Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 323 of 328
Found at i:95639370 original size:79 final size:78
Alignment explanation
Indices: 95639237--95639386 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
95639227 ATAATCACGT
*
95639237 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
95639302 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
95639316 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
95639379 CCGGATAT
64 CCGGATAT
95639387 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:95640231 original size:17 final size:19
Alignment explanation
Indices: 95640208--95640253 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
95640198 AAGAAGCATG
95640208 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
95640226 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
95640244 AATCATGCTC
1 AATCATGCTC
95640254 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:95647290 original size:40 final size:40
Alignment explanation
Indices: 95647164--95647329 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
95647154 CGGAATATAA
* *
95647164 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* * * *
95647203 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
95647243 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
** * * *
95647283 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
95647322 CCGGATAT
1 CCGGATAT
95647330 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 27 0.25
40 78 0.73
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:95648177 original size:17 final size:19
Alignment explanation
Indices: 95648154--95648199 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
95648144 AAGAAGCATG
95648154 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
95648172 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
95648190 AATCATGCTC
1 AATCATGCTC
95648200 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:95650433 original size:206 final size:206
Alignment explanation
Indices: 95650079--95650625 Score: 898
Period size: 206 Copynumber: 2.7 Consensus size: 206
95650069 AATCTGCTTT
95650079 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
* * * * * *
95650144 CGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATACCAAACCATCTTT
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
*
95650209 GATCTGCTTCAATCTAATCATCTGAAAGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
131 GATCTGCTTCAATCTAATCATCTGAAAGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATGG
95650274 AGACGCCAAAC
196 AGACGCCAAAC
* *
95650285 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGTTTCAGCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
*
95650350 TGAAAGCTAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 TGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
* * *
95650414 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTTCGTCAAATATG
130 GGATCTGCTTCAATCTAATCATCTGAAAGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATG
95650479 GAGACGCCAAAC
195 GAGACGCCAAAC
* * * *
95650491 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCCTCATCGTAAGCACG
1 TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
* * *
95650556 TGAAAGCCAAATCAGCTATGTCTTTGATTTTTTCCTTGTAAGCACAAGGATGCCAAATCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
95650621 GATCT
131 GATCT
95650626 TGTTTCAGCT
Statistics
Matches: 316, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 314 0.99
207 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (206 bp):
TTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
GATCTGCTTCAATCTAATCATCTGAAAGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATGG
AGACGCCAAAC
Found at i:95656953 original size:20 final size:21
Alignment explanation
Indices: 95656919--95656958 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
95656909 ATTTGCCATT
*
95656919 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAAAAATAA
*
95656940 TACAATTTTA-TAAAAAATA
1 TACAAATTTAGTAAAAAATA
95656959 TATAAGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TACAAATTTAGTAAAAAATAA
Found at i:95656984 original size:14 final size:14
Alignment explanation
Indices: 95656965--95657026 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
95656955 AATATATAAG
95656965 AAATATATAAAATA
1 AAATATATAAAATA
*
95656979 AAATATATAATATA
1 AAATATATAAAATA
* * *
95656993 ATATAATTTATAAGTA
1 AAAT-ATATA-AAATA
*
95657009 AAATATATGACAATA
1 AAATATAT-AAAATA
95657024 AAA
1 AAA
95657027 AATAATGGAT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
14 16 0.44
15 13 0.36
16 7 0.19
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (14 bp):
AAATATATAAAATA
Found at i:95659017 original size:206 final size:206
Alignment explanation
Indices: 95658663--95659215 Score: 894
Period size: 206 Copynumber: 2.7 Consensus size: 206
95658653 ATCTGCTTCT
95658663 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGC
1 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGC
* * * * *
95658728 GAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATACCAAACCATCTTTG
66 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
* * *
95658793 ATCTGCTTCAATCTAATCATCTGAAGGTTAGATCTGTTATGTGTCTGCCCTCCGTCGAATATGGA
131 ATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATGGA
*
95658858 GACGCCAAACG
196 GACACCAAACG
* * *
95658869 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGTTTCAGCGTAAGCACGT
1 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGC
*
95658934 GAAAGCTAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
66 GAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
95658998 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATGG
130 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATGG
*
95659063 AGACACCAAACT
195 AGACACCAAACG
* * * *
95659075 TCAATCTGCTCTCTGA-AATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGC
1 TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGC
* *
95659139 GAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGG
66 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
95659204 ATCTTGCTTCAG
131 ATC-TGCTTCAG
95659216 CTAGATCTGC
Statistics
Matches: 320, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
204 1 0.00
205 107 0.33
206 211 0.66
207 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (206 bp):
TCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGC
GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
ATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATGGA
GACACCAAACG
Found at i:95665746 original size:39 final size:39
Alignment explanation
Indices: 95665701--95665779 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
95665691 TCTAAGAATG
95665701 ATTGTTTATGTGCTATGAATGAAAGACTGAGAATTGCAA
1 ATTGTTTATGTGCTATGAATGAAAGACTGAGAATTGCAA
95665740 ATTGTTTATGTGCTATGAATGAAAGACTGAGAATTGCAA
1 ATTGTTTATGTGCTATGAATGAAAGACTGAGAATTGCAA
95665779 A
1 A
95665780 AGTTTAACGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (39 bp):
ATTGTTTATGTGCTATGAATGAAAGACTGAGAATTGCAA
Found at i:95673069 original size:2 final size:2
Alignment explanation
Indices: 95673057--95673085 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
95673047 CCAACATCTA
95673057 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95673086 TAAAATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95673198 original size:21 final size:19
Alignment explanation
Indices: 95673164--95673225 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
95673154 TAAGTTATGT
95673164 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
95673186 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
95673208 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
95673226 GTATTTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:95673703 original size:20 final size:21
Alignment explanation
Indices: 95673669--95673708 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
95673659 ATTTGCCATT
*
95673669 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAAAAATAA
*
95673690 TACAATTTTA-TAAAAAATA
1 TACAAATTTAGTAAAAAATA
