Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 321 of 328
Found at i:95080369 original size:21 final size:21
Alignment explanation
Indices: 95080344--95080385 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
95080334 ATATTTAGTT
95080344 ATTTATTTTTAATTTAATTTA
1 ATTTATTTTTAATTTAATTTA
* *
95080365 ATTTATTTTTTATTTTATTTA
1 ATTTATTTTTAATTTAATTTA
95080386 TTTTTCTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTATTTTTAATTTAATTTA
Found at i:95080379 original size:16 final size:16
Alignment explanation
Indices: 95080360--95080390 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95080350 TTTTAATTTA
95080360 ATTTAATTTATTTTTT
1 ATTTAATTTATTTTTT
*
95080376 ATTTTATTTATTTTT
1 ATTTAATTTATTTTT
95080391 CTACATAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTAATTTATTTTTT
Found at i:95082107 original size:41 final size:41
Alignment explanation
Indices: 95082039--95082138 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 41
95082029 TACTTTAGTT
* ** * *
95082039 TATCTGATGATGCACTTATGTGTTAGTATACTTG-TTCGGTA
1 TATCCGATGATGCACTTACATGCTAGTATA-TTGCTTCAGTA
95082080 TATCCGATGATGCACTTACATGCTAGTATATTGCTTCAGTA
1 TATCCGATGATGCACTTACATGCTAGTATATTGCTTCAGTA
* * *
95082121 CATCCTATGATACACTTA
1 TATCCGATGATGCACTTA
95082139 TGTGCCAACA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
40 3 0.06
41 47 0.94
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (41 bp):
TATCCGATGATGCACTTACATGCTAGTATATTGCTTCAGTA
Found at i:95082271 original size:43 final size:43
Alignment explanation
Indices: 95082169--95082274 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 43
95082159 GTTTTATCCA
** * * * *
95082169 ATGATGCACTATGCATGGCAATATAATTGATTCGGTTTGTTCG
1 ATGATGCACTATGTGTGCCAATATAATTGATTCAGCTTGTCCG
* * *
95082212 ATGATGCACCT-CGTGTGCCAATATAATTGGTTTAGCTTGTCCG
1 ATGATGCA-CTATGTGTGCCAATATAATTGATTCAGCTTGTCCG
95082255 ATGATGCACTATGTGTGCCA
1 ATGATGCACTATGTGTGCCA
95082275 GTATGTTTCC
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
42 2 0.04
43 47 0.92
44 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (43 bp):
ATGATGCACTATGTGTGCCAATATAATTGATTCAGCTTGTCCG
Found at i:95089887 original size:42 final size:42
Alignment explanation
Indices: 95089821--95089947 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
95089811 CTTCGTTTTC
** * * *
95089821 TCGATGCCATAGTTCAACTATGGTCTTACATATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
* *
95089864 T-GATGGCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
95089905 TCGATGCCATAGCCCAGCTATGGTCTTACACA-AATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
95089946 TC
1 TC
95089948 TCACTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 11 0.15
42 61 0.84
43 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:95090008 original size:47 final size:46
Alignment explanation
Indices: 95089906--95090028 Score: 129
Period size: 47 Copynumber: 2.7 Consensus size: 46
95089896 ATTCATATAT
* * * * *
95089906 CGATGCCATAGCCCAGCTATGGTCTTACACAAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACAAAGCACATATCACAC
* * * * *
95089952 TGATTCCATATCTCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATACA-AAGCACATATCACAC
**
95089999 CGATGCCATATCCCAGATACAGTCTTATAC
1 CGATGCCATATCCCAGATATGGTCTTATAC
95090029 GGAAATCACT
Statistics
Matches: 61, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
46 25 0.41
47 36 0.59
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACAAAGCACATATCACAC
Found at i:95090107 original size:31 final size:31
Alignment explanation
Indices: 95090054--95090232 Score: 252
Period size: 31 Copynumber: 5.8 Consensus size: 31
95090044 CTTGTCACTT
* * *
95090054 GTAGCCGAAG-TACCACTATTCACTGTTCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
95090084 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
95090115 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* * *
95090146 GTAGCAGGAACTACCACTTTTCACTAATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
95090177 GTAGCAGGAACTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
95090208 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
95090233 TGTCATTTGT
Statistics
Matches: 136, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 9 0.07
31 127 0.93
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:95090314 original size:50 final size:51
Alignment explanation
Indices: 95090208--95090336 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
95090198 CACTGATCAG
* * *
95090208 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
95090259 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
95090309 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
95090337 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:95099052 original size:21 final size:21
Alignment explanation
Indices: 95099028--95099093 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
95099018 TGTCACTATT
95099028 TAGTTATTCCGTCAAGTATGC
1 TAGTTATTCCGTCAAGTATGC
* * *
95099049 TAGTTCA--CATGTC-ACTAT-T
1 TAGTT-ATTC-CGTCAAGTATGC
95099068 TAGTTATTCCGTCAAGTATGC
1 TAGTTATTCCGTCAAGTATGC
95099089 TAGTT
1 TAGTT
95099094 TTTAACTGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
18 1 0.03
19 8 0.24
20 10 0.30
21 13 0.39
22 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (21 bp):
TAGTTATTCCGTCAAGTATGC
Found at i:95099069 original size:40 final size:40
Alignment explanation
Indices: 95099014--95099093 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
95099004 TGTGGCACAC
95099014 CACATGTCACTATTTAGTTATTCCGTCAAGTATGCTAGTT
1 CACATGTCACTATTTAGTTATTCCGTCAAGTATGCTAGTT
95099054 CACATGTCACTATTTAGTTATTCCGTCAAGTATGCTAGTT
1 CACATGTCACTATTTAGTTATTCCGTCAAGTATGCTAGTT
95099094 TTTAACTGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (40 bp):
CACATGTCACTATTTAGTTATTCCGTCAAGTATGCTAGTT
Found at i:95099262 original size:2 final size:2
Alignment explanation
Indices: 95099255--95099280 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
95099245 TACGAGTATC
95099255 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
95099281 TAGAAGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95099732 original size:14 final size:14
Alignment explanation
Indices: 95099713--95099743 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
95099703 TTTTGTACAT
95099713 TAGATCATCCATTG
1 TAGATCATCCATTG
95099727 TAGATCATCCATTG
1 TAGATCATCCATTG
95099741 TAG
1 TAG
95099744 GATTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (14 bp):
TAGATCATCCATTG
Found at i:95102658 original size:25 final size:25
Alignment explanation
Indices: 95102605--95102663 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
95102595 TAAAAATAGT
* * *
95102605 ATATGTTTTAAATTATTTTGAATGA
1 ATATGTTTTAAATTATATTAAAAGA
95102630 ATATGTTTTAAATTAATATTAAAAG-
1 ATATGTTTTAAATT-ATATTAAAAGA
*
95102655 ATATCTTTT
1 ATATGTTTT
95102664 TTTTTTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 22 0.76
26 7 0.24
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (25 bp):
ATATGTTTTAAATTATATTAAAAGA
Found at i:95107508 original size:20 final size:20
Alignment explanation
Indices: 95107474--95107542 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
95107464 GACATTAAAA
*
95107474 TAAATTAAAATGTTTCTTCAT
1 TAAA-TAAAAAGTTTCTTCAT
* *
95107495 TAAATAAAAAGTTTATCTTAAA
1 TAAATAAAAAG-TT-TCTTCAT
* * *
95107517 TAAATAACAAGTTTATACAT
1 TAAATAAAAAGTTTCTTCAT
95107537 TAAATA
1 TAAATA
95107543 TTTTTATGGA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
20 15 0.39
21 8 0.21
22 15 0.39
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.39
Consensus pattern (20 bp):
TAAATAAAAAGTTTCTTCAT
Found at i:95107520 original size:22 final size:24
Alignment explanation
Indices: 95107495--95107542 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 24
95107485 GTTTCTTCAT
95107495 TAAATAAAAAGTTTAT-C-TTAAA
1 TAAATAAAAAGTTTATACATTAAA
*
95107517 TAAATAACAAGTTTATACATTAAA
1 TAAATAAAAAGTTTATACATTAAA
95107541 TA
1 TA
95107543 TTTTTATGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.65
23 1 0.04
24 7 0.30
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.35
Consensus pattern (24 bp):
TAAATAAAAAGTTTATACATTAAA
Found at i:95110512 original size:23 final size:23
Alignment explanation
Indices: 95110486--95110537 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
95110476 AGGATTAACA
95110486 AATGTTAAAAGAAA-AGTTAAACG
1 AATGTTAAAAGAAACA-TTAAACG
95110509 AATGTTAAAAGAAACATTAAACG
1 AATGTTAAAAGAAACATTAAACG
95110532 AATGTT
1 AATGTT
95110538 GCATGACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 27 0.96
24 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.15, T:0.25
Consensus pattern (23 bp):
AATGTTAAAAGAAACATTAAACG
Found at i:95110517 original size:11 final size:12
Alignment explanation
Indices: 95110485--95110522 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
95110475 TAGGATTAAC
95110485 AAATGTTAAAAG
1 AAATGTTAAAAG
* *
95110497 AAAAGTTAAACG
1 AAATGTTAAAAG
95110509 -AATGTTAAAAG
1 AAATGTTAAAAG
95110520 AAA
1 AAA
95110523 CATTAAACGA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.61, C:0.03, G:0.16, T:0.21
Consensus pattern (12 bp):
AAATGTTAAAAG
Found at i:95111744 original size:53 final size:52
Alignment explanation
Indices: 95111682--95111814 Score: 153
Period size: 51 Copynumber: 2.6 Consensus size: 52
95111672 ATATCCTAGA
* ** ***
95111682 TATGGTCTTATACGGAGTCATATTATCACAACACACTGATGCCATAGCTGGGC
1 TATGGTCTTATACGGAGTCACA-TATCACAACACACCAATGCCATAGCCCAGC
* **
95111735 TATGGTCTTATACGG-GTCACATATCATATTACACCAATGCCATAGCCCAGC
1 TATGGTCTTATACGGAGTCACATATCACAACACACCAATGCCATAGCCCAGC
95111786 TATGGTCTTATACGGAAG-CACATATCACA
1 TATGGTCTTATACGG-AGTCACATATCACA
95111815 TCTTTTCTGT
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
51 37 0.54
52 15 0.22
53 16 0.24
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (52 bp):
TATGGTCTTATACGGAGTCACATATCACAACACACCAATGCCATAGCCCAGC
Found at i:95112902 original size:21 final size:21
Alignment explanation
Indices: 95112878--95112917 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
95112868 AATTAATAAC
95112878 CGAAATGTTAAAATTTCTTAA
1 CGAAATGTTAAAATTTCTTAA
* *
95112899 CGAAATTTTAATATTTCTT
1 CGAAATGTTAAAATTTCTT
95112918 CAATTTTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
CGAAATGTTAAAATTTCTTAA
Found at i:95115865 original size:4 final size:4
Alignment explanation
Indices: 95115856--95115896 Score: 75
Period size: 4 Copynumber: 10.5 Consensus size: 4
95115846 AGCAAACGTG
95115856 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A-AA AG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
95115897 GGAAATTTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 3 0.08
4 33 0.92
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:95116715 original size:47 final size:47
Alignment explanation
Indices: 95116651--95116761 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
95116641 GACATTGAGT
*
95116651 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
95116698 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
95116745 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
95116762 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:95120455 original size:16 final size:16
Alignment explanation
Indices: 95120436--95120472 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
95120426 CCTTTGTCAC
* *
95120436 CTTTTTATTTTATTTT
1 CTTTTAATTCTATTTT
95120452 CTTTTAATTCTATTTT
1 CTTTTAATTCTATTTT
95120468 CTTTT
1 CTTTT
95120473 CAAAAGCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.76
Consensus pattern (16 bp):
CTTTTAATTCTATTTT
Found at i:95122484 original size:2 final size:2
Alignment explanation
Indices: 95122477--95122506 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
95122467 GAAACAGAGC
95122477 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95122507 TTGTTTAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95125171 original size:13 final size:14
Alignment explanation
Indices: 95125155--95125190 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
95125145 CAATCTCATA
95125155 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
95125168 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
95125181 TCTC-ATTTCA
1 TCTCAATTTCA
95125191 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:95125180 original size:18 final size:19
Alignment explanation
Indices: 95125142--95125182 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
95125132 TGGTTCATGT
95125142 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
95125161 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
95125179 TTTC
1 TTTC
95125183 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:95125372 original size:39 final size:40
Alignment explanation
Indices: 95125329--95125440 Score: 111
Period size: 39 Copynumber: 2.8 Consensus size: 40
95125319 TCAGATAGTT
*
95125329 CGAAGTAATATTTGACACCCAGTGTCTCATCG-GCCTAGC
1 CGAAGTAATATTTGACACCCAGTGTCTCATCGAACCTAGC
* ** ** * *
95125368 CGAAGTAA-AGTTGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGTAATATTTGACACCCAGTGTCTCATCGAACCTAGC
* *
95125407 CGAAGAAATATAGTGACACCCAGTGTCTCATCGA
1 CGAAGTAATAT-TTGACACCCAGTGTCTCATCGA
95125441 CTCGAGGTCG
Statistics
Matches: 55, Mismatches: 15, Indels: 4
0.74 0.20 0.05
Matches are distributed among these distances:
38 18 0.33
39 19 0.35
40 1 0.02
41 17 0.31
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
CGAAGTAATATTTGACACCCAGTGTCTCATCGAACCTAGC
Found at i:95127027 original size:5 final size:5
Alignment explanation
Indices: 95127017--95127073 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
95127007 TTACTTCTTT
* *
95127017 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
95127065 ATAT- ATATA
1 ATATA ATATA
95127074 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:95127033 original size:12 final size:12
Alignment explanation
Indices: 95127016--95127071 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
95127006 TTTACTTCTT
95127016 TATATAATATAA
1 TATATAATATAA
95127028 TATATAATATAATA
1 TATATAATAT-A-A
95127042 TACTATAATATAA
1 TA-TATAATATAA
*
95127055 TA-ATAATTTAA
1 TATATAATATAA
95127066 TATATA
1 TATATA
95127072 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:95127086 original size:26 final size:26
Alignment explanation
Indices: 95127018--95127073 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
95127008 TACTTCTTTA
*
95127018 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
95127045 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
95127070 TATA
1 TATA
95127074 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:95132092 original size:10 final size:9
Alignment explanation
Indices: 95132081--95132158 Score: 57
Period size: 10 Copynumber: 8.1 Consensus size: 9
95132071 AAAAATAGAT
95132081 ATTGTAAAA
1 ATTGTAAAA
95132090 TATTGTAAAAA
1 -ATTGT-AAAA
*
95132101 ATTATAAAA
1 ATTGTAAAA
* *
95132110 ATTATTAGAA
1 ATT-GTAAAA
95132120 ATTGTAAAA
1 ATTGTAAAA
95132129 GATTGTAAAAA
1 -ATTGT-AAAA
* *
95132140 ATTATTAAA
1 ATTGTAAAA
*
95132149 ATAGTAAAA
1 ATTGTAAAA
95132158 A
1 A
95132159 CTATTTAAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
9 21 0.39
10 25 0.46
11 8 0.15
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (9 bp):
ATTGTAAAA
Found at i:95132101 original size:39 final size:39
Alignment explanation
Indices: 95132057--95132151 Score: 124
Period size: 39 Copynumber: 2.5 Consensus size: 39
95132047 TTAAAAACTA
* *
95132057 TAAAAAAATTATAAAAA-AATAGATATTGTAAAATATTG
1 TAAAAAAATTATAAAAATAATAGAAATTGTAAAAGATTG
*
95132095 T-AAAAAATTATAAAAATTATTAGAAATTGTAAAAGATTG
1 TAAAAAAATTATAAAAA-TAATAGAAATTGTAAAAGATTG
*
95132134 T-AAAAAATTATTAAAATA
1 TAAAAAAATTATAAAAATA
95132152 GTAAAAACTA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
37 15 0.29
38 3 0.06
39 33 0.65
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (39 bp):
TAAAAAAATTATAAAAATAATAGAAATTGTAAAAGATTG
Found at i:95132123 original size:29 final size:29
Alignment explanation
Indices: 95132091--95132158 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
95132081 ATTGTAAAAT
95132091 ATTGTAAAAAATTAT-AAAAATTATTAGAA
1 ATTGTAAAAAATTATAAAAAATTATTA-AA
* *
95132120 ATTGTAAAAGATTGTAAAAAATTATTAAA
1 ATTGTAAAAAATTATAAAAAATTATTAAA
*
95132149 ATAGTAAAAA
1 ATTGTAAAAA
95132159 CTATTTAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 23 0.68
30 11 0.32
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (29 bp):
ATTGTAAAAAATTATAAAAAATTATTAAA
Found at i:95132127 original size:19 final size:20
Alignment explanation
Indices: 95132076--95132128 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 20
95132066 TATAAAAAAA
* *
95132076 TAGATATTGTAAAATATTGT
1 TAGAAATTGTAAAATATTAT
* * *
95132096 AAAAAATTATAAAA-ATTAT
1 TAGAAATTGTAAAATATTAT
95132115 TAGAAATTGTAAAA
1 TAGAAATTGTAAAA
95132129 GATTGTAAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
TAGAAATTGTAAAATATTAT
Found at i:95133466 original size:17 final size:17
Alignment explanation
Indices: 95133444--95133483 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
95133434 TTTTATAATG
* *
95133444 TATAATATCAATATATT
1 TATAATATAAATAAATT
95133461 TATAATATAAATAAATT
1 TATAATATAAATAAATT
95133478 TATAAT
1 TATAAT
95133484 TTTTTCCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
TATAATATAAATAAATT
Found at i:95133495 original size:27 final size:30
Alignment explanation
Indices: 95133455--95133536 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 30
95133445 ATAATATCAA
**
95133455 TATATTTATAATATAAATAAATTTAT-AAT
1 TATATTTCCAATATAAATAAATTTATAAAT
*
95133484 T-T-TTTCCAATAT-AAT-GATATTATAAAT
1 TATATTTCCAATATAAATAAAT-TTATAAAT
95133511 TATATTTCCAATATAAATAAATTTAT
1 TATATTTCCAATATAAATAAATTTAT
95133537 CATATAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
25 2 0.05
26 7 0.16
27 12 0.28
28 2 0.05
29 11 0.26
30 7 0.16
31 2 0.05
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.48
Consensus pattern (30 bp):
TATATTTCCAATATAAATAAATTTATAAAT
Found at i:95141511 original size:12 final size:13
Alignment explanation
Indices: 95141488--95141516 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
95141478 CATCAAATCA
95141488 AAATTGATATATT
1 AAATTGATATATT
95141501 AAATT-ATATATT
1 AAATTGATATATT
95141513 AAAT
1 AAAT
95141517 CAAAATTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
AAATTGATATATT
Found at i:95142822 original size:43 final size:43
Alignment explanation
Indices: 95142644--95142802 Score: 275
Period size: 43 Copynumber: 3.7 Consensus size: 43
95142634 AAAAAAATGT
95142644 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
95142687 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
* *
95142730 CGCTAAATGTCAAGGCTTTTAGAGGCGTTT-TGGGTAAAAGCGC
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG-AAAAGCGC
*
95142773 CTCTAAAGGTCAAGGCTTTTAGCGGCGTTT
1 CGCTAAAGGTCAAGGCTTTTAGCGGCGTTT
95142803 TTTTTACAAA
Statistics
Matches: 110, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
42 4 0.04
43 106 0.96
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (43 bp):
CGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGC
Found at i:95143874 original size:16 final size:17
Alignment explanation
Indices: 95143837--95143876 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
95143827 AGAATATTAT
*
95143837 TTAATAATAGAAAGTTA
1 TTAATAATAGAAAGTAA
*
95143854 TTAATAATTGAAAG-AA
1 TTAATAATAGAAAGTAA
95143870 TTAATAA
1 TTAATAA
95143877 ATTCATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (17 bp):
TTAATAATAGAAAGTAA
Found at i:95146820 original size:46 final size:44
Alignment explanation
Indices: 95146761--95146875 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
95146751 ACAGGACAGA
* *
95146761 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
95146807 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
95146851 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
95146876 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:95146856 original size:44 final size:45
Alignment explanation
Indices: 95146761--95146894 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
95146751 ACAGGACAGA
* *
95146761 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
95146807 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
95146851 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
95146895 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:95152758 original size:46 final size:44
Alignment explanation
Indices: 95152699--95152813 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
95152689 ACAGGACAGA
* *
95152699 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
95152745 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
95152789 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
95152814 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:95152794 original size:44 final size:45
Alignment explanation
Indices: 95152699--95152832 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
95152689 ACAGGACAGA
* *
95152699 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
95152745 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
95152789 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
95152833 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:95158183 original size:134 final size:134
Alignment explanation
Indices: 95157913--95158151 Score: 369
Period size: 134 Copynumber: 1.8 Consensus size: 134
95157903 AACAAGGCAG
95157913 CAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACATAAGTTGGATAGAAACATGAAAAAC
1 CAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACATAAGTTGGATAGAAACATGAAAAAC
* * * * *
95157978 AGACCAAAAGAACATTTAAATAACCAAAATATAACAACTTTATTATATAAAACGTGAGCAACACG
66 AGACCAAAAGAACATCTAAATAACCAAAATAGAACAACATTATTATATAAAACATGAGAAACACG
*
95158043 ACAA
131 AAAA
95158047 CAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACATAAGTTGGATAGAAACATG-AAAAC
1 CAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACATAAGTTGGATAGAAACATGAAAAAC
* *
95158111 AGACCAAAA-AACATCTAAA-AA-CAAAATGGAATCACCATTAT
66 AGACCAAAAGAACATCTAAATAACCAAAATAGAA-CAACATTAT
95158152 ATGTAAGCAT
Statistics
Matches: 99, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
130 8 0.08
131 9 0.09
132 9 0.09
133 14 0.14
134 59 0.60
ACGTcount: A:0.51, C:0.19, G:0.09, T:0.21
Consensus pattern (134 bp):
CAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACATAAGTTGGATAGAAACATGAAAAAC
AGACCAAAAGAACATCTAAATAACCAAAATAGAACAACATTATTATATAAAACATGAGAAACACG
AAAA
Found at i:95160894 original size:12 final size:12
Alignment explanation
Indices: 95160877--95160925 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
95160867 CCACTTTCCA
95160877 TATATATATATT
1 TATATATATATT
95160889 TATATATAT-TT
1 TATATATATATT
*
95160900 TA-AAATAATATT
1 TATATAT-ATATT
*
95160912 T-TCTATATATT
1 TATATATATATT
95160923 TAT
1 TAT
95160926 CTTATATACA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
10 3 0.10
11 12 0.40
12 15 0.50
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (12 bp):
TATATATATATT
Found at i:95162139 original size:41 final size:41
Alignment explanation
Indices: 95162016--95162115 Score: 182
Period size: 41 Copynumber: 2.4 Consensus size: 41
95162006 GGGGTTATGG
95162016 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
* *
95162057 GCTTATTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
1 GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
95162098 GGTTTTTAGCGGCGTTTT
1 GGTTTTTAGCGGCGTTTT
95162116 TTTTGGAACG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (41 bp):
GGTTTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGCTCT
Found at i:95163421 original size:27 final size:23
Alignment explanation
Indices: 95163375--95163422 Score: 60
Period size: 27 Copynumber: 1.9 Consensus size: 23
95163365 ATTAAGACAA
95163375 CCAAATAACAATAGAAATTAAAT
1 CCAAATAACAATAGAAATTAAAT
95163398 CCAATATAAGCAATCAGAAGATTAA
1 CCAA-ATAA-CAAT-AGAA-ATTAA
95163423 CTCACTTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 4 0.19
25 4 0.19
26 4 0.19
27 5 0.24
ACGTcount: A:0.56, C:0.15, G:0.08, T:0.21
Consensus pattern (23 bp):
CCAAATAACAATAGAAATTAAAT
Found at i:95170906 original size:493 final size:488
Alignment explanation
Indices: 95169739--95174968 Score: 6106
Period size: 493 Copynumber: 10.8 Consensus size: 488
95169729 TTCATCACCC
* *
95169739 AACAAACCCAACCATGTGTAATGCATAATTGAATATCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
95169804 ACAATATCGGTAAGAAAATCATATCAATCATGTAGCATAGCAAGCTAAACAG--T---ACAGTAA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGAACAGTAA
** * * *
95169864 CAGTAACAATTGTTTAATCAACATAATTTAGTATAATAGTTTTGGAGACACGATTTTTATATAAT
131 CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* * *
95169929 CACTATTAACAATAGCAATCAAGACATGTTTATATGCAACCAATTTCATATCAATCACGATCATA
196 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
* * * * *
95169994 TAATCAATTAATCAGGAAT-AAGGACTTAATCATGACTTTAGGGCTCTAACATGTAGGGAATTAT
261 TAATCAATTAATCAAGAATGAA-GTCTTAATCATGATTTTAGGGCTCTAACATGTAAGGAATTAC
* * * *
95170058 TCATGGACTAAAATGAAACATATCGTAAAATAGTGGAGTAACAGTGGAATAGGGGCTCACACGAC
325 TCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGC
* * * * * * *
95170123 TGTGTGGGGAGGTCGTGTGAGGCGGTTTAGACTATGTTACTAAGTTACACGGCTGTGT-A---A-
390 TGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCAC
* *
95170183 ----ACCATGTGCAAATAAAAAAAAATTTCCCAA
455 TGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* *
95170213 AACAAACCCAACCACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAAT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
95170278 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAATAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGT---AT---AG-A
* * * *
95170343 ACAGTAATAGTAAAAATTGTTTAATCAACATGCTTTAGTATAATAGTTTTGGAGACACGATTTCC
124 ACAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * *
95170408 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGGAACCAATTTCATATCAATTAT
189 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCAC
* *
95170473 GATCATATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTATGGCTCTAACATGTAAGG
254 GATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAGG
* * * * * *
95170538 AATTATTTAGGGATTAAAATGAAACATCTCGTAAAATAATGGAGAAACAGTGGAATA-GGGCTCA
319 AATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCA
* * * * *
95170602 CATGGCTGTGTGAAGAGGCCGTGTGAGGGGGTTTGGACCGTGTTACTGAGTTACATGGCCATGTA
384 CACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTA
* * *
95170667 ACTCATTGTGACCATGTGCAAAT-AAAAAAAATTTCTCAA
449 ACTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * *
95170706 AACAAACCTAACCATGTGTAATGCATATTTGAATACCAATCATGTGGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95170771 -CTAATATAGGTAAGAGATTAATATCAATCATGTAGCATAGCATGCTAACCAGTATAGCAACAGT
66 AC-AATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAG-AACAG-
* * * * *
95170835 AATAATAATAGTAACAATTTTTTAATCAACATGCTTTAGTATAAAAGTTTTGAAGACAGGATTTT
128 -----TAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTT
* * * * * * *
95170900 CATGTAATTACTATTAACAATACCAATCAAGGCACGTTTACATCCGACTAATTTCATATCAATCA
188 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* * * * *
95170965 CGATCATATAATCAATTAATCATGAATGAAGTTTTAATTATGATTTTAGGGCTCAAACATAT-AG
253 CGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAG
** * ** *
95171029 GAAATTACTCATTGACTAAAATGAAACATATCGCAAAATAGTGGAAAAACAGTACAATAGGGGTT
318 G-AATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCT
* * * *
95171094 CACACGG-TAGTGT-AGGGAGACTGTGTG-GGGGGTTTAGACCGTGTTACTGAGTTACATGACCG
382 CACACGGCT-GTGTGA-GGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCG
* *
95171156 TGTAACTCACTATGACTATGTAAATCATTGTGACCATGTGCAAATCGAAAAAAATTTCCCAA
445 TGT-A---AC--T--C-------A-C--TGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* *
95171218 AACAAACCCAACCATGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAAT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
95171283 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCT--AC---ATAGTACAGTAA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGAACAGTAA
* * * *
95171343 CAGTAATAATTGTTTAATTAACATGCTTTAGTATAACAGTTTTAGAGACACAATTTTCATGTAAT
131 CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* * * *
95171408 CACTATTAACAATAACAATCAAGGCATGCTTATATGCAACTAATTTCATATCGATCACGATCATA
196 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
* * *
95171473 TAATCAATTAATCAGGAATGAAATCTTAATCATAATTTTAGGGCTCTAACATGT-AGAGAATTAC
261 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAG-GAATTAC
** * *
95171537 TCTA-GGAAAAAAATGAAACATATCGCAAAATAATGGAGAAACAATGGAATAGGGGCTCACACGG
325 TC-AGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGG
* * *
95171601 TTGTGTGGGGAGGCCGTGTGAGGGGGTTTAGA-CA-G----T-A---ACATGGTCGTGTAACTCA
389 CTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCA
* * *
95171656 CTTTGACTGTGTGCAAATCAAAAATAACTTT-CCAA
454 CTGTGACCGTGTGCAAATCAAAAA-AAATTTCCCAA
* * * * *
95171691 AACAAACCCAACTACGTGTAATGCATAATTGAATAACAATCATGCAGGATATCATGCTACACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * *
95171756 AAAATATCGGTAAAAGAATCATATTAATCATTTAGCATAGCACGCTAAACAG--T---ACAGTAA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGAACAGTAA
* * *
95171816 CAGTAACAATTGTTTAATCAACATTCTTTAGTATAACTGTTTTGGATACACGATTTTCATGTAAT
131 CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
*
95171881 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGAACATA
196 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
* * *
95171946 TAATCAATTAATCAGGAATGAAGTCTTAATCATAATTTTAGGGCTCTAACATGTAGGGAATTACT
261 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAGGAATTACT
* * * * * *
95172011 TAGGGGCTAAAATGATACATATAGTAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCT
326 CAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCT
* * * * * *
95172076 GTGTGGGGAGGCCGTGTGAGAGGGTTTAGACCATGTTACTCAGTTACATAGCTGTGTAACTCACC
391 GTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACT
*
95172141 GTGACTGTGTGCAAAT-AAAAAAAA-TTCCCAA
456 GTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * *
95172172 AATAAACCCAACCACGTGTAATGCATAACTGAATACCAAACATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
95172237 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAAACAG--T---ACGGCAA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGAACAGTAA
*
95172297 CAGTAACAATTGTTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
131 CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* * * *
95172362 CACTATTAACAATAGCAATCAAAGTATACTTACATGCAACCAATTTCATATCAATCACAATCATA
196 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
* *
95172427 TAATCAATTAATCAAGAATGAAGACTTAATCA-CA----A------T--CA--T-AGCGAATTAC
261 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAG-GAATTAC
* * * * *
95172476 TCAGGGACCAAAATGAAACATATCGCAAAATAGTAGAGAAACAGTGGAATAAGGACTCACACGAC
325 TCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGC
* * * * * *
95172541 TGTG-GCGGGAAGCCGTGAGAGGGGATTTAGACCATGATACTGAGTTACATAGCCGTGTAACTCA
390 TGTGTG-AGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCA
* * * *
95172605 CTGTGACCGTGTGTAACTCGAAAAAAATTTTCCAA
454 CTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
*
95172640 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCTTGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95172705 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAACGTGCTAAAC----T-GTACAGTAA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGAACAGTAA
* * * *
95172765 CAGTAGCAATTGTTTAATCAACATACTTTAGGATAACAG-TTTAGAGACACGATTTTCATGTAAT
131 CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* * * * * *
95172829 CACTATTAACAATACCAATCAATGCATGCTTACAGGTAACCAATATCATGTCAATCACGATCATA
196 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
* * * *
95172894 TAATCAATTAATCAAGATTGAAGTCTTAATCATGATTTTAGGGCTCTAACATGCAGGGAA-TATT
261 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAGGAATTACT
* * * * * *
95172958 CAGGGACTAAAATGATACATATCACAAAATAATGGAGAAACAATGGAATAGGGGATCACACAGCT
326 CAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCT
* * * *** *
95173023 GTGTGAGGAGGCCGTGTGAGAGGGTTTAGACCATGTTA-GGAGTTACACGGCTAAGTAACTCATT
391 GTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACT
** * *
95173087 GTGATTGTGTGCAAATCGAAAAAAATTTCCTAA
456 GTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * * * *
95173120 AACGAACCTAACCACGTGTAATGCATAACTGAATACCAAACATGTACCATATCATCCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
95173185 ACAATATCAGTAAGAGAATCATATCAATCATGGAGCATAGCATGCTAAACAGTATAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAG-AACAGTA
* * *
95173250 ACAGTAATAATTGTTTAATCAACATGATTTAGTATAACAGTTTTGGAGACACAATTTTCATGTAA
130 ACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAA
* * * * *
95173315 TCACTATTAACAATAGCAATCAAGGCATACTTACATACAACCAATTTCATGTCAATTACGATTAT
195 TCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCAT
* * * *
95173380 ATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTAAGGCTCCAACATGTAGGGAATTAC
260 ATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAGGAATTAC
* * ** * * *
95173445 TTAGGGACTAAAATGAAACATCTTACAAAATAATGGAGAAACAGTAGAATA-GGGCTCACACAGC
325 TCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGC
* * * * * *
95173509 TGTGTGGGGAGGCCGTGTGAGGGGGTTTAGACCGTGTTACTGAGTAACAGGGTCGTGTAACTTAC
390 TGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCAC
*
95173574 TGTGACCGTGTGCAAAT-AGAAAAAATTTCCCAA
455 TGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * **
95173607 AACAAACCCAACCACTTGTAATGTATTTTTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
95173672 ACAATATAGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAG-AACAGTA
* * *
95173737 ACAGTAATAGTAACAATTGTTTAATCAACATGTTTTAGTATAACAGTTTTGAATG-CATGATTTT
130 AC------AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGA-GACACGATTTT
* * * * * *
95173801 TATGTAATTACTATTAACAATAGCAACCAAGCCATGCTTATATGTAACCAATTTCATATCAATCA
188 CATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCA
* * *
95173866 TGATCCTATAATCAATTAATCACA-AATGATA-TTTTAATCATGATTTTAGGGCTCTAACATGTA
253 CGATCATATAATCAATTAATCA-AGAATGA-AGTCTTAATCATGATTTTAGGGCTCTAACATGTA
* * * * * * *
95173929 AAGAATTACTCATGAAATAAAATGAAACATATCACAAAATAGTGGAGAAACAGTGTAATAGGGGT
316 AGGAATTACTCAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGC
* * * * * * *
95173994 TCATACGGTTGTCTTAAGAGGCCGTGTGAAGGGGTTTAGACCGTGTTAC------ACGAT---CG
381 TCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTAC-ATGGCCG
* * * *
95174050 AGTAACTCACTGCGACCATGTGCAAAT-AAAAAAAAATTCCCAA
445 TGTAACTCACTGTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * * * *
95174093 CATAAACTCAACCACGTGTAATGCATAACTGAATACCAATCATGTAGCATATCAAGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* ** * *
95174158 ACAATATCGGTAAGCGAATCATATCAATCATACAGCATAGCATCCT--A-A--ATAGTACAGTAA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGAACAGTAA
*
95174218 CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGATTTGGAGACACGATTTTCATGTAAT
131 CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* * * *
95174283 TACTGTTAACAATAGCAATCAAGGCATGCTTACATGTAACCAATTTCATGTCAATCACGATCATA
196 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
*
95174348 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACT
261 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAGGAATTACT
* ** * * * * *
95174413 TAGGGAAAAAAATTATACATATCGTAAAATAGTGCAGAAACAGTAGAATAGGGGCTCACACGGCT
326 CAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCT
* *
95174478 GTGTGAGGAGGCCTTGTGAGGGGGTTTAGACTATGTTACTGAGTTACATGGCCGTGTAACTCACT
391 GTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACT
* * * *
95174543 GTGACCGTATGCAAATCGAAAATAACTTCCCAA
456 GTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
* * * *
95174576 AATAAACCCAACTACGTGTAATGCATAATTGAATTA-CAAACATGTAGCATATCATGTTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAA-TACCAATCATGTAGCATATCATGCTAAACAG
* * * *
95174640 TACATTATCGATAAGCGAATCATATCAATCATGTAGCATAGCATACTAAACAGTGTAGTAACAGT
65 TACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACA--GTA-T---AG-
95174705 AACAGTAACAGTAACGGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACAC
123 AACAGTAAC----A--GTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACAC
* * * * *
95174770 GATTTTCATGTAATCACTATTGACAATACCAGTCAAAGCATGCTTACATGTAACCAATTTCATAT
182 GATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATAT
* *
95174835 CAATCACGATCATATAATCAATTAATCAAGAATGAAGGCTTAATCATGATTTTAAGGCTCTAACA
247 CAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACA
* * * * ** *
95174900 T-TTAGGTAATTACTCAGGGACTAAAATGATAGATATC-CTAAAATTGTAAAGAAACAATGGAAT
312 TGTAAGG-AATTACTCAGGGACTAAAATGAAACATATCGC-AAAATAGTGGAGAAACAGTGGAAT
95174963 AAGGGG
375 -AGGGG
95174969 TTTATACCGT
Statistics
Matches: 4077, Mismatches: 525, Indels: 280
0.84 0.11 0.06
Matches are distributed among these distances:
465 2 0.00
466 132 0.03
467 117 0.03
468 156 0.04
470 1 0.00
472 2 0.00
473 392 0.10
474 375 0.09
475 4 0.00
476 3 0.00
478 1 0.00
479 4 0.00
480 167 0.04
481 359 0.09
482 34 0.01
483 142 0.03
484 4 0.00
485 61 0.01
486 401 0.10
487 324 0.08
488 80 0.02
489 2 0.00
490 4 0.00
491 11 0.00
492 4 0.00
493 574 0.14
494 87 0.02
495 9 0.00
497 2 0.00
499 3 0.00
500 242 0.06
501 229 0.06
502 5 0.00
506 4 0.00
507 4 0.00
508 1 0.00
510 1 0.00
511 17 0.00
512 116 0.03
513 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (488 bp):
AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGAACAGTAA
CAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAAGGAATTACT
CAGGGACTAAAATGAAACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCT
GTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACT
GTGACCGTGTGCAAATCAAAAAAAATTTCCCAA
Found at i:95174707 original size:6 final size:6
Alignment explanation
Indices: 95174696--95174726 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
95174686 TAAACAGTGT
*
95174696 AGTAAC AGTAAC AGTAAC AGTAAC GGTAAC A
1 AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC A
95174727 ATTGTTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (6 bp):
AGTAAC
Found at i:95175224 original size:949 final size:938
Alignment explanation
Indices: 95169739--95180400 Score: 10040
Period size: 949 Copynumber: 11.1 Consensus size: 938
95169729 TTCATCACCC
* *
95169739 AACAAACCCAACCATGTGTAATGCATAATTGAATATCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
95169804 ACAATATCGGTAAGAAAATCATATCAATCATGTAGCATAGC--A-AGCTAAACAGTACAGTAAC-
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCTAACAGCTAAACAGTACAGTAACA
** * * *
95169865 -AGTAACAATTGTTTAATCAACATAATTTAGTATAATAGTTTTGGAGACACGATTTTTATATAAT
131 TAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* *
95169929 CACTATTAACAATAGCAATC-AAGACATGTTTATATGCAACCAATTTCATATCAATCACGATCAT
196 CACTATTAACAATAGCAATCAAAG-CATGCTTACATGCAACCAATTTCATATCAATCACGATCAT
* * *
95169993 ATAATCAATTAATCAGGAAT-AAGGACTTAATCATGACTTTAGGGCTCTAACATGTAGGGAATTA
260 ATAATCAATTAATCAAGAATGAA-GTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTA
* * * ** ** * * * * *
95170057 TTCATGGACTAAAATGAAACATATCGTAAA-ATAGT-GGAGTAACAGTGGA-AT-AGGGGCTCAC
324 CTCAGGGACTAAAATGATACATATCCAAAATATAGTAATAGAAACAATGGAGATAAGGGGTTTAT
* * * **
95170118 ACGACTGTGTGGGGAGGTCGTGTGAGGCGGTTTAGACTATGTTACTAAGT-TACAC-GGCTGTGT
389 AC--C-GTGT---TA---C---T-A---AG-TT--AC-A---TACT-CGTGTA-ACTCACTGTG-
* * * *
95170181 AAACCATGTGCAAATAAAAAAAAATTTCCCAAAACAAACCCAACCACATGTAATGCATAATTGAA
428 --ACCGTGTGCAAATCAAAAAAAA-TTCCCAAAACAAACCTAACCACGTGTAATGCATAATTGAA
* *
95170246 TACCAATCATGTAGCATATCATGCTAAACAATACAATATAGGTAAGAGAATCATATCAATCATGT
490 TACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCATGT
* *
95170311 AGCATAGCAAGCTAAACAGTACAATAACAGTAACAGTAATAGTAAAAATTGTTTAATCAACATGC
555 AGCATAGCATGCTAAACAGT---AT---AGTAAC------AGTAACAATTGTTTAATCAACATGC
* * *
95170376 TTTAGTATAATAGTTTTGGAGACACGATTTCCATGTAATCACTATTAACAATAGCAATCAAGGCA
608 TTTAGTATAACAGTTTTGGAGACAAGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCA
* * * *
95170441 TGCTTACATGGAACCAATTTCATATCAATTATGATCATATAATCAATTAATCAATAATGAAGTCT
673 TGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCT
* * * * * * *
95170506 TAATCATGATTTTATGGCTCTAACATGTAAGGAATTATTTAGGGATTAAAATGAAACATCTCGTA
738 TAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGCA
* * *
95170571 AAATAATGGAGAAACAGTGGAATA-GGGCTCACATGGCTGTGTGAAGAGGCCGTGTGAGGGGGTT
803 AAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTT
* * * * * **
95170635 TGGACCGTGTTACTGAGTTACATGGCCATGTAACTCATTGTGACCATGTGCAAATAAAAAAAATT
868 TAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAATT
*
95170700 TCTCAA
933 TCCCAA
* * * *
95170706 AACAAACCTAACCATGTGTAATGCATATTTGAATACCAATCATGTGGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95170771 -CTAATATAGGTAAGAGATTAATATCAATCATGTAGCATAGCATGCTAACCAGTATAGCAACAGT
66 AC-AATATCGGTAAGAGAATCATATCAATCATGTAGCAT---A-GCTAA-CAG-CTA--AACAGT
* * * * *
95170835 A-A-TAATAATAGTAACAATTTTTTAATCAACATGCTTTAGTATAAAAGTTTTGAAGACAGGATT
122 ACAGTAA-CATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATT
* * * * * * * *
95170898 TTCATGTAATTACTATTAACAATACCAATCAAGGCACGTTTACATCCGACTAATTTCATATCAAT
186 TTCATGTAATCACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAAT
* * * * *
95170963 CACGATCATATAATCAATTAATCATGAATGAAGTTTTAATTATGATTTTAGGGCTCAAACATATA
251 CACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTA
* ** *
95171028 GGAAATTACTCATTGACTAAAATGAAACATATCGCAAAATAGTGGAAAAACAGTACAATAGGGGT
316 GGGAATTACTCAGGGACTAAAATGATACATATC-CAAAATA-T--------AGT--AATA---G-
* * ** * *
95171093 TCACACGGTAGTGTAGGGAGACTGTGTGGGGGGTTTAGACCGTGTTACTGAGTTACATGAC-CGT
365 --AAAC---A----ATGGAGA-----TAAGGGGTTTATACCGTGTTACTAAGTTACAT-ACTCGT
* *
95171157 GTAACTCACTATGACTATGTAAATCATTGTGACCATGTGCAAATCGAAAAAAATTTCCCAAAACA
415 GT-A---AC--T--C-------A-C--TGTGACCGTGTGCAAATC-AAAAAAAATTCCCAAAACA
* * *
95171222 AACCCAACCATGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAATACAA
461 AACCTAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAA
* * * *
95171287 TATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTACATAGTACAGTAACAGTAATAA
526 TATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTAACAA
* *
95171352 TTGTTTAATTAACATGCTTTAGTATAACAGTTTTAGAGACACA-ATTTTCATGTAATCACTATTA
591 TTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACA-AGATTTTCATGTAATCACTATTA
* * * *
95171416 ACAATAACAATCAAGGCATGCTTATATGCAACTAATTTCATATCGATCACGATCATATAATCAAT
655 ACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAAT
* * * * *
95171481 TAATCAGGAATGAAATCTTAATCATAATTTTAGGGCTCTAACATGTAGAGAATTACTCTA-GGAA
720 TAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACT-TAGGGAC
* * * * * *
95171545 AAAAATGAAACATATCGCAAAATAATGGAGAAACAATGGAATAGGGGCTCACACGGTTGTGTGGG
784 TAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTGAG
* * *
95171610 GAGGCCGTGTGAGGGGGTTTAGA-CA-G----T-A---ACATGGTCGTGTAACTCACTTTGACTG
849 GAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGACCG
*
95171665 TGTGCAAATCAAAAATAACTTT-CCAA
914 TGTGCAAATCGAAAA-AA-TTTCCCAA
* * * * *
95171691 AACAAACCCAACTACGTGTAATGCATAATTGAATAACAATCATGCAGGATATCATGCTACACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95171756 AAAATATCGGTAAAAGAATCATATTAATCATTTAGCATAGC--AC-GCTAAACAGTACAGTAAC-
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCTAACAGCTAAACAGTACAGTAACA
* * *
95171817 -AGTAACAATTGTTTAATCAACATTCTTTAGTATAACTGTTTTGGATACACGATTTTCATGTAAT
131 TAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* *
95171881 CACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGAACATA
196 CACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
* *
95171946 TAATCAATTAATCAGGAATGAAGTCTTAATCATAATTTTAGGGCTCTAACATGTAGGGAATTACT
261 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACT
* * ** * *
95172011 TAGGGGCTAAAATGATACATATAGTAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCT
326 CAGGGACTAAAATGATACATAT-CCAAAATA-T--AG-TA-A-TAGAA-A------CA-A-----
* * * * *
95172076 GTGTGGGGAGGCCGTGTGAGAGGGTTTAGACCATGTTACTCAGTTACATAGCT-GTGTAACTCAC
371 ---T--GGA----G-ATAAG-GGGTTTATACCGTGTTACTAAGTTACATA-CTCGTGTAACTCAC
* * * * *
95172140 CGTGACTGTGTGCAAAT-AAAAAAAATTCCCAAAATAAACCCAACCACGTGTAATGCATAACTGA
424 TGTGACCGTGTGCAAATCAAAAAAAATTCCCAAAACAAACCTAACCACGTGTAATGCATAATTGA
*
95172204 ATACCAAACATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCATG
489 ATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCATG
* ** * *
95172269 TAGCATAGCACGCTAAACAGTACGGCAACAGTAACAATTGTTTAATCAATATGCTTTAGTATAAC
554 TAGCATAGCATGCTAAACAGTATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAAC
* * * *
95172334 AGTTTTGGAGACACGATTTTCATGTAATCACTATTAACAATAGCAATCAAAGTATACTTACATGC
619 AGTTTTGGAGACAAGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGC
* * *
95172399 AACCAATTTCATATCAATCACAATCATATAATCAATTAATCAAGAATGAAGACTTAATCA-CA--
684 AACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATT
* * * * *
95172461 --A------T--CA--TAGCGAATTACTCAGGGACCAAAATGAAACATATCGCAAAATAGTAGAG
749 TTAGGGCTCTAACATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGCAAAATAGTGGAG
* * * * * * * *
95172514 AAACAGTGGAATAAGGACTCACACGACTGTG-GCGGGAAGCCGTGAGAGGGGATTTAGACCATGA
814 AAACAGTGGAATAGGGGCTCACACGGCTGTGTG-AGGAGGCCGTGTGAGGGGGTTTAGACCATGT
* * * *
95172578 TACTGAGTTACATAGCCGTGTAACTCACTGTGACCGTGTGTAACTCGAAAAAAATTTTCCAA
878 TACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTGTGCAAATCG-AAAAAATTTCCCAA
*
95172640 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCTTGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
95172705 ACAATATCAGTAAGAGAATCATATCAATCATGTAGC--A--TAACGTGCTAAACTGTACAGTAAC
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCTAAC-AGCTAAACAGTACAGTAAC
* * * *
95172766 --AGTAGCAATTGTTTAATCAACATACTTTAGGATAACAG-TTTAGAGACACGATTTTCATGTAA
130 ATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAA
* * * * * *
95172828 TCACTATTAACAATACCAATCAATGCATGCTTACAGGTAACCAATATCATGTCAATCACGATCAT
195 TCACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAATCACGATCAT
* * *
95172893 ATAATCAATTAATCAAGATTGAAGTCTTAATCATGATTTTAGGGCTCTAACATGCAGGGAA-TAT
260 ATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTAC
95172957 TCAGGGACTAAAATGATACATATCACAAAATAATGGAGAAACAATGGAATAGGGGATCACACAGC
325 TCAGGGACTAAAATGATACATATC-CAAAAT-AT--AG------T--AATA---GA--A-ACA--
* * * * ** ** **
95173022 TGTGTGAGGAGGCCGTGTGAGAGGGTTTAGACCATGTTA-GGAGTTACACGGCT-AAGTAACTCA
370 -ATG-GA-GA-------TAAG-GGGTTTATACCGTGTTACTAAGTTACA-TACTCGTGTAACTCA
* ** * * * *
95173085 TTGTGATTGTGTGCAAATCGAAAAAAATTTCCTAAAACGAACCTAACCACGTGTAATGCATAACT
423 CTGTGACCGTGTGCAAATC-AAAAAAAATTCCCAAAACAAACCTAACCACGTGTAATGCATAATT
* * * *
95173150 GAATACCAAACATGTACCATATCATCCTAAACAGTACAATATCAGTAAGAGAATCATATCAATCA
487 GAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCA
* *
95173215 TGGAGCATAGCATGCTAAACAGTATAGTAACAGTAACAGTAATAATTGTTTAATCAACATGATTT
552 TGTAGCATAGCATGCTAAACAGTATAGTAACAGTAAC------AATTGTTTAATCAACATGCTTT
*
95173280 AGTATAACAGTTTTGGAGACACA-ATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATA
611 AGTATAACAGTTTTGGAGACA-AGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATG
* * * * *
95173344 CTTACATACAACCAATTTCATGTCAATTACGATTATATAATCAATTAATCAATAATGAAGTCTTA
675 CTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTA
* * * * **
95173409 ATCATGATTTTAAGGCTCCAACATGTAGGGAATTACTTAGGGACTAAAATGAAACATCTTACAAA
740 ATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGCAAA
* * * *
95173474 ATAATGGAGAAACAGTAGAATA-GGGCTCACACAGCTGTGTGGGGAGGCCGTGTGAGGGGGTTTA
805 ATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTA
* * * * * *
95173538 GACCGTGTTACTGAGTAACAGGGTCGTGTAACTTACTGTGACCGTGTGCAAATAGAAAAAATTTC
870 GACCATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAATTTC
95173603 CCAA
935 CCAA
* * **
95173607 AACAAACCCAACCACTTGTAATGTATTTTTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
95173672 ACAATATAGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCAT---A-GCT-AACAG-CTA--AACAGT-
* * *
95173737 ACAGT-A-ATAGTAACAATTGTTTAATCAACATGTTTTAGTATAACAGTTTTGAATG-CATGATT
122 ACAGTAACATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGA-GACACGATT
* * * * *
95173799 TTTATGTAATTACTATTAACAATAGCAA-CCAAGCCATGCTTATATGTAACCAATTTCATATCAA
186 TTCATGTAATCACTATTAACAATAGCAATCAAAG-CATGCTTACATGCAACCAATTTCATATCAA
* * *
95173863 TCATGATCCTATAATCAATTAATCACA-AATGATA-TTTTAATCATGATTTTAGGGCTCTAACAT
250 TCACGATCATATAATCAATTAATCA-AGAATGA-AGTCTTAATCATGATTTTAGGGCTCTAACAT
** * * * * * * ***
95173926 GTAAAGAATTACTCATGAAATAAAATGAAACATATCACAAAATAGTGGAGAAACAG-TGTAATAG
313 GTAGGGAATTACTCAGGGACTAAAATGATACATATC-CAAAATA-T--AGTAATAGAAACAAT-G
* * * * * * * *
95173990 GGGTTCATACGGTTGTCTTAAGAGGCCGTGTGAAGGGGTTTAGACCGTGTTACACGA-TCGAGTA
373 GAG---ATAAGG-GGT-TT-ATA--CCGTGT-TA-----CTA-A----GTTACA-TACTCGTGTA
* * * * *
95174054 ACTCACTGCGACCATGTGCAAATAAAAAAAAATTCCCAACATAAA-CTCAACCACGTGTAATGCA
418 ACTCACTGTGACCGTGTGCAAATCAAAAAAAATTCCCAAAACAAACCT-AACCACGTGTAATGCA
* * * *
95174118 TAACTGAATACCAATCATGTAGCATATCAAGCTAAATAGTACAATATCGGTAAGCGAATCATATC
482 TAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATC
** * * *
95174183 AATCATACAGCATAGCATCCTAAATAGTACAGTAACAGTAACAATTGTTTAATCAACATGCTTTA
547 AATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTAACAATTGTTTAATCAACATGCTTTA
* * * *
95174248 GTATAACAGATTTGGAGACACGATTTTCATGTAATTACTGTTAACAATAGCAATCAAGGCATGCT
612 GTATAACAGTTTTGGAGACAAGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCT
* *
95174313 TACATGTAACCAATTTCATGTCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAAT
677 TACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAAT
** * *
95174378 CATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGGAAAAAAATTATACATATCGTAAAAT
742 CATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGCAAAAT
* * *
95174443 AGTGCAGAAACAGTAGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCTTGTGAGGGGGTTTAGA
807 AGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGA
* * *
95174508 CTATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTATGCAAATCGAAAATAACTTCC
872 CCATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTGTGCAAATCGAAAA-AATTTCC
95174573 CAA
936 CAA
* * * *
95174576 AATAAACCCAACTACGTGTAATGCATAATTGAATTA-CAAACATGTAGCATATCATGTTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAA-TACCAATCATGTAGCATATCATGCTAAACAG
* * * *
95174640 TACATTATCGATAAGCGAATCATATCAATCATGTAGCATAGCATACTAAACAGTGTAGTAACAGT
65 TACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAG----CT-AACAG-CTA--AACAGT
95174705 AACAGTAACAGTAACGGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACAC
122 -ACAGTAACA-T-A--GTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACAC
* * * *
95174770 GATTTTCATGTAATCACTATTGACAATACCAGTCAAAGCATGCTTACATGTAACCAATTTCATAT
182 GATTTTCATGTAATCACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATAT
* *
95174835 CAATCACGATCATATAATCAATTAATCAAGAATGAAGGCTTAATCATGATTTTAAGGCTCTAACA
247 CAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACA
* * *
95174900 TTTAGGTAATTACTCAGGGACTAAAATGATAGATATCCTAAAAT-T-GTAA-AGAAACAATGGA-
312 TGTAGGGAATTACTCAGGGACTAAAATGATACATATCC-AAAATATAGTAATAGAAACAATGGAG
*
95174961 ATAAGGGGTTTATACCGTATTACTAAGTTACATACTCGTGTAACTCACTGTGACCGTGTGCAAAT
376 ATAAGGGGTTTATACCGTGTTACTAAGTTACATACTCGTGTAACTCACTGTGACCGTGTGCAAAT
* * * *
95175026 CAAAAAAAATTCCCAAAACAAACCTAACAACGTGTAATGCATAATTTAATACCAGTCATATAGCA
441 CAAAAAAAATTCCCAAAACAAACCTAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCA
* * *
95175091 TATCATGCTAAATAGTACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAACATGCTAAA
506 TATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAA
* *
95175156 CAGTATAGTAATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGGTTTGGAGACAAGAT
571 CAGTATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACAAGAT
* * * *
95175221 TTTCATGTAATCATTATTAACAATAGCAACCATGGCATGCTTACATGTAACCAATTTCATATCAA
636 TTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAA
* * *
95175286 TCACGATCATATAACCAATTAATCAAGAATGAAGTCTTAATCATAATTTTAGGGCTCTAACATGC
701 TCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGT
** ** * * * *
95175351 ATAGAATTTTTTAAGGACTAAAATGATACATATCGCAAAATAATGGAAAAACAGTAGAATAGGGG
766 AGGGAATTACTTAGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGG
* * * * * ** * * *
95175416 CTCATACAGCTATGT-AGGGAGGCCGTGTGA-GGGATTTAAACTGTATTACTGAGTTATATGGCT
831 CTCACACGGCTGTGTGA-GGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCC
* * **
95175479 GTGTAACTCACTGTGACTGTGTGCAAATTGAAAAAAAAAATCCCAA
895 GTGTAACTCACTGTGACCGTGTGCAAATCG--AAAAAATTTCCCAA
* * * * * *
95175525 AACAAACCTAGCCACTTGTAAGGCATAATTAAATACCAATCATGTAACATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
95175590 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGC--AC-GCTAAACAGTACAGTAATA
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCTAACAGCTAAACAGTACAGTAACA
* *
95175652 GTAACAGTAACAATTGTGTAATCAACATGTTTTAGTATAACAGTTTTGGAGATC-CGATTTTCAT
131 -T---AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGA-CACGATTTTCAT
* * * *
95175716 GTAATCACTATTAACAATAGCAATCAAGGCATGCTTATATGCAACCAATTTCATACCAATCACAA
191 GTAATCACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAATCACGA
* *
95175781 TCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACAGGTAGGGAA
256 TCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAA
* *
95175846 TTTCTCTGGGACTAAAATGATACATATCCCAAAATAGTGGAGATACAGTATAGTAGGGGCACACA
321 TTACTCAGGGACTAAAATGATACATAT-CCAAAATA-T--AG-T--A--ATAG-A-----A-ACA
* * * * * *
95175911 CGGCTGTGTGGGGAGGCCGTGTGAGGGTGTTTAAACCGTGTTACTCAGTTACATAGCT-GTCTAA
370 -------AT--GGA----G-ATAAGGG-GTTTATACCGTGTTACTAAGTTACATA-CTCGTGTAA
* * * * * *
95175975 CTCATTATGACC-TAGTGCAAATCAAAAAATATTTTCCAAAACAAACCCAACCACGTGTAATGCG
419 CTCACTGTGACCGT-GTGCAAATCAAAAAA-AATTCCCAAAACAAACCTAACCACGTGTAATGCA
* *
95176039 TAATTGAATAACAATCATGTAGCATATCATGCTAAACTGTACAATATCGGTAAGAG-A--A-ATC
482 TAATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATC
* * *
95176100 AATCATGTAACATAGCAAAG-TAAACAGTACTA-TAACAGTAACAATTGTTTAATCAATATGCTT
547 AATCATGTAGCATAGC-ATGCTAAACAGTA-TAGTAACAGTAACAATTGTTTAATCAACATGCTT
* ** * * * * *
95176163 TAATATAATTGTTTTAGAGACACGATTTTCATGTAATCACTATTAACAATATCAATCAATGCATA
610 TAGTATAACAGTTTTGGAGACAAGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATG
* * * * * * *
95176228 TTTACATGCAACAAATTTCATACCAATAAAGATCATATAATCAATTAATCAGGAGTGAAGTCTTA
675 CTTACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTA
* * *
95176293 ATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGAACTAAAATGATACATAACCCAAA
740 ATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGCAAA
* * * * * *
95176358 ATAG-GAGAGAAACAGTGGAATAGGGGCTCACAAGCCTGTGTGGGGAGACCTTGTGA-GGGGTCT
805 ATAGTG-GAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTT
* * ** * * *
95176421 AGACCATGTTACTCAGTTACATAGCTATGTAACTTACTATGACCGTATGCAAATCGAAAAACATT
869 AGACCATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAA-ATT
95176486 TCCCAA
933 TCCCAA
* * *
95176492 AACAAAACCAACCACGTGTAAGGCATACTTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95176557 ATAATATCGGTAAGAGAATAATATCAATAATGTAACATAGC--A-AGCTAAACAGTACAGTAAC-
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCTAACAGCTAAACAGTACAGTAACA
95176618 -AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
131 TAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* * * * *
95176682 CACTATTGACAATAGCAATTAAAGCATACTTACACGCAACCAATTTCATATCAATCCCGATCATA
196 CACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
* * *
95176747 TAACCAATTAATCAAGAATGAAGTCTTAATCATAATTTTAGGGCTTTAACATGTAGGGAATTACT
261 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACT
* *
95176812 CAGGGACTAAAATGAAACATATCGTAAAATAGTGGTGAAACAGTGGAATCAGGACTCACACGGCT
326 CAGGGACTAAAATGATACATATC-CAAAATA----T-----AGT--AAT-A-GA---A-A---C-
** * * * *
95176877 GTGTGGGGAGGCCGTGAGGGTGGGTTTATACCGTGTTACTAAGTTACATGCCCGTGTAACTCACT
369 -AAT--GGA-G--AT-A-AG-GGGTTTATACCGTGTTACTAAGTTACATACTCGTGTAACTCACT
* * * * * *
95176942 ATGACCGTGTGCAAATCGAAAAAAATTCCCAAAACAAACCCAACAATGTGAAATGCATAATTGAA
425 GTGACCGTGTGCAAATCAAAAAAAATTCCCAAAACAAACCTAACCACGTGTAATGCATAATTGAA
* * *
95177007 TATCAATCATGTATCATATCATGCTAAACAGTACAATATCAGTAAGAGAATCATATCAATCATGT
490 TACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCATGT
* * *
95177072 AGCATAACATGCTAATCAGTATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAATA
555 AGCATAGCATGCTAAACAGTATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACA
*
95177137 GGTTTGGAGACAAGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCA
620 GTTTTGGAGACAAGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGCA
* * *
95177202 ACCAATTTCATATCAATCACGATCATATAA-CTAATTAATCAGGAATGAAGACTTAATTATGATT
685 ACCAATTTCATATCAATCACGATCATATAATC-AATTAATCAAGAATGAAGTCTTAATCATGATT
* * * * * ** *
95177266 TTATGGCTCTAACATGCATGGAAATA-TTCAGGGGCTAAAATGATACATATCAAAAAATAATGGA
749 TTAGGGCTCTAACATGTAGGGAATTACTT-AGGGACTAAAATGATACATATCGCAAAATAGTGGA
* * * * **
95177330 GAAACAGTGGAATAAGGGCTCACACAGCTGTGT-AGGAAGGCCGTGTGA-AGGGTTTAAACTGTG
813 GAAACAGTGGAATAGGGGCTCACACGGCTGTGTGAGG-AGGCCGTGTGAGGGGGTTTAGACCATG
* * * ** *
95177393 TTACTGAGTTACACGG-C---TAACTCACTATGACTGTGTGCAAACTAAAAAAAAAATTCCC-A
877 TTACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTGTGCAAA-T-CGAAAAAATTTCCCAA
* * *
95177452 AACGAACCCAACCACATGTAATGCATAATTGAATACCAATCATATAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * ** * *
95177517 ATACTATCGGTAA-AGGAATCATATCAAT-AGTGTTTCATAG-T-A-TGCTAAACAATACAGTAA
66 ACAATATCGGTAAGA-GAATCATATCAATCA-TGTAGCATAGCTAACAGCTAAACAGTACAGT-A
* * * *
95177577 TAGTAATAGTAATAATTATGTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCA
128 -A--CATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCA
* * *
95177642 TGTAATCACTATTAACAATAGCAATCAATGCATGCTTACTTGCAACCGATTTCATATCAATCACG
190 TGTAATCACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAATCACG
* * * *
95177707 ATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATAATTTTGGGGCTCTAACAGGTAGGGA
255 ATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGA
* *
95177772 ATTACTCAGGGACTAAAATGATACATATCGCAAAATAATGGAGAAACAGGGGAATAGGGGCTCAC
320 ATTACTCAGGGACTAAAATGATACATATC-CAAAAT-AT--AGTAATA---GAA-A------CA-
* * * * * *
95177837 ACGGCTGTGTGGGGAGGCTGTGTGAGGGGATTTAGACCGTGTTACTCAGTTACATAGTTGTGTAA
370 A--------T--GGA----G-ATAAGGGG-TTTATACCGTGTTACTAAGTTACATACTCGTGTAA
* * * * * *
95177902 CTCACTATGACCGTGTACAAATCGAAAAATATTTTCCAAAACAAACCTAACCACGTGTAATACAT
419 CTCACTGTGACCGTGTGCAAATC-AAAAAAAATTCCCAAAACAAACCTAACCACGTGTAATGCAT
* * * *
95177967 AATTAAATACCAATCATGTAGCATATCATGTTAAATAGTACAATATCGGT-A-A-AA-GATATCA
483 AATTGAATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCA
* * * *
95178028 ATCATGTAACATAGCAAGCTAAACAGTACAGTAACAGTAACAATTGTTTAATCAACGTGCTTTAG
548 ATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAG
* * * * * * *
95178093 TATAACAGTTTTAGAGACACGATTTTCAAGTAATCACTACTGACAATAGCAATTAATGCATGCTT
613 TATAACAGTTTTGGAGACAAGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTT
* * *
95178158 ACATGCAACCAATTTCATAACAATCACGATCATATAACCAATTAATCAATAATGAAGTCTTAATC
678 ACATGCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATC
* *
95178223 ATGATTTTAGAGCTCTAACATGTAGGGAATTAC-T-----C--AAATGATAGATATC-CTAAAAT
743 ATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGC-AAAAT
* * * * * * * * * *
95178279 TGTGAAGAAACAATAGAATAAGGACTCACACGGCTGTGTGCGGAGGTCGTGAGA-GGGGTTTATA
807 AGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGA
* * * * * *
95178343 CCGTGTTTCTAAGTTACAT-ACCTGTGTAACTCACTGTGACCGTGTGCAAAT-AAAAAAAATTCC
872 CCATGTTACTGAGTTACATGGCC-GTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAATTTCC
95178406 CAA
936 CAA
* * * *
95178409 AACAAACCCAACAACGTGTAATGCATAATTTAATACCAGTCATATAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
**
95178474 ACAATATCAATAAGAGAATCATATCAATCATGTAGC--A--TAACATGCTAAACAGTACAGTAAC
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCTAACA-GCTAAACAGTACAGTAAC
*
95178535 --AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGGTTTGGAGACACGATTTTCATGTAA
130 ATAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAA
* * * *
95178598 TCACTATTAATAATATCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATTAT
195 TCACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAATCACGATCAT
* * * * * *
95178663 AT-AGCAATTAATCAGGAATGAAGTTTTAATCATGATTTTAGGGCTCTAACATGCATGGAATTAT
260 ATAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTAC
* *
95178727 TCAGGGTCTAAAATGATACATATTGCAAAATAATGGAGAAACAGTGGAATAGGGACTCACACAGC
325 TCAGGGACTAAAATGATACATA-TCCAAAAT-AT--------AGT--AATA--G----A-A-A-C
* * * * * ** * *
95178792 TTTGAAGGGAGGACGTGTGAGGGGTTTAAACTGTGTTACTGAGTTACACGGCT-TTGTAACTTAC
369 ----AATGGA-GA----TAAGGGGTTTATACCGTGTTACTAAGTTACA-TACTCGTGTAACTCAC
* * * *
95178856 TGTGACTGTGTGCAAAT-AGAAAAAAATTCCCAAAACAAACCTAACCATGTGTAAGGCATAATCG
424 TGTGACCGTGTGCAAATCA-AAAAAAATTCCCAAAACAAACCTAACCACGTGTAATGCATAATTG
* *
95178920 TATACCAATCATTTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCAT
488 AATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCAT
* * * * *
95178985 GTAGTATAGCCTCCTAAACAGTATAGTAACAGTAACCATTGTCTAATCAACATGCTTTAGTATAA
553 GTAGCATAGCATGCTAAACAGTATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAA
*
95179050 CAGTTTTGGAGACACA-ATTATCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACAT
618 CAGTTTTGGAGACA-AGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACAT
* * * *
95179114 GCAATCAATTTCATACCAATCACGATCATATAATCAATTAATCAGGAATAAAGTCTTAATCATGA
682 GCAACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGA
* * * ** * *
95179179 TTTTAGGGCTCTAACTTGTAGGAAATTACTCAATGACTAAAATGATACATATCGAAAAATAGTTG
747 TTTTAGGGCTCTAACATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGCAAAATAGTGG
* * * * *
95179244 AGAAACAGTGGAATATGGGCTCACATGACTGCGTGAAGAGGCCGTGTGAGGGGGTTTAGACCATG
812 AGAAACAGTGGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATG
* * ** * * ** *
95179309 TTACTCAGTTACATAGTTGTGTAACTCACTATAACCGTGTGCAAATCGAAAGACGTTGCCCAA
877 TTACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTGTGCAAATCGAAA-AAATTTCCCAA
* *
95179372 AACAAACCCAACCACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATACTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95179437 ATAATATCGGTAGGAG-A--A-ATCAATCATGTAACATAGC--AGA-CTAAACAGTACAGT-A-A
66 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCTAACAGCTAAACAGTACAGTAACA
* * *
95179493 TAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTTGTGACACAATTTTCATGTAAT
131 TAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
* * * * * * * *
95179558 CATTATTGACAAAATCAATCAAAGCATGCTTCCGTGTATCCAATTTCATATCAATCACGATCATA
196 CACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
* * *
95179623 TAATCAATTAATCAAGAATGAAGTCTTAATCATCATTTTAGGGTTCTAACATGTAAGGAATTACT
261 TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACT
* * * *
95179688 CAGGTACTAAAATGAAACATATCATAAAATAGTGGAGAAACAGTAGAATAAAAAGTCACATGGCT
326 CAGGGACTAAAATGATACATATC-CAAAATA-T--------AGT--AATAGAAA--CA-A----T
* * * * *
95179753 GTGTAGGGAGGCCGTGAGAGGGGGTTTATATCGTGTTATTGAGTTACATGCCCGTGTAACTCACT
372 G-G-A--GA-----T-A-A-GGGGTTTATACCGTGTTACTAAGTTACATACTCGTGTAACTCACT
* *** * * * * *
95179818 ATGACCGTGTGCAAATCGAAAAACTTTTCCCAAAACAAATCGAACAACATGTAATTCATAATTGA
425 GTGACCGTGTGCAAATC-AAAAAAAATTCCCAAAACAAACCTAACCACGTGTAATGCATAATTGA
* *
95179883 ATACCAATCATGTAGCATATTATGCTAAACAGTACAATATCAGTAAGAGAATCATATCAATCATG
489 ATACCAATCATGTAGCATATCATGCTAAACAGTACAATATCGGTAAGAGAATCATATCAATCATG
* *
95179948 TAGCATAGCATGCTAAACAGTATAGTAACAGTTACAATTGTTTAATCAATATGCTTTAGTATAAC
554 TAGCATAGCATGCTAAACAGTATAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAAC
* * * *
95180013 AGTTTTGGAGACATGATTTTCATGTAATCGCTGTTAACAATAGCAATCAATGCATGCTTACATGC
619 AGTTTTGGAGACAAGATTTTCATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGC
* * * *
95180078 AACCAATTTCATATCAATCATGATCATATAATTAATTAATTAAGAATGAAGTCATAATCATGATT
684 AACCAATTTCATATCAATCACGATCATATAATCAATTAATCAAGAATGAAGTCTTAATCATGATT
* * * * * *
95180143 TTAGGCCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAATATATTGCAAAATAGTGGAA
749 TTAGGGCTCTAACATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGCAAAATAGTGGAG
* * ** * * *
95180208 AAACAGTGGAATA-GTGCTCACACGGCTGTGTG-GGAGGCCGTGAGAGGGAATTTAAACCGTGGT
814 AAACAGTGGAATAGGGGCTCACACGGCTGTGTGAGGAGGCCGTGTGAGGGGGTTTAGACCATGTT
* * * *
95180271 ACTGATTTACATGGCTGTGTAACTCACTGTGACTGTGTGCAACTCG-AAAAATTTCCCAA
879 ACTGAGTTACATGGCCGTGTAACTCACTGTGACCGTGTGCAAATCGAAAAAATTTCCCAA
** * *
95180330 AACAAACCCAACCATATGCAATGCATAATTGAATACCAATCATGTACCATAGT-ATGCTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATA-TCATGCTAAACAG
*
95180394 TATAATA
65 TACAATA
95180401 ACAGTAACAA
Statistics
Matches: 8114, Mismatches: 1139, Indels: 893
0.80 0.11 0.09
Matches are distributed among these distances:
937 209 0.03
938 11 0.00
939 91 0.01
940 4 0.00
941 5 0.00
942 3 0.00
943 3 0.00
944 2 0.00
945 4 0.00
946 33 0.00
947 60 0.01
948 413 0.05
949 726 0.09
950 107 0.01
951 125 0.02
952 210 0.03
953 5 0.00
954 423 0.05
955 93 0.01
956 35 0.00
957 113 0.01
958 91 0.01
959 183 0.02
960 441 0.05
961 391 0.05
962 362 0.04
963 308 0.04
964 299 0.04
965 15 0.00
966 280 0.03
967 618 0.08
968 482 0.06
969 186 0.02
970 20 0.00
971 58 0.01
972 84 0.01
973 339 0.04
974 72 0.01
975 191 0.02
976 19 0.00
977 3 0.00
978 14 0.00
979 228 0.03
980 129 0.02
981 40 0.00
982 2 0.00
984 35 0.00
985 91 0.01
986 3 0.00
987 1 0.00
988 1 0.00
989 2 0.00
990 5 0.00
991 3 0.00
992 1 0.00
993 220 0.03
994 43 0.01
996 3 0.00
997 1 0.00
999 8 0.00
1001 1 0.00
1002 2 0.00
1004 1 0.00
1005 132 0.02
1006 11 0.00
1007 2 0.00
1008 4 0.00
1010 4 0.00
1011 1 0.00
1012 1 0.00
1013 8 0.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (938 bp):
AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCTAACAGCTAAACAGTACAGTAACA
TAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAAT
CACTATTAACAATAGCAATCAAAGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATA
TAATCAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACT
CAGGGACTAAAATGATACATATCCAAAATATAGTAATAGAAACAATGGAGATAAGGGGTTTATAC
CGTGTTACTAAGTTACATACTCGTGTAACTCACTGTGACCGTGTGCAAATCAAAAAAAATTCCCA
AAACAAACCTAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAG
TACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGT
AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACAAGATTTTCATGTAATCACT
ATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
CAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
GACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
GAGGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGA
CCGTGTGCAAATCGAAAAAATTTCCCAA
Found at i:95176341 original size:479 final size:481
Alignment explanation
Indices: 95169739--95180400 Score: 11734
Period size: 479 Copynumber: 22.1 Consensus size: 481
95169729 TTCATCACCC
* *
95169739 AACAAACCCAACCATGTGTAATGCATAATTGAATATCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
95169804 ACAATATCGGTAAGAAAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTAC-AGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
** * * *
95169868 AACAATTGTTTAATCAACATAATTTAGTATAATAGTTTTGGAGACACGATTTTTATATAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* *
95169933 ATTAACAATAGCAATCAA-GACATGTTTATATGCAACCAATTTCATATCAATCACGATCATATAA
195 ATTAACAATAGCAATCAATG-CATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAA
* *
95169997 TCAATTAATCAGGAAT-AAGGACTTAATCATGACTTTAGGGCTCTAACATGTAGGGAATTA-TTC
259 TCAATTAATCAGGAATGAA-GTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTT-
* * * * *
95170060 ATGGACTAAAATGAAACATATCGTAAAATAGTGGAGTAACAGTGGAATAGGGGCTCACACGACTG
322 AGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTG
* * ** * **
95170125 TGTGGGGAGGTCGTGTGAGGCGGTTTAGACTATGTTACTAAGTTACACGGCTGTG----T-A--A
387 TGTGGGGAGGCCGTGTGAGG-GGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTA
* *
95170183 --ACCATGTGCAAATAAAAAAAAATTTCCCAA
451 TGACCGTGTGCAAAT-CAAAAAAATTTCCCAA
* *
95170213 AACAAACCCAACCACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAAT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
95170278 ACAATATAGGTAAGAGAATCATATCAATCATGTAGCATAGCAAGCTAAACAGTACAATAACAGTA
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTAC--T---AGTA
* * *
95170343 ACAGTAATAGTAAAAATTGTTTAATCAACATGCTTTAGTATAATAGTTTTGGAGACACGATTTCC
125 AC------AGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTC
* * * *
95170408 ATGTAATCACTATTAACAATAGCAATCAAGGCATGCTTACATGGAACCAATTTCATATCAATTAT
184 ATGTAATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCAC
** * *
95170473 GATCATATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTATGGCTCTAACATGTAAGG
249 GATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGG
* * * * * *
95170538 AATTATTTAGGGATTAAAATGAAACATCTCGTAAAATAATGGAGAAACAGTGGAATA-GGGCTCA
314 AATTACTTAGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCA
* ** ** * **
95170602 CATGGCTGTGTGAAGAGGCCGTGTGAGGGGGTTTGGACCGTGTTACTGAGTTACATGGCCATGTA
379 CACGGCTGTGTGGGGAGGCCGTGTGA-GGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTA
* * * * *
95170667 ACTCATTGTGACCATGTGCAAATAAAAAAAATTTCTCAA
443 ACTCACTATGACCGTGTGCAAATCAAAAAAATTTCCCAA
* * * *
95170706 AACAAACCTAACCATGTGTAATGCATATTTGAATACCAATCATGTGGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
95170771 -CTAATATAGGTAAGAGATTA-ATATCAATCATGTAGCATAGCATGCTAACCAGTATAGCAACAG
66 AC-AATATCGGTAAGAGA--ACATATCAATCATGTAGCAT---A-GC--A--AG-CTA--AACAG
* * * * * * *
95170834 TAATAATAATAGTAACAATTTTTTAATCAACATGCTTTAGTATAAAAGTTTTGAAGACAGGATTT
117 TACTAGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTT
* * * * * * * *
95170899 TCATGTAATTACTATTAACAATACCAATCAAGGCACGTTTACATCCGACTAATTTCATATCAATC
182 TCATGTAATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATC
* * * * *
95170964 ACGATCATATAATCAATTAATCATGAATGAAGTTTTAATTATGATTTTAGGGCTCAAACATATAG
247 ACGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAG
* * ** * * ** *
95171029 GAAATTACTCATTGACTAAAATGAAACATATCGCAAAATAGTGGAAAAACAGTACAATAGGGGTT
312 GGAATTACTTAGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCT
* * * * * *
95171094 CACACGG-TAGTGTAGGGAGACTGTGTGGGGGGTTTAGACCGTGTTACTGAGTTACAT-GACCGT
377 CACACGGCT-GTGTGGGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAG-CTGT
95171157 GTAACTCACTATGACTATGTAAATCATTGTGACCATGTGCAAATCGAAAAAAATTTCCCAA
440 GTAACTCACTATGAC---------C-----G----TGTGCAAATC-AAAAAAATTTCCCAA
* *
95171218 AACAAACCCAACCATGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAAT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
95171283 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTACATAGTAC-AGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* * * *
95171347 AATAATTGTTTAATTAACATGCTTTAGTATAACAGTTTTAGAGACACAATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * * *
95171412 ATTAACAATAACAATCAAGGCATGCTTATATGCAACTAATTTCATATCGATCACGATCATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * *
95171477 CAATTAATCAGGAATGAAATCTTAATCATAATTTTAGGGCTCTAACATGTAGAGAATTACTCTA-
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACT-TAG
** * * * *
95171541 GGAAAAAAATGAAACATATCGCAAAATAATGGAGAAACAATGGAATAGGGGCTCACACGGTTGTG
324 GGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTG
* * *
95171606 TGGGGAGGCCGTGTGAGGGGGTTT--A----G--AC--AGTAACAT-GGTCGTGTAACTCACTTT
389 TGGGGAGGCCGTGTGA-GGGGTTTAAACCGTGTTACTGAGTTACATAGCT-GTGTAACTCACTAT
*
95171660 GACTGTGTGCAAATCAAAAATAACTTT-CCAA
452 GACCGTGTGCAAATCAAAAA-AA-TTTCCCAA
* * * * *
95171691 AACAAACCCAACTACGTGTAATGCATAATTGAATAACAATCATGCAGGATATCATGCTACACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * * *
95171756 AAAATATCGGTAAAAGAATCATATTAATCATTTAGCATAGCACGCTAAACAGTAC-AGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* * *
95171820 AACAATTGTTTAATCAACATTCTTTAGTATAACTGTTTTGGATACACGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* *
95171885 ATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGAACATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
*
95171950 CAATTAATCAGGAATGAAGTCTTAATCATAATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
* * * *
95172015 GGCTAAAATGATACATATAGTAAAATAGTGAAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
325 GACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * **
95172080 GGGGAGGCCGTGTGAGAGGGTTTAGACCATGTTACTCAGTTACATAGCTGTGTAACTCACCGTGA
390 GGGGAGGCCGTGTGAG-GGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGA
* *
95172145 CTGTGTGCAAAT-AAAAAAAATTCCCAA
454 CCGTGTGCAAATCAAAAAAATTTCCCAA
* * *
95172172 AATAAACCCAACCACGTGTAATGCATAACTGAATACCAAACATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
95172237 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAAACAGTAC-GGCAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
*
95172301 AACAATTGTTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * *
95172366 ATTAACAATAGCAATCAAAGTATACTTACATGCAACCAATTTCATATCAATCACAATCATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * * * *
95172431 CAATTAATCAAGAATGAAGACTTAATCA-CA----A------T--CA--TAGCGAATTACTCAGG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
* * * * * *
95172481 GACCAAAATGAAACATATCGCAAAATAGTAGAGAAACAGTGGAATAAGGACTCACACGACTGTG-
325 GACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * * * * *
95172545 GCGGGAAGCCGTGAGAGGGGATTTAGACCATGATACTGAGTTACATAGCCGTGTAACTCACTGTG
390 G-GGGAGGCCGTGTGAGGGG-TTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATG
* * *
95172610 ACCGTGTGTAACTCGAAAAAAATTTTCCAA
453 ACCGTGTGCAAATC-AAAAAAATTTCCCAA
*
95172640 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCTTGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * ** *
95172705 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAACGTGCTAAACTGTAC-AGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* * * *
95172769 AGCAATTGTTTAATCAACATACTTTAGGATAACAG-TTTAGAGACACGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * * *
95172833 ATTAACAATACCAATCAATGCATGCTTACAGGTAACCAATATCATGTCAATCACGATCATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * *
95172898 CAATTAATCAAGATTGAAGTCTTAATCATGATTTTAGGGCTCTAACATGCAGGGAA-TA-TTCAG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTT-AG
* * * * *
95172961 GGACTAAAATGATACATATCACAAAATAATGGAGAAACAATGGAATAGGGGATCACACAGCTGTG
324 GGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTG
* * * * ** ** * *
95173026 TGAGGAGGCCGTGTGAGAGGGTTTAGACCATGTTA-GGAGTTACACGGCTAAGTAACTCATTGTG
389 TGGGGAGGCCGTGTGAG-GGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATG
** *
95173090 ATTGTGTGCAAATCGAAAAAAATTTCCTAA
453 ACCGTGTGCAAATC-AAAAAAATTTCCCAA
* * * * * *
95173120 AACGAACCTAACCACGTGTAATGCATAACTGAATACCAAACATGTACCATATCATCCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
95173185 ACAATATCAGTAAGAGAATCATATCAATCATGGAGCATAGCATGCTAAACAGTA-TAGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* *
95173249 AACAGTAATAATTGTTTAATCAACATGATTTAGTATAACAGTTTTGGAGACACAATTTTCATGTA
130 AAC------AATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTA
* * * * * *
95173314 ATCACTATTAACAATAGCAATCAAGGCATACTTACATACAACCAATTTCATGTCAATTACGATTA
189 ATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCA
** * *
95173379 TATAATCAATTAATCAATAATGAAGTCTTAATCATGATTTTAAGGCTCCAACATGTAGGGAATTA
254 TATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTA
* * ** * * *
95173444 CTTAGGGACTAAAATGAAACATCTTACAAAATAATGGAGAAACAGTAGAATA-GGGCTCACACAG
319 CTTAGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGG
* * * * *
95173508 CTGTGTGGGGAGGCCGTGTGAGGGGGTTTAGACCGTGTTACTGAGTAACA-GGGTCGTGTAACTT
384 CTGTGTGGGGAGGCCGTGTGA-GGGGTTTAAACCGTGTTACTGAGTTACATAGCT-GTGTAACTC
*
95173572 ACTGTGACCGTGTGCAAAT-AGAAAAAATTTCCCAA
447 ACTATGACCGTGTGCAAATCA-AAAAAATTTCCCAA
* * **
95173607 AACAAACCCAACCACTTGTAATGTATTTTTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * *
95173672 ACAATATAGGTAAGAGATTCATATCAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTA
66 ACAATATCGGTAAGAGA-ACATATCAATCATGTAGCATAGCAAGCTAAAC-----AGT-AC--T-
* * * *
95173737 ACAGTAATAGTAACAATTGTTTAATCAACATGTTTTAGTATAACAGTTTTGAATG-CATGATTTT
121 --AGTAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGA-GACACGATTTT
* * * * *
95173801 TATGTAATTACTATTAACAATAGCAACCAA-GCCATGCTTATATGTAACCAATTTCATATCAATC
183 CATGTAATCACTATTAACAATAGCAATCAATG-CATGCTTACATGCAACCAATTTCATATCAATC
* * ** *
95173865 ATGATCCTATAATCAATTAATCACAAATGATA-TTTTAATCATGATTTTAGGGCTCTAACATGTA
247 ACGATCATATAATCAATTAATCAGGAATGA-AGTCTTAATCATGATTTTAGGGCTCTAACATGTA
** * * * * * * * *
95173929 AAGAATTACTCATGAAATAAAATGAAACATATCACAAAATAGTGGAGAAACAGTGTAATAGGGGT
311 GGGAATTACTTAGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGC
* * * *** *
95173994 TCATACGGTTGTCTTAAGAGGCCGTGTGAAGGGGTTTAGACCGTGTTAC------ACGAT--C-G
376 TCACACGGCTGTGTGGGGAGGCCGTGTG-AGGGGTTTAAACCGTGTTACTGAGTTAC-ATAGCTG
* ** * * *
95174050 AGTAACTCACTGCGACCATGTGCAAATAAAAAAAAATTCCCAA
439 TGTAACTCACTATGACCGTGTGCAAATCAAAAAAATTTCCCAA
* * * * * *
95174093 CATAAACTCAACCACGTGTAATGCATAACTGAATACCAATCATGTAGCATATCAAGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* ** ** *
95174158 ACAATATCGGTAAGCGAATCATATCAATCATACAGCATAGCATCCTAAATAGTAC-AGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* *
95174222 AACAATTGTTTAATCAACATGCTTTAGTATAACAGATTTGGAGACACGATTTTCATGTAATTACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * *
95174287 GTTAACAATAGCAATCAAGGCATGCTTACATGTAACCAATTTCATGTCAATCACGATCATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
*
95174352 CAATTAATCAAGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
** * * * *
95174417 GAAAAAAATTATACATATCGTAAAATAGTGCAGAAACAGTAGAATAGGGGCTCACACGGCTGTGT
325 GACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * ** * * *
95174482 GAGGAGGCCTTGTGAGGGGGTTTAGACTATGTTACTGAGTTACATGGCCGTGTAACTCACTGTGA
390 GGGGAGGCCGTGTGA-GGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGA
* * *
95174547 CCGTATGCAAATCGAAAATAACTTCCCAA
454 CCGTGTGCAAATC-AAAAAAATTTCCCAA
* * * *
95174576 AATAAACCCAACTACGTGTAATGCATAATTGAATTA-CAAACATGTAGCATATCATGTTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAA-TACCAATCATGTAGCATATCATGCTAAACAG
* * *
95174640 TACATTATCGATAAGCGAATCATATCAATCATGTAGCATAGCATA-CTAAACAGTGTAGTAACAG
65 TACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCA-AGCTAAAC-----AGT-AC--
95174704 TAACAGTAACAGTAACGGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACA
120 T---AGTAAC----A--GTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACA
* * * * *
95174769 CGATTTTCATGTAATCACTATTGACAATACCAGTCAAAGCATGCTTACATGTAACCAATTTCATA
176 CGATTTTCATGTAATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATA
* * *
95174834 TCAATCACGATCATATAATCAATTAATCAAGAATGAAGGCTTAATCATGATTTTAAGGCTCTAAC
241 TCAATCACGATCATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAAC
* * * * * ** *
95174899 ATTTAGGTAATTACTCAGGGACTAAAATGATAGATATC-CTAAAATTGTAAAGAAACAATGGAAT
306 ATGTAGGGAATTACTTAGGGACTAAAATGATACATATCGC-AAAATAGTGGAGAAACAGTGGAAT
* * * * * * * *
95174963 AAGGGGTTTATAC--C-GTAT---TA---C---T-A--AG-TTACATACTCGTGTAACTCACTGT
370 -AGGGGCTCACACGGCTGTGTGGGGAGGCCGTGTGAGGGGTTTA-A-AC-CGTGTTACTGA--GT
* * * * ** *** *
95175012 GAC--CG-TGTGCAAATCA--AAAAAAAT-T-C---CCAAAACAAA-----C--
429 TACATAGCTGTGTAACTCACTATGACCGTGTGCAAATCAAAA-AAATTTCCCAA
* * * * *
95175049 --CTAA--C-A--ACGTGTAATGCATAATTTAATACCAGTCATATAGCATATCATGCTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95175107 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAACATGCTAAACAGTA-TAGTAATAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* * *
95175171 AACAATTGTTTAATCAACATGCTTTAGTATAACAGGTTTGGAGACAAGATTTTCATGTAATCATT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* *
95175236 ATTAACAATAGCAA-CCATGGCATGCTTACATGTAACCAATTTCATATCAATCACGATCATATAA
195 ATTAACAATAGCAATCAAT-GCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAA
* * * * ** ** *
95175300 CCAATTAATCAAGAATGAAGTCTTAATCATAATTTTAGGGCTCTAACATGCATAGAATTTTTTAA
259 TCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAG
* * * * * *
95175365 GGACTAAAATGATACATATCGCAAAATAATGGAAAAACAGTAGAATAGGGGCTCATACAGCTATG
324 GGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTG
* * * * * * *
95175430 TAGGGAGGCCGTGTGAGGGATTTAAACTGTATTACTGAGTTATATGGCTGTGTAACTCACTGTGA
389 TGGGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGA
* * **
95175495 CTGTGTGCAAATTGAAAAAAAAAATCCCAA
454 CCGTGTGCAAA-T-CAAAAAAATTTCCCAA
* * * * * *
95175525 AACAAACCTAGCCACTTGTAAGGCATAATTAAATACCAATCATGTAACATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
95175590 ACAATATCGGTAAGAGAATCATATCAATCATGTAGCATAGCACGCTAAACAGTACAGTAATAGTA
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTAC-----TAGTA
* *
95175655 ACAGTAACAATTGTGTAATCAACATGTTTTAGTATAACAGTTTTGGAGATC-CGATTTTCATGTA
125 ACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGA-CACGATTTTCATGTA
* * * *
95175719 ATCACTATTAACAATAGCAATCAAGGCATGCTTATATGCAACCAATTTCATACCAATCACAATCA
189 ATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCA
* *
95175784 TATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACAGGTAGGGAATTT
254 TATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTA
* * ** * *
95175849 CTCT-GGGACTAAAATGATACATATCCCAAAATAGTGGAGATACAGTATAGTAGGGGCACACACG
319 CT-TAGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACG
* *
95175913 GCTGTGTGGGGAGGCCGTGTGAGGGTGTTTAAACCGTGTTACTCAGTTACATAGCTGTCTAACTC
383 GCTGTGTGGGGAGGCCGTGTGAGGG-GTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTC
* *
95175978 ATTATGACC-TAGTGCAAATCAAAAAATATTTTCCAA
447 ACTATGACCGT-GTGCAAATCAAAAAA-ATTTCCCAA
* * *
95176014 AACAAACCCAACCACGTGTAATGCGTAATTGAATAACAATCATGTAGCATATCATGCTAAACTGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
*
95176079 ACAATATCGGTAAGAG-A-A-ATCAATCATGTAACATAGCAAAG-TAAACAGTACTA-TAACAGT
66 ACAATATCGGTAAGAGAACATATCAATCATGTAGCATAGC-AAGCTAAACAGTACTAGTAACAGT
* * ** *
95176139 AACAATTGTTTAATCAATATGCTTTAATATAATTGTTTTAGAGACACGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* ** * * * *
95176204 ATTAACAATATCAATCAATGCATATTTACATGCAACAAATTTCATACCAATAAAGATCATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
*
95176269 CAATTAATCAGGAGTGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
* * * * *
95176334 AACTAAAATGATACATAACCCAAAATAG-GAGAGAAACAGTGGAATAGGGGCTCACAAGCCTGTG
325 GACTAAAATGATACATATCGCAAAATAGTG-GAGAAACAGTGGAATAGGGGCTCACACGGCTGTG
* * * * * * * *
95176398 TGGGGAGACCTTGTGAGGGGTCTAGACCATGTTACTCAGTTACATAGCTATGTAACTTACTATGA
389 TGGGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGA
* *
95176463 CCGTATGCAAATCGAAAAACATTTCCCAA
454 CCGTGTGCAAATC-AAAAAAATTTCCCAA
* * *
95176492 AACAAAACCAACCACGTGTAAGGCATACTTGAATACCAATCATGTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95176557 ATAATATCGGTAAGAGAATAATATCAATAATGTAACATAGCAAGCTAAACAGTAC-AGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
95176621 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * * * * *
95176686 ATTGACAATAGCAATTAAAGCATACTTACACGCAACCAATTTCATATCAATCCCGATCATATAAC
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * * *
95176751 CAATTAATCAAGAATGAAGTCTTAATCATAATTTTAGGGCTTTAACATGTAGGGAATTACTCAGG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
* * * *
95176816 GACTAAAATGAAACATATCGTAAAATAGTGGTGAAACAGTGGAATCA-GGACTCACACGGCTGTG
325 GACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAAT-AGGGGCTCACACGGCTGTG
* * * * *
95176880 TGGGGAGGCCGTGAGGGTGGGTTTATACCGTGTTACTAAGTTACAT-GCCCGTGTAACTCACTAT
389 TGGGGAGGCCGTGTGAG-GGGTTTAAACCGTGTTACTGAGTTACATAG-CTGTGTAACTCACTAT
95176944 GACCGTGTGCAAATCGAAAAAAA-TTCCCAA
452 GACCGTGTGCAAATC-AAAAAAATTTCCCAA
* * * * *
95176974 AACAAACCCAACAATGTGAAATGCATAATTGAATATCAATCATGTATCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95177039 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAACATGCTAATCAGTA-TAGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* * *
95177103 AACAATTGTTTAATCAACATGCTTTAGTATAATAGGTTTGGAGACAAGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
*
95177168 ATTAACAATAGCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAA-
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * * * * *
95177232 CTAATTAATCAGGAATGAAGACTTAATTATGATTTTATGGCTCTAACATGCATGGAAATA-TTCA
260 C-AATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTT-A
* ** * * *
95177296 GGGGCTAAAATGATACATATCAAAAAATAATGGAGAAACAGTGGAATAAGGGCTCACACAGCTGT
323 GGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGT
* * * *
95177361 GTAGGAAGGCCGTGTGAAGGGTTTAAACTGTGTTACTGAGTTAC--A-C-G-GCTAACTCACTAT
388 GTGGGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTG-TAACTCACTAT
* * *
95177421 GACTGTGTGCAAACTAAAAAAAAAATTCCC-A
452 GACCGTGTGCAAA-T-CAAAAAAATTTCCCAA
* * *
95177452 AACGAACCCAACCACATGTAATGCATAATTGAATACCAATCATATAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * ** * * *
95177517 ATACTATCGGTAA-AGGAATCATATCAAT-AGTGTTTCATAGTATGCTAAACAATACAGTAATAG
66 ACAATATCGGTAAGA-GAA-CATATCAATCA-TGTAGCATAGCAAGCT----AA-ACAGTACTAG
* * * *
95177580 TAATAGTAATAATTATGTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGT
123 TAACAGTAACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGT
* *
95177645 AATCACTATTAACAATAGCAATCAATGCATGCTTACTTGCAACCGATTTCATATCAATCACGATC
188 AATCACTATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATC
* * *
95177710 ATATAATCAATTAATCAGGAATGAAGTCTTAATCATAATTTTGGGGCTCTAACAGGTAGGGAATT
253 ATATAATCAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATT
* * *
95177775 ACTCAGGGACTAAAATGATACATATCGCAAAATAATGGAGAAACAGGGGAATAGGGGCTCACACG
318 ACTTAGGGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACG
* * * *
95177840 GCTGTGTGGGGAGGCTGTGTGAGGGGATTTAGACCGTGTTACTCAGTTACATAGTTGTGTAACTC
383 GCTGTGTGGGGAGGCCGTGTGAGGGG-TTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTC
* * *
95177905 ACTATGACCGTGTACAAATCGAAAAATATTTTCCAA
447 ACTATGACCGTGTGCAAATC-AAAAAAATTTCCCAA
* * * * *
95177941 AACAAACCTAACCACGTGTAATACATAATTAAATACCAATCATGTAGCATATCATGTTAAATAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
95178006 ACAATATCGGT-A-A-AAGATATCAATCATGTAACATAGCAAGCTAAACAGTAC-AGTAACAGTA
66 ACAATATCGGTAAGAGAACATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGTA
* * *
95178067 ACAATTGTTTAATCAACGTGCTTTAGTATAACAGTTTTAGAGACACGATTTTCAAGTAATCACTA
131 ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
* * * * *
95178132 CTGACAATAGCAATTAATGCATGCTTACATGCAACCAATTTCATAACAATCACGATCATATAACC
196 TTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
** *
95178197 AATTAATCAATAATGAAGTCTTAATCATGATTTTAGAGCTCTAACATGTAGGGAATTAC-T----
261 AATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGG
* * * * * * *
95178257 -C--AAATGATAGATATC-CTAAAATTGTGAAGAAACAATAGAATAAGGACTCACACGGCTGTGT
326 ACTAAAATGATACATATCGC-AAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * * * * * *
95178318 GCGGAGGTCGTGAGAGGGGTTTATACCGTGTTTCTAAGTTACATACCTGTGTAACTCACTGTGAC
390 GGGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGAC
*
95178383 CGTGTGCAAAT-AAAAAAAATTCCCAA
455 CGTGTGCAAATCAAAAAAATTTCCCAA
* * * *
95178409 AACAAACCCAACAACGTGTAATGCATAATTTAATACCAGTCATATAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
** * *
95178474 ACAATATCAATAAGAGAATCATATCAATCATGTAGCATAACATGCTAAACAGTAC-AGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
*
95178538 AACAATTGTTTAATCAACATGCTTTAGTATAACAGGTTTGGAGACACGATTTTCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * * *
95178603 ATTAATAATATCAATCAAGGCATGCTTACATGCAACCAATTTCATATCAATCACGATTATAT-AG
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * *
95178667 CAATTAATCAGGAATGAAGTTTTAATCATGATTTTAGGGCTCTAACATGCATGGAATTA-TTCAG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTT-AG
* * * * * *
95178731 GGTCTAAAATGATACATATTGCAAAATAATGGAGAAACAGTGGAATAGGGACTCACACAGCTTTG
324 GGACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTG
** * * ** * * *
95178796 AAGGGAGGACGTGTGAGGGGTTTAAACTGTGTTACTGAGTTACACGGCTTTGTAACTTACTGTGA
389 TGGGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGA
* *
95178861 CTGTGTGCAAAT-AGAAAAAAATTCCCAA
454 CCGTGTGCAAATCA-AAAAAATTTCCCAA
* * * * * *
95178889 AACAAACCTAACCATGTGTAAGGCATAATCGTATACCAATCATTTAGCATATCATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* ***
95178954 ACAATATCGGTAAGAGAATCATATCAATCATGTAGTATAGCCTCCTAAACAGTA-TAGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* * * *
95179018 AACCATTGTCTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACAATTATCATGTAATCACT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * *
95179083 ATTAACAATAGCAATCAAGGCATGCTTACATGCAATCAATTTCATACCAATCACGATCATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * * * **
95179148 CAATTAATCAGGAATAAAGTCTTAATCATGATTTTAGGGCTCTAACTTGTAGGAAATTACTCAAT
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
* * * * * *
95179213 GACTAAAATGATACATATCGAAAAATAGTTGAGAAACAGTGGAATATGGGCTCACATGACTGCGT
325 GACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
** * * * * *
95179278 GAAGAGGCCGTGTGAGGGGGTTTAGACCATGTTACTCAGTTACATAGTTGTGTAACTCACTATAA
390 GGGGAGGCCGTGTGA-GGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGA
* ** *
95179343 CCGTGTGCAAATCGAAAGACGTTGCCCAA
454 CCGTGTGCAAATC-AAAAAAATTTCCCAA
* *
95179372 AACAAACCCAACCACATGTAATGCATAATTGAATACCAATCATGTAGCATATCATACTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* * * *
95179437 ATAATATCGGTAGGAG-A-A-ATCAATCATGTAACATAGC-AGACTAAACAGTAC-AGTAATAGT
66 ACAATATCGGTAAGAGAACATATCAATCATGTAGCATAGCAAG-CTAAACAGTACTAGTAACAGT
* * * *
95179497 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTTGTGACACAATTTTCATGTAATCATT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* * * * * * * *
95179562 ATTGACAAAATCAATCAAAGCATGCTTCCGTGTATCCAATTTCATATCAATCACGATCATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * * * *
95179627 CAATTAATCAAGAATGAAGTCTTAATCATCATTTTAGGGTTCTAACATGTAAGGAATTACTCAGG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
* * ** * *** *
95179692 TACTAAAATGAAACATATCATAAAATAGTGGAGAAACAGTAGAATAAAAAG-TCACATGGCTGTG
325 GACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAAT-AGGGGCTCACACGGCTGTG
* * * * * *
95179756 TAGGGAGGCCGTGAGAGGGGGTTTATATCGTGTTATTGAGTTACAT-GCCCGTGTAACTCACTAT
389 TGGGGAGGCCGTGTGA-GGGGTTTAAACCGTGTTACTGAGTTACATAG-CTGTGTAACTCACTAT
**
95179820 GACCGTGTGCAAATCGAAAAACTTTTCCCAA
452 GACCGTGTGCAAATC-AAAAAAATTTCCCAA
* * * * * *
95179851 AACAAATCGAACAACATGTAATTCATAATTGAATACCAATCATGTAGCATATTATGCTAAACAGT
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
* *
95179916 ACAATATCAGTAAGAGAATCATATCAATCATGTAGCATAGCATGCTAAACAGTA-TAGTAACAGT
66 ACAATATCGGTAAGAGAA-CATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGT
* * * *
95179980 TACAATTGTTTAATCAATATGCTTTAGTATAACAGTTTTGGAGACATGATTTTCATGTAATCGCT
130 AACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACT
* *
95180045 GTTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCATGATCATATAAT
195 ATTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAAT
* * * * * *
95180110 TAATTAATTAAGAATGAAGTCATAATCATGATTTTAGGCCTCTAACATGTAGGGAATTACTCAGG
260 CAATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGG
* * * * *
95180175 GACTAAAATGAAATATATTGCAAAATAGTGGAAAAACAGTGGAATA-GTGCTCACACGGCTGTGT
325 GACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGT
* * * * * *
95180239 -GGGAGGCCGTGAGAGGGAATTTAAACCGTGGTACTGATTTACATGGCTGTGTAACTCACTGTGA
390 GGGGAGGCCGTGTGAGGG-GTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGA
* * *
95180303 CTGTGTGCAACTC-GAAAAATTTCCCAA
454 CCGTGTGCAAATCAAAAAAATTTCCCAA
** * *
95180330 AACAAACCCAACCATATGCAATGCATAATTGAATACCAATCATGTACCATAGT-ATGCTAAACAG
1 AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATA-TCATGCTAAACAG
*
95180394 TATAATA
65 TACAATA
95180401 ACAGTAACAA
Statistics
Matches: 8664, Mismatches: 1202, Indels: 639
0.82 0.11 0.06
Matches are distributed among these distances:
447 12 0.00
448 208 0.02
449 2 0.00
450 3 0.00
453 1 0.00
454 5 0.00
456 1 0.00
457 1 0.00
458 3 0.00
459 1 0.00
460 10 0.00
461 14 0.00
462 1 0.00
463 5 0.00
464 1 0.00
465 7 0.00
466 217 0.03
467 110 0.01
468 244 0.03
469 5 0.00
470 57 0.01
471 123 0.01
472 165 0.02
473 389 0.04
474 377 0.04
475 3 0.00
476 2 0.00
477 28 0.00
478 241 0.03
479 1034 0.12
480 445 0.05
481 570 0.07
482 737 0.09
483 629 0.07
484 262 0.03
485 130 0.02
486 387 0.04
487 314 0.04
488 109 0.01
489 426 0.05
490 56 0.01
491 24 0.00
492 6 0.00
493 564 0.07
494 81 0.01
495 9 0.00
496 3 0.00
497 2 0.00
499 21 0.00
500 240 0.03
501 234 0.03
502 13 0.00
503 2 0.00
504 8 0.00
506 1 0.00
508 2 0.00
509 1 0.00
510 1 0.00
511 9 0.00
512 107 0.01
513 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (481 bp):
AACAAACCCAACCACGTGTAATGCATAATTGAATACCAATCATGTAGCATATCATGCTAAACAGT
ACAATATCGGTAAGAGAACATATCAATCATGTAGCATAGCAAGCTAAACAGTACTAGTAACAGTA
ACAATTGTTTAATCAACATGCTTTAGTATAACAGTTTTGGAGACACGATTTTCATGTAATCACTA
TTAACAATAGCAATCAATGCATGCTTACATGCAACCAATTTCATATCAATCACGATCATATAATC
AATTAATCAGGAATGAAGTCTTAATCATGATTTTAGGGCTCTAACATGTAGGGAATTACTTAGGG
ACTAAAATGATACATATCGCAAAATAGTGGAGAAACAGTGGAATAGGGGCTCACACGGCTGTGTG
GGGAGGCCGTGTGAGGGGTTTAAACCGTGTTACTGAGTTACATAGCTGTGTAACTCACTATGACC
GTGTGCAAATCAAAAAAATTTCCCAA
Found at i:95180731 original size:419 final size:422
Alignment explanation
Indices: 95179940--95180821 Score: 1229
Period size: 419 Copynumber: 2.1 Consensus size: 422
95179930 AGAATCATAT
* * * * *
95179940 CAATCATGTAGCATAGCATGCTAAACAGTATAGTAACAGTTACAATTGTTTAATCAATATGCTTT
1 CAATCATGTAGCATAGTATGCTAAACAGTATAATAACAGTAACAATTGTTTAACCAACATGCTTT
* *
95180005 AGTATAACAGTTTTGGAGACATGATTTTCATGTAATCGCTGTTAACAATAGCAATCAATGCATGC
66 AGTATAACAGTTTTGGAGACACGATTTTCATGTAA---C--TTAACAATAGCAATCAAGGCATGC
* * * * **
95180070 TTACATGCAACCAATTTCATATCAATCATGATCATATAATTAATTAATTAAGAATGAAGTCATAA
126 TTACATACAACCAATTTCATATCAATCACGATCATATAATCAACTAACCAAGAATGAAGTCATAA
* **
95180135 TCATGATTTTAGGCCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAATATATTGCAAAA
191 TCATGATTTTAGGCCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCACAAAA
* *
95180200 TAGTGGAAAAACAGTGGAATAGTGCTCACACGGCTGTGTGGGAGGCCGTGAGAGGGAATTTAAAC
256 TAGTGGAAAAACAGTGGAATAGGGCTCACACGGCTGTATGGGAGGCCGTGAGAGGGAATTTAAAC
* * * *
95180265 CGTGGTACTGATTTACATGGCTGTGTAACTCACTGTGACTGTGTGCAACTCG-AAAAATTTCCCA
321 CGTGGTACCGAATTACATGGCCGTGTAACTCACTGTGACTGTGTGCAAATCGAAAAAATTTCCCA
*
95180329 AAACAAACCCAACCATATGCAATGCATAATTGAATAC
386 AAACAAACCCAACCACATGCAATGCATAATTGAATAC
*
95180366 CAATCATGTACCATAGTATGCTAAACAGTATAATAACAGTAACAATTGTTTAACCAACATGCTTT
1 CAATCATGTAGCATAGTATGCTAAACAGTATAATAACAGTAACAATTGTTTAACCAACATGCTTT
*
95180431 AGTATAACAGTTTTGGAGGCACGATTTTCATGT-A-TTAACAATAGCAATCAAGGCATGCTTACA
66 AGTATAACAGTTTTGGAGACACGATTTTCATGTAACTTAACAATAGCAATCAAGGCATGCTTACA
* * *
95180494 TATAACCAATTTCATATCAATCACGATCATATAATCAACTAACCAGGAATGAAGTCTTAATCATG
131 TACAACCAATTTCATATCAATCACGATCATATAATCAACTAACCAAGAATGAAGTCATAATCATG
*
95180559 ATTTTAGGGCTCTAACATGTAGGGAATTACTC-GGGACTAAAATGAAACATATCACAAAATAGTG
196 ATTTTAGGCCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCACAAAATAGTG
* * * * * *
95180623 GAGAAACAGTGGAATAGGGGCTCACAGGGCTTTATGGAGAGGCCGTGTGAGGG-GTTTAAACTGT
261 GAAAAACAGTGGAATA-GGGCTCACACGGCTGTATGG-GAGGCCGTGAGAGGGAATTTAAACCGT
* * *
95180687 GTTACCGAATTACGTGGCCGTGTAACTCACTGTGACCT-TGTGCAAATCGAAAAAAATTTCTCAA
324 GGTACCGAATTACATGGCCGTGTAACTCACTGTGA-CTGTGTGCAAATCG-AAAAAATTTCCCAA
* ** * * *
95180751 AATAAACTTAACTACGTGTAATGCATAATTGAATAC
387 AACAAACCCAACCACATGCAATGCATAATTGAATAC
95180787 CAATCATGTAGCATA-TCATGCTAAACAGTATAATA
1 CAATCATGTAGCATAGT-ATGCTAAACAGTATAATA
95180822 TTGGTAAAAG
Statistics
Matches: 405, Mismatches: 45, Indels: 17
0.87 0.10 0.04
Matches are distributed among these distances:
418 44 0.11
419 180 0.44
420 17 0.04
421 73 0.18
425 1 0.00
426 90 0.22
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.29
Consensus pattern (422 bp):
CAATCATGTAGCATAGTATGCTAAACAGTATAATAACAGTAACAATTGTTTAACCAACATGCTTT
AGTATAACAGTTTTGGAGACACGATTTTCATGTAACTTAACAATAGCAATCAAGGCATGCTTACA
TACAACCAATTTCATATCAATCACGATCATATAATCAACTAACCAAGAATGAAGTCATAATCATG
ATTTTAGGCCTCTAACATGTAGGGAATTACTCAGGGACTAAAATGAAACATATCACAAAATAGTG
GAAAAACAGTGGAATAGGGCTCACACGGCTGTATGGGAGGCCGTGAGAGGGAATTTAAACCGTGG
TACCGAATTACATGGCCGTGTAACTCACTGTGACTGTGTGCAAATCGAAAAAATTTCCCAAAACA
AACCCAACCACATGCAATGCATAATTGAATAC
Found at i:95187140 original size:27 final size:27
Alignment explanation
Indices: 95187083--95187140 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
95187073 ACTAAGAATA
* *
95187083 GCCTTTGTGGCGAACTTTGAAAGAAAT
1 GCCTTTGTGGCAAACTTTGAAAGAAAC
* * *
95187110 GCCTTTGTGGCAAATTTTGAATGGAAC
1 GCCTTTGTGGCAAACTTTGAAAGAAAC
95187137 GCCT
1 GCCT
95187141 CGGTGGCGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (27 bp):
GCCTTTGTGGCAAACTTTGAAAGAAAC
Found at i:95190659 original size:14 final size:14
Alignment explanation
Indices: 95190635--95190667 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
95190625 TCCCTGCTTC
95190635 GTTTCTGTTTCTTTT
1 GTTTCTGTTTC-TTT
95190650 GTTT-TGTTTCTTT
1 GTTTCTGTTTCTTT
95190663 GTTTC
1 GTTTC
95190668 CTTAATTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.73
Consensus pattern (14 bp):
GTTTCTGTTTCTTT
Found at i:95191000 original size:15 final size:14
Alignment explanation
Indices: 95190982--95191012 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
95190972 TTAATTTATT
95190982 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
95190997 TAATAATAATCTAA
1 TAATAATAATCTAA
95191011 TA
1 TA
95191013 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:95191023 original size:21 final size:20
Alignment explanation
Indices: 95190999--95191067 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 20
95190989 AATGCTAATA
95190999 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* * **
95191020 ATAAT-GTTAACTA-ATAATT
1 ATAATAATTAA-TATAAAACC
95191039 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
95191060 ATAATAAT
1 ATAATAAT
95191068 AATCATTATA
Statistics
Matches: 36, Mismatches: 8, Indels: 9
0.68 0.15 0.17
Matches are distributed among these distances:
19 11 0.31
20 6 0.17
21 19 0.53
ACGTcount: A:0.55, C:0.09, G:0.01, T:0.35
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:95196071 original size:20 final size:19
Alignment explanation
Indices: 95196041--95196090 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
95196031 TATTAATCAT
*
95196041 ATTTTATTAAATAAAAATA
1 ATTTTAATAAATAAAAATA
*
95196060 ATATTTAATAAATAAAATTA
1 AT-TTTAATAAATAAAAATA
95196080 ATTTT-ATAAAT
1 ATTTTAATAAAT
95196091 TTTATTAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 6 0.21
19 5 0.18
20 17 0.61
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTTTAATAAATAAAAATA
Found at i:95197353 original size:26 final size:26
Alignment explanation
Indices: 95197324--95197375 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
95197314 TAAATAAAGA
95197324 TATGCATGAAGATCGAAACAAGTTTG
1 TATGCATGAAGATCGAAACAAGTTTG
95197350 TATGCATGAAGATCGAAACAAGTTTG
1 TATGCATGAAGATCGAAACAAGTTTG
95197376 ATCTACCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (26 bp):
TATGCATGAAGATCGAAACAAGTTTG
Found at i:95204924 original size:18 final size:18
Alignment explanation
Indices: 95204901--95204935 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
95204891 TAAGTCCAAA
95204901 CTTCATGAGGAACAAAAG
1 CTTCATGAGGAACAAAAG
95204919 CTTCATGAGGAACAAAA
1 CTTCATGAGGAACAAAA
95204936 CTTAAAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (18 bp):
CTTCATGAGGAACAAAAG
Found at i:95208342 original size:17 final size:17
Alignment explanation
Indices: 95208320--95208363 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
95208310 AATTACATCA
95208320 TAATTTTCTGTCATGTT
1 TAATTTTCTGTCATGTT
95208337 TAATTTTCTGTCATGTT
1 TAATTTTCTGTCATGTT
