Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 37 of 328
Found at i:10851543 original size:19 final size:18
Alignment explanation
Indices: 10851505--10851543 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
10851495 TGTAAGAGAG
**
10851505 TAAAATAAAATAAGTGAT
1 TAAAATAAAATAAGACAT
10851523 TAAAATAAATATAAGACAT
1 TAAAATAAA-ATAAGACAT
10851542 TA
1 TA
10851544 GCCAGGCGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.28
Consensus pattern (18 bp):
TAAAATAAAATAAGACAT
Found at i:10853962 original size:20 final size:20
Alignment explanation
Indices: 10853939--10853980 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
10853929 CAGTGCATTA
10853939 AACATAAAAGTGGGAGAAGC
1 AACATAAAAGTGGGAGAAGC
10853959 AACATAAAAGTGGGAGAAGC
1 AACATAAAAGTGGGAGAAGC
10853979 AA
1 AA
10853981 TCATGAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.10, G:0.29, T:0.10
Consensus pattern (20 bp):
AACATAAAAGTGGGAGAAGC
Found at i:10855302 original size:14 final size:14
Alignment explanation
Indices: 10855283--10855321 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
10855273 CATAGCTAAT
10855283 TGGAGAAAAGAGAG
1 TGGAGAAAAGAGAG
*
10855297 TGGAGAAAATAGAG
1 TGGAGAAAAGAGAG
**
10855311 ACGAGAAAAGA
1 TGGAGAAAAGA
10855322 AACAAATTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.54, C:0.03, G:0.36, T:0.08
Consensus pattern (14 bp):
TGGAGAAAAGAGAG
Found at i:10857996 original size:22 final size:22
Alignment explanation
Indices: 10857955--10857999 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
10857945 GAATTACTTG
*
10857955 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTATAAATATTT
* *
10857977 TAGGAATATTTTATAGATATTT
1 TAGGAATATTCTATAAATATTT
10857999 T
1 T
10858000 TTTATTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTATAAATATTT
Found at i:10862118 original size:22 final size:22
Alignment explanation
Indices: 10862090--10862134 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10862080 AGGGGGAGTG
10862090 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
10862112 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
10862134 T
1 T
10862135 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:10867228 original size:15 final size:15
Alignment explanation
Indices: 10867208--10867239 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10867198 AATTTATTTT
10867208 TATATAAAAAATTAA
1 TATATAAAAAATTAA
*
10867223 TATATAAAAAGTTAA
1 TATATAAAAAATTAA
10867238 TA
1 TA
10867240 CGGGCTGGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
TATATAAAAAATTAA
Found at i:10872155 original size:24 final size:22
Alignment explanation
Indices: 10872128--10872181 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 22
10872118 AATATGATTT
*
10872128 TTTTATATTTATATGTTTAATTA
1 TTTTAT-TTTATATATTTAATTA
*
10872151 CTTTTAGTTTTATTTATTTAATTA
1 -TTTTA-TTTTATATATTTAATTA
10872175 TTTTATT
1 TTTTATT
10872182 AATTGAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 2 0.07
23 5 0.19
24 19 0.70
25 1 0.04
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTTATTTTATATATTTAATTA
Found at i:10872474 original size:29 final size:30
Alignment explanation
Indices: 10872434--10872492 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
10872424 AAAAAAAGTC
*
10872434 AAGTTCATGTACCAAATTGGG-CCAAAAAA
1 AAGTTCAGGTACCAAATTGGGTCCAAAAAA
10872463 AAGTTCAGGTACCAAATTGGGTCCAAAAAA
1 AAGTTCAGGTACCAAATTGGGTCCAAAAAA
10872493 GTTTAGATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 20 0.71
30 8 0.29
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (30 bp):
AAGTTCAGGTACCAAATTGGGTCCAAAAAA
Found at i:10872505 original size:28 final size:28
Alignment explanation
Indices: 10872434--10872508 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 28
10872424 AAAAAAAGTC
10872434 AAGTTCATG-TACCAAATTGGGCCAAAAAA
1 AAGTTCA-GATACCAAATTGGGCC-AAAAA
*
10872463 AAGTTCAGGTACCAAATTGGGTCC-AAAA
1 AAGTTCAGATACCAAATTGGG-CCAAAAA
* *
10872491 AAGTTTAGATTCCAAATT
1 AAGTTCAGATACCAAATT
10872509 AGAAAAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 20 0.49
29 19 0.46
30 2 0.05
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.25
Consensus pattern (28 bp):
AAGTTCAGATACCAAATTGGGCCAAAAA
Found at i:10881823 original size:3 final size:3
Alignment explanation
Indices: 10881815--10881844 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
10881805 AATATCTTAA
*
10881815 AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10881845 TCTAGTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10898032 original size:13 final size:14
Alignment explanation
Indices: 10898014--10898049 Score: 65
Period size: 13 Copynumber: 2.6 Consensus size: 14
10898004 GGTTATTAAA
10898014 TTATTTAAAAAA-T
1 TTATTTAAAAAATT
10898027 TTATTTAAAAAATT
1 TTATTTAAAAAATT
10898041 TTATTTAAA
1 TTATTTAAA
10898050 TCATTAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTATTTAAAAAATT
Found at i:10900356 original size:60 final size:61
Alignment explanation
Indices: 10900263--10900377 Score: 164
Period size: 60 Copynumber: 1.9 Consensus size: 61
10900253 TATATGGTTT
* *
10900263 TTTCTTTTTTTGGTCACCTATCTATAAACAGTTACAAAATGGTCATC-CAACTATTAGTAAA
1 TTTCTTTTTTTGGTCACCTAACTATAAACAGTTACAAAATGGACA-CACAACTATTAGTAAA
*
10900324 TTTC-TTTTTTGGTCACCTAACTATGAAA-AGTTATAAAATGGACACACAACTATT
1 TTTCTTTTTTTGGTCACCTAACTAT-AAACAGTTACAAAATGGACACACAACTATT
10900378 CAATTTTGTC
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
59 1 0.02
60 41 0.84
61 7 0.14
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.38
Consensus pattern (61 bp):
TTTCTTTTTTTGGTCACCTAACTATAAACAGTTACAAAATGGACACACAACTATTAGTAAA
Found at i:10900512 original size:29 final size:29
Alignment explanation
Indices: 10900472--10900564 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 29
10900462 ACAAAATTGA
*
10900472 ATAGTTGAGTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCATTTTGTAACTTTTC
**** * * * *
10900501 ATAGTTGGGTGACCAAAAAAGAAAATTACTA
1 ATAGTTGGGTGACC-ATTTTGTAACTT-TTC
10900532 ATAGTTGGGTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCATTTTGTAACTTTTC
10900561 ATAG
1 ATAG
10900565 CTAGGTGATC
Statistics
Matches: 45, Mismatches: 17, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
29 18 0.40
30 12 0.27
31 15 0.33
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (29 bp):
ATAGTTGGGTGACCATTTTGTAACTTTTC
Found at i:10900535 original size:60 final size:58
Alignment explanation
Indices: 10900441--10900586 Score: 193
Period size: 60 Copynumber: 2.4 Consensus size: 58
10900431 AAAATTTAAG
*
10900441 ATAGTTGGGTGACCGAAAAAGACAAAATTGAATAGTTGAGTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACC-AAAAA-AGAAAATTGAATAGTTGAGTGACCATTTTGTAACTTTTC
* *
10900501 ATAGTTGGGTGACCAAAAAAGAAAATTACTAATAGTTGGGTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCAAAAAAGAAAATT--GAATAGTTGAGTGACCATTTTGTAACTTTTC
* * *
10900561 ATAGCTAGGTGATCAAAAAAGGAAAA
1 ATAGTTGGGTGACCAAAAAA-GAAAA
10900587 AAATCATAGT
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
58 7 0.09
59 5 0.06
60 60 0.78
61 5 0.06
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.29
Consensus pattern (58 bp):
ATAGTTGGGTGACCAAAAAAGAAAATTGAATAGTTGAGTGACCATTTTGTAACTTTTC
Found at i:10903793 original size:30 final size:29
Alignment explanation
Indices: 10903759--10903827 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
10903749 TATTAATTAT
10903759 TTTTTAAAATTT-AAAATATGTTTTTAATA
1 TTTTTAAAATTTAAAAATATGTTTTTAA-A
** *
10903788 CTTTTTAATTTTTCAAAAATATTTTTTTAAA
1 -TTTTTAAAATTT-AAAAATATGTTTTTAAA
10903819 TTTTTAAAA
1 TTTTTAAAA
10903828 ATCAATTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
30 17 0.53
31 1 0.03
32 14 0.44
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (29 bp):
TTTTTAAAATTTAAAAATATGTTTTTAAA
Found at i:10905645 original size:29 final size:30
Alignment explanation
Indices: 10905602--10905663 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
10905592 TTTTTTTATA
* *
10905602 AAAATAATATTAAAAATAAATTAATTAC-G
1 AAAATAATATGAAAAACAAATTAATTACAG
10905631 AAAATAATATGAAAAACAAATTAATTACAG
1 AAAATAATATGAAAAACAAATTAATTACAG
10905661 AAA
1 AAA
10905664 TGAAATGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.26
Consensus pattern (30 bp):
AAAATAATATGAAAAACAAATTAATTACAG
Found at i:10909824 original size:59 final size:59
Alignment explanation
Indices: 10909730--10909882 Score: 164
Period size: 59 Copynumber: 2.6 Consensus size: 59
10909720 TAAATTCAGT
* * * * * *
10909730 CAAAT-GTCACTAAACTATTAATAGGTTTACGTTTTGGTCAATAAATTTTAAAAAGTTA
1 CAAATGGTCACTAAATTATTAGTAAGTTTACATTTTGGTCAATAAACTTCAAAAAGTTA
* * * *
10909788 CAAATGGTCACTAATTTATTAGTAAGTTTATATTTTGGTCACTTAACTTCAAAAAGTTA
1 CAAATGGTCACTAAATTATTAGTAAGTTTACATTTTGGTCAATAAACTTCAAAAAGTTA
* * * *
10909847 CAAAATGGTCATTAAATTATTTGAAAGTTTTCATTT
1 C-AAATGGTCACTAAATTATTAGTAAGTTTACATTT
10909883 AAGTCACTAA
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
58 5 0.06
59 44 0.57
60 28 0.36
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (59 bp):
CAAATGGTCACTAAATTATTAGTAAGTTTACATTTTGGTCAATAAACTTCAAAAAGTTA
Found at i:10909889 original size:60 final size:59
Alignment explanation
Indices: 10909779--10909890 Score: 145
Period size: 60 Copynumber: 1.9 Consensus size: 59
10909769 AATAAATTTT
* * **
10909779 AAAAAGTTACAAATGGTCACTAATTTATTAGTAAGTTTATATTTTGGTCACTTAACTTC
1 AAAAAGTTACAAATGGTCACTAAATTATTAGAAAGTTTATATTTAAGTCACTTAACTTC
* *
10909838 AAAAAGTTACAAAATGGTCATTAAATTATTTGAAAGTTT-TCATTTAAGTCACT
1 AAAAAGTTAC-AAATGGTCACTAAATTATTAGAAAGTTTAT-ATTTAAGTCACT
10909891 AAGCTACTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
59 11 0.24
60 34 0.76
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (59 bp):
AAAAAGTTACAAATGGTCACTAAATTATTAGAAAGTTTATATTTAAGTCACTTAACTTC
Found at i:10910209 original size:31 final size:31
Alignment explanation
Indices: 10910172--10910235 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
10910162 TTGAATAGCC
*
10910172 CAATGACTTAAATAAAAAATTTCATATAATT
1 CAATGACTTAAATAAAAAATTTCAAATAATT
* * *
10910203 CAATGACTTAAATTAAAACTTTCAAATAGTT
1 CAATGACTTAAATAAAAAATTTCAAATAATT
10910234 CA
1 CA
10910236 GTAACCATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.34
Consensus pattern (31 bp):