95673709 TATAAGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TACAAATTTAGTAAAAAATAA
Found at i:95673734 original size:14 final size:14
Alignment explanation
Indices: 95673715--95673776 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
95673705 AATATATAAG
95673715 AAATATATAAAATA
1 AAATATATAAAATA
*
95673729 AAATATATAATATA
1 AAATATATAAAATA
* * *
95673743 ATATAATTTATAAGTA
1 AAAT-ATATA-AAATA
*
95673759 AAATATATGACAATA
1 AAATATAT-AAAATA
95673774 AAA
1 AAA
95673777 AATAATGGAT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
14 16 0.44
15 13 0.36
16 7 0.19
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (14 bp):
AAATATATAAAATA
Found at i:95685461 original size:28 final size:29
Alignment explanation
Indices: 95685414--95685471 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
95685404 AAAATAGAGG
*
95685414 ATTAAATTCTTAAAAATAAAAGTAGAATA
1 ATTAAATTCTTAAAAATAAAAATAGAATA
** *
95685443 ATTAAATT-TTAAATTTAAAAATAGTATA
1 ATTAAATTCTTAAAAATAAAAATAGAATA
95685471 A
1 A
95685472 AGGCTTATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (29 bp):
ATTAAATTCTTAAAAATAAAAATAGAATA
Found at i:95687695 original size:2 final size:2
Alignment explanation
Indices: 95687683--95687719 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
95687673 ATAAAATTGC
95687683 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95687720 TGTTCTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:95690523 original size:2 final size:2
Alignment explanation
Indices: 95690516--95690553 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
95690506 ATTGGTTTGG
95690516 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95690554 AACATGTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:95703821 original size:16 final size:17
Alignment explanation
Indices: 95703800--95703831 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
95703790 CAAAAATGAG
95703800 ATTTTAAA-TTTCTTTT
1 ATTTTAAATTTTCTTTT
95703816 ATTTTAAATTTTCTTT
1 ATTTTAAATTTTCTTT
95703832 ATTATACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTAAATTTTCTTTT
Found at i:95704279 original size:43 final size:43
Alignment explanation
Indices: 95704230--95704370 Score: 165
Period size: 43 Copynumber: 3.1 Consensus size: 43
95704220 GCAAAGAATT
95704230 GTAATTCTCTAGACATGTTTAGACAATAGATTGCAATTACATC
1 GTAATTCTCTAGACATGTTTAGACAATAGATTGCAATTACATC
* * *
95704273 GTAATTCTCTAGACATGTTTGGATAATAGATTGTAATTACATC
1 GTAATTCTCTAGACATGTTTAGACAATAGATTGCAATTACATC
* * * *
95704316 GTAATTCTTTATGTCATGTTTGGTAGTACAAATAGAATGCCATTACATC
1 GTAATTCTCTA-GACATG-TT--TAG-AC-AATAGATTGCAATTACATC
95704365 GTAATT
1 GTAATT
95704371 ATTTATGTTA
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
43 50 0.61
44 5 0.06
45 2 0.02
47 2 0.02
48 1 0.01
49 22 0.27
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (43 bp):
GTAATTCTCTAGACATGTTTAGACAATAGATTGCAATTACATC
Found at i:95704361 original size:49 final size:49
Alignment explanation
Indices: 95704254--95704397 Score: 183
Period size: 49 Copynumber: 3.1 Consensus size: 49
95704244 ATGTTTAGAC
* *
95704254 AATAGATTGCAATTACATCGTAATTCTCTA-GACATGTTTGG-A-T---
1 AATAGATTGCAATTACATCGTAATTCTTTATGTCATGTTTGGTAGTACA
*
95704297 AATAGATTGTAATTACATCGTAATTCTTTATGTCATGTTTGGTAGTACA
1 AATAGATTGCAATTACATCGTAATTCTTTATGTCATGTTTGGTAGTACA
* * * *
95704346 AATAGAATGCCATTACATCGTAATTATTTATGTTATGTTTGGTAGTACA
1 AATAGATTGCAATTACATCGTAATTCTTTATGTCATGTTTGGTAGTACA
95704395 AAT
1 AAT
95704398 TGTAATTACA
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
43 28 0.32
44 10 0.11
45 1 0.01
46 1 0.01
49 47 0.54
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (49 bp):
AATAGATTGCAATTACATCGTAATTCTTTATGTCATGTTTGGTAGTACA
Found at i:95705369 original size:12 final size:12
Alignment explanation
Indices: 95705354--95705380 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
95705344 TTATTTGTTT
95705354 TTTGTTTTAATA
1 TTTGTTTTAATA
95705366 TTTGTTTTAATA
1 TTTGTTTTAATA
95705378 TTT
1 TTT
95705381 TTAAATGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTGTTTTAATA
Found at i:95705398 original size:24 final size:25
Alignment explanation
Indices: 95705364--95705410 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
95705354 TTTGTTTTAA
*
95705364 TATTTGTTTTAATAT-TTTTAAATG
1 TATTTGATTTAATATATTTTAAATG
*
95705388 TATTTGATTTATTATATTTTAAA
1 TATTTGATTTAATATATTTTAAA
95705411 ATTTTTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (25 bp):
TATTTGATTTAATATATTTTAAATG
Found at i:95705421 original size:24 final size:26
Alignment explanation
Indices: 95705375--95705422 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
95705365 ATTTGTTTTA
* *
95705375 ATATTTTTAAATGTATTTGATTTATT
1 ATATTTTAAAATGTATTTAATTTATT
95705401 ATATTTTAAAAT-T-TTTAATTTA
1 ATATTTTAAAATGTATTTAATTTA
95705423 ATAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 1 0.05
26 11 0.55
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (26 bp):
ATATTTTAAAATGTATTTAATTTATT
Found at i:95706633 original size:2 final size:2
Alignment explanation
Indices: 95706628--95706660 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
95706618 AAAAAAAAAA
95706628 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95706661 AACTAGTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:95706801 original size:24 final size:24
Alignment explanation
Indices: 95706769--95706815 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
95706759 AAAAATTAAA
* *
95706769 TACATAATATTTTAA-TATAAATAT
1 TACAAAATATATTAAGT-TAAATAT
95706793 TACAAAATATATTAAGTTAAATA
1 TACAAAATATATTAAGTTAAATA
95706816 AGTAAATTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (24 bp):
TACAAAATATATTAAGTTAAATAT
Found at i:95708816 original size:2 final size:2
Alignment explanation
Indices: 95708809--95708843 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
95708799 TGTCATACTT
95708809 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95708844 TAAGTTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95710618 original size:17 final size:17
Alignment explanation
Indices: 95710596--95710628 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
95710586 GATATGATAC
95710596 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
95710613 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
95710629 AATCCGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:95710629 original size:18 final size:17
Alignment explanation
Indices: 95710596--95710629 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
95710586 GATATGATAC
*
95710596 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
95710613 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
95710630 ATCCGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:95710920 original size:22 final size:21
Alignment explanation
Indices: 95710885--95710960 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
95710875 AAAAGGTATC
* *
95710885 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
95710906 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
95710929 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
95710948 TGC-AATCATATCT
1 TACAAATCATATCT
95710961 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:95710977 original size:35 final size:37
Alignment explanation
Indices: 95710914--95711011 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
95710904 ATTACAAAAT
95710914 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
95710950 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
95710985 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
95711012 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:95711019 original size:17 final size:19
Alignment explanation
Indices: 95710921--95711011 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
95710911 AATCATATCT
95710921 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
95710940 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
95710958 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
95710975 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
95710994 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
