Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 39 of 328
Found at i:11453266 original size:7 final size:7
Alignment explanation
Indices: 11453250--11453282 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
11453240 AAATTATATC
*
11453250 ATAAAAA
1 ATAAATA
11453257 ATAAATA
1 ATAAATA
11453264 ATAAATA
1 ATAAATA
11453271 ATAAATA
1 ATAAATA
11453278 ATAAA
1 ATAAA
11453283 AAAATTTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
ATAAATA
Found at i:11453273 original size:14 final size:14
Alignment explanation
Indices: 11453250--11453285 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
11453240 AAATTATATC
11453250 ATAAAAAATAAATA
1 ATAAAAAATAAATA
*
11453264 ATAAATAATAAATA
1 ATAAAAAATAAATA
11453278 ATAAAAAA
1 ATAAAAAA
11453286 ATTTCAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
ATAAAAAATAAATA
Found at i:11454266 original size:18 final size:18
Alignment explanation
Indices: 11454245--11454279 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11454235 TATATTTCCC
*
11454245 TTATTTATTTTTTATTAG
1 TTATATATTTTTTATTAG
*
11454263 TTATATGTTTTTTATTA
1 TTATATATTTTTTATTA
11454280 TTTCATGTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (18 bp):
TTATATATTTTTTATTAG
Found at i:11457350 original size:118 final size:118
Alignment explanation
Indices: 11457190--11457420 Score: 381
Period size: 118 Copynumber: 2.0 Consensus size: 118
11457180 TATTTCCGGT
*
11457190 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCTAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
11457255 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
11457308 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
11457373 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
11457421 ATGGAAAACA
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
118 104 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:11458291 original size:11 final size:11
Alignment explanation
Indices: 11458275--11458336 Score: 76
Period size: 11 Copynumber: 5.8 Consensus size: 11
11458265 AAAATTATCT
11458275 AAAATAAAATA
1 AAAATAAAATA
11458286 AAAATAAAATA
1 AAAATAAAATA
*
11458297 AAAAAATAAATA
1 AAAATA-AAATA
*
11458309 AAAA-AGAA-A
1 AAAATAAAATA
11458318 AAAAT-AAATA
1 AAAATAAAATA
11458328 AAAATAAAA
1 AAAATAAAA
11458337 AGAAAGACTG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
9 7 0.16
10 8 0.18
11 20 0.45
12 9 0.20
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.15
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:11458304 original size:19 final size:18
Alignment explanation
Indices: 11458280--11458337 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 18
11458270 TATCTAAAAT
11458280 AAAATAAAAATAAAATAAA
1 AAAATAAAAA-AAAATAAA
*
11458299 AAAATAAATAAAAAAGAAA
1 AAAATAAA-AAAAAATAAA
*
11458318 AAAATAAATAAAAATAAA
1 AAAATAAAAAAAAATAAA
11458336 AA
1 AA
11458338 GAAAGACTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.29
19 23 0.66
20 2 0.06
ACGTcount: A:0.84, C:0.00, G:0.02, T:0.14
Consensus pattern (18 bp):
AAAATAAAAAAAAATAAA
Found at i:11458331 original size:12 final size:12
Alignment explanation
Indices: 11458275--11458313 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
11458265 AAAATTATCT
*
11458275 AAAATAAA-ATA
1 AAAATAAATAAA
11458286 AAAATAAAATAAA
1 AAAAT-AAATAAA
11458299 AAAATAAATAAA
1 AAAATAAATAAA
11458311 AAA
1 AAA
11458314 GAAAAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 5 0.20
12 13 0.52
13 7 0.28
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAATAAATAAA
Found at i:11458336 original size:24 final size:25