95208354 TAATTTTCTG
1 TAATTTTCTG
95208364 CCAATTAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.18, C:0.11, G:0.11, T:0.59
Consensus pattern (17 bp):
TAATTTTCTGTCATGTT
Found at i:95210034 original size:54 final size:51
Alignment explanation
Indices: 95209886--95210128 Score: 194
Period size: 48 Copynumber: 4.8 Consensus size: 51
95209876 GTGTAGGAAC
* * * * *
95209886 TGGGGGCTTATATGGGGGAGTTGGTGCTTTAGTTGG-GGTGCTGGAGCAGGTG
1 TGGGGGCTTATATGGGGGAGTAGGAGCCTTGGTTGGTGGTGCTGGTGC-GG-G
* * ** * *
95209938 TTGGGGGCTTATATGGGGGTGTAGGGGCCTTGACTGGAGGTGCCGGTGCGGGAG
1 -TGGGGGCTTATATGGGGGAGTAGGAGCCTTGGTTGGTGGTGCTGGTGC-GG-G
*
95209992 TAGGGGGTTTATATGGGGGAGTAGGAGCCTTGGTTGGTGGTGCTGGTGC---
1 T-GGGGGCTTATATGGGGGAGTAGGAGCCTTGGTTGGTGGTGCTGGTGCGGG
* * * *
95210041 TGGGGGCTTATATGGTGGAGTAGGAGCCTTGGTTGGTGGCGCAGGAGC---
1 TGGGGGCTTATATGGGGGAGTAGGAGCCTTGGTTGGTGGTGCTGGTGCGGG
* * * * *
95210089 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGTTGGTGGT
1 TGGGGGCTTATATGGGGGAGTAGGAGCCTTGGTTGGTGGT
95210129 TTATATGGTG
Statistics
Matches: 160, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
48 77 0.48
49 1 0.01
53 30 0.19
54 52 0.32
ACGTcount: A:0.12, C:0.09, G:0.50, T:0.29
Consensus pattern (51 bp):
TGGGGGCTTATATGGGGGAGTAGGAGCCTTGGTTGGTGGTGCTGGTGCGGG
Found at i:95210127 original size:33 final size:33
Alignment explanation
Indices: 95210089--95210189 Score: 195
Period size: 33 Copynumber: 3.1 Consensus size: 33
95210079 GCGCAGGAGC
95210089 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
1 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
95210122 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
1 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
95210155 TGG-GGTTTATATGGTGGAGTGGGGGCCTTGGT
1 TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
95210187 TGG
1 TGG
95210190 GGGTGCTGGA
Statistics
Matches: 68, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 32 0.47
33 36 0.53
ACGTcount: A:0.09, C:0.06, G:0.50, T:0.36
Consensus pattern (33 bp):
TGGTGGTTTATATGGTGGAGTGGGGGCCTTGGT
Found at i:95210167 original size:32 final size:32
Alignment explanation
Indices: 95210093--95210191 Score: 189
Period size: 32 Copynumber: 3.1 Consensus size: 32
95210083 AGGAGCTGGT
95210093 GGTTTATATGGTGGAGTGGGGGCCTTGGTTGG
1 GGTTTATATGGTGGAGTGGGGGCCTTGGTTGG
95210125 TGGTTTATATGGTGGAGTGGGGGCCTTGGTTGG
1 -GGTTTATATGGTGGAGTGGGGGCCTTGGTTGG
95210158 GGTTTATATGGTGGAGTGGGGGCCTTGGTTGG
1 GGTTTATATGGTGGAGTGGGGGCCTTGGTTGG
95210190 GG
1 GG
95210192 GTGCTGGAGT
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 34 0.52
33 32 0.48
ACGTcount: A:0.09, C:0.06, G:0.51, T:0.34
Consensus pattern (32 bp):
GGTTTATATGGTGGAGTGGGGGCCTTGGTTGG
Found at i:95210199 original size:27 final size:28
Alignment explanation
Indices: 95210132--95210211 Score: 81
Period size: 32 Copynumber: 2.8 Consensus size: 28
95210122 TGGTGGTTTA
*
95210132 TATGGTGGAGTGGGGGCCTTGGTTGGGG
1 TATGCTGGAGTGGGGGCCTTGGTTGGGG
*
95210160 TTTATATGGTGGAGTGGGGGCCTTGGTTGGGG
1 ----TATGCTGGAGTGGGGGCCTTGGTTGGGG
* *
95210192 -GTGCTGGAGTTGGGGCCTTG
1 TATGCTGGAGTGGGGGCCTTG
95210212 TACGGCGGTG
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 17 0.38
32 28 0.62
ACGTcount: A:0.07, C:0.09, G:0.53, T:0.31
Consensus pattern (28 bp):
TATGCTGGAGTGGGGGCCTTGGTTGGGG
Found at i:95210221 original size:27 final size:27
Alignment explanation
Indices: 95210169--95210230 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
95210159 GTTTATATGG
* *
95210169 TGGAGTGGGGGCCTTGGTTGGGGGTGC
1 TGGAGTGGGGGCCTTGGTCGGCGGTGC
*
95210196 TGGAGTTGGGGCCTT-GTACGGCGGTGC
1 TGGAGTGGGGGCCTTGGT-CGGCGGTGC
*
95210223 CGGAGTGG
1 TGGAGTGG
95210231 TGGGAGACTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.06, C:0.15, G:0.55, T:0.24
Consensus pattern (27 bp):
TGGAGTGGGGGCCTTGGTCGGCGGTGC
Found at i:95211510 original size:2 final size:2
Alignment explanation
Indices: 95211457--95211494 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
95211447 ACATCTTCTT
95211457 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95211495 AAAGATAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95215179 original size:39 final size:39
Alignment explanation
Indices: 95215025--95215218 Score: 244
Period size: 40 Copynumber: 4.9 Consensus size: 39
95215015 CGTTCAAACA
* * * * * *
95215025 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
95215065 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
* * * * *
95215105 CCTTCGGAGTTTATCCCGGATATCATAGCTAGCACAATTG
1 CCTTCGG-GCTTAGCCCGGATATCACAACTCGCACAATTG
95215145 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
*
95215184 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
95215219 TTCATACCCA
Statistics
Matches: 135, Mismatches: 18, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
39 61 0.45
40 73 0.54
41 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:95215185 original size:79 final size:79
Alignment explanation
Indices: 95215056--95215207 Score: 252
Period size: 79 Copynumber: 1.9 Consensus size: 79
95215046 ATGATAACCC
* *
95215056 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGAGTTTATCC
1 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGG-GCTTAGCC
95215121 CGGATATCATAGCTA
65 CGGATATCATAGCTA
* *
95215136 GCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
95215200 GGATATCA
66 GGATATCA
95215208 CAATTCGCAC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
78 15 0.22
79 37 0.54
80 16 0.24
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCTA
Found at i:95219003 original size:14 final size:14
Alignment explanation
Indices: 95218980--95219012 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
95218970 TTATATTAGT
95218980 ATAA-TAAAATAAA
1 ATAATTAAAATAAA
*
95218993 ATAATTAAAATATA
1 ATAATTAAAATAAA
95219007 ATAATT
1 ATAATT
95219013 CTATTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAATTAAAATAAA
Found at i:95219087 original size:16 final size:16
Alignment explanation
Indices: 95219066--95219097 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
95219056 AATAAAAAAG
95219066 TTTATATAATTAATAA
1 TTTATATAATTAATAA
95219082 TTTATATAATTAATAA
1 TTTATATAATTAATAA
95219098 ACAGTAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTATATAATTAATAA
Found at i:95219573 original size:14 final size:14
Alignment explanation
Indices: 95219554--95219583 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
95219544 TGGCATCCGA
95219554 TGCTTTATATTTGG
1 TGCTTTATATTTGG
95219568 TGCTTTATATTTGG
1 TGCTTTATATTTGG
95219582 TG
1 TG
95219584 AGAGGCTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.07, G:0.23, T:0.57
Consensus pattern (14 bp):
TGCTTTATATTTGG
Found at i:95221661 original size:11 final size:12
Alignment explanation
Indices: 95221637--95221674 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
95221627 TTTTAAATTT
95221637 AAAT-ATTTTAA
1 AAATAATTTTAA
95221648 AAATAATTTTAA
1 AAATAATTTTAA
*
95221660 AAAAAATTATTAA
1 AAATAATT-TTAA
95221673 AA
1 AA
95221675 TTATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 4 0.17
12 14 0.58
13 6 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATAATTTTAA
Found at i:95221685 original size:11 final size:11
Alignment explanation
Indices: 95221661--95221702 Score: 56
Period size: 9 Copynumber: 4.2 Consensus size: 11
95221651 TAATTTTAAA
95221661 AAAAATTAT-T
1 AAAAATTATAT
95221671 -AAAATTATAT
1 AAAAATTATAT
95221681 AAAAA--ATAT
1 AAAAATTATAT
95221690 AAAAATTATAT
1 AAAAATTATAT
95221701 AA
1 AA
95221703 TTTTTTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
9 17 0.61
10 1 0.04
11 10 0.36
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAAATTATAT
Found at i:95221694 original size:20 final size:21
Alignment explanation
Indices: 95221660--95221702 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
95221650 ATAATTTTAA
*
95221660 AAAAAATTATTAAAATTATAT
1 AAAAAATTATAAAAATTATAT
95221681 AAAAAA-TATAAAAATTATAT
1 AAAAAATTATAAAAATTATAT
95221701 AA
1 AA
95221703 TTTTTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAAATTATAAAAATTATAT
Found at i:95224054 original size:35 final size:35
Alignment explanation
Indices: 95224015--95224121 Score: 100
Period size: 35 Copynumber: 3.2 Consensus size: 35
95224005 AGGCACCAAT
95224015 AAAATAATGACACGTCATAAAATTTTAAAGATAAC
1 AAAATAATGACACGTCATAAAATTTTAAAGATAAC
* * * * * *
95224050 AAAAT-ATTA-A-G-CAT--AGTTTTTAGGCACCAAT
1 AAAATAATGACACGTCATAAAATTTTAAAG-A-TAAC
95224081 AAAATAATGACACGTCATAAAATTTTAAAGATAAC
1 AAAATAATGACACGTCATAAAATTTTAAAGATAAC
95224116 AAAATA
1 AAAATA
95224122 TTATTATACA
Statistics
Matches: 52, Mismatches: 12, Indels: 16
0.65 0.15 0.20
Matches are distributed among these distances:
29 7 0.13
30 1 0.02
31 10 0.19
32 4 0.08
33 2 0.04
34 4 0.08
35 16 0.31
36 1 0.02
37 7 0.13
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.27
Consensus pattern (35 bp):
AAAATAATGACACGTCATAAAATTTTAAAGATAAC
Found at i:95224071 original size:66 final size:66
Alignment explanation
Indices: 95223996--95224124 Score: 258
Period size: 66 Copynumber: 2.0 Consensus size: 66
95223986 CCGAAAAAAT
95223996 ATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATATTAAG
1 ATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATATTAAG
95224061 C
66 C
95224062 ATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATATTA
1 ATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATATTA
95224125 TTATACACTC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (66 bp):
ATAGTTTTTAGGCACCAATAAAATAATGACACGTCATAAAATTTTAAAGATAACAAAATATTAAG
C
Found at i:95224624 original size:21 final size:21
Alignment explanation
Indices: 95224600--95224639 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
95224590 TCGGGTTCAT
*
95224600 GGTTTGAGATTTTAA-ATTTAG
1 GGTTTAAG-TTTTAATATTTAG
95224621 GGTTTAAGTTTTAATATTT
1 GGTTTAAGTTTTAATATTT
95224640 TATATTTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.53
Consensus pattern (21 bp):
GGTTTAAGTTTTAATATTTAG
Found at i:95224666 original size:28 final size:28
Alignment explanation
Indices: 95224608--95224686 Score: 70
Period size: 28 Copynumber: 2.8 Consensus size: 28
95224598 ATGGTTTGAG
* * *
95224608 ATTTTAAATTTAGGGTTTAAGTTTTAAT
1 ATTTTAAATTTAGAGTTTAAGGTCTAAT
* * *
95224636 ATTTTATATTTAGAGTTTAGGGTCTATT
1 ATTTTAAATTTAGAGTTTAAGGTCTAAT
* *
95224664 A-TTTAGCATTTAGAATTTAAGGT
1 ATTTTA-AATTTAGAGTTTAAGGT
95224687 TACGTATTCA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 4 0.10
28 37 0.90
ACGTcount: A:0.30, C:0.03, G:0.16, T:0.51
Consensus pattern (28 bp):
ATTTTAAATTTAGAGTTTAAGGTCTAAT
Found at i:95225141 original size:7 final size:7
Alignment explanation
Indices: 95225129--95225189 Score: 52
Period size: 7 Copynumber: 8.7 Consensus size: 7
95225119 TGTAAATGGA
95225129 AAACCTT
1 AAACCTT
95225136 AAACCTT
1 AAACCTT
95225143 AAACCTT
1 AAACCTT
*
95225150 AAA-CTC
1 AAACCTT
* *
95225156 GAACCCT
1 AAACCTT
*
95225163 AAACCCT
1 AAACCTT
*
95225170 CAACTCTT
1 AAAC-CTT
*
95225178 GAACCTT
1 AAACCTT
95225185 AAACC
1 AAACC
95225190 CAAACCCTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
6 4 0.09
7 34 0.79
8 5 0.12
ACGTcount: A:0.39, C:0.34, G:0.03, T:0.23
Consensus pattern (7 bp):
AAACCTT
Found at i:95225417 original size:25 final size:24
Alignment explanation
Indices: 95225358--95225419 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
95225348 ATTGGTTGCA
95225358 CAAAAATAAAAAATATTAAATTATG
1 CAAAAA-AAAAAATATTAAATTATG
** *
95225383 GGAAAGAAAAAATGATTAAAATT-TG
1 CAAAAAAAAAAAT-ATT-AAATTATG
95225408 CAAAAAAAAAAA
1 CAAAAAAAAAAA
95225420 GGAAGAGAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
24 7 0.24
25 17 0.59
26 5 0.17
ACGTcount: A:0.66, C:0.03, G:0.10, T:0.21
Consensus pattern (24 bp):
CAAAAAAAAAAATATTAAATTATG
Found at i:95227318 original size:43 final size:43
Alignment explanation
Indices: 95227268--95227353 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
95227258 CATCATTTCA
*
95227268 TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
* *
95227311 TTTCTCATCTCATATTCATTTCTCATCTTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
95227354 CAATCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.51
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
Found at i:95233353 original size:11 final size:12
Alignment explanation
Indices: 95233333--95233357 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
95233323 TTATTTCACG
95233333 TTTAATTTTTTT
1 TTTAATTTTTTT
95233345 TTTAATTTTTTT
1 TTTAATTTTTTT
95233357 T
1 T
95233358 AAGACTACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTAATTTTTTT
Found at i:95236196 original size:3 final size:3
Alignment explanation
Indices: 95236190--95236223 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
95236180 TTCTTCTTTT
*
95236190 TCA TCA TCA TCA TCA TCA TCA TCC TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
95236224 ATTCACTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:95238926 original size:3 final size:3
Alignment explanation
Indices: 95238920--95238953 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
95238910 TTTTTCTTCT
*
95238920 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCT TCC T
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC T
95238954 ATTCGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (3 bp):
TCC
Found at i:95240123 original size:44 final size:44
Alignment explanation
Indices: 95240069--95240152 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
95240059 ATGTCATTCT
*
95240069 ACACACTTAAAGCCCCAAACACTATTAAAAACCAAGGCCTAAAA
1 ACACACTTAAAACCCCAAACACTATTAAAAACCAAGGCCTAAAA
* *
95240113 ACACATTTAAAACCCCAAACACTATTAAAAACGAAGGCCT
1 ACACACTTAAAACCCCAAACACTATTAAAAACCAAGGCCT
95240153 TATGCAATTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.49, C:0.29, G:0.07, T:0.15
Consensus pattern (44 bp):
ACACACTTAAAACCCCAAACACTATTAAAAACCAAGGCCTAAAA
Found at i:95248305 original size:30 final size:29
Alignment explanation
Indices: 95248266--95248326 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
95248256 ATTATATTTA
95248266 TTACTTATATATATGTATTGTT-TTATATG
1 TTACTTATATATAT-TATTGTTCTTATATG
* *
95248295 TTACTTTATATCTATTATTTTTCTTATATG
1 TTAC-TTATATATATTATTGTTCTTATATG
95248325 TT
1 TT
95248327 TATATTACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.62
Consensus pattern (29 bp):
TTACTTATATATATTATTGTTCTTATATG
Found at i:95255971 original size:82 final size:81
Alignment explanation
Indices: 95255867--95256023 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
95255857 AAGCAGCATC
* * ** *
95255867 CAAGATGATTTGGCGTCCTTGTGCTTATAAGGAACAAATCGAGGATGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-GACATAGCAGATATGACTCTCA
*
95255932 AATGTTCTCAATAGATT
65 AACGTTCTCAATAGATT
* *
95255949 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGACATAGCAGATTTGACTCTCAG
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGACATAGCAGATATGACTCTCAA
95256014 ACGTTCTCAA
66 ACGTTCTCAA
95256024 AGCAGATCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 27 0.40
82 40 0.60
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (81 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGACATAGCAGATATGACTCTCAA
ACGTTCTCAATAGATT
Found at i:95256223 original size:117 final size:116
Alignment explanation
Indices: 95255944--95256254 Score: 390
Period size: 117 Copynumber: 2.7 Consensus size: 116
95255934 TGTTCTCAAT
*
95255944 AGATTCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-GACATAGCAGATTTGAC
1 AGATCCAAGATGATTTGGCATCCTTGTG-TTACAAGGAACAAATCGAGGACATAGCAGATTTGAC
*
95256008 TCTCAGACGTTCTC--A-AAGCAGATCTAGACTTCAGATGTTATATTGAAGC
65 TCTCAGACGTTCTCAAATAAGCAGATCTAGACTTCAGATGTTATATTGAAAC
* *
95256057 AGATCCAAGATGATTTGGCATCCTTGTGCTACAAGGAACAAATCGAGGACATAGTAGATTTGACT
1 AGATCCAAGATGATTTGGCATCCTTGTGTTACAAGGAACAAATCGAGGACATAGCAGATTTGACT
95256122 CTCAGACGTTCTCAAATATAGCA-ATCTA-ACCTTCAGATGTT-TATGCTGAAAC
66 CTCAGACGTTCTCAAATA-AGCAGATCTAGA-CTTCAGATGTTATAT--TGAAAC
* * * * * * *
95256174 AGATCCAAGATGATTTGG-TTTCTTGTGTTTATAAGAAACAAATCGAGGACGTTGCAGATATGAC
1 AGATCCAAGATGATTTGGCATCCTTGTG-TTACAAGGAACAAATCGAGGACATAGCAGATTTGAC
*
95256238 TCTCA-A-ATTCTCAAATA
65 TCTCAGACGTTCTCAAATA
95256255 GACTCAAGAT
Statistics
Matches: 175, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
112 17 0.10
113 57 0.33
115 15 0.09
116 25 0.14
117 61 0.35
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (116 bp):
AGATCCAAGATGATTTGGCATCCTTGTGTTACAAGGAACAAATCGAGGACATAGCAGATTTGACT
CTCAGACGTTCTCAAATAAGCAGATCTAGACTTCAGATGTTATATTGAAAC
Found at i:95257894 original size:20 final size:22
Alignment explanation