95711012 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:95712301 original size:47 final size:47
Alignment explanation
Indices: 95712192--95712302 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 47
95712182 CCGGGATAAG
* * *
95712192 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * * *
95712239 CACAAAGTACTTCATCGGAACAAATTCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
95712286 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
95712303 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:95713626 original size:21 final size:20
Alignment explanation
Indices: 95713588--95713627 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
95713578 TTGGACTTCC
**
95713588 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
95713608 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
95713628 TCTAGGCCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:95713875 original size:45 final size:45
Alignment explanation
Indices: 95713820--95714093 Score: 268
Period size: 45 Copynumber: 6.1 Consensus size: 45
95713810 GGAAGGCGAT
* * *
95713820 ATCTGCTATCTTTGATCTGCTCCCCATCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
95713865 ATCTGTTATCTTTGATCTGCTCCCTGTCTAATACAGAGAAGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
95713910 ATCTGCT-TCTTCAATCTGCTCTCTGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
95713954 ATCTGTTATCTCCAATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
95713999 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
95714044 ATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
95714091 ATC
1 ATC
95714094 ATCTTGGACC
Statistics
Matches: 185, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
43 6 0.03
44 44 0.24
45 105 0.57
46 1 0.01
47 18 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:95714290 original size:77 final size:78
Alignment explanation
Indices: 95714033--95714326 Score: 457
Period size: 78 Copynumber: 3.8 Consensus size: 78
95714023 ATGTAAACAC
*
95714033 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
95714098 TGGACCTGCTTCA
66 TGGATCTGCTTCA
*
95714111 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
95714175 TTGAATCTGCTTCA
65 TTGGATCTGCTTCA
* *
95714189 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCC-AATTATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
95714253 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * ** *
95714266 GTGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGATATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
95714327 TGTTTCTTCG
Statistics
Matches: 197, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
77 70 0.36
78 125 0.63
79 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:95714296 original size:37 final size:37
Alignment explanation
Indices: 95714179--95714299 Score: 93
Period size: 37 Copynumber: 3.2 Consensus size: 37
95714169 ATCATCTTGA
*
95714179 ATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCG
1 ATCTGCTTCAGTGAAGGTCAGATCTGCTATGTCTTCG
* * * * ** * * *
95714216 ATCTACTCCCCGTCTAA--TACAGAGATGCCAATTATCTTGG
1 ATCTGCT-TCAGT-GAAGGT-CAGATCTG-CTA-TGTCTTCG
95714256 ATCTGCTTCAGTGAAGGTCAGATCTGCTATGTCTTCG
1 ATCTGCTTCAGTGAAGGTCAGATCTGCTATGTCTTCG
95714293 ATCTGCT
1 ATCTGCT
95714300 CTCCGTCGAA
Statistics
Matches: 58, Mismatches: 19, Indels: 14
0.64 0.21 0.15
Matches are distributed among these distances:
37 20 0.34
38 12 0.21
39 13 0.22
40 13 0.22
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (37 bp):
ATCTGCTTCAGTGAAGGTCAGATCTGCTATGTCTTCG
Found at i:95714321 original size:155 final size:156
Alignment explanation
Indices: 95714033--95714326 Score: 466
Period size: 155 Copynumber: 1.9 Consensus size: 156
95714023 ATGTAAACAC
*
95714033 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
95714098 TGGACCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGA
66 TGGACCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCTGCTCCCCGTCGAATACAGAGA
95714163 TGCCAAATCATCTTGAATCTGCTTCA
131 TGCCAAATCATCTTGAATCTGCTTCA
* *
95714189 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCC-AATTATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * * ** *
95714253 TGGATCTGCTTCAGTGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAT
66 TGGACCTGCTTCAATGAAGGTCCA-ATCTGCTATGTCTTCGATCTGCTCCCCGTCGAATACAGAG
95714317 ATGCCAAATC
130 ATGCCAAATC
95714327 TGTTTCTTCG
Statistics
Matches: 126, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
154 2 0.02
155 70 0.56
156 54 0.43
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (156 bp):
ATGAAGGTCAGATCTGCTATGTCTTCAATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGACCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCTGCTCCCCGTCGAATACAGAGA
TGCCAAATCATCTTGAATCTGCTTCA
Found at i:95722489 original size:13 final size:13
Alignment explanation
Indices: 95722471--95722506 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
95722461 GATAATTAAC
95722471 AAATCATACATAT
1 AAATCATACATAT
*
95722484 AAATCATATATAT
1 AAATCATACATAT
95722497 AAATTCATAC
1 AAA-TCATAC
95722507 CAACTATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATCATACATAT
Found at i:95722865 original size:37 final size:39
Alignment explanation
Indices: 95722771--95722866 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 39
95722761 CACACCAGAA
*
95722771 TGGCGACCAACGCCTCATTGGATAGCTCGAAGCAAATAAG
1 TGGCGACCAACGCCTCATCGGATAGCTCGAAGC-AATAAG
* * * * *
95722811 TGACGGCAAACGTCTCATCGGCTAAGC-CGAAGC-A-AAG
1 TGGCGACCAACGCCTCATCGGAT-AGCTCGAAGCAATAAG
95722848 TGGCGACCAACGCCTCATC
1 TGGCGACCAACGCCTCATC
95722867 AAATCTATCC
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
37 18 0.40
38 1 0.02
40 23 0.51
41 3 0.07
ACGTcount: A:0.30, C:0.29, G:0.25, T:0.16
Consensus pattern (39 bp):
TGGCGACCAACGCCTCATCGGATAGCTCGAAGCAATAAG
Found at i:95730739 original size:26 final size:27
Alignment explanation
Indices: 95730705--95730755 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
95730695 ACTTTTAGAA
*
95730705 TCTTAAAAGGAAGTTGACTTTTGTTAT
1 TCTTAAAAGAAAGTTGACTTTTGTTAT
*
95730732 TCTT-AAAGAAAGTTGATTTTTGTT
1 TCTTAAAAGAAAGTTGACTTTTGTT
95730756 CATAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (27 bp):
TCTTAAAAGAAAGTTGACTTTTGTTAT
Found at i:95731361 original size:21 final size:22
Alignment explanation
Indices: 95731323--95731363 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
95731313 AGAGGGGTTG
*
95731323 AAATTAAATTGTAATTTTTAAA
1 AAATTAAATTGAAATTTTTAAA
95731345 AAATTAAATT-AAATTTTTA
1 AAATTAAATTGAAATTTTTA
95731364 TATTTTTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AAATTAAATTGAAATTTTTAAA
Found at i:95731513 original size:2 final size:2
Alignment explanation
Indices: 95731508--95731546 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
95731498 TGTAGAAGGC
95731508 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95731547 GTACTACAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95736936 original size:9 final size:9
Alignment explanation
Indices: 95736894--95736943 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
95736884 CTTGAATGTA
95736894 TTTTATT-T
1 TTTTATTAT
95736902 TTTTATTAT
1 TTTTATTAT
* *
95736911 TTTAAGTAAT
1 TTTTA-TTAT
95736921 TTATTATTAT
1 TT-TTATTAT
95736931 TTTTATTAT
1 TTTTATTAT
95736940 TTTT
1 TTTT
95736944 GAATTTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 7 0.20
9 16 0.46
10 10 0.29
11 2 0.06
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (9 bp):
TTTTATTAT
Found at i:95741618 original size:5 final size:5
Alignment explanation
Indices: 95741608--95741633 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
95741598 AACATCTACA
95741608 AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG A
95741634 GAGAAGACCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:95741872 original size:20 final size:20
Alignment explanation
Indices: 95741849--95741893 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
95741839 AAATGAATCC
* *
95741849 TAAATTCAGAAAAAATAACA
1 TAAATCCAGAAAAAATAAAA
* *
95741869 TAAACCCAGAAAAATTAAAA
1 TAAATCCAGAAAAAATAAAA
95741889 TAAAT
1 TAAAT
95741894 AATAATAATA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.64, C:0.11, G:0.04, T:0.20
Consensus pattern (20 bp):
TAAATCCAGAAAAAATAAAA
Found at i:95745832 original size:21 final size:21
Alignment explanation
Indices: 95745807--95745847 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
95745797 CAACAAATAA
*
95745807 TTTAAAAATTAAAAATATATT
1 TTTAAAAAATAAAAATATATT
95745828 TTTAAAAAATAAAAATATAT
1 TTTAAAAAATAAAAATATAT
95745848 ATATAGCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TTTAAAAAATAAAAATATATT
Found at i:95745956 original size:23 final size:24
Alignment explanation
Indices: 95745912--95745967 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
95745902 TCAACTCTTT
*
95745912 TTAAAAAATTATAAATAAAATTTAA
1 TTAAAAAA-TAAAAATAAAATTTAA
* *
95745937 TTAAAAAATAAAAAT-TAATTTGA
1 TTAAAAAATAAAAATAAAATTTAA
95745960 -TAAAAAAT
1 TTAAAAAAT
95745968 GTAAATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.29
23 6 0.21
24 6 0.21
25 8 0.29
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (24 bp):
TTAAAAAATAAAAATAAAATTTAA
Found at i:95746560 original size:20 final size:21
Alignment explanation
Indices: 95746525--95746567 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
95746515 CATTAAAATC
95746525 TTTAAATTAGATTTTTAATTT
1 TTTAAATTAGATTTTTAATTT
*
95746546 TTTAAA-TATATTTTTAATTT
1 TTTAAATTAGATTTTTAATTT
95746566 TT
1 TT
95746568 ATGAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTAAATTAGATTTTTAATTT
Found at i:95752487 original size:30 final size:29
Alignment explanation
Indices: 95752453--95752513 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
95752443 ATGAATCTAA
95752453 AGTTTTGGCACTAAGTGTGCGATTTAAACT
1 AGTTTTGGCACTAAGTGTGCGATTT-AACT
95752483 AGTTTTGGCACTAAGTGTGCGATTTAACT
1 AGTTTTGGCACTAAGTGTGCGATTTAACT
95752512 AG
1 AG
95752514 CTTCAGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 6 0.19
30 25 0.81
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (29 bp):
AGTTTTGGCACTAAGTGTGCGATTTAACT
Found at i:95761708 original size:27 final size:26
Alignment explanation
Indices: 95761671--95761785 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
95761661 AGCATGGCTG
* *
95761671 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
95761697 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
95761725 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
95761752 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
95761779 CCAGAAC
1 CCAGAAC
95761786 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:95761730 original size:54 final size:54
Alignment explanation
Indices: 95761671--95761785 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
95761661 AGCATGGCTG
*
95761671 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
95761725 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
95761779 CCAGAAC
1 CCAGAAC
95761786 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:95763427 original size:26 final size:26
Alignment explanation
Indices: 95763391--95763495 Score: 132
Period size: 26 Copynumber: 4.3 Consensus size: 26
95763381 CATGAAATTC
95763391 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
95763417 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
95763443 TTATCATGGAACA---ACC---CCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
95763463 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
95763489 TTATCAT
1 TTATCAT
95763496 TTGTATCAAT
Statistics
Matches: 71, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
20 16 0.23
23 6 0.08
26 49 0.69
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:95763510 original size:30 final size:30
Alignment explanation
Indices: 95763476--95763537 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
95763466 TCATGGAACA
95763476 TTTACCTAACCTATTATC-ATTTGTATCAAT
1 TTTACCTAA-CTATTATCAATTTGTATCAAT
*
95763506 TTTACCTAATTATTATCAATTTGTATCAAT
1 TTTACCTAACTATTATCAATTTGTATCAAT
95763536 TT
1 TT
95763538 GTCTACAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.31, C:0.16, G:0.03, T:0.50
Consensus pattern (30 bp):
TTTACCTAACTATTATCAATTTGTATCAAT
Found at i:95763538 original size:10 final size:10
Alignment explanation
Indices: 95763490--95763539 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
95763480 CCTAACCTAT
95763490 TATC-ATTTG
1 TATCAATTTG
95763499 TATCAATTT-
1 TATCAATTTG
*
95763508 TACCTAATTAT-
1 TATC-AATT-TG
95763519 TATCAATTTG
1 TATCAATTTG
95763529 TATCAATTTG
1 TATCAATTTG
95763539 T
1 T
95763540 CTACAACAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
9 8 0.23
10 23 0.66
11 4 0.11
ACGTcount: A:0.30, C:0.12, G:0.06, T:0.52
Consensus pattern (10 bp):
TATCAATTTG
Found at i:95767473 original size:27 final size:26
Alignment explanation
Indices: 95767436--95767550 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
95767426 AGCATGGCTG
* *
95767436 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
95767462 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
95767490 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
95767517 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
95767544 CCAGAAC
1 CCAGAAC
95767551 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:95767500 original size:54 final size:54
Alignment explanation
Indices: 95767436--95767550 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
95767426 AGCATGGCTG
*
95767436 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
95767490 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
95767544 CCAGAAC
1 CCAGAAC
95767551 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:95769196 original size:26 final size:26
Alignment explanation
Indices: 95769160--95769269 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
95769150 CATGAAATTC
95769160 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
95769186 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
95769212 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
95769238 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
95769264 TTATCA
1 TTATCA
95769270 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:95779024 original size:24 final size:23
Alignment explanation
Indices: 95778997--95779056 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
95778987 ATTTATAAAT
**
95778997 TAAAAATATACATGATTATGTACA
1 TAAAAATATACAT-AAAATGTACA
*
95779021 TAAAAGTAT-CGATAAAATGTACA
1 TAAAAATATAC-ATAAAATGTACA
95779044 TAAAAAT-TACATA
1 TAAAAATATACATA
95779057 TGATAATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
22 4 0.13
23 16 0.53
24 10 0.33
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.30
Consensus pattern (23 bp):
TAAAAATATACATAAAATGTACA
Found at i:95779910 original size:27 final size:27
Alignment explanation
Indices: 95779879--95779934 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
95779869 TCATTGCACA
* *
95779879 TAGAACATTTCATGGAGATCAACTAAT
1 TAGAACATCTCATGAAGATCAACTAAT
* *
95779906 TAGAACGTCTCATGAAGGTCAACTAAT
1 TAGAACATCTCATGAAGATCAACTAAT
95779933 TA
1 TA
95779935 AATGAGGCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
TAGAACATCTCATGAAGATCAACTAAT
Found at i:95781169 original size:2 final size:2
Alignment explanation
Indices: 95781162--95781212 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
95781152 AAAACTTAAG
95781162 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95781204 TA TA TA TA T
1 TA TA TA TA T
95781213 TATGAAAATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95785859 original size:2 final size:2
Alignment explanation
Indices: 95785852--95785879 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
95785842 AATTCATTCG
95785852 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
95785880 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:95786157 original size:39 final size:39
Alignment explanation
Indices: 95786134--95786238 Score: 183
Period size: 39 Copynumber: 2.7 Consensus size: 39
95786124 TCCCAGCACG
* *
95786134 TAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATA
1 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
*
95786173 TAGCCTGCGGATCTCATGTCCAGATATATTTCTAGCATA
1 TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