Alignment explanation
Indices: 11458275--11458341 Score: 86
Period size: 24 Copynumber: 2.8 Consensus size: 25
11458265 AAAATTATCT
*
11458275 AAAAT-AAAATAAAAATAAAATAAA
1 AAAATAAAAATAAAAAGAAAATAAA
*
11458299 AAAATAAATA-AAAAAGAAAA-AAA
1 AAAATAAAAATAAAAAGAAAATAAA
*
11458322 TAAATAAAAATAAAAAGAAA
1 AAAATAAAAATAAAAAGAAA
11458342 GACTGGGTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.30
24 23 0.62
25 3 0.08
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (25 bp):
AAAATAAAAATAAAAAGAAAATAAA
Found at i:11471564 original size:43 final size:43
Alignment explanation
Indices: 11471498--11471790 Score: 225
Period size: 43 Copynumber: 6.8 Consensus size: 43
11471488 TAGAATCGGT
* *
11471498 GAATTTAC-GACCTTAAACCCCTAAGCAGTAGGGTAACAGGTC
1 GAATTTACAGATCTTAACCCCCTAAGCAGTAGGGTAACAGGTC
* * *
11471540 GTATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC
1 GAATTTACAGATCTTAACCCCCTAAGCAGTAGGGTAACAGGTC
* * * * * *
11471583 GAAGATGA-TGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCC
1 GAA-TTTACAGATC-TTAACCCCCTAAGCAGTAGGGTAACAGGTC
* * ** * *
11471627 AAATTTACAGACCTTAAATCCCTAAGTAGTAGGGTAACAGGTT
1 GAATTTACAGATCTTAACCCCCTAAGCAGTAGGGTAACAGGTC
* * * * *
11471670 GAATGTATAGATCTTAACCCCCTAAGTAGTAGGGAAACAGATC
1 GAATTTACAGATCTTAACCCCCTAAGCAGTAGGGTAACAGGTC
* * * ** * *
11471713 GAAGATGA-TGGGCTTTAACCTCCTAAGCAGTAGGGTAACAAG-C
1 GAA-TTTACAGATC-TTAACCCCCTAAGCAGTAGGGTAACAGGTC
* * *
11471756 TGAATTTACAAATCTTAAACCCCTAAGTAGTAGGG
1 -GAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
11471791 AAATAGATCG
Statistics
Matches: 189, Mismatches: 54, Indels: 15
0.73 0.21 0.06
Matches are distributed among these distances:
42 7 0.04
43 121 0.64
44 61 0.32
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (43 bp):
GAATTTACAGATCTTAACCCCCTAAGCAGTAGGGTAACAGGTC
Found at i:11471666 original size:87 final size:86
Alignment explanation
Indices: 11471509--11471708 Score: 224
Period size: 87 Copynumber: 2.3 Consensus size: 86
11471499 AATTTACGAC
* * * ** * *
11471509 CTTAAACCCCTAAGCAGTAGGGTAACAGGTCGTATTTACAGATCTTAACCCCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGACCTTAAACCCCTAAGCAGTAGGG
*
11471574 AAACAGATCGAA-G-ATGATGAG
66 AAACAGATCGAATGTAT-A-GAT
* *
11471595 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGACCTTAAATCCCTAAGTAGTAGG
1 C-TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGACCTTAAACCCCTAAGCAGTAGG
* * *
11471660 GTAACAGGTTGAATGTATAGAT
65 GAAACAGATCGAATGTATAGAT
* *
11471682 CTTAACCCCCTAAGTAGTAGGGAAACA
1 CTTAACCCCCTAAGCAGTAGGGTAACA
11471709 GATCGAAGAT
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
86 25 0.26
87 67 0.70
88 2 0.02
89 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (86 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGACCTTAAACCCCTAAGCAGTAGGG
AAACAGATCGAATGTATAGAT
Found at i:11471738 original size:87 final size:87
Alignment explanation
Indices: 11471646--11471846 Score: 294
Period size: 87 Copynumber: 2.3 Consensus size: 87
11471636 GACCTTAAAT
* * * * *
11471646 CCCTAAGTAGTAGGGTAACAGGTTGAATGTATAGATCTTAACCCCCTAAGTAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATGTACAAATCTTAAACCCCTAAGTAGTAGGGAAACAGA
*
11471711 TCGAAGATGATGGGCTTTAACC
66 TCGAAGATGATGGGCCTTAACC
* * * *
11471733 TCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAATCTTAAACCCCTAAGTAGTAGGGAAATAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATGTACAAATCTTAAACCCCTAAGTAGTAGGGAAACAGA
*
11471798 TCGAGGATGATGGGCCTTAACC
66 TCGAAGATGATGGGCCTTAACC
*
11471820 CCCTAAGCAGTAGGGTAATAGGCTGAA
1 CCCTAAGCAGTAGGGTAACAGGCTGAA
11471847 AATTACAGAT