Indices: 95257869--95257919 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
95257859 GTTTTATGAG
95257869 TATTATTTTTAATTA-TATAT-
1 TATTATTTTTAATTATTATATA
* *
95257889 TATTATTATTACTTATTATATA
1 TATTATTTTTAATTATTATATA
95257911 TATTATTTT
1 TATTATTTT
95257920 CCTTAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 13 0.50
21 5 0.19
22 8 0.31
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTATTTTTAATTATTATATA
Found at i:95257929 original size:23 final size:24
Alignment explanation
Indices: 95257869--95257934 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
95257859 GTTTTATGAG
*
95257869 TATTATT-TTTAATTATATATTAT
1 TATTATTACTTAATTATATATTAT
95257892 TATTATTACTT-ATTATATA-TAT
1 TATTATTACTTAATTATATATTAT
*
95257914 TATT-TTCCTTAAATTAT-TATT
1 TATTATTACTT-AATTATATATT
95257935 TTACATCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
21 5 0.14
22 9 0.24
23 21 0.57
24 2 0.05
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (24 bp):
TATTATTACTTAATTATATATTAT
Found at i:95258002 original size:30 final size:29
Alignment explanation
Indices: 95257963--95258023 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
95257953 ATTATATTTA
95257963 TTACTTATATATATGTATTGTT-TTATATG
1 TTACTTATATATAT-TATTGTTCTTATATG
* *
95257992 TTACTTTATATCTATTATTTTTCTTATATG
1 TTAC-TTATATATATTATTGTTCTTATATG
95258022 TT
1 TT
95258024 TATATTACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.62
Consensus pattern (29 bp):
TTACTTATATATATTATTGTTCTTATATG
Found at i:95258225 original size:22 final size:24
Alignment explanation
Indices: 95258199--95258252 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
95258189 TTTTATTAAC
95258199 TATTTATTTATTT-ACT-ATA-TGT
1 TATTTATTT-TTTAACTAATATTGT
*
95258221 TATTTCTTTTTTAACTAATATTGT
1 TATTTATTTTTTAACTAATATTGT
95258245 TATATTAT
1 TAT-TTAT
95258253 GGAATCTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 3 0.12
22 11 0.42
23 3 0.12
24 6 0.23
25 3 0.12
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.63
Consensus pattern (24 bp):
TATTTATTTTTTAACTAATATTGT
Found at i:95271331 original size:53 final size:51
Alignment explanation
Indices: 95271273--95271377 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 51
95271263 AATGATATAC
95271273 AACAATGTATGGCACCATATAAATCAATCCACAAAACATGTACAAAACAAAAT
1 AACAATGTATGGCACCATATAAATCAATCCAC--AACATGTACAAAACAAAAT
95271326 AACAATGTATGGCACCATATAAATCAATCCACAACATGTACAAAACAAAAT
1 AACAATGTATGGCACCATATAAATCAATCCACAACATGTACAAAACAAAAT
95271377 A
1 A
95271378 GAATTTAGAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
51 20 0.38
53 32 0.62
ACGTcount: A:0.52, C:0.21, G:0.08, T:0.19
Consensus pattern (51 bp):
AACAATGTATGGCACCATATAAATCAATCCACAACATGTACAAAACAAAAT
Found at i:95271747 original size:17 final size:17
Alignment explanation
Indices: 95271727--95271840 Score: 165
Period size: 17 Copynumber: 6.5 Consensus size: 17
95271717 AATGATATGT
95271727 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
* *
95271744 AATCTTAAATATGATTGC
1 AATCTTAGATATGA-TAC
*
95271762 AATATTAGATATGATAC
1 AATCTTAGATATGATAC
95271779 AATCTTAGATATGATAAC
1 AATCTTAGATATGAT-AC
95271797 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
95271814 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
95271832 AATCTTAGA
1 AATCTTAGA
95271841 AGATATGATT
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
17 45 0.52
18 42 0.48
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:95271771 original size:35 final size:35
Alignment explanation
Indices: 95271718--95271840 Score: 192
Period size: 35 Copynumber: 3.5 Consensus size: 35
95271708 ATAATCTTCA
* *
95271718 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
95271754 ATGATTGCAATATTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
**
95271789 ATGATAACAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
95271824 ATGATTGCAATCTTAGA
1 ATGATTGCAATCTTAGA
95271841 AGATATGATT
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 74 0.94
36 5 0.06
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:95272381 original size:17 final size:17
Alignment explanation
Indices: 95272316--95272381 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
95272306 TCTAAACCAA
*
95272316 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
95272332 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
95272351 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
95272366 TATATATTATATTTTA
1 TATATATTATATTTTA
95272382 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:95272405 original size:26 final size:25
Alignment explanation
Indices: 95272358--95272406 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
95272348 TTATAAATAT
* * *
95272358 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
95272383 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
95272407 TTTATATGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:95274073 original size:2 final size:2
Alignment explanation
Indices: 95274066--95274099 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
95274056 TATTATAAAG
95274066 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95274100 ATAGTGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95279531 original size:18 final size:18
Alignment explanation
Indices: 95279497--95279531 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
95279487 AACAGAGCAA
95279497 ATACAAAACATATATCAC
1 ATACAAAACATATATCAC
95279515 ATACAGAAACATA-ATCA
1 ATACA-AAACATATATCA
95279532 AATGCAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.57, C:0.20, G:0.03, T:0.20
Consensus pattern (18 bp):
ATACAAAACATATATCAC
Found at i:95281113 original size:38 final size:38
Alignment explanation
Indices: 95281062--95281138 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
95281052 ACCACTGAAG
95281062 TAGATATGTAAATATGATAGAATTTAATAAGTCAGATA
1 TAGATATGTAAATATGATAGAATTTAATAAGTCAGATA
*
95281100 TAGATATGTAAATATGATAGAATTTAATAAGTTAGATA
1 TAGATATGTAAATATGATAGAATTTAATAAGTCAGATA
95281138 T
1 T
95281139 TCAAATTTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.47, C:0.01, G:0.16, T:0.36
Consensus pattern (38 bp):
TAGATATGTAAATATGATAGAATTTAATAAGTCAGATA
Found at i:95282186 original size:29 final size:29
Alignment explanation
Indices: 95282154--95282212 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
95282144 CCAAAATAAG
95282154 AAAGAATATTTCTTTTATATAGACTTAAT
1 AAAGAATATTTCTTTTATATAGACTTAAT
*
95282183 AAAGAATATTTCTTTTATATAGAGTTAAT
1 AAAGAATATTTCTTTTATATAGACTTAAT
95282212 A
1 A
95282213 GTATGATACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.44
Consensus pattern (29 bp):
AAAGAATATTTCTTTTATATAGACTTAAT
Found at i:95295887 original size:33 final size:32
Alignment explanation
Indices: 95295846--95295913 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
95295836 AATAAAAGAA
95295846 GAAAGCCTCCAATAATCCACTTAGATTGCTCT
1 GAAAGCCTCCAATAATCCACTTAGATTGCTCT
*
95295878 GAAAGGCCTCCAATAATCCACTTAGATTGCTTT
1 GAAA-GCCTCCAATAATCCACTTAGATTGCTCT
95295911 GAA
1 GAA
95295914 TCAAAAGGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 4 0.12
33 30 0.88
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (32 bp):
GAAAGCCTCCAATAATCCACTTAGATTGCTCT
Found at i:95303508 original size:73 final size:74
Alignment explanation
Indices: 95303377--95303522 Score: 188
Period size: 73 Copynumber: 2.0 Consensus size: 74
95303367 TAGTTAACAT
* * * **
95303377 TATTTTCTTACCAAATTAATATTTAGGTAATACTTTATATTAAGTTACCAATTTAAACTAAAAAT
1 TATTTTATAACCAAATTAATATTTAGATAATACTTTATATTAAGTTACCAAACTAAACTAAAAAT
95303442 GTTACCAAA
66 GTTACCAAA
* * * *
95303451 TATTTTATAACCAAATTAAT-TTTATATACTACTTTGTATT-AGTTTATCAAACTAAACTAAAAA
1 TATTTTATAACCAAATTAATATTTAGATAATACTTTATATTAAG-TTACCAAACTAAACTAAAAA
95303514 TGTTACCAA
65 TGTTACCAA
95303523 CTTTAATATA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
72 2 0.03
73 42 0.68
74 18 0.29
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.41
Consensus pattern (74 bp):
TATTTTATAACCAAATTAATATTTAGATAATACTTTATATTAAGTTACCAAACTAAACTAAAAAT
GTTACCAAA
Found at i:95314975 original size:38 final size:37
Alignment explanation
Indices: 95314892--95314991 Score: 109
Period size: 38 Copynumber: 2.7 Consensus size: 37
95314882 ATTTAATACC
*
95314892 ATAAAATATTTATTATATTTATTTGTGTTTTTAATATA
1 ATAAAATATTTATTATATTTATTAGTGTTTTT-ATATA
95314930 ATAAAATATTTATTATATTTATGGTAGTGTTTTT-T-TA
1 ATAAAATATTTATTATATTTAT--TAGTGTTTTTATATA
*
95314967 ATATAAATACTTT-TTA-ATGTATTAG
1 ATA-AAATA-TTTATTATATTTATTAG
95314992 AAAACTTTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
35 3 0.05
37 10 0.18
38 31 0.55
39 3 0.05
40 9 0.16
ACGTcount: A:0.36, C:0.01, G:0.08, T:0.55
Consensus pattern (37 bp):
ATAAAATATTTATTATATTTATTAGTGTTTTTATATA
Found at i:95315024 original size:24 final size:26
Alignment explanation
Indices: 95314988--95315038 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
95314978 TTTTAATGTA
95314988 TTAGAAAACTTTA-TT-TTAGTATTTT
1 TTAGAAAACTTTAGTTATTA-TATTTT
*
95315013 TTAGTAAA-TTTAGTTATTATATTTT
1 TTAGAAAACTTTAGTTATTATATTTT
95315038 T
1 T
95315039 AAAATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 4 0.17
25 16 0.70
26 3 0.13
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (26 bp):
TTAGAAAACTTTAGTTATTATATTTT
Found at i:95317011 original size:39 final size:39
Alignment explanation
Indices: 95316962--95317037 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
95316952 CATTAAAAGT
95316962 AGTGATTAATTGTCCTTAGTTGCTCACCTTCGAAATTAA
1 AGTGATTAATTGTCCTTAGTTGCTCACCTTCGAAATTAA
95317001 AGTGATTAATTGTCCTTAGTTGCTCACCTTCGAAATT
1 AGTGATTAATTGTCCTTAGTTGCTCACCTTCGAAATT
95317038 GACACAGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (39 bp):
AGTGATTAATTGTCCTTAGTTGCTCACCTTCGAAATTAA
Found at i:95317698 original size:2 final size:2
Alignment explanation
Indices: 95317691--95317720 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
95317681 GTCCACTTTG
95317691 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95317721 TAGTTCACGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95321317 original size:19 final size:19
Alignment explanation
Indices: 95321278--95321324 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
95321268 AAGAGTTTAG
95321278 TAAACAAA-AAACTAATAT
1 TAAACAAATAAACTAATAT
*
95321296 TAAACAAATAATCTAA-ATT
1 TAAACAAATAAACTAATA-T
*
95321315 TAAATAAATA
1 TAAACAAATA
95321325 TTGAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.28
Consensus pattern (19 bp):
TAAACAAATAAACTAATAT
Found at i:95323976 original size:17 final size:18
Alignment explanation
Indices: 95323955--95323994 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
95323945 ATAATATATA
95323955 TACATATATATATAATGC
1 TACATATATATATAATGC
95323973 -ACATATATATATAATGC
1 TACATATATATATAATGC
95323990 TACAT
1 TACAT
95323995 TGTATTGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (18 bp):
TACATATATATATAATGC
Found at i:95328351 original size:21 final size:21
Alignment explanation
Indices: 95328268--95328353 Score: 91
Period size: 21 Copynumber: 4.1 Consensus size: 21
95328258 CCTGATCAGT
* * *
95328268 ATACGACATATAAAGTGCCTA
1 ATACGACACACAAAGTGCCTG
* * *
95328289 AAATGACACACAAGGTGCCTG
1 ATACGACACACAAAGTGCCTG
* *
95328310 ATACGACACACGAGGTGCCTG
1 ATACGACACACAAAGTGCCTG
*
95328331 ATACGACACATAAAGTGCCTG
1 ATACGACACACAAAGTGCCTG
95328352 AT
1 AT
95328354 CGATAAAGCC
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (21 bp):
ATACGACACACAAAGTGCCTG
Found at i:95328748 original size:15 final size:15
Alignment explanation
Indices: 95328723--95328780 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
95328713 TCATATATAT
95328723 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
95328739 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* * *
95328754 AACAATTTCAATCAA
1 TATAAATTCAATCAA
95328769 TATAAATTCAAT
1 TATAAATTCAAT
95328781 AAATTCATCG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 32 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:95330433 original size:19 final size:22
Alignment explanation
Indices: 95330409--95330455 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 22
95330399 ATCATTTCCA
95330409 CTAATTACT-CTTAATT-AAG-
1 CTAATTACTACTTAATTAAAGT
*
95330428 CTAATT-TTACTTAATTAAAGT
1 CTAATTACTACTTAATTAAAGT
95330449 CTAATTA
1 CTAATTA
95330456 ACCACTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 1 0.04
19 13 0.57
20 3 0.13
21 6 0.26
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (22 bp):
CTAATTACTACTTAATTAAAGT
Found at i:95331792 original size:20 final size:20
Alignment explanation
Indices: 95331741--95331792 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
95331731 TACATATGAA
*
95331741 ATATGATATTA-AAAGTATGT
1 ATAT-ATATTATAAAGAATGT
** *
95331761 ATACGTAGTATAAAGAATGT
1 ATATATATTATAAAGAATGT
95331781 ATATATATTATA
1 ATATATATTATA
95331793 GTATTAAAAT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.46, C:0.02, G:0.13, T:0.38
Consensus pattern (20 bp):
ATATATATTATAAAGAATGT
Found at i:95331902 original size:17 final size:16
Alignment explanation
Indices: 95331859--95331907 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
95331849 ATGATACTTC
*
95331859 ATAAATATATATACTTA
1 ATAAA-ATATATACATA
*
95331876 CTAAAA-ATATACATA
1 ATAAAATATATACATA
95331891 ATAATAATATATACATA
1 ATAA-AATATATACATA
95331908 CAAAGTACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 11 0.41
16 3 0.11
17 13 0.48
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (16 bp):
ATAAAATATATACATA
Found at i:95331969 original size:16 final size:18
Alignment explanation
Indices: 95331929--95331975 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
95331919 AATATTTAAA
* *
95331929 AATAATAATAGTAAATAT
1 AATATTAATATTAAATAT
95331947 AATATTAATATTAAATA-
1 AATATTAATATTAAATAT
95331964 AA-ATTAATATTA
1 AATATTAATATTA
95331976 TAAATTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 10 0.37
17 2 0.07
18 15 0.56
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AATATTAATATTAAATAT
Found at i:95331979 original size:18 final size:17
Alignment explanation
Indices: 95331925--95331980 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 17
95331915 CACTAATATT
*
95331925 TAAAAATAATAATAGTAAA
1 TAAAATTAAT-ATA-TAAA
95331944 TATAATATTAATAT-TAAA
1 TA-AA-ATTAATATATAAA
95331962 TAAAATTAATATTATAAA
1 TAAAATTAATA-TATAAA
95331980 T
1 T
95331981 TTAATTTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
16 7 0.22
17 3 0.09
18 11 0.34
19 2 0.06
20 4 0.12
21 5 0.16
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
TAAAATTAATATATAAA
Found at i:95337437 original size:46 final size:46
Alignment explanation
Indices: 95337382--95337599 Score: 312
Period size: 46 Copynumber: 4.7 Consensus size: 46
95337372 AGTGTGCTCT
95337382 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
95337428 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
95337474 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
95337520 GTGACATGAAAAGAATAAGACCATGGTTGAAATATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
95337566 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
95337600 CACTATGCCA
Statistics
Matches: 156, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:95337915 original size:23 final size:25
Alignment explanation
Indices: 95337870--95337916 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
95337860 AATAAATATA
*
95337870 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
95337895 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
95337917 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:95346198 original size:13 final size:14
Alignment explanation
Indices: 95346180--95346212 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
95346170 GTTGCTGTAT
95346180 TTTTTTTTTA-TGA
1 TTTTTTTTTAGTGA
*
95346193 TTTTTTTTTAGTTA
1 TTTTTTTTTAGTGA
95346207 TTTTTT
1 TTTTTT
95346213 CACCAACCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (14 bp):
TTTTTTTTTAGTGA
Found at i:95349661 original size:3 final size:3
Alignment explanation
Indices: 95349655--95349682 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
95349645 CCTCTTCCTC
95349655 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
95349683 TTCAAACCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:95355187 original size:14 final size:13
Alignment explanation
Indices: 95355163--95355196 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
95355153 AATTAATTAT
*
95355163 TAATTTAATTAGA
1 TAATTTAATTAAA
95355176 TAATTCTAATTAAA
1 TAATT-TAATTAAA
95355190 TAATTTA
1 TAATTTA
95355197 TATAACTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (13 bp):
TAATTTAATTAAA
Done.