95786212 TAGCCTGCGGATCTCATGTCCGGATAT
1 TAGCCTGCGGATCTCATGTCCGGATAT
95786239 TTCCAATCTC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (39 bp):
TAGCCTGCGGATCTCATGTCCGGATATATTTCTAGCATA
Found at i:95794390 original size:39 final size:39
Alignment explanation
Indices: 95794347--95794471 Score: 162
Period size: 39 Copynumber: 3.2 Consensus size: 39
95794337 GATCTTTAAC
** * * *
95794347 CCGGATAT-TTTCCAAGCACGTAGCCTGTGGACCTCAAGT
1 CCGGATATATTT-CAAGCATATAGCCTGCGGATCTCATGT
*
95794386 CCGGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATATTTCAAGCATATAGCCTGCGGATCTCATGT
*
95794425 CCGGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATATTTCAAGCATATAGCCTGCGGATCTCATGT
*
95794464 CCAGATAT
1 CCGGATAT
95794472 TTCCAATCTC
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 75 0.96
40 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCAAGCATATAGCCTGCGGATCTCATGT
Found at i:95802104 original size:11 final size:11
Alignment explanation
Indices: 95802088--95802112 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
95802078 ATTATTCTAC
95802088 AAAAAAAAAGA
1 AAAAAAAAAGA
95802099 AAAAAAAAAGA
1 AAAAAAAAAGA
95802110 AAA
1 AAA
95802113 CAAGGTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:95804468 original size:40 final size:40
Alignment explanation
Indices: 95804423--95804590 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
95804413 CGGAATATAA
*
95804423 CCGGATATAATCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * * *
95804463 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
95804503 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
95804543 CCGGATATAATTTCCAGCATAATTGTCTTCGGAG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGG-GTCTTAGC
95804583 CCGGATAT
1 CCGGATAT
95804591 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 104 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:95804573 original size:80 final size:80
Alignment explanation
Indices: 95804439--95804590 Score: 193
Period size: 80 Copynumber: 1.9 Consensus size: 80
95804429 ATAATCATGT
*
95804439 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGG-GTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGAG-CTTAGC
95804503 CCGGATATAGCCACTA
65 CCGGATATAGCCACTA
* * ** * *
95804519 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGAGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGAGCTTAG
95804582 CCCGGATAT
64 CCCGGATAT
95804591 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
79 3 0.05
80 58 0.94
81 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGAGCTTAGCC
CGGATATAGCCACTA
Found at i:95809991 original size:50 final size:50
Alignment explanation
Indices: 95809697--95809983 Score: 412
Period size: 50 Copynumber: 5.7 Consensus size: 50
95809687 TACTAAGGTA
* * * *
95809697 ATATGTGAGCCAGTGTAAAACCATGTTTGGGACATGGCATCGGCTCCGAT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT
* *
95809747 ATATGAGAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCAGCACCGAT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT
*
95809797 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGAT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT
* * * * **
95809847 ATATGAGAACCAGTATAAGACCATGTCTGGGACATGACATCGACACTAAT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT
* * *
95809897 ATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCACTGAT
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT
* *
95809947 ATATGAGAACCAGTGTAAGACTATGTCTGGGACATGG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGG
95809984 TATTGGCATG
Statistics
Matches: 213, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 213 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (50 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGAT
Found at i:95811935 original size:47 final size:45
Alignment explanation
Indices: 95811865--95812179 Score: 229
Period size: 47 Copynumber: 6.8 Consensus size: 45
95811855 TTATTTGTGT
*
95811865 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TATGATGAGA
95811911 GCCAGTGTAAGATCATGTCTGGGACATGGCATCGG--TATTGAGATGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTA-T--GATGAGA
* * *
95811959 GCTAGCGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT--ATGATG-AGA
* * ** *
95812005 GTCAGTGTAAGACATGTCT--GACATGCATCAG-CTGCGA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTATGATGA-GA
*
95812047 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATG-TGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C---TATGATGAGA
* * * *
95812097 GCTAGTGTAAAACCATGTCTGAGACATGACATC-GACT-TGATGGATGA
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTATGAT-GA-GA
95812144 GCCAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
95812180 ATTATACCCT
Statistics
Matches: 217, Mismatches: 22, Indels: 58
0.73 0.07 0.20
Matches are distributed among these distances:
40 1 0.00
41 1 0.00
42 14 0.06
43 9 0.04
44 14 0.06
45 9 0.04
46 49 0.23
47 57 0.26
48 28 0.13
49 2 0.01
50 29 0.13
51 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTATGATGAGA
Found at i:95812015 original size:46 final size:46
Alignment explanation
Indices: 95811867--95812079 Score: 201
Period size: 46 Copynumber: 4.6 Consensus size: 46
95811857 ATTTGTGTGC
* * *
95811867 CAGTGTAAGACATGTCTGGGACATGCATCGGCCAT--ATTATGAGAGC
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGA-GATGAGAGT
* ** *
95811913 CAGTGTAAGATCATGTCTGGGACATGGCATCGGTATTGAGATGAGAG-
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGAGAGT
*
95811960 CTAGCGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGT
1 C-AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATG-AGAGT
*
95812007 CAGTGTAAGACATGTCT--GACATGCATCAG-CTGCGAGAT--GTGT
1 CAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGAGAGT
95812049 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATC
95812080 GGCACAGATA
Statistics
Matches: 144, Mismatches: 10, Indels: 26
0.80 0.06 0.14
Matches are distributed among these distances:
42 12 0.08
43 9 0.06
44 18 0.12
45 5 0.03
46 45 0.31
47 32 0.22
48 22 0.15
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGAGAGT
Found at i:95812043 original size:44 final size:42
Alignment explanation
Indices: 95811965--95812067 Score: 145
Period size: 44 Copynumber: 2.3 Consensus size: 42
95811955 GAGAGCTAGC
95811965 GTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAAGTCAGT
1 GTAAGACATGTCT--GACATGCATCAGCCTCGAGATGT--GTCAGT
95812011 GTAAGACATGTCTGACATGCATCAG-CTGCGAGATGTGTCAGT
1 GTAAGACATGTCTGACATGCATCAGCCT-CGAGATGTGTCAGT
95812053 GTAAGACCATGTCTG
1 GTAAGA-CATGTCTG
95812068 GGACATGGCA
Statistics
Matches: 55, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
42 12 0.22
43 10 0.18
44 20 0.36
46 13 0.24
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (42 bp):
GTAAGACATGTCTGACATGCATCAGCCTCGAGATGTGTCAGT
Found at i:95820981 original size:26 final size:26
Alignment explanation
Indices: 95820952--95821011 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
95820942 TCCCTTTGAA
* * *
95820952 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
95820978 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
95821006 TCATTC
1 TCATTC
95821012 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:95824919 original size:93 final size:93
Alignment explanation
Indices: 95824806--95824977 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
95824796 CGCCCATAAG
* *
95824806 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95824871 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
95824899 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95824964 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
95824978 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:95824974 original size:46 final size:46
Alignment explanation
Indices: 95824799--95824974 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
95824789 TGTAACCCGC
* * *
95824799 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
95824845 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
95824895 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