CAATGACTTAAATAAAAAATTTCAAATAATT
Found at i:10928878 original size:16 final size:16
Alignment explanation
Indices: 10928854--10928889 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
10928844 GAACAAAATG
10928854 AAAAAT-AAAAATAAA
1 AAAAATAAAAAATAAA
10928869 AAAAAGTAAAAAATAAA
1 AAAAA-TAAAAAATAAA
10928886 AAAA
1 AAAA
10928890 TCCATGCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 1 0.05
17 13 0.68
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (16 bp):
AAAAATAAAAAATAAA
Found at i:10929166 original size:2 final size:2
Alignment explanation
Indices: 10929159--10929187 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10929149 TCCTCTATGA
10929159 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10929188 CACGTTACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10935252 original size:31 final size:31
Alignment explanation
Indices: 10935184--10935252 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
10935174 TTTAAAAATA
*
10935184 AATATAATAATAAATAAGATTTAAATAATTT
1 AATATAATAATAAATAAGATTTAAATAATTC
* * *
10935215 ACTATAATGATAAATAATATTTAAATAATTC
1 AATATAATAATAAATAAGATTTAAATAATTC
10935246 AATATAA
1 AATATAA
10935253 ATATTTAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (31 bp):
AATATAATAATAAATAAGATTTAAATAATTC
Found at i:10935255 original size:22 final size:22
Alignment explanation
Indices: 10935230--10935274 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
10935220 AATGATAAAT
10935230 AATATTTAAATAATTCAATATA
1 AATATTTAAATAATTCAATATA
*
10935252 AATATTTAAATAATTTAATATA
1 AATATTTAAATAATTCAATATA
10935274 A
1 A
10935275 TATAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATATTTAAATAATTCAATATA
Found at i:10935968 original size:25 final size:25
Alignment explanation
Indices: 10935918--10935969 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
10935908 ATTAATATAC
*
10935918 TATATATTATAATATTGTATGTATT
1 TATATATTATAATATTGTATCTATT
* *
10935943 TATATATTA-AATTTTTTATCTAATT
1 TATATATTATAATATTGTATCT-ATT
10935968 TA
1 TA
10935970 ATTCAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (25 bp):
TATATATTATAATATTGTATCTATT
Found at i:10936575 original size:14 final size:14
Alignment explanation
Indices: 10936558--10936590 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10936548 TATTTTTTAA
10936558 AATTAT-AAATATCT
1 AATTATGAAATA-CT
10936572 AATTATGAAATACT
1 AATTATGAAATACT
10936586 AATTA
1 AATTA
10936591 ATTTATGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (14 bp):
AATTATGAAATACT
Found at i:10937613 original size:29 final size:30
Alignment explanation
Indices: 10937577--10937639 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
10937567 TGGACACTAC
*
10937577 TATATATACATA-ATATGGTA-TTAAAAATA
1 TATATATACATATA-ATAGTATTTAAAAATA
*
10937606 TATATATACATATAATAGTATTTAAGAATA
1 TATATATACATATAATAGTATTTAAAAATA
10937636 TATA
1 TATA
10937640 CATAAGATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (30 bp):
TATATATACATATAATAGTATTTAAAAATA
Found at i:10937649 original size:29 final size:27
Alignment explanation
Indices: 10937578--10937650 Score: 69
Period size: 30 Copynumber: 2.6 Consensus size: 27
10937568 GGACACTACT
*
10937578 ATATATACAT-AAT-ATGGTATTAAAA
1 ATATATACATAAATAATAGTATTAAAA
* *
10937603 ATATATATATACATATAATAGTATTTAAGA
1 ATATATACATA-A-ATAATAGTA-TTAAAA
10937633 ATATATACATAAGATAAT
1 ATATATACATAA-ATAAT
10937651 GTGGAAATAC
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 9 0.24
27 1 0.03
28 2 0.05
29 11 0.29
30 15 0.39
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (27 bp):
ATATATACATAAATAATAGTATTAAAA
Found at i:10937885 original size:34 final size:37
Alignment explanation
Indices: 10937829--10937899 Score: 85
Period size: 34 Copynumber: 2.0 Consensus size: 37
10937819 TAATACAACA
*
10937829 TTAAAGAAAATATGATACATATA-A-A-ATATAATAT
1 TTAAAGAAAATATGACACATATATATATATATAATAT
* * *
10937863 TTAAAGTATATATGACATATATATATATATATAATAT
1 TTAAAGAAAATATGACACATATATATATATATAATAT
10937900 AATACCCAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
34 19 0.63
35 1 0.03
36 1 0.03
37 9 0.30
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.38
Consensus pattern (37 bp):
TTAAAGAAAATATGACACATATATATATATATAATAT
Found at i:10938590 original size:11 final size:11
Alignment explanation
Indices: 10938574--10938598 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10938564 TAAAATTTAC
10938574 TTTTTTTTATT
1 TTTTTTTTATT
10938585 TTTTTTTTATT
1 TTTTTTTTATT
10938596 TTT
1 TTT
10938599 CGAATATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:10939772 original size:15 final size:16
Alignment explanation
Indices: 10939739--10939772 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10939729 TTGATCTTTG
* *
10939739 AAAAATATAAATTGAA
1 AAAAACATAAATAGAA
10939755 AAAAACATAAATAGAA
1 AAAAACATAAATAGAA
10939771 AA
1 AA
10939773 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATAGAA
Found at i:10939847 original size:14 final size:14
Alignment explanation
Indices: 10939828--10939863 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
10939818 AGTTTTTTTT
*
10939828 TTGAAAATCGGAAA
1 TTGAAAATCAGAAA
*
10939842 TTGAAAAGCAGAAA
1 TTGAAAATCAGAAA
10939856 TTGAAAAT
1 TTGAAAAT
10939864 ACCTCAGCGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.22
Consensus pattern (14 bp):
TTGAAAATCAGAAA
Found at i:10939975 original size:89 final size:88
Alignment explanation
Indices: 10939703--10940108 Score: 421
Period size: 88 Copynumber: 4.6 Consensus size: 88
10939693 GTGGTCCTGA
** * * * * * * *
10939703 GCTCAACTCATTTCTCGCAATATGAATTGATCTTTGAAAAATATAAATTGAAAAAAACATAAATA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG-GAAAAACAGAAATT
10939768 GAAAATACCTCAGCATGTGAGCCGAG
65 GAAAATACCTCAGCATGT--GCCGAG
* ** * * *
10939794 GCTCAACTCACCTCTAGCAATATGAGTTTTTTTTTTGAAAATCGGAAATT-GAAAAGCAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAG-TTGATTTTTGAAAAACAGAAATTGGAAAAACAGAAATT
10939858 GAAAATACCTCAGC--GTGCCTTGAG
65 GAAAATACCTCAGCATGTGCC--GAG
* * *
10939882 GCTCAACTCACCTCTTGCAATATGAGCTGATTTTTGAAAAACATAAATTGGAGAAAACAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGGA-AAAACAGAAATT
*
10939947 -AAAATTACCTCAGCATGT-CTTGAG
65 GAAAA-TACCTCAGCATGTGC-CGAG
* * *
10939971 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAATAGAAATT--AAAAATAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGGAAAAACAGAAATTG
* * *
10940034 AAAAGAACTCAGTATGTGAGCCGAG
66 AAAATACCTCAGCATGT--GCCGAG
* *
10940059 GCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG
10940109 AAATTACCTC
Statistics
Matches: 263, Mismatches: 38, Indels: 30
0.79 0.11 0.09
Matches are distributed among these distances:
86 24 0.09
87 22 0.08
88 84 0.32
89 68 0.26
90 25 0.10
91 24 0.09
92 16 0.06
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (88 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGGAAAAACAGAAATTG
AAAATACCTCAGCATGTGCCGAG
Found at i:10940021 original size:73 final size:73
Alignment explanation
Indices: 10939935--10940166 Score: 196
Period size: 88 Copynumber: 3.0 Consensus size: 73
10939925 TAAATTGGAG
10939935 AAAACAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAACAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
10940000 ATTTTTGA
66 ATTTTTGA
* * ** * * *
10940008 AAAATAGAAATTAAAAATAGAAATTGAAAAGAACTCAGTATGTGAGCCGAGGCTCAACTCACCTC
1 AAAACAGAAATT-AAAAT--TACCT---CAGCA-T--GTCT-T--G---AGGCTCAACTCACCTC
10940073 TCGC-GATATGAGTTGATTTTTGA
51 TCGCAG-TATGAGTTGATTTTTGA
* * * * * *
10940096 CAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
10940161 ATTTTT
66 ATTTTT
10940167 TTGAAGAGTA
Statistics
Matches: 122, Mismatches: 20, Indels: 34
0.69 0.11 0.19
Matches are distributed among these distances:
73 45 0.37
74 5 0.04
76 3 0.02
78 1 0.01
79 5 0.04
80 1 0.01
81 1 0.01
82 5 0.04
83 1 0.01
85 3 0.02
87 5 0.04
88 47 0.39
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (73 bp):
AAAACAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
ATTTTTGA
Found at i:10940025 original size:13 final size:14
Alignment explanation
Indices: 10940004--10940037 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
10939994 GAGTTGATTT
10940004 TTGAAAAATAGAAA
1 TTGAAAAATAGAAA
10940018 TT-AAAAATAGAAA
1 TTGAAAAATAGAAA
10940031 TTGAAAA
1 TTGAAAA
10940038 GAACTCAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:10940269 original size:89 final size:89
Alignment explanation
Indices: 10940100--10940271 Score: 245
Period size: 89 Copynumber: 1.9 Consensus size: 89
10940090 TTTTGACAAA
* * * *
10940100 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
1 CAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
** * *
10940165 TTTTGAAGAGTAGAAATTGGAAAG
66 TTTAAAAAAGCAGAAATTGGAAAG
* **
10940189 CAGAAATCGAAAATACCTCAATGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGATTTGATTT
1 CAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
10940254 TTTAAAAAAGCAGAAATT
66 TTTAAAAAAGCAGAAATT
10940272 AAAAATACCT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (89 bp):
CAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTAAAAAAGCAGAAATTGGAAAG
Found at i:10940300 original size:164 final size:161
Alignment explanation
Indices: 10939935--10940438 Score: 624
Period size: 164 Copynumber: 3.1 Consensus size: 161
10939925 TAAATTGGAG
* * * *
10939935 AAAACAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
* * *
10940000 ATTTTTGAAAAATAGAAATT-AAAAATAGAAATTGAAAAGAACTCAGTATGTGAGCC-GAGGCTC
66 ATTTTTGAAAAATAGAAATTGGAAAACAGAAATTGAAAATAACTCAG-ATGT--GCCTGAGGCTC
* *
10940063 AACTCACCTCTCGCGATATGAGTTGA-TTTTTGA
128 AACTCACCTCTCGCAATATGAGTTGATTTTTTAA
* *
10940096 CAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
* * * * *
10940161 ATTTTTTTGAAGAGTAGAAATTGGAAAGCAGAAATCGAAAATACCTCA-ATGTGCCCTGAGGCTC
66 A--TTTTTGAAAAATAGAAATTGGAAAACAGAAATTGAAAATAACTCAGATGTG-CCTGAGGCTC
*
10940225 AACTCACCTCTCGCAATATGATTTGATTTTTTAA
128 AACTCACCTCTCGCAATATGAGTTGATTTTTTAA
* *
10940259 AAAAGCAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
1 AAAA-CAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
* * * ** *
10940324 GGTTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAGTTAACTCAGCATGT-CTTGAGGCT
65 GATTTTTGAAAAATAGAAATTG--GAAAACAGAAATTGAAAATAACTCAG-ATGTGCCTGAGGCT
*
10940388 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
127 CAACTCACCTCTCGCAATATGAGTTGA-TTTTTTAA
*
10940424 AGAACAGAAA-TAAAA
1 AAAACAGAAATTAAAA
10940439 CATCAGAATA
Statistics
Matches: 296, Mismatches: 35, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
160 1 0.00
161 62 0.21
162 51 0.17
163 31 0.10
164 137 0.46
165 10 0.03
166 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (161 bp):
AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
ATTTTTGAAAAATAGAAATTGGAAAACAGAAATTGAAAATAACTCAGATGTGCCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTAA
Found at i:10940330 original size:75 final size:75
Alignment explanation
Indices: 10940185--10940336 Score: 232
Period size: 75 Copynumber: 2.0 Consensus size: 75
10940175 TAGAAATTGG
* * **
10940185 AAAGCAGAAATCGAAAATACCTCAATGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGATTTG
1 AAAGCAGAAATCAAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
*
10940250 ATTTTTTAAA
66 ATTTTTGAAA
* *
10940260 AAAGCAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAGCAGAAATCAAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
*
10940325 GTTTTTGAAA
66 ATTTTTGAAA
10940335 AA
1 AA
10940337 CATAAATTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (75 bp):
AAAGCAGAAATCAAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
ATTTTTGAAA
Found at i:10940354 original size:16 final size:16
Alignment explanation
Indices: 10940333--10940364 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10940323 TGGTTTTTGA
*
10940333 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
10940349 AAAACAGAAATTGAAG
1 AAAACAGAAATTGAAG
10940365 TTAACTCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.06, G:0.16, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:10950856 original size:15 final size:16
Alignment explanation
Indices: 10950823--10950856 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10950813 TTGATCTTTG
* *
10950823 AAAAATATAAATTGAA
1 AAAAACATAAATAGAA
10950839 AAAAACATAAATAGAA
1 AAAAACATAAATAGAA
10950855 AA
1 AA
10950857 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATAGAA
Found at i:10950947 original size:14 final size:14
Alignment explanation
Indices: 10950912--10950947 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
10950902 AGTTTTTTTT
*
10950912 TTGAAAAGCAGAAA
1 TTGAAAATCAGAAA
10950926 TTGAAAATCAGAAA
1 TTGAAAATCAGAAA
10950940 TTGAAAAT
1 TTGAAAAT
10950948 ACCTCAGCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.22
Consensus pattern (14 bp):
TTGAAAATCAGAAA
Found at i:10951059 original size:89 final size:87
Alignment explanation
Indices: 10950787--10951195 Score: 432
Period size: 88 Copynumber: 4.6 Consensus size: 87
10950777 GTGGTCCTGA
** * * * * * *
10950787 GCTCAACTCATTTCTCGCAATATGAATTGATCTTTGAAAAATATAAATTGAAAAAAACATAAATA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG--AAAAACAGAAATT
10950852 GAAAATACCTCAGCATGTGAGCCGAG
64 GAAAATACCTCAGCATGT--GCCGAG
* ** * *
10950878 GCTCAACTCACCTCTAGCAATATGAGTTTTTTTTTTGAAAAGCAGAAATTGAAAATCAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAG-TTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATTG
10950943 AAAATACCTCAGC--GTGCCTTGAG
65 AAAATACCTCAGCATGTGCC--GAG
* * *
10950966 GCTCAACTCACCTCTTGCAATATGAGCTGATTTTTGAAAAACATAAATTGGAGAAAACAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-GA-AAAACAGAAATT
*
10951031 -AAAATTACCTCAGCATGT-CTTGAG
64 GAAAA-TACCTCAGCATGTGC-CGAG
* * *
10951055 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAATAGAAATT-AAAAATAGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATTGA
* * *
10951119 AAAGAACTCAGTATGTGAGCCGAG
66 AAATACCTCAGCATGT--GCCGAG
* * *
10951143 GCTCAACTCACCTCTCGCGATATGAGTTGATTTTTGACAAATAGAAATTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAA
10951196 TTACCTCAGC
Statistics
Matches: 270, Mismatches: 34, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
86 24 0.09
87 23 0.09
88 85 0.31
89 71 0.26
90 25 0.09
91 24 0.09
92 18 0.07
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (87 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATTGA
AAATACCTCAGCATGTGCCGAG
Found at i:10951105 original size:73 final size:73
Alignment explanation
Indices: 10951019--10951250 Score: 196
Period size: 88 Copynumber: 3.0 Consensus size: 73
10951009 TAAATTGGAG
*
10951019 AAAACAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAATAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
10951084 ATTTTTGA
66 ATTTTTGA
* ** * * *
10951092 AAAATAGAAATTAAAAATAGAAATTGAAAAGAACTCAGTATGTGAGCCGAGGCTCAACTCACCTC
1 AAAATAGAAATT-AAAAT--TACCT---CAGCA-T--GTCT-T--G---AGGCTCAACTCACCTC
10951157 TCGC-GATATGAGTTGATTTTTGA
51 TCGCAG-TATGAGTTGATTTTTGA
* * * * * *
10951180 CAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAATAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
10951245 ATTTTT
66 ATTTTT
10951251 TTGAAGAGTA
Statistics
Matches: 123, Mismatches: 19, Indels: 34
0.70 0.11 0.19
Matches are distributed among these distances:
73 45 0.37
74 5 0.04
76 3 0.02
78 1 0.01
79 5 0.04
80 1 0.01
81 1 0.01
82 5 0.04
83 1 0.01
85 3 0.02
87 5 0.04
88 48 0.39
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (73 bp):
AAAATAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
ATTTTTGA
Found at i:10951109 original size:13 final size:14
Alignment explanation
Indices: 10951088--10951121 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
10951078 GAGTTGATTT
10951088 TTGAAAAATAGAAA
1 TTGAAAAATAGAAA
10951102 TT-AAAAATAGAAA
1 TTGAAAAATAGAAA
10951115 TTGAAAA
1 TTGAAAA
10951122 GAACTCAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:10951379 original size:163 final size:161
Alignment explanation
Indices: 10951019--10951521 Score: 636
Period size: 163 Copynumber: 3.1 Consensus size: 161
10951009 TAAATTGGAG
* * * *
10951019 AAAACAGAAATTAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
* * * *
10951084 ATTTTTGAAAAATAGAAATT-AAAAATAGAAATTGAAAAGAACTCAGTATGTGAGCC-GAGGCTC
66 ATTTTTGAAAAATAGAAATTGGAAAACAGAAATTGAAAATAACTCAG--TGTG-CCCTGAGGCTC
*
10951147 AACTCACCTCTCGCGATATGAGTTGA-TTTTTGA
128 AACTCACCTCTCGCAATATGAGTTGATTTTTTGA
* * *
10951180 CAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
* * * * *
10951245 ATTTTTTTGAAGAGTAGAAATTGGAAAGCAGAAATCGAAAATACCTCAGTGTGCCCTGAGGCTCA
66 A--TTTTTGAAAAATAGAAATTGGAAAACAGAAATTGAAAATAACTCAGTGTGCCCTGAGGCTCA
*
10951310 ACTCACCTCTCGCAATATGAGTTGATTTTTTAA
129 ACTCACCTCTCGCAATATGAGTTGATTTTTTGA
* *
10951343 AAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
* * * ** ** * *
10951408 GTTTTTGAAAAACATAAATTGAAGAAAACAGAAATTGAAGTTAACTCAGCATGTCTTGAGGCTCA
66 ATTTTTGAAAAATAGAAATTG--GAAAACAGAAATTGAAAATAACTCAGTGTGCCCTGAGGCTCA
10951473 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
129 ACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
*
10951507 AGAACAGAAA-TAAAA
1 AAAACAGAAATTAAAA
10951522 CATCAGAATA
Statistics
Matches: 295, Mismatches: 39, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
161 77 0.26
162 36 0.12
163 146 0.49
164 36 0.12
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (161 bp):
AAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
ATTTTTGAAAAATAGAAATTGGAAAACAGAAATTGAAAATAACTCAGTGTGCCCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTGA
Found at i:10951394 original size:74 final size:73
Alignment explanation
Indices: 10951273--10951427 Score: 238
Period size: 74 Copynumber: 2.1 Consensus size: 73
10951263 AATTGGAAAG
** * * *
10951273 CAGAAATCGAAAATACCTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-GTT
10951338 TTTAAAAAA
65 TTTAAAAAA
10951347 CAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGGTTT
1 CAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGGTTT
*
10951412 TTGAAAAA
66 TTAAAAAA
*
10951420 CATAAATT
1 CAGAAATT
10951428 GAAGAAAACA
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 17 0.23
74 57 0.77
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (73 bp):
CAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGGTTT
TTAAAAAA
Found at i:10951437 original size:16 final size:16
Alignment explanation
Indices: 10951416--10951447 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10951406 TGGTTTTTGA
*
10951416 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
10951432 AAAACAGAAATTGAAG
1 AAAACAGAAATTGAAG
10951448 TTAACTCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.06, G:0.16, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:10963754 original size:29 final size:30
Alignment explanation
Indices: 10963718--10963795 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
10963708 TGGACACTAC
10963718 TATATATACATAATATGGTA-TTAAAAATA
1 TATATATACATAATATGGTATTTAAAAATA
* *
10963747 TATATATACAT-ATAATAGTATTTAAGAATA
1 TATATATACATAAT-ATGGTATTTAAAAATA
* *
10963777 TATACATAAGATAATATGG
1 TATATAT-ACATAATATGG
10963796 AAATACGTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 2 0.05
29 16 0.40
30 14 0.35
31 6 0.15
32 2 0.05
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (30 bp):
TATATATACATAATATGGTATTTAAAAATA
Found at i:10963961 original size:28 final size:29
Alignment explanation
Indices: 10963897--10963961 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
10963887 AAAAAAAATA
*
10963897 TATTAGAAAATATATGTACATAATATAATG
1 TATTA-AAAATATATATACATAATATAATG
*
10963927 TGA--AAAAATATATATATATAATATAAT-
1 T-ATTAAAAATATATATACATAATATAATG
10963954 TATTAAAA
1 TATTAAAA
10963962 TATGATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
26 1 0.03
27 1 0.03
28 25 0.83
29 1 0.03
30 1 0.03
31 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (29 bp):
TATTAAAAATATATATACATAATATAATG
Found at i:10964047 original size:18 final size:18
Alignment explanation
Indices: 10964001--10964049 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
10963991 ATACATATAA
** *
10964001 ATATAATATTTAAAGTAT
1 ATATAATATAAAAAATAT
10964019 ATATGACATATAAAAAATAT
1 ATAT-A-ATATAAAAAATAT
10964039 ATATAATATAA
1 ATATAATATAA
10964050 TACCCAAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 10 0.38
19 2 0.08
20 14 0.54
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (18 bp):
ATATAATATAAAAAATAT
Found at i:10966570 original size:19 final size:20
Alignment explanation
Indices: 10966544--10966593 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
10966534 TTTTATTAGT
*
10966544 TATATTTTA-ATATTTAAAA
1 TATATTTTATATATTCAAAA
*
10966563 TATATTTTATATATTCAAAT
1 TATATTTTATATATTCAAAA
*
10966583 TAAATTTTATA
1 TATATTTTATA
10966594 AATCATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
TATATTTTATATATTCAAAA
Found at i:10970088 original size:24 final size:24
Alignment explanation
Indices: 10970043--10970089 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
10970033 ACTCAAATTT
*
10970043 AAATTTAAAAAATTATTTTTATAC
1 AAATTTAAAAAATTATTATTATAC
*
10970067 AAATTATAAAAATTTA-TATTATA
1 AAATT-TAAAAAATTATTATTATA
10970090 AGCTTGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AAATTTAAAAAATTATTATTATAC
Found at i:10979637 original size:17 final size:18
Alignment explanation
Indices: 10979606--10979640 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
10979596 ATGTGGACTA
10979606 ACCTGTGTAGGCCCACAC
1 ACCTGTGTAGGCCCACAC
10979624 ACCTGTGT-GGCCCACAC
1 ACCTGTGTAGGCCCACAC
10979641 GACCCAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.20, C:0.40, G:0.23, T:0.17
Consensus pattern (18 bp):
ACCTGTGTAGGCCCACAC
Found at i:10980191 original size:58 final size:58
Alignment explanation
Indices: 10980127--10980246 Score: 240
Period size: 58 Copynumber: 2.1 Consensus size: 58
10980117 ACTTGCTGGA
10980127 AGAAAGGAATAATAAAAATAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
1 AGAAAGGAATAATAAAAATAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
10980185 AGAAAGGAATAATAAAAATAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
1 AGAAAGGAATAATAAAAATAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
10980243 AGAA
1 AGAA
10980247 CTTCGGTAGG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.61, C:0.03, G:0.23, T:0.13
Consensus pattern (58 bp):
AGAAAGGAATAATAAAAATAAAAACAAAAGAAACGATAATGATAGTGAAGTAGAGAGG
Found at i:10983410 original size:16 final size:17
Alignment explanation
Indices: 10983379--10983411 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10983369 TTCATAAGTA
10983379 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
10983396 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
10983412 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:10983966 original size:46 final size:46
Alignment explanation
Indices: 10983697--10983970 Score: 354
Period size: 46 Copynumber: 6.0 Consensus size: 46
10983687 TTTGACATGA
* * * * *
10983697 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * *
10983743 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * * *
10983789 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC-TCGTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT-ATCAGGT
* *
10983835 TGCCATGGTATCTTTCAACCATGGTCTTATTCACTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
10983881 TGCCATGGTATCTTTCGACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
10983927 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
10983971 AGAGCACACT
Statistics
Matches: 207, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
45 5 0.02
46 201 0.97
47 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:10990750 original size:6 final size:6
Alignment explanation
Indices: 10990699--10990746 Score: 69
Period size: 6 Copynumber: 8.0 Consensus size: 6
10990689 TCTAAAATTT
* * *
10990699 GTCATC GTCATC GTCATC TTCATC GTCATC GTCGTC GTCATC ATCATC
1 GTCATC GTCATC GTCATC GTCATC GTCATC GTCATC GTCATC GTCATC
10990747 ATCAGTAACT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.17, C:0.33, G:0.15, T:0.35
Consensus pattern (6 bp):
GTCATC
Found at i:10990998 original size:33 final size:31
Alignment explanation
Indices: 10990961--10991036 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 31
10990951 ATGCTGCAGC
** *
10990961 ACCAAATGCTGCTGCTGTACCAAACGTTGCGGT
1 ACCAAATGCTGCT--TGTACCAAACACTGCGAT
* *
10990994 ACCAAATGCT-ATTGTACCAAACACTGTGAT
1 ACCAAATGCTGCTTGTACCAAACACTGCGAT
10991024 ACCAAATGCTGCT
1 ACCAAATGCTGCT
10991037 ATACTGAATG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
30 24 0.67
31 1 0.03
32 1 0.03
33 10 0.28
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (31 bp):
ACCAAATGCTGCTTGTACCAAACACTGCGAT
Found at i:10991040 original size:15 final size:15
Alignment explanation
Indices: 10990993--10991062 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 15
10990983 AACGTTGCGG
*
10990993 TACCAAATGCTATTG-
1 TACCAAATGCT-GTGA
**
10991008 TACCAAACACTGTGA
1 TACCAAATGCTGTGA
10991023 TACCAAATGCTGCT-A
1 TACCAAATGCTG-TGA
** *
10991038 TACTGAATGCTGTGG
1 TACCAAATGCTGTGA
10991053 TACCAAATGC
1 TACCAAATGC
10991063 GAATGAGAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
14 3 0.07
15 38 0.90
16 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (15 bp):
TACCAAATGCTGTGA
Found at i:10997642 original size:39 final size:39
Alignment explanation
Indices: 10997558--10997710 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
10997548 TATGGTAACC
** * *
10997558 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
10997598 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
10997637 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
10997676 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
10997711 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:10997683 original size:78 final size:79
Alignment explanation
Indices: 10997527--10997709 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
10997517 TCGTTCAAAC
* * **
10997527 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
10997592 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
10997607 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
10997671 CAATTTGCACAATT
66 CAATTTGCACAATT
10997685 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
10997710 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:11004905 original size:20 final size:20
Alignment explanation
Indices: 11004882--11004922 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
11004872 CAAAACTTAT
11004882 ATAA-CTATCAACAAACATTC
1 ATAATCTATCAACAAAC-TTC
*
11004902 ATAATCTATCAAGAAACTTC
1 ATAATCTATCAACAAACTTC
11004922 A
1 A
11004923 AAATACATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAATCTATCAACAAACTTC
Found at i:11005042 original size:21 final size:20
Alignment explanation
Indices: 11005001--11005042 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
11004991 CAAAACTTGT
*
11005001 ATAACTATCAATAAATA-TTC
1 ATAACTATCAAGAAA-ACTTC
11005021 ATAATCTATCAAGAAAACTTC
1 ATAA-CTATCAAGAAAACTTC
11005042 A
1 A
11005043 AAATACATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.31
Consensus pattern (20 bp):
ATAACTATCAAGAAAACTTC
Found at i:11007457 original size:15 final size:15
Alignment explanation
Indices: 11007435--11007625 Score: 184
Period size: 15 Copynumber: 12.7 Consensus size: 15
11007425 CTCTACCATT
*
11007435 GTACCAAATGTTGCG
1 GTACCAAATGCTGCG
* *
11007450 GCACCAAATGCTGCA
1 GTACCAAATGCTGCG
* *
11007465 GTACCAAATGCAGCT
1 GTACCAAATGCTGCG
*
11007480 GTACCAAATGCTACG
1 GTACCAAATGCTGCG
* * *
11007495 ATACCAAATACTGCT
1 GTACCAAATGCTGCG
* * **
11007510 GTTCCAAATGTTGTT
1 GTACCAAATGCTGCG
* *
11007525 GTACCAAACGTTGCG
1 GTACCAAATGCTGCG
*
11007540 GTACCAAATGCTGCT
1 GTACCAAATGCTGCG
* *
11007555 GTACCAGATGTTGCG
1 GTACCAAATGCTGCG
* *
11007570 GTACCAAATGTTGCT
1 GTACCAAATGCTGCG
*
11007585 GTACCAAATGTTGCG
1 GTACCAAATGCTGCG
*
11007600 ATACCAAATGCTGCG
1 GTACCAAATGCTGCG
11007615 GTACCAAATGC
1 GTACCAAATGC
11007626 GAACGAGAAA
Statistics
Matches: 142, Mismatches: 34, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 142 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.25
Consensus pattern (15 bp):
GTACCAAATGCTGCG
Found at i:11007471 original size:30 final size:30
Alignment explanation
Indices: 11007434--11007624 Score: 213
Period size: 30 Copynumber: 6.4 Consensus size: 30
11007424 CCTCTACCAT
*
11007434 TGTACCAAATGTTGCGGCACCAAATGCTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
* ** * *
11007464 AGTACCAAATGCAGCTGTACCAAATGCTAC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
** * * * *
11007494 -GATACCAAATACTGCTGTTCCAAATGTTGT
1 TG-TACCAAATGTTGCGGTACCAAATGCTGC
*
11007524 TGTACCAAACGTTGCGGTACCAAATGCTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
* *
11007554 TGTACCAGATGTTGCGGTACCAAATGTTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
*
11007584 TGTACCAAATGTTGCGATACCAAATGCTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGC
*
11007614 GGTACCAAATG
1 TGTACCAAATG
11007625 CGAACGAGAA
Statistics
Matches: 133, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
29 1 0.01
30 131 0.98
31 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (30 bp):
TGTACCAAATGTTGCGGTACCAAATGCTGC
Found at i:11007501 original size:45 final size:45
Alignment explanation
Indices: 11007434--11007624 Score: 213
Period size: 45 Copynumber: 4.2 Consensus size: 45
11007424 CCTCTACCAT
* * *
11007434 TGTACCAAATGTTGCGGCACCAAATGCTGCAGTACCAAATGCAGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGCTGTACCAAATGCTGC
* * * * * * *
11007479 TGTACCAAATGCTACGATACCAAATACTGCTGTTCCAAATGTTGT
1 TGTACCAAATGTTGCGGTACCAAATGCTGCTGTACCAAATGCTGC
* * *
11007524 TGTACCAAACGTTGCGGTACCAAATGCTGCTGTACCAGATGTTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGCTGTACCAAATGCTGC
* * *
11007569 GGTACCAAATGTTGCTGTACCAAATGTTGC-GATACCAAATGCTGC
1 TGTACCAAATGTTGCGGTACCAAATGCTGCTG-TACCAAATGCTGC
*
11007614 GGTACCAAATG
1 TGTACCAAATG
11007625 CGAACGAGAA
Statistics
Matches: 121, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
44 1 0.01
45 120 0.99
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (45 bp):
TGTACCAAATGTTGCGGTACCAAATGCTGCTGTACCAAATGCTGC
Found at i:11012021 original size:41 final size:41
Alignment explanation
Indices: 11011976--11012093 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
11011966 TGAAAGATAA
11011976 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
11012017 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
11012047 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
11012088 ATGTAG
1 ATGTAG
11012094 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:11012032 original size:71 final size:71
Alignment explanation
Indices: 11011944--11012107 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
11011934 GAGATGTATC
11011944 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
11012009 AGGACA
66 AGGACA
11012015 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
11012080 AGGACA
66 AGGACA
11012086 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
11012108 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:11019588 original size:41 final size:41
Alignment explanation
Indices: 11019543--11019660 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
11019533 TGAAAGATAA
11019543 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
11019584 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
11019614 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
11019655 ATGTAG
1 ATGTAG
11019661 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:11019599 original size:71 final size:71
Alignment explanation
Indices: 11019511--11019674 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
11019501 GAGATGTATC
11019511 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
11019576 AGGACA
66 AGGACA
11019582 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
11019647 AGGACA
66 AGGACA
11019653 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
11019675 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:11028796 original size:53 final size:53
Alignment explanation
Indices: 11028715--11028852 Score: 197
Period size: 53 Copynumber: 2.6 Consensus size: 53
11028705 CTTACACGGT
* *
11028715 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
11028770 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
**
11028823 TCACATTGCACCGATGCCATAGCCCAGCTA
1 TCACATTATACCGATGCCATAGCCCAGCTA
11028853 CCGTCTTAAA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
52 1 0.01
53 69 0.90
54 1 0.01
55 6 0.08
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.25
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:11028859 original size:53 final size:53
Alignment explanation
Indices: 11028749--11028880 Score: 187
Period size: 53 Copynumber: 2.5 Consensus size: 53
11028739 CCCAGACATG
* * **
11028749 GTCTTATACGGAATCACATTATCACATTATACCGATGCCATAGCCCAGCTATG
1 GTCTTATACGGAGTCACATTATCACATTACACCGATGCCATAGCCCAGCTACC
*
11028802 GTCTTATACGGAGTCACATTATCACATTGCACCGATGCCATAGCCCAGCTACC
1 GTCTTATACGGAGTCACATTATCACATTACACCGATGCCATAGCCCAGCTACC
*
11028855 GTCTTAAACGG-G-CACACTTATCACAT
1 GTCTTATACGGAGTCACA-TTATCACAT
11028881 ATTTTTCGTC
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
51 4 0.06
52 10 0.14
53 58 0.81
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (53 bp):
GTCTTATACGGAGTCACATTATCACATTACACCGATGCCATAGCCCAGCTACC
Found at i:11035497 original size:53 final size:53
Alignment explanation
Indices: 11035416--11035566 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
11035406 CTTACACGGT
* *
11035416 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
11035471 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
11035524 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
11035567 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:11040058 original size:124 final size:124
Alignment explanation
Indices: 11039832--11040080 Score: 444
Period size: 124 Copynumber: 2.0 Consensus size: 124
11039822 TAAGATATGG
11039832 ATTGGAGTTTCATCGTAAGTCATATCAAACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
1 ATTGGAGTTTCATCGTAAGTCATATCAAACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
* *
11039897 CGGATCAGATCTGTATCGTCAAAGCACCGATATATGAAACAGATCATGAATCTTTTCTA
66 CGGATCAGATCTGTATCGTCAAAGCACCGATACATGAAACACATCATGAATCTTTTCTA
* *
11039956 ATTGGCGTTTCATCGTAAGTCATATCAGACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
1 ATTGGAGTTTCATCGTAAGTCATATCAAACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
* *
11040021 CGGATCAGATCTGTATCGTCAAAGCACTGATACATGAAACACATCATGAATTTTTTCTA
66 CGGATCAGATCTGTATCGTCAAAGCACCGATACATGAAACACATCATGAATCTTTTCTA
11040080 A
1 A
11040081 CTCTGGTGGC
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 119 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (124 bp):
ATTGGAGTTTCATCGTAAGTCATATCAAACTGAATTTCAATCTCAGACGGGGAAATCACATGCGA
CGGATCAGATCTGTATCGTCAAAGCACCGATACATGAAACACATCATGAATCTTTTCTA
Found at i:11043549 original size:13 final size:13
Alignment explanation
Indices: 11043531--11043555 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11043521 CTCGGCATGG
11043531 ACACGCCCGTGTA
1 ACACGCCCGTGTA
11043544 ACACGCCCGTGT
1 ACACGCCCGTGT
11043556 GAGTCGTGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:11046389 original size:42 final size:43
Alignment explanation
Indices: 11046326--11046407 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
11046316 TTACATATAA
* *
11046326 TCAAACATCGATGCCACTGTCCCTGACAGGGTCTTACACGAAG
1 TCAAACATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAG
* *
11046369 TCAAATAT-GATGCCAATGTCCCAGACATGGTCTTACACG
1 TCAAACATCGATGCCAATGTCCCAGACAGGGTCTTACACG
11046408 CAAAACAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 28 0.80
43 7 0.20
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (43 bp):
TCAAACATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAG
Found at i:11050025 original size:22 final size:22
Alignment explanation
Indices: 11050000--11050150 Score: 69
Period size: 22 Copynumber: 7.0 Consensus size: 22
11049990 GAGAGCATAA
11050000 AAGTGCTAATCAGAGAGCACCG
1 AAGTGCTAATCAGAGAGCACCG
* **
11050022 AAGTGCTGAA-CAGATAGCACAA
1 AAGTGCT-AATCAGAGAGCACCG
* ** *
11050044 AAATATTAATCAAAGAGCACCG
1 AAGTGCTAATCAGAGAGCACCG
* *
11050066 -A-TGTTGAAT-AGAGAGCACAG
1 AAGTGCT-AATCAGAGAGCACCG
** * * *
11050086 ATTTACTAATCAAAGAGCACCA
1 AAGTGCTAATCAGAGAGCACCG
* **
11050108 AAGTGCTGAA-CCGAGAGCATAG
1 AAGTGCT-AATCAGAGAGCACCG
* *
11050130 AAGTGCTAATTAAAGAGCACC
1 AAGTGCTAATCAGAGAGCACC
11050151 AATGTGTTGA
Statistics
Matches: 89, Mismatches: 32, Indels: 16
0.65 0.23 0.12
Matches are distributed among these distances:
20 12 0.13
21 11 0.12
22 62 0.70
23 4 0.04
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (22 bp):
AAGTGCTAATCAGAGAGCACCG
Found at i:11050096 original size:42 final size:44
Alignment explanation
Indices: 11049989--11050164 Score: 151
Period size: 44 Copynumber: 4.0 Consensus size: 44
11049979 TAGTGTACAT
* * * *
11049989 AGAGAGCATAAAAGTGCTAATCAGAGAGCACCGAAGTGCTGAAC
1 AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
* * * *
11050033 AGATAGCACAAAAATATTAATCAAAGAGCACCG-A-TGTTGAAT
1 AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
* ** *
11050075 AGAGAGCACAGATTTACTAATCAAAGAGCACCAAAGTGCTGAAC
1 AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
* * * * * * *
11050119 CGAGAGCATAGAAGTGCTAATTAAAGAGCACC-AATGTGTTGAAC
1 AGAGAGCACAAAAATACTAATCAAAGAGCACCGAA-GTGCTGAAC
11050163 AG
1 AG
11050165 TTAATAGAGC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
42 33 0.31
43 4 0.04
44 68 0.65
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.18
Consensus pattern (44 bp):
AGAGAGCACAAAAATACTAATCAAAGAGCACCGAAGTGCTGAAC
Found at i:11059783 original size:31 final size:31
Alignment explanation
Indices: 11059745--11059815 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 31
11059735 CATAATGCTC
* *
11059745 TATAGAAAACATA-TTTTTATAAAATAAAAAT
1 TATAGAAAACACAGTTTTTAGAAAA-AAAAAT
*
11059776 TATAGAAATAGACAGTTTTTAGAAAAAAAAAT
1 TATAGAAA-ACACAGTTTTTAGAAAAAAAAAT
11059808 TATA-AAAA
1 TATAGAAAA
11059816 TAATTTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 1 0.03
31 11 0.31
32 13 0.37
33 10 0.29
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (31 bp):
TATAGAAAACACAGTTTTTAGAAAAAAAAAT
Found at i:11061338 original size:53 final size:53
Alignment explanation
Indices: 11061197--11061347 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
11061187 ACAAGTGTGC
* **
11061197 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
11061250 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
11061303 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
11061348 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:11068374 original size:53 final size:53
Alignment explanation
Indices: 11068233--11068383 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
11068223 ACAAGTGTGC
* **
11068233 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
11068286 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
11068339 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
11068384 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:11071162 original size:35 final size:35
Alignment explanation
Indices: 11071111--11071182 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
11071101 GCTTTTAGGG
*
11071111 TTAGGGTTTTGCTAAAATAAGTTAGGGTTTAGTGT
1 TTAGGGTTTTGCTAAAATAAGTTAGGGTTTAGAGT
* *
11071146 TTAGGTTTTTGTTAAAATAAGTTAGGGTTTAGAGT
1 TTAGGGTTTTGCTAAAATAAGTTAGGGTTTAGAGT
11071181 TT
1 TT
11071183 TAGTAGATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.46
Consensus pattern (35 bp):
TTAGGGTTTTGCTAAAATAAGTTAGGGTTTAGAGT
Found at i:11071298 original size:26 final size:25
Alignment explanation
Indices: 11071264--11071352 Score: 117
Period size: 25 Copynumber: 3.5 Consensus size: 25
11071254 TCTAAATAAA
*
11071264 TTAAGTAAATTAAGGTTTTTAGGGTT
1 TTAAATAAATTAAGG-TTTTAGGGTT
*
11071290 TTAAATAAATT-AGGGTTTAGGGTT
1 TTAAATAAATTAAGGTTTTAGGGTT
* *
11071314 TTAAAATAAATTAAGATTTTATGGTT
1 TT-AAATAAATTAAGGTTTTAGGGTT
11071340 TTAAATAAATTAA
1 TTAAATAAATTAA
11071353 ATTAGGGTTC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
24 11 0.20
25 23 0.41
26 22 0.39
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (25 bp):
TTAAATAAATTAAGGTTTTAGGGTT
Found at i:11071352 original size:25 final size:25
Alignment explanation
Indices: 11071264--11071352 Score: 108
Period size: 26 Copynumber: 3.5 Consensus size: 25
11071254 TCTAAATAAA
* *
11071264 TTAAGTAAATTAAGGTTTTTAGGGTT
1 TTAAATAAATTAA-GATTTTAGGGTT
**
11071290 TTAAATAAATT-AGGGTTTAGGGTT
1 TTAAATAAATTAAGATTTTAGGGTT
*
11071314 TTAAAATAAATTAAGATTTTATGGTT
1 TT-AAATAAATTAAGATTTTAGGGTT
11071340 TTAAATAAATTAA
1 TTAAATAAATTAA
11071353 ATTAGGGTTC
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
24 12 0.22
25 21 0.38
26 22 0.40
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (25 bp):
TTAAATAAATTAAGATTTTAGGGTT
Found at i:11071787 original size:126 final size:125
Alignment explanation
Indices: 11071454--11071828 Score: 540
Period size: 125 Copynumber: 3.0 Consensus size: 125
11071444 TTATCTTGTT
* * *
11071454 AAAATAATTTTGAGAAGACGTTTTTGAATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTG
1 AAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGCACTG
* * *
11071519 TCAGCAAAAATACAGAAAAAAGCTCTCACATGGACACTCTTTTTCTACAGTAGTTCCTG-A
66 TCAGCAAAATTAC-GAAAAAAGCTCTCACGTGGACACTCTTTTTCTACAGTAGTTCATGAA
* * *
11071579 AAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGCACTA
1 AAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGCACTG
* *
11071644 TCAGTAAAATTACGAAAAAAAGCTAC-CATGTGGACACTCTTTTTCTACAGTAGTTCATGAA
66 TCAGCAAAATTACG-AAAAAAGCT-CTCACGTGGACACTCTTTTTCTACAGTAGTTCATGAA
* *
11071705 AAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGT-AAAAATGCTTCAAGCAAGATGCACTG
1 AAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGCACTG
* * * *
11071769 TTAGCAAAATTTCTGAAAAAAGCTCTTACGTGGACGCTCTTTTTCTACAGTAGTTCATGA
66 TCAGCAAAATTAC-GAAAAAAGCTCTCACGTGGACACTCTTTTTCTACAGTAGTTCATGA
11071829 TTGGCTCATT
Statistics
Matches: 223, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
124 2 0.01
125 182 0.82
126 39 0.17
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (125 bp):
AAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTAAAAAACGCTTCAAGCAGGATGCACTG
TCAGCAAAATTACGAAAAAAGCTCTCACGTGGACACTCTTTTTCTACAGTAGTTCATGAA
Found at i:11073773 original size:33 final size:33
Alignment explanation
Indices: 11073720--11073794 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
11073710 GGCCCTACCG
* **
11073720 TGGTCTT-TCATTCACATGCCATAACCCGGTTA
1 TGGTCTTATTATTCACATGCCATAACCCGACTA
* *
11073752 TGGTCTTATTATTCA-ATTGCCATAGCCTGACTA
1 TGGTCTTATTATTCACA-TGCCATAACCCGACTA
11073785 TGGTCTTATT
1 TGGTCTTATT
11073795 TGGCAACTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (33 bp):
TGGTCTTATTATTCACATGCCATAACCCGACTA
Found at i:11076814 original size:26 final size:26
Alignment explanation
Indices: 11076785--11076861 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
11076775 TTTTTTTGTA
11076785 ATTTTTATTTTTAATGGTTTTAATAC
1 ATTTTTATTTTTAATGGTTTTAATAC
* *
11076811 A-TTTTA-GTTT--T--TCTTAA-AC
1 ATTTTTATTTTTAATGGTTTTAATAC
11076830 AATTTTTATTTTTAATGGTTTTAATAC
1 -ATTTTTATTTTTAATGGTTTTAATAC
11076857 ATTTT
1 ATTTT
11076862 AAATTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 6 0.15
21 5 0.13
22 4 0.10
24 4 0.10
25 5 0.13
26 11 0.28
27 2 0.05
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.61
Consensus pattern (26 bp):
ATTTTTATTTTTAATGGTTTTAATAC
Found at i:11078581 original size:58 final size:56
Alignment explanation
Indices: 11078463--11078594 Score: 151
Period size: 58 Copynumber: 2.3 Consensus size: 56
11078453 TTAATTCATA
* * *
11078463 TAATAATAATTATATTAAGAATGTTATTAAATTATATTTTTTTATTAAATTATATT
1 TAATAATAATTATATTAAGAATATGATTAAATTATATTTTTGTATTAAATTATATT
* * * *
11078519 TAATAATAATTATGTTAA-AATATGGTTAAACTATTTATTATTTGTATTAAATTATTTT
1 TAATAATAATTATATTAAGAATATGATTAAA-T-TATATT-TTTGTATTAAATTATATT
11078577 TAATAATAATCT-TATTAA
1 TAATAATAAT-TATATTAA
11078595 AATTTAATAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
55 9 0.14
56 18 0.28
57 5 0.08
58 31 0.48
59 1 0.02
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (56 bp):
TAATAATAATTATATTAAGAATATGATTAAATTATATTTTTGTATTAAATTATATT
Found at i:11078776 original size:41 final size:39
Alignment explanation
Indices: 11078693--11078780 Score: 115
Period size: 39 Copynumber: 2.2 Consensus size: 39
11078683 TTACAACATC
*
11078693 ATTCCATTCAACCAAACATAAGAATATTATTACAGTTCT
1 ATTCCATTCAACCAAACATAAGAATATTATTACAGCTCT
* *
11078732 ATTCCATTCAACCAAACAGT-TGAATTACTTATTATAGCTCT
1 ATTCCATTCAACCAAACA-TAAGAA-TA-TTATTACAGCTCT
11078773 ATTCCATT
1 ATTCCATT
11078781 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
39 21 0.49
40 3 0.07
41 19 0.44
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (39 bp):
ATTCCATTCAACCAAACATAAGAATATTATTACAGCTCT
Found at i:11078786 original size:16 final size:16
Alignment explanation
Indices: 11078762--11078817 Score: 94
Period size: 16 Copynumber: 3.5 Consensus size: 16
11078752 TGAATTACTT
*
11078762 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
11078778 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
11078794 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
11078810 ATTACAGC
1 ATTACAGC
11078818 CAACCAAACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.07, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:11083867 original size:27 final size:27
Alignment explanation
Indices: 11083837--11083925 Score: 87
Period size: 27 Copynumber: 3.3 Consensus size: 27
11083827 TATAAAATAC
11083837 AAATTAATTAAAATTACATAAATGAAA
1 AAATTAATTAAAATTACATAAATGAAA
* *
11083864 AAA-TATATTAAATAATATTCA-AAAT--TA
1 AAATTA-ATT-AA-AAT-TACATAAATGAAA
11083891 AAATTAATTAAAATTACATAAATGAAAA
1 AAATTAATTAAAATTACATAAATG-AAA
11083919 AAATTAA
1 AAATTAA
11083926 ATAATATTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 17
0.70 0.06 0.24
Matches are distributed among these distances:
24 3 0.06
25 7 0.14
26 4 0.08
27 13 0.27
28 12 0.24
29 7 0.14
30 3 0.06
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.31
Consensus pattern (27 bp):
AAATTAATTAAAATTACATAAATGAAA
Found at i:11083896 original size:54 final size:52
Alignment explanation
Indices: 11083837--11083946 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 52
11083827 TATAAAATAC
11083837 AAATTAATTAAAATTACATAAATGAAAAAATATATTAAATAATATTCAAA-ATTA
1 AAATTAATTAAAATTACATAAATG-AAAAA-A-ATTAAATAATATTCAAATATTA
*
11083891 AAATTAATTAAAATTACATAAATGAAAAAAATTAAATAATATTCAAATTTTA
1 AAATTAATTAAAATTACATAAATGAAAAAAATTAAATAATATTCAAATATTA
11083943 AAAT
1 AAAT
11083947 AAACCGTTAC
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
51 17 0.31
52 8 0.15
53 5 0.09
54 24 0.44
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (52 bp):
AAATTAATTAAAATTACATAAATGAAAAAAATTAAATAATATTCAAATATTA
Found at i:11085844 original size:16 final size:16
Alignment explanation
Indices: 11085819--11085862 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
11085809 TGGTTAGTTG
* *
11085819 TAATGAAATAGGGCTA
1 TAATGGAATAGAGCTA
*
11085835 TAATTGAATAGAGCTA
1 TAATGGAATAGAGCTA
11085851 TAATGGAATAGA
1 TAATGGAATAGA
11085863 ACTGTAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.27
Consensus pattern (16 bp):
TAATGGAATAGAGCTA
Found at i:11085870 original size:16 final size:16
Alignment explanation
Indices: 11085832--11085870 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
11085822 TGAAATAGGG
* *
11085832 CTATAATTGAATAGAG
1 CTATAATGGAATAGAA
11085848 CTATAATGGAATAGAA
1 CTATAATGGAATAGAA
*
11085864 CTGTAAT
1 CTATAAT
11085871 AAGTAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.31
Consensus pattern (16 bp):
CTATAATGGAATAGAA
Found at i:11085942 original size:44 final size:46
Alignment explanation
Indices: 11085856--11085944 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
11085846 AGCTATAATG
11085856 GAATAGAACTGTAATAAGTAATTTAACTGTTTGGTTGAATGGAATA
1 GAATAGAACTGTAATAAGTAATTTAACTGTTTGGTTGAATGGAATA
**
11085902 GAATAGAACTGTAAT-AGT-ATTCT-TGTGTTTGGTTGAATGGAAT
1 GAATAGAACTGTAATAAGTAATT-TAACTGTTTGGTTGAATGGAAT
11085945 GATGTTATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
44 21 0.52
45 4 0.10
46 15 0.38
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (46 bp):
GAATAGAACTGTAATAAGTAATTTAACTGTTTGGTTGAATGGAATA
Found at i:11086143 original size:17 final size:16
Alignment explanation
Indices: 11086116--11086147 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
11086106 AATTATTATT
11086116 AAATAAATTTAATAAA
1 AAATAAATTTAATAAA
11086132 AAATATAATTTAATAA
1 AAATA-AATTTAATAA
11086148 CATTCTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATAAATTTAATAAA
Found at i:11092142 original size:26 final size:26
Alignment explanation
Indices: 11092106--11092215 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
11092096 CATGAAATTC
11092106 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
11092132 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
11092158 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
11092184 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
11092210 TTATCA
1 TTATCA
11092216 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:11095333 original size:15 final size:16
Alignment explanation
Indices: 11095308--11095337 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
11095298 TTCAAGATAA
11095308 GATGATGAAGGAAGAT
1 GATGATGAAGGAAGAT
11095324 GATG-TGAAGGAAGA
1 GATGATGAAGGAAGA
11095338 AGAAGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (16 bp):
GATGATGAAGGAAGAT
Found at i:11096371 original size:15 final size:16
Alignment explanation
Indices: 11096351--11096384 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
11096341 GTTTTTTTAA
11096351 TTTTTAA-GTTTAAGG
1 TTTTTAAGGTTTAAGG
11096366 TTTTTAAGGGTTTAAGG
1 TTTTTAA-GGTTTAAGG
11096383 TT
1 TT
11096385 AGGATTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
17 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (16 bp):
TTTTTAAGGTTTAAGG
Found at i:11104914 original size:41 final size:41
Alignment explanation
Indices: 11104863--11104946 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
11104853 GTGCAAAAGA
*
11104863 TTGGACATTTACTATATTTTATGTTATTGTTTCGTAGTGGT
1 TTGGACATTTACTATATTTTATGTTATTGTTTCATAGTGGT
* * *
11104904 TTGGATATTTACTATATTTTATTTTATTGTTTCATGGTGGT
1 TTGGACATTTACTATATTTTATGTTATTGTTTCATAGTGGT
11104945 TT
1 TT
11104947 TCCTTTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.19, C:0.06, G:0.18, T:0.57
Consensus pattern (41 bp):
TTGGACATTTACTATATTTTATGTTATTGTTTCATAGTGGT
Found at i:11106918 original size:42 final size:42
Alignment explanation
Indices: 11106862--11106944 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
11106852 ATGGGCTACG
**
11106862 GATCAAAATTCGTGACAAATACACAAAGAGAGTCCCATGGAA
1 GATCAAAACCCGTGACAAATACACAAAGAGAGTCCCATGGAA
* * *
11106904 GATCAAAACCCGTGACGAATACGCAAAGAGCGTCCCATGGA
1 GATCAAAACCCGTGACAAATACACAAAGAGAGTCCCATGGA
11106945 GGTCGATTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.41, C:0.23, G:0.22, T:0.14
Consensus pattern (42 bp):
GATCAAAACCCGTGACAAATACACAAAGAGAGTCCCATGGAA
Found at i:11118043 original size:14 final size:14
Alignment explanation
Indices: 11118011--11118050 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
11118001 AAAGGTTTAC
11118011 TTTTTTTCTTTT-T
1 TTTTTTTCTTTTCT
**
11118024 CATTTTTCTTTTCT
1 TTTTTTTCTTTTCT
11118038 TTTTTTTCTTTTC
1 TTTTTTTCTTTTC
11118051 CGAATTTGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTCTTTTCT
Found at i:11120093 original size:131 final size:131
Alignment explanation
Indices: 11119864--11120107 Score: 353
Period size: 131 Copynumber: 1.9 Consensus size: 131
11119854 AAATTCCTTG
* * *
11119864 AAACGAAGGCAATGTTTGATGTTTGGCAATTCGAGGAATCGTGCCCTATCGTGTTGGGTTGCAAT
1 AAACGAAGGAAATGTTTGATGCTTGGCAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAAT
* * * *
11119929 TTCCTGTTTGTTCGAAACAATCGAATATTCCTTTGGTATTTCACTCATGCCTTTAAAAATTCTCT
66 TTCCTGTTTGTTCAAAACAATCAAATATCCCTTTGGAATTTCACTCATGCCTTTAAAAATTCTCT
11119994 A
131 A
* *
11119995 AAACGAAGGAAATGTTTGATGCTTGGCAATTCGGGGAGTCGTGCCCTATCGTGCTGGGTTGCAAT
1 AAACGAAGGAAATGTTTGATGCTTGGCAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAAT
** ** * *
11120060 TTTTTGTTTGTTCAAAATGATCAAATGTCCCTTTTGAATTTCACTCAT
66 TTCCTGTTTGTTCAAAACAATCAAATATCCCTTTGGAATTTCACTCAT
11120108 ATTTTCTAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
131 98 1.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (131 bp):
AAACGAAGGAAATGTTTGATGCTTGGCAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAAT
TTCCTGTTTGTTCAAAACAATCAAATATCCCTTTGGAATTTCACTCATGCCTTTAAAAATTCTCT
A
Found at i:11132353 original size:46 final size:46
Alignment explanation
Indices: 11132286--11132457 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
11132276 AACCCGCCCC
*
11132286 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
11132332 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCATCCA
* * ***
11132380 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
11132425 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
11132458 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 1 0.01
46 60 0.57
47 28 0.26
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
Found at i:11132398 original size:93 final size:93
Alignment explanation
Indices: 11132291--11132461 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
11132281 GCCCCTAAGT
***
11132291 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
11132356 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
11132384 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
11132449 CGAGTTCGGATGC
66 CGAGTTCGGATGC
11132462 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:11136369 original size:46 final size:44
Alignment explanation
Indices: 11136269--11136376 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
11136259 TGTCTTTGAC
** * * *
11136269 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
* *
11136313 ATGGACTTACATGGCTCAATCCTGTCTTCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
11136359 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
11136377 TTTCGTTCTG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:11142990 original size:14 final size:14
Alignment explanation
Indices: 11142973--11142999 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11142963 GGGTCTTCAA
11142973 GAAGTTCATACTGG
1 GAAGTTCATACTGG
11142987 GAAGTTCATACTG
1 GAAGTTCATACTG
11143000 CGATAGTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (14 bp):
GAAGTTCATACTGG
Found at i:11143819 original size:45 final size:46
Alignment explanation
Indices: 11143755--11143962 Score: 180
Period size: 45 Copynumber: 4.6 Consensus size: 46
11143745 AAGTCACAAG
*
11143755 TCTTATCTCCTTGAAGTTGCAGTGGAGCAG-TCTAAAGAAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCTAAAGAAAGCAAA
* * * *
11143800 TCTTATTTCCCTGAAGTTGCAGTGGAACAGAT-TGAAGTTATAAACCGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCT-AA---AGAAA--GCAAA
* * ** *
11143851 TCTCATCTCTCTGAAGTTGCAGTAAAGCAGATC---A-AAA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCTAAAGAAAGCAAA
* *
11143892 TCTTATCTCCTTGAAGTTGTAGTGGAGCAGA-CTAAAGAAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCTAAAGAAAGCAAA
* *
11143937 TATTATTTCCCTGAAGTTGCAGTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGA
11143963 ATAGATTGAA
Statistics
Matches: 126, Mismatches: 24, Indels: 26
0.72 0.14 0.15
Matches are distributed among these distances:
40 1 0.01
41 27 0.21
43 1 0.01
44 6 0.05
45 54 0.43
46 3 0.02
49 4 0.03
51 30 0.24
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (46 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCTAAAGAAAGCAAA
Found at i:11143906 original size:137 final size:137
Alignment explanation
Indices: 11143750--11144054 Score: 495
Period size: 137 Copynumber: 2.2 Consensus size: 137
11143740 GATTGAAGTC
* *
11143750 ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGTCTAAAGAAAGCAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATATTATTTCCCTGAA
* * *
11143815 GTTGCAGTGGAACAGATTGAAGTTATAAACCGCAGATCTCATCTCTCTGAAGTTGCAGTAAAGCA
66 GTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTCGCAGTAAAGCA
11143880 GATCAAA
131 GATCAAA
*
11143887 ACAAGTCTTATCTCCTTGAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAATATTATTTCCCTGAA
1 ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATATTATTTCCCTGAA
* * *
11143952 GTTGCAGTGGAATAGATTGAAGCTATAAATCACAGATCTCATCTCTCTGAAGTCGCAGTAGAGCA
66 GTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTCGCAGTAAAGCA
11144017 GATCAAA
131 GATCAAA
* *
11144024 ACAA-ACTCTATTTCCTTGAAGTTGCAGTGGA
1 ACAAGTCT-TATCTCCTTGAAGTTGCAGTGGA
11144055 ACGATAGAGC
Statistics
Matches: 155, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
136 2 0.01
137 153 0.99
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (137 bp):
ACAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAATATTATTTCCCTGAA
GTTGCAGTGGAACAGATTGAAGCTATAAACCACAGATCTCATCTCTCTGAAGTCGCAGTAAAGCA
GATCAAA
Found at i:11144128 original size:16 final size:18
Alignment explanation
Indices: 11144097--11144129 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
11144087 TGGGTTGAAC
11144097 GAGGCTACCTAAAGAAGA
1 GAGGCTACCTAAAGAAGA
11144115 GAGGC-ACC-AAAGAAG
1 GAGGCTACCTAAAGAAG
11144130 TCAAGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.45, C:0.18, G:0.30, T:0.06
Consensus pattern (18 bp):
GAGGCTACCTAAAGAAGA
Found at i:11144751 original size:8 final size:7
Alignment explanation
Indices: 11144725--11144749 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11144715 TATATTAGAT
11144725 AAAATAA
1 AAAATAA
11144732 AAAATAA
1 AAAATAA
11144739 AAAATAA
1 AAAATAA
11144746 AAAA
1 AAAA
11144750 ATTCTTAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:11148123 original size:45 final size:45
Alignment explanation
Indices: 11148051--11148146 Score: 140
Period size: 45 Copynumber: 2.1 Consensus size: 45
11148041 AATTGTTTAT
* *
11148051 TGAAATATGATATCGGGCTTCGGGCCTAGCAGGCTATGATGCCGG
1 TGAAATATGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGG
* *
11148096 TGAAATATTAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATATGATATCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGG
11148141 TGAAAT
1 TGAAAT
11148147 GAAATGTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 5 0.11
45 41 0.89
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (45 bp):
TGAAATATGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGG
Found at i:11153260 original size:3 final size:3
Alignment explanation
Indices: 11153252--11153357 Score: 83
Period size: 3 Copynumber: 34.7 Consensus size: 3
11153242 AAATGGTGAA
** * *
11153252 AAT AAT AAT AAT AAT AAT ACA- AAT ACC AAC AACG AA- AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT AAT AAT
* * *
11153297 AGT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AACG ACAT GAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T A-AT -AAT
11153345 AAT AAT -AT AAT AA
1 AAT AAT AAT AAT AA
11153358 AAAGTTTAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
2 5 0.06
3 72 0.85
4 6 0.07
5 2 0.02
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:11155186 original size:44 final size:44
Alignment explanation
Indices: 11155138--11155389 Score: 143
Period size: 44 Copynumber: 5.7 Consensus size: 44
11155128 AAGATTGTGA
*
11155138 CTTTGACCTGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAG
1 CTTTGATCTGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAG
* * ** * * * * * *
11155182 CTTTGATTTACTCCGCTGGAACTTCAAAGAGATA-AGGTTGGTGG
1 CTTTGATCTGCTCCAATGTAATTTCAAGGAGA-AGAGATTTGTAG
* * *
11155226 CTTTAATCTGCTCCAATGTAATTTTAGGGAGAAGAGATTTGTAG
1 CTTTGATCTGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAG
** * * ** * * * * *
11155270 CTTCAATTTACTCCGCTGGAACTTCAAGGAGATA-AGGTTGGTGG
1 CTTTGATCTGCTCCAATGTAATTTCAAGGAGA-AGAGATTTGTAG
* * * *
11155314 TTTTAATCTGCTCCAATGTAATTTTAGGGAGAA-ATGATTTGTAG
1 CTTTGATCTGCTCCAATGTAATTTCAAGGAGAAGA-GATTTGTAG
* * * *
11155358 CTTCGATCTTCTCCACTGAAACTTT-AAGGAGA
1 CTTTGATCTGCTCCAATGTAA-TTTCAAGGAGA
11155390 TAAGGTTGAT
Statistics
Matches: 147, Mismatches: 56, Indels: 10
0.69 0.26 0.05
Matches are distributed among these distances:
43 3 0.02
44 139 0.95
45 5 0.03
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (44 bp):
CTTTGATCTGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAG
Found at i:11155238 original size:88 final size:88
Alignment explanation
Indices: 11154967--11155413 Score: 395
Period size: 88 Copynumber: 5.0 Consensus size: 88
11154957 TGCTTCGATA
* *
11154967 TGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTTGATCTACTCTGCTGGAACTTCAAAG
1 TGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTTGATTTACTCCGCTGGAACTTCAAAG
* * * *** *
11155032 AGGTAAGAATT-ATTAATTTCAACC
66 AGATAAG-GTTGGTGGCTTT-AATC
* * * ** * * * ** *
11155056 TGCTCCACTGCAACTTC-AGAGAGATACG-G-TTTGTATATTTTTATCATGCTCTACTGCAACTT
1 TGCTCCAATGTAATTTCAAG-GAGA-A-GAGATTTGTA-GCTTTGAT-TTACTCCGCTGGAACTT
* * * * *
11155118 CAGAGAGATAAAGATT-GTGACTTTGACC
61 CAAAGAGAT-AAGGTTGGTGGCTTTAATC
11155146 TGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTTGATTTACTCCGCTGGAACTTCAAAG
1 TGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTTGATTTACTCCGCTGGAACTTCAAAG
11155211 AGATAAGGTTGGTGGCTTTAATC
66 AGATAAGGTTGGTGGCTTTAATC
* * ** *
11155234 TGCTCCAATGTAATTTTAGGGAGAAGAGATTTGTAGCTTCAATTTACTCCGCTGGAACTTCAAGG
1 TGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTTGATTTACTCCGCTGGAACTTCAAAG
*
11155299 AGATAAGGTTGGTGGTTTTAATC
66 AGATAAGGTTGGTGGCTTTAATC
* * * * * *
11155322 TGCTCCAATGTAATTTTAGGGAGAA-ATGATTTGTAGCTTCGATCTT-CTCCACTGAAACTTTAA
1 TGCTCCAATGTAATTTCAAGGAGAAGA-GATTTGTAGCTTTGAT-TTACTCCGCTGGAACTTCAA
* * *
11155385 GGAGATAAGGTTGATGGCTTAAATC
64 AGAGATAAGGTTGGTGGCTTTAATC
11155410 TGCT
1 TGCT
11155414 TCCCTACTAC
Statistics
Matches: 301, Mismatches: 45, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
87 6 0.02
88 194 0.64
89 33 0.11
90 34 0.11
91 31 0.10
92 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.34
Consensus pattern (88 bp):
TGCTCCAATGTAATTTCAAGGAGAAGAGATTTGTAGCTTTGATTTACTCCGCTGGAACTTCAAAG
AGATAAGGTTGGTGGCTTTAATC
Found at i:11155540 original size:132 final size:132
Alignment explanation
Indices: 11155399--11156022 Score: 819
Period size: 131 Copynumber: 4.7 Consensus size: 132
11155389 ATAAGGTTGA
*
11155399 TGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGTTCCACT
1 TGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACT
*
11155464 ACTGCTTAGGGAAATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGACAAGGCT
66 ACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGACAAGGCT
11155529 AG
131 AG
11155531 TGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGC-GTCTTCGATCTGCTCCACT
1 TGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACT
* * * * *
11155595 ACTGCTTAGGGAGATAAGATTTACAATTTTCAACCTGCTCTACTGCTGCTCAGGGAGACAAGGCT
66 ACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGACAAGGCT
*
11155660 GG
131 AG
* * ** ** **
11155662 TGGCTTAAATCTGCTTTCCTACTACCTCGGGAAGATAAAATTCATTGTCTTTAATCTGCTCTTCT
1 TGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACT
* ** * * *
11155727 ACTACTTATTGAGATAAGATC-AGCAATCTTTAGCCTGCTCCAC-GTCTGCTCAAAGAGATAAGG
66 ACTGCTTAGGGAGATAAGATCTA-CAATCTTCAGCCTGCTCCACTG-CTGCTCAAGGAGACAAGG
11155790 CTAG
129 CTAG
* * * *
11155794 TGGCTTATATCTACTTCCCTACTACCTC-GGAAGATAAGATTCG-TCGTCTTCGATCTACTACAC
1 TGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCT-GTCTTCGATCTGCTCCAC
* * * * * * *
11155857 TACTGCTTAGGGAAATAAGATTTACAATTTTTAGTCTGCTCTACTGCTGCTC-AGAGAGATAAGG
65 TACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAAG-GAGACAAGG
*
11155921 ATAG
129 CTAG
* * * * *
11155925 TGGCTTAAATCTGCTTCCATACTACCTCGGGAAGATAAGATTCGTTATCTTCAATCTACTCCACT
1 TGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACT
11155990 ACTGCTTAGGGAGATAAGATCTACAATCTTCAG
66 ACTGCTTAGGGAGATAAGATCTACAATCTTCAG
11156023 TTTGCTAGTG
Statistics
Matches: 424, Mismatches: 59, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
130 2 0.00
131 223 0.53
132 198 0.47
133 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
TGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACT
ACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGACAAGGCT
AG
Found at i:11155813 original size:263 final size:263
Alignment explanation
Indices: 11155385--11156022 Score: 924
Period size: 263 Copynumber: 2.4 Consensus size: 263
11155375 GAAACTTTAA
* * * *
11155385 GGAGATAAGGTTGATGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTT
1 GGAGATAAGGATGGTGGCTTAAATCTGCTTTCCTACTACCTCGGGAAGATAAGATTCGTTGTCTT
* * *
11155450 CGATCTGTTCCACTACTGCTTAGGGAAATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTC
66 CAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTC
* *
11155515 AAGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCG-CGTC
131 AAAGAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTC-GGAAGATAAGATTCGTCGTC
* * *
11155579 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACAATTTTCAACCTGCTCTACTGCTGC
195 TTCGATCTACTACACTACTGCTTAGGGAAATAAGATTTACAATTTTCAACCTGCTCTACTGCTGC
11155644 TCAG
260 TCAG
* * * *
11155648 GGAGACAAGGCTGGTGGCTTAAATCTGCTTTCCTACTACCTCGGGAAGATAAAATTCATTGTCTT
1 GGAGATAAGGATGGTGGCTTAAATCTGCTTTCCTACTACCTCGGGAAGATAAGATTCGTTGTCTT
* ** * ** *
11155713 TAATCTGCTCTTCTACTACTTATTGAGATAAGATC-AGCAATCTTTAGCCTGCTCCAC-GTCTGC
66 CAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTA-CAATCTTCAGCCTGCTCCACTG-CTGC
* *
11155776 TCAAAGAGATAAGGCTAGTGGCTTATATCTACTTCCCTACTACCTCGGAAGATAAGATTCGTCGT
129 TCAAAGAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAAGATAAGATTCGTCGT
* **
11155841 CTTCGATCTACTACACTACTGCTTAGGGAAATAAGATTTACAATTTTTAGTCTGCTCTACTGCTG
194 CTTCGATCTACTACACTACTGCTTAGGGAAATAAGATTTACAATTTTCAACCTGCTCTACTGCTG
11155906 CTCAG
259 CTCAG
* * *
11155911 AGAGATAAGGATAGTGGCTTAAATCTGC-TTCCATACTACCTCGGGAAGATAAGATTCGTTATCT
1 GGAGATAAGGATGGTGGCTTAAATCTGCTTTCC-TACTACCTCGGGAAGATAAGATTCGTTGTCT
*
11155975 TCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAG
65 TCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAG
11156023 TTTGCTAGTG
Statistics
Matches: 328, Mismatches: 42, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
262 21 0.06
263 306 0.93
264 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (263 bp):
GGAGATAAGGATGGTGGCTTAAATCTGCTTTCCTACTACCTCGGGAAGATAAGATTCGTTGTCTT
CAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCTGCTC
AAAGAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAAGATAAGATTCGTCGTCT
TCGATCTACTACACTACTGCTTAGGGAAATAAGATTTACAATTTTCAACCTGCTCTACTGCTGCT
CAG
Found at i:11156107 original size:106 final size:106
Alignment explanation
Indices: 11155922--11156117 Score: 320
Period size: 106 Copynumber: 1.8 Consensus size: 106
11155912 GAGATAAGGA
** *
11155922 TAGTGGCTTAAATCTGCTTCCATACTACCTCGGGAAGATAAGATTCGTTATCTTCAATCTACTCC
1 TAGTGGCTTAAATCTGCTTCCATACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTACCCC
11155987 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTTTGC
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTTTGC
* * * * *
11156028 TAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAATATTCGCCGTCTTCGATCTGCCCC
1 TAGTGGCTTAAATCTGCTTCCATACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTACCCC
11156093 ACTACTGCTTAGGGAGATAAGATCT
66 ACTACTGCTTAGGGAGATAAGATCT
11156118 CTGAATTCAC
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
106 82 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (106 bp):
TAGTGGCTTAAATCTGCTTCCATACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTACCCC
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTTTGC
Found at i:11156442 original size:26 final size:26
Alignment explanation
Indices: 11156409--11156518 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
11156399 TGATACAAAT
11156409 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
11156435 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
11156461 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
11156487 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11156513 TGATAA
1 TGATAA
11156519 GAATTACATG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:11162310 original size:35 final size:35
Alignment explanation
Indices: 11162216--11162617 Score: 457
Period size: 35 Copynumber: 11.5 Consensus size: 35
11162206 GGTAAAGTGC
* * *
11162216 GAAATGTAGGTATGGTAT-AACCATACCGAATTGT
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
* ** * * * *
11162250 GAAATGTAGGTATGGCGTCGTCCATACTGAGCTAT
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
* * * *
11162285 GATACGTAGGTATGGTATTAACCATATCGAGTTGT
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
* * *
11162320 GAAACGTAGGTATGGTATTAACCATACCGAGATGT
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
11162355 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
*
11162390 GAAATGTAGGTATGGTATCATCCATACCGAGTTGT
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
* *
11162425 GAAATGTAGGTATGGTATCATCCATACCGAGTTGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
* * *
11162460 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
* *
11162495 GAAACGTAGGCATGGTATCATCCATACCGAGTTGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
* * ** **
11162530 GAAATGTAGGTATGGTATTATCCATACTAAGTTAA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
* * *
11162565 GAAATGTAGGTATGGCAT-TTCCCATACCGAGTTGT
1 GAAACGTAGGTATGGTATCAT-CCATACCGAGTTGT
* *
11162600 GAAATGTAGGTATAGTAT
1 GAAACGTAGGTATGGTAT
11162618 TTCAATGAGG
Statistics
Matches: 317, Mismatches: 49, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
34 17 0.05
35 300 0.95
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.30
Consensus pattern (35 bp):
GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
Found at i:11162329 original size:70 final size:70
Alignment explanation
Indices: 11162216--11162618 Score: 513
Period size: 70 Copynumber: 5.8 Consensus size: 70
11162206 GGTAAAGTGC
* * * ** **
11162216 GAAATGTAGGTATGGTAT-AACCATACCGAATTGTGAAATGTAGGTATGGCGTCGTCCATACTGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATACTGA
* *
11162280 GCTAT
66 GTTGT
* * * * * * *
11162285 GATACGTAGGTATGGTATTAACCATATCGAGTTGTGAAACGTAGGTATGGTATTAACCATACCGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATACTGA
*
11162350 GATGT
66 GTTGT
* *
11162355 GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATACCGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATACTGA
11162420 GTTGT
66 GTTGT
* *
11162425 GAAATGTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTGA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATACTGA
11162490 GTTGT
66 GTTGT
* * *
11162495 GAAACGTAGGCATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATTATCCATACTAA
1 GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATACTGA
**
11162560 GTTAA
66 GTTGT
* * * *
11162565 GAAATGTAGGTATGGCAT-TTCCCATACCGAGTTGTGAAATGTAGGTATAGTATT
1 GAAACGTAGGTATGGTATCAT-CCATACCGAGTTGTGAAATGTAGGTATGGTATT
11162619 TCAATGAGGA
Statistics
Matches: 296, Mismatches: 36, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
69 17 0.06
70 279 0.94
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (70 bp):
GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATACTGA
GTTGT
Done.