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 100 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (87 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAATGTACAAATCTTAAACCCCTAAGTAGTAGGGAAACAGA
TCGAAGATGATGGGCCTTAACC
Found at i:11471739 original size:130 final size:130
Alignment explanation
Indices: 11471499--11471834 Score: 460
Period size: 130 Copynumber: 2.6 Consensus size: 130
11471489 AGAATCGGTG
* * *
11471499 AATTTAC-GACCTTAAACCCCTAAGCAGTAGGGTAACAGGTCGTATTTACAGATCTTAACCCCCT
1 AATTTACAGACCTTAAACCCCTAAGTAGTAGGGTAACAGGTCGAATGTACAGATCTTAACCCCCT
11471563 AAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
66 AAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
* * *
11471628 AATTTACAGACCTTAAATCCCTAAGTAGTAGGGTAACAGGTTGAATGTATAGATCTTAACCCCCT
1 AATTTACAGACCTTAAACCCCTAAGTAGTAGGGTAACAGGTCGAATGTACAGATCTTAACCCCCT
* * * **
11471693 AAGTAGTAGGGAAACAGATCGAAGATGATGGGCTTTAACCTCCTAAGCAGTAGGGTAACAAGCTG
66 AAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
* * * * * ** **
11471758 AATTTACAAATCTTAAACCCCTAAGTAGTAGGGAAATAGATCGAGGATG-ATGGGCCTTAACCCC
1 AATTTACAGACCTTAAACCCCTAAGTAGTAGGGTAACAGGTCGA--ATGTACAGATCTTAACCCC
11471822 CTAAGCAGTAGGG
64 CTAAGCAGTAGGG
11471835 TAATAGGCTG
Statistics
Matches: 182, Mismatches: 22, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
129 7 0.04
130 148 0.81
131 24 0.13
132 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (130 bp):
AATTTACAGACCTTAAACCCCTAAGTAGTAGGGTAACAGGTCGAATGTACAGATCTTAACCCCCT
AAGCAGTAGGGAAACAGATCGAAGATGATGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
Found at i:11471840 original size:44 final size:43
Alignment explanation
Indices: 11471506--11471837 Score: 217
Period size: 43 Copynumber: 7.7 Consensus size: 43
11471496 GTGAATTTAC
* * * * *
11471506 GACCTTAAACCCCTAAGCAGTAGGGTAACAGGTCGTA-TTTACA
1 GACCTTAACCCCCTAAGCAGTAGGGTAACAGATCG-AGATGATA
* *
11471549 GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAT-
1 GACCTTAACCCCCTAAGCAGTAGGGTAACAGATCG-AGATGATA
* * * * * *
11471592 GAGCTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCAAATTTACA
1 GA-CCTTAACCCCCTAAGCAGTAGGGTAACAGATCGAGA-TGATA
** * * *
11471636 GACCTTAAATCCCTAAGTAGTAGGGTAACAGGTTGA-ATGTATA
1 GACCTTAACCCCCTAAGCAGTAGGGTAACAGATCGAGATG-ATA
* * * *
11471679 GATCTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATG
1 GACCTTAACCCCCTAAGCAGTAGGGTAACAGATCG-AGATGATA
* * * * * *
11471723 GGCTTTAACCTCCTAAGCAGTAGGGTAACA-AGCTGA-ATTTACA
1 GACCTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAGA-TGATA
* * * * * * *
11471766 AATCTTAAACCCCTAAGTAGTAGGGAAATAGATCGAGGATGATG
1 GACCTTAACCCCCTAAGCAGTAGGGTAACAGATCGA-GATGATA
*
11471810 GGCCTTAACCCCCTAAGCAGTAGGGTAA
1 GACCTTAACCCCCTAAGCAGTAGGGTAA
11471838 TAGGCTGAAA
Statistics
Matches: 214, Mismatches: 62, Indels: 25
0.71 0.21 0.08
Matches are distributed among these distances:
42 4 0.02
43 122 0.57
44 84 0.39
45 4 0.02
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (43 bp):
GACCTTAACCCCCTAAGCAGTAGGGTAACAGATCGAGATGATA
Found at i:11472099 original size:42 final size:42
Alignment explanation
Indices: 11472053--11472135 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
11472043 GAAATGGCGT
* *
11472053 TGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
1 TGGAGCGGATAAAAGCCACAGCAGAACTCCTTGAAGTTTCAG
** **
11472095 TGGAGTTGATTGAAGCCACAGCAGAACTCCTTGAAGTTTCA
1 TGGAGCGGATAAAAGCCACAGCAGAACTCCTTGAAGTTTCA
11472136 ACGAAAAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (42 bp):
TGGAGCGGATAAAAGCCACAGCAGAACTCCTTGAAGTTTCAG
Found at i:11472149 original size:42 final size:42