95824938 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
95824975 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:95832456 original size:93 final size:93
Alignment explanation
Indices: 95832344--95832515 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
95832334 CGCCCATAAG
* *
95832344 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95832409 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
95832437 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
95832502 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
95832516 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:95832512 original size:46 final size:46
Alignment explanation
Indices: 95832337--95832512 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
95832327 TGTAACCCGC
* * *
95832337 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
95832383 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
95832433 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
95832476 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
95832513 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:95836311 original size:20 final size:20
Alignment explanation
Indices: 95836288--95836328 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
95836278 TTTCATTTAG
*
95836288 CTCACATGAGCTTCAGTTAA
1 CTCACATGAACTTCAGTTAA
* *
95836308 CTCATATGAATTTCAGTTAA
1 CTCACATGAACTTCAGTTAA
95836328 C
1 C
95836329 CCTAATGGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CTCACATGAACTTCAGTTAA
Found at i:95839283 original size:27 final size:27
Alignment explanation
Indices: 95839246--95839364 Score: 105
Period size: 27 Copynumber: 4.3 Consensus size: 27
95839236 AGCATGGCTG
*
95839246 CCAGAACAGATAAT-GTGACAGAGTCA
1 CCAGAACAGATAATCGTGACAGAGCCA
*
95839272 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGACAGAGCCA
* *
95839300 CCAGAACAGATATAGTGGCAGAGCAGAGCCA
1 CCAGAACAGATA-A-TCG-TGA-CAGAGCCA
* * * * *
95839331 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATAATCGTGACAGAGCCA
95839358 CCAGAAC
1 CCAGAAC
95839365 GCTTCCTCCA
Statistics
Matches: 75, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
26 5 0.07
27 29 0.39
28 17 0.23
29 4 0.05
30 1 0.01
31 19 0.25
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGACAGAGCCA
Found at i:95841009 original size:26 final size:26
Alignment explanation
Indices: 95840971--95841080 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
95840961 CATGAAATTC
*
95840971 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
95840997 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
95841023 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
* *
95841049 TTATCATGGAGCATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
95841075 TTATCA
1 TTATCA
95841081 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:95842368 original size:18 final size:18
Alignment explanation
Indices: 95842347--95842406 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
95842337 TGAAATAGTT
95842347 AACAATATTAACTATTTA
1 AACAATATTAACTATTTA
* * *
95842365 AACATTTTTATTGAAATAGTT-
1 AACA---ATATT-AACTATTTA
95842386 AACAATATTAACTATTTA
1 AACAATATTAACTATTTA
95842404 AAC
1 AAC
95842407 TAATTATAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
17 6 0.19
18 11 0.35
21 8 0.26
22 6 0.19
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (18 bp):
AACAATATTAACTATTTA
Found at i:95842369 original size:39 final size:39
Alignment explanation
Indices: 95842326--95842406 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
95842316 ATTTGGTGTC
95842326 AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
1 AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
95842365 AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
1 AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
95842404 AAC
1 AAC
95842407 TAATTATAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (39 bp):
AACATTTTTATTGAAATAGTTAACAATATTAACTATTTA
Found at i:95842389 original size:21 final size:21
Alignment explanation
Indices: 95842326--95842389 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
95842316 ATTTGGTGTC
95842326 AACATTTTTATTGAAATAGTT
1 AACATTTTTATTGAAATAGTT
* * *
95842347 AACA---ATATT-AACTATTT
1 AACATTTTTATTGAAATAGTT
95842364 AAACATTTTTATTGAAATAGTT
1 -AACATTTTTATTGAAATAGTT
95842386 AACA
1 AACA
95842390 ATATTAACTA
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
17 6 0.19
18 8 0.25
21 12 0.38
22 6 0.19
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (21 bp):
AACATTTTTATTGAAATAGTT
Found at i:95844632 original size:23 final size:23
Alignment explanation
Indices: 95844606--95844649 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
95844596 CGCAAAAATA
* *
95844606 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
95844629 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
95844650 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:95849756 original size:30 final size:30
Alignment explanation
Indices: 95849686--95849770 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
95849676 GGTAACCTCA
* * *
95849686 ATATAATGTTAGCTTGTGTGAGCAATATTG
1 ATATAATGTCAGCTTGTGTGAGCAACACTG
* *
95849716 TTATAATGTCAGCTTGTGTGAGCAACCCTG
1 ATATAATGTCAGCTTGTGTGAGCAACACTG
* *
95849746 ATATATTGTCAGCTTGTATGAGCAA
1 ATATAATGTCAGCTTGTGTGAGCAA
95849771 TTTATTCTCG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (30 bp):
ATATAATGTCAGCTTGTGTGAGCAACACTG
Found at i:95849845 original size:18 final size:19
Alignment explanation
Indices: 95849824--95849862 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
95849814 GGAAATATTC
*
95849824 ATTTGATTG-GAAATGGAA
1 ATTTAATTGTGAAATGGAA
95849842 ATTTAATTGTGAAATGGAA
1 ATTTAATTGTGAAATGGAA
95849861 AT
1 AT
95849863 GAAATGGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (19 bp):
ATTTAATTGTGAAATGGAA
Found at i:95860496 original size:2 final size:2
Alignment explanation
Indices: 95860489--95860532 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
95860479 ACCATAACTA
95860489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95860531 AT
1 AT
95860533 TGTCAGGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95863892 original size:18 final size:16
Alignment explanation
Indices: 95863871--95863904 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
95863861 ATAGATAATC
95863871 ATATTATATTATATAAAT
1 ATATTAT-TTAT-TAAAT
95863889 ATATTATTTATTAAAT
1 ATATTATTTATTAAAT
95863905 TTTATATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATTATTTATTAAAT
Found at i:95870462 original size:18 final size:18
Alignment explanation
Indices: 95870423--95870463 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
95870413 GCCTGATGGT
* *
95870423 TCTTCTCCATCATCTTCC
1 TCTTCTCCATCATCATCA
95870441 TCTTCTCCATCATCATCA
1 TCTTCTCCATCATCATCA
95870459 TCTTC
1 TCTTC
95870464 CAAAGCTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44
Consensus pattern (18 bp):
TCTTCTCCATCATCATCA
Found at i:95876851 original size:28 final size:29
Alignment explanation
Indices: 95876820--95876879 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
95876810 GATTTTTGAC
* *
95876820 AAAAATGTTAATT-AGGGATTAAATTGTG
1 AAAAATGTAAATTAAGGGATTAAATTATG
*
95876848 AAAAGTGTAAATTAAGGGATTAAATTATG
1 AAAAATGTAAATTAAGGGATTAAATTATG
95876877 AAA
1 AAA
95876880 TAAATGTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (29 bp):
AAAAATGTAAATTAAGGGATTAAATTATG
Found at i:95877414 original size:43 final size:44
Alignment explanation
Indices: 95877367--95877520 Score: 165
Period size: 43 Copynumber: 3.6 Consensus size: 44
95877357 TCGATATGTG
*
95877367 ATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGAT
1 ATTACATGTAAGACCATGTCTGGGACATTGACATTGATATTGAT
* * * *
95877410 ATTACGTGTAAGACCATGTCTGGGACATTGACATCGTTAATCGAT
1 ATTACATGTAAGACCATGTCTGGGACATTGACATTGAT-ATTGAT
* * * *
95877455 -TT-CGTGTAAGACCTTGTCTGGGACAGTGACATAGATATGTGAT
1 ATTACATGTAAGACCATGTCTGGGACATTGACATTGATAT-TGAT
*
95877498 A--ACATGTAAGACCATATCTGGGA
1 ATTACATGTAAGACCATGTCTGGGA
95877521 TATGGCATTG
Statistics
Matches: 94, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
42 2 0.02
43 84 0.89
44 3 0.03
45 5 0.05
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (44 bp):
ATTACATGTAAGACCATGTCTGGGACATTGACATTGATATTGAT
Found at i:95878976 original size:13 final size:13
Alignment explanation
Indices: 95878931--95878970 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
95878921 TAAAGTAATT
95878931 AAATAAAA-AATA-
1 AAATAAAAGAA-AG
95878943 AAATAAAAGAAAG
1 AAATAAAAGAAAG
95878956 AAATAAAAGAAAG
1 AAATAAAAGAAAG
95878969 AA
1 AA
95878971 TGAAAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (13 bp):
AAATAAAAGAAAG
Found at i:95880581 original size:26 final size:28
Alignment explanation
Indices: 95880512--95880585 Score: 80
Period size: 32 Copynumber: 2.6 Consensus size: 28
95880502 GAAGTGAATG
*
95880512 AATGAATATTTGCTAAGTTTGAATGGCAT
1 AATGAATATTTGCTAAGTTTGAACGG-AT
*
95880541 AATGAATGATATTTGCTAATTTTGAACGG-T
1 AATG-A--ATATTTGCTAAGTTTGAACGGAT
95880571 -ATGAATATTTGCTAA
1 AATGAATATTTGCTAA
95880586 CCTTGACACA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
26 11 0.28
28 1 0.03
29 7 0.17
30 2 0.05
32 19 0.47
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.39
Consensus pattern (28 bp):
AATGAATATTTGCTAAGTTTGAACGGAT
Found at i:95882984 original size:20 final size:21
Alignment explanation
Indices: 95882944--95882985 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
95882934 ACAAACATTA
95882944 AATTTTTATATATAAATATAT
1 AATTTTTATATATAAATATAT
95882965 AATTTTGTATATATAAATATA
1 AATTTT-TATATATAAATATA
95882986 GATAGCCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
AATTTTTATATATAAATATAT
Found at i:95886110 original size:15 final size:15
Alignment explanation
Indices: 95886090--95886129 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
95886080 CTAGATTACT
95886090 TCCTAGGGTTGTCAA
1 TCCTAGGGTTGTCAA
*
95886105 TCCTAGGGTCGTCAA
1 TCCTAGGGTTGTCAA
*
95886120 TTCTAGGGTT
1 TCCTAGGGTT
95886130 TAAGCATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.17, C:0.20, G:0.28, T:0.35
Consensus pattern (15 bp):
TCCTAGGGTTGTCAA
Found at i:95886758 original size:10 final size:11
Alignment explanation
Indices: 95886734--95886758 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
95886724 ATGTAGGCGC
95886734 AAAATGAGTGA
1 AAAATGAGTGA
95886745 AAAATGAGTGA
1 AAAATGAGTGA
95886756 AAA
1 AAA
95886759 CCGAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (11 bp):
AAAATGAGTGA
Found at i:95886860 original size:29 final size:30
Alignment explanation
Indices: 95886805--95886861 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
95886795 CTAGACCCTC
*
95886805 CTACATGGGCTGGGCACACGGCTGTGTGAG
1 CTACATGGGCTGGCCACACGGCTGTGTGAG
*
95886835 CTACATGGGCT-GCCACATGGCTGTGTG
1 CTACATGGGCTGGCCACACGGCTGTGTG
95886862 CTAGACCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.16, C:0.25, G:0.37, T:0.23
Consensus pattern (30 bp):
CTACATGGGCTGGCCACACGGCTGTGTGAG
Found at i:95887828 original size:17 final size:17
Alignment explanation
Indices: 95887806--95887839 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
95887796 CTCACTATAG
95887806 CTATACTATTAATTGAT
1 CTATACTATTAATTGAT
95887823 CTATACTATTAATTGAT
1 CTATACTATTAATTGAT
95887840 AAGTGCACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
CTATACTATTAATTGAT
Found at i:95892247 original size:26 final size:26
Alignment explanation
Indices: 95892218--95892299 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
95892208 TGGTACAAAT
95892218 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95892244 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95892270 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95892296 TGAT
1 TGAT
95892300 GGACATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95895649 original size:26 final size:26
Alignment explanation
Indices: 95895620--95895690 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
95895610 CTTCAAATTA
*
95895620 TTTTATATATTATTTATTTTAAACTG
1 TTTTATATACTATTTATTTTAAACTG
* *
95895646 TTTTATATACTATATATTTTAAATTG
1 TTTTATATACTATTTATTTTAAACTG
95895672 TTTTATATACTATTTATTT
1 TTTTATATACTATTTATTT
95895691 GTTATCTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (26 bp):
TTTTATATACTATTTATTTTAAACTG
Found at i:95895808 original size:3 final size:3
Alignment explanation
Indices: 95895786--95895849 Score: 58
Period size: 3 Copynumber: 21.3 Consensus size: 3
95895776 TTCTCTACCT
* * * * * *
95895786 TTA TTA GTA TTA TTA CTA TTA TTA TT- TTCG TTG TTG GTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
95895831 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
95895850 CACCATTATC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
2 2 0.04
3 48 0.92
4 2 0.04
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:95899277 original size:3 final size:3
Alignment explanation
Indices: 95899271--95899426 Score: 110
Period size: 3 Copynumber: 52.7 Consensus size: 3
95899261 TTATTTATAT
* * *
95899271 TTA TTA TT- TTAA TTA TT- TTA TT- TT- TTC TTA TTA CTG TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
95899313 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
95899361 TCA TCA TTA GTA CTTGT TTA TTC TTA CTT- TTA TCA TTA TTA -TA GTT-
1 TTA TTA TTA TTA -TT-A TTA TTA TTA -TTA TTA TTA TTA TTA TTA -TTA
95899407 TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
95899427 TATTTGTTCT
Statistics
Matches: 127, Mismatches: 15, Indels: 22
0.77 0.09 0.13
Matches are distributed among these distances:
2 14 0.11
3 105 0.83
4 8 0.06
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:95899277 original size:9 final size:8
Alignment explanation
Indices: 95899259--95899350 Score: 76
Period size: 9 Copynumber: 10.2 Consensus size: 8
95899249 CATTTAATTT
95899259 TTTTATTTA
1 TTTTA-TTA
95899268 TATTTATTA
1 T-TTTATTA
95899277 TTTTAATTA
1 TTTT-ATTA
*
95899286 TTTTATTTT
1 TTTTA-TTA
95899295 TTCTTATTA
1 TT-TTATTA
*
95899304 CTGTTATTA
1 -TTTTATTA
95899313 TTATTATTA
1 TT-TTATTA
95899322 TTATTATTA
1 TT-TTATTA
95899331 TTATTATTA
1 TT-TTATTA
95899340 TTATTATTA
1 TT-TTATTA
95899349 TT
1 TT
95899351 ATCATCATCA
Statistics
Matches: 73, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
8 5 0.07
9 60 0.82
10 8 0.11
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.70
Consensus pattern (8 bp):
TTTTATTA
Found at i:95901821 original size:113 final size:113
Alignment explanation
Indices: 95901617--95901822 Score: 304
Period size: 113 Copynumber: 1.8 Consensus size: 113
95901607 ATTTGTGATC
* * *
95901617 GTCGGTTTATTCGACTAGTGCTGGGCACACAATTAAAATCGTCAATTTATCCGATTAGTGCTGGG
1 GTCGATTTATTCGACTAGTGCTGGGCACACAATTAAAATCATCAATTTATCCGACTAGTGCTGGG
*
95901682 CGCAAATCTTTATCGATTTGTCCGACTAACGCTAGACGCAAATCTAAT
66 CGCAAATATTTATCGATTTGTCCGACTAACGCTAGACGCAAATCTAAT
* * ** *
95901730 GTCGATTTATTCGACTAGTGCTGGGCACACAATTAATATTATCTGTTTATCTGACTAGTGCTGGG
1 GTCGATTTATTCGACTAGTGCTGGGCACACAATTAAAATCATCAATTTATCCGACTAGTGCTGGG
* * *
95901795 TGCAAATATTTGTCGATTTGTTCGACTA
66 CGCAAATATTTATCGATTTGTCCGACTA
95901823 GTGCAAGACA
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
113 81 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (113 bp):
GTCGATTTATTCGACTAGTGCTGGGCACACAATTAAAATCATCAATTTATCCGACTAGTGCTGGG
CGCAAATATTTATCGATTTGTCCGACTAACGCTAGACGCAAATCTAAT
Found at i:95906808 original size:19 final size:19
Alignment explanation
Indices: 95906784--95906831 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
95906774 GTCTGTACTC
95906784 ACAGAGCCTAGGTCGTGTA
1 ACAGAGCCTAGGTCGTGTA
*
95906803 ACAGAGCCTAGGTCGTGTG
1 ACAGAGCCTAGGTCGTGTA
*
95906822 ACAAAGCCTA
1 ACAGAGCCTA
95906832 CGCGGTGTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (19 bp):
ACAGAGCCTAGGTCGTGTA
Found at i:95908157 original size:21 final size:21
Alignment explanation
Indices: 95908133--95908173 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
95908123 CAAAATGCTA
*
95908133 ACAGAGGCACTAAAGTGCAAT
1 ACAGAGGCACCAAAGTGCAAT
95908154 ACAGAGGCACCAAAGTGCAA
1 ACAGAGGCACCAAAGTGCAA
95908174 ACCCGTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (21 bp):
ACAGAGGCACCAAAGTGCAAT
Found at i:95908796 original size:41 final size:41
Alignment explanation
Indices: 95908739--95908822 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
95908729 CCCTATAACC
*
95908739 TTTTATACTTTATTCAATTTAGTCCTTAACATCAAAACTAT
1 TTTTATACTTTATTCAATTTAGTCCTTAACACCAAAACTAT
95908780 TTTTATACTTTATTCAATTTAGTCCTTAACACCAAAACTAT
1 TTTTATACTTTATTCAATTTAGTCCTTAACACCAAAACTAT
95908821 TT
1 TT
95908823 AAATTTTCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.18, G:0.02, T:0.46
Consensus pattern (41 bp):
TTTTATACTTTATTCAATTTAGTCCTTAACACCAAAACTAT
Found at i:95911205 original size:26 final size:26
Alignment explanation
Indices: 95911166--95911238 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
95911156 TATTTGCTCG
* * *
95911166 AAATTTTACCAGGGGTAAAATGGTCA
1 AAATTTTACTAGGGGTAAAATCGACA
*
95911192 AAATTTTACTAGGGGTAAGATCGACA
1 AAATTTTACTAGGGGTAAAATCGACA
*
95911218 AAATTTTGCT-GAGGGTAAAAT
1 AAATTTTACTAG-GGGTAAAAT
95911239 AGGAATGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 1 0.03
26 39 0.98
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATCGACA
Found at i:95918474 original size:9 final size:9
Alignment explanation
Indices: 95918436--95918483 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
95918426 AAAGTATATT
95918436 ATAATAATATA
1 ATAA-AATA-A
*
95918447 ATATAATAA
1 ATAAAATAA
* *
95918456 AGAAATTAA
1 ATAAAATAA
95918465 ATAAAATAA
1 ATAAAATAA
95918474 ATAAAATAA
1 ATAAAATAA
95918483 A
1 A
95918484 AGAAAGAATG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
9 24 0.77
10 4 0.13
11 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (9 bp):
ATAAAATAA
Found at i:95918531 original size:19 final size:17
Alignment explanation
Indices: 95918509--95918547 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
95918499 GAAACTGAGC
95918509 AGGGAAAGAAAGAAAGAAA
1 AGGGAAAG-AA-AAAGAAA
95918528 AGGGAAAGAAAAAGAAA
1 AGGGAAAGAAAAAGAAA
95918545 AGG
1 AGG
95918548 AAAATTTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.50
18 2 0.10
19 8 0.40
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (17 bp):
AGGGAAAGAAAAAGAAA
Found at i:95920305 original size:20 final size:20
Alignment explanation
Indices: 95920276--95920322 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
95920266 GGCCTGGCCC
*
95920276 CACGGCCATGTCCCAAGCCA
1 CACGGGCATGTCCCAAGCCA
* *
95920296 CACGGGCATGTCCTAGGCCA
1 CACGGGCATGTCCCAAGCCA
95920316 CACGGGC
1 CACGGGC
95920323 GTGTGCCCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.40, G:0.28, T:0.11
Consensus pattern (20 bp):
CACGGGCATGTCCCAAGCCA
Found at i:95920797 original size:2 final size:2
Alignment explanation
Indices: 95920790--95920847 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
95920780 AAAATTGAAA
95920790 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
95920832 AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG
95920848 CAAATGGGGA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:95927836 original size:14 final size:15
Alignment explanation
Indices: 95927812--95927840 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
95927802 TTGTTAATAT
95927812 CCATTTGTCTGCAAA
1 CCATTTGTCTGCAAA
95927827 CCATTT-TCTGCAAA
1 CCATTTGTCTGCAAA
95927841 ATTGTGCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (15 bp):
CCATTTGTCTGCAAA
Found at i:95928671 original size:49 final size:49
Alignment explanation
Indices: 95928518--95928660 Score: 259
Period size: 49 Copynumber: 2.9 Consensus size: 49
95928508 ACATGATAGC
* *
95928518 GATTAATGTATTTATTATACTTGTCAATATAACGATGGTTTTATCTAGA
1 GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATCTAGA
95928567 GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATCTAGA
1 GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATCTAGA
*
95928616 GATTAATGTATTTAGTATACTTGTCAATACAATGATGGTTTTATC
1 GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATC
95928661 CATCATTTAA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 91 1.00
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.43
Consensus pattern (49 bp):
GATTAATGTATTTAGTATACTTGTCAATACAACGATGGTTTTATCTAGA
Found at i:95929679 original size:18 final size:18
Alignment explanation
Indices: 95929646--95929698 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 18
95929636 CTTATATTAT
* *
95929646 ATTATTTTAATATTTTATA
1 ATTATTATAAT-TTTTTTA
95929665 ATT-TTATAATTTTTTTA
1 ATTATTATAATTTTTTTA
*
95929682 TTTATTA-AATTTTTTTA
1 ATTATTATAATTTTTTTA
95929699 TATAGTCATC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 18 0.60
18 9 0.30
19 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTATTATAATTTTTTTA
Found at i:95930318 original size:17 final size:16
Alignment explanation
Indices: 95930292--95930326 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
95930282 TATTAAATGT
*
95930292 ATATAAATATTTAAAA
1 ATATAAATATATAAAA
95930308 ATATAATATATATAAAA
1 ATATAA-ATATATAAAA
95930325 AT
1 AT
95930327 GTCAGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATAAATATATAAAA
Found at i:95930455 original size:9 final size:9
Alignment explanation
Indices: 95930443--95930497 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
95930433 AAAAAGGTAA
95930443 AAAAATTTT
1 AAAAATTTT
95930452 AAAAATATTT
1 AAAAAT-TTT
95930462 -AAAATTATT
1 AAAAATT-TT
*
95930471 AAAAATTAT
1 AAAAATTTT
*
95930480 AAATAA-TAT
1 AAA-AATTTT
95930489 AAAAATTTT
1 AAAAATTTT
95930498 TATATTACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
8 3 0.08
9 25 0.64
10 11 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAAAATTTT
Found at i:95930531 original size:12 final size:12
Alignment explanation
Indices: 95930514--95930545 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
95930504 ACATTTATAT
95930514 TGTTTAATATTA
1 TGTTTAATATTA
95930526 TGTTTAATATTA
1 TGTTTAATATTA
*
95930538 TTTTTAAT
1 TGTTTAAT
95930546 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (12 bp):
TGTTTAATATTA
Found at i:95930808 original size:17 final size:18
Alignment explanation
Indices: 95930773--95930811 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
95930763 TTATATGTTC
95930773 ATTTTCTTGATTTTATAT
1 ATTTTCTTGATTTTATAT
95930791 ATTTT-TTGAATTTTTATAT
1 ATTTTCTTG-A-TTTTATAT
95930810 AT
1 AT
95930812 ACTTATTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.16
18 6 0.32
19 10 0.53
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (18 bp):
ATTTTCTTGATTTTATAT
Found at i:95930812 original size:21 final size:22
Alignment explanation
Indices: 95930783--95930831 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
95930773 ATTTTCTTGA
*
95930783 TTTTATATAT--TT-TTTGAAT
1 TTTTATATATACTTATTTCAAT
*
95930802 TTTTATATATACTTATTTCTAT
1 TTTTATATATACTTATTTCAAT
95930824 TTTTATAT
1 TTTTATAT
95930832 TTTTTAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.40
21 2 0.08
22 13 0.52
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTATATATACTTATTTCAAT
Found at i:95935221 original size:22 final size:22
Alignment explanation
Indices: 95935196--95935251 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
95935186 TCGAATGCTC
*
95935196 TTTATTTCTTTGTTTCTTTTTT
1 TTTATTTCTTTGTTTCTTTTAT
*
95935218 TTTATGTT-ATTGTTTCTTTTAT
1 TTTAT-TTCTTTGTTTCTTTTAT
*
95935240 TTCATTTACTTT
1 TTTATTT-CTTT
95935252 ATATTATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 2 0.07
22 21 0.78
23 4 0.15
ACGTcount: A:0.11, C:0.09, G:0.05, T:0.75
Consensus pattern (22 bp):
TTTATTTCTTTGTTTCTTTTAT
Found at i:95935470 original size:16 final size:17
Alignment explanation
Indices: 95935451--95935491 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
95935441 ATCTCATAAC
95935451 ATAATTAATATAAATT-
1 ATAATTAATATAAATTA
*
95935467 ATAATTTA-ATAAATTA
1 ATAATTAATATAAATTA
95935483 ATAA-TAATA
1 ATAATTAATA
95935492 ATAATAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAATTAATATAAATTA
Found at i:95935513 original size:10 final size:10
Alignment explanation
Indices: 95935498--95935523 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
95935488 AATAATAATA
95935498 ATAATACACT
1 ATAATACACT
95935508 ATAATACACT
1 ATAATACACT
95935518 ATAATA
1 ATAATA
95935524 AATATCTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAATACACT
Done.