
94647453 AGATATGATT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
54 84 0.94
55 5 0.06
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (54 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
Done.