Alignment explanation
Indices: 11472065--11472156 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
11472055 GAGCGGCTAA
* ** * **
11472065 AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAGTTGATTG
1 AAGCCACAGCAGAACTCCTTGAAGTTTCAACGAAAATGATTG
11472107 AAGCCACAGCAGAACTCCTTGAAGTTTCAACGAAAAAT-ATTG
1 AAGCCACAGCAGAACTCCTTGAAGTTTCAACG-AAAATGATTG
*
11472149 AAGTCACA
1 AAGCCACA
11472157 AATCTTATCT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 40 0.95
43 2 0.05
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (42 bp):
AAGCCACAGCAGAACTCCTTGAAGTTTCAACGAAAATGATTG
Found at i:11473577 original size:3 final size:3
Alignment explanation
Indices: 11473560--11473608 Score: 84
Period size: 3 Copynumber: 17.0 Consensus size: 3
11473550 TTATTCATAA
11473560 TAT TA- TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11473606 TAT
1 TAT
11473609 GCTTGTATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 4 0.09
3 40 0.91
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:11473757 original size:42 final size:41
Alignment explanation
Indices: 11473667--11473820 Score: 238
Period size: 41 Copynumber: 3.8 Consensus size: 41
11473657 AGGGTTTTAA
* * * *
11473667 CGGCGTTTTTGGTAAAACGCCGCTAAAAAT-AGAGCAGTAG
1 CGGCGCTTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAG
*
11473707 CGGCGCTTTTTGTAAAAACGCCGCTAAAAGTCGGAGCAATAG
1 CGGCGCTTTTGGT-AAAACGCCGCTAAAAGTCGGAGCAATAG
*
11473749 CGGCGCTTTTGGTAAAACGCCGCTAAAAGTCGGAGCATTAG
1 CGGCGCTTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAG
11473790 CGGCGCTTTTGGTAAAACGCCGCTAAAAGTC
1 CGGCGCTTTTGGTAAAACGCCGCTAAAAGTC
11473821 ATATAACCCC
Statistics
Matches: 105, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
40 11 0.10
41 74 0.70
42 20 0.19
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (41 bp):
CGGCGCTTTTGGTAAAACGCCGCTAAAAGTCGGAGCAATAG
Found at i:11474055 original size:7 final size:7
Alignment explanation
Indices: 11474043--11474106 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
11474033 TTTATTTTTT
*
11474043 GGTTTAC
1 GGTTTAA
11474050 GGTTTAA
1 GGTTTAA
**
11474057 TATTTAA
1 GGTTTAA
11474064 GGTTTAA
1 GGTTTAA
* *
11474071 GGTCTAT
1 GGTTTAA
*
11474078 GGTTTAG
1 GGTTTAA
*
11474085 GGTTTTAT
1 GG-TTTAA
11474093 GGTTTAA
1 GGTTTAA
11474100 GGTTTAA
1 GGTTTAA
11474107 TGCCCATGGG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:11474095 original size:15 final size:15
Alignment explanation
Indices: 11474059--11474104 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
11474049 CGGTTTAATA
*
11474059 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
11474073 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
11474088 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
11474103 TT
1 TT
11474105 AATGCCCATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.20, C:0.02, G:0.28, T:0.50
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:11474707 original size:7 final size:7
Alignment explanation
Indices: 11474697--11474775 Score: 77
Period size: 7 Copynumber: 11.0 Consensus size: 7
11474687 AAATAAACTC
11474697 AAAATTT
1 AAAATTT
11474704 AAAAATTT
1 -AAAATTT
11474712 AAAATTT
1 AAAATTT
11474719 AAAATTT
1 AAAATTT
11474726 AAAATTT
1 AAAATTT
**
11474733 AAAAATAA
1 -AAAATTT
**
11474741 AAAATAA
1 AAAATTT
*
11474748 AAAACTT
1 AAAATTT
11474755 AAAATTT
1 AAAATTT
*
11474762 AATATTT
1 AAAATTT
*
11474769 AATATTT
1 AAAATTT
11474776 TAGTCCATAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
7 51 0.81
8 12 0.19
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (7 bp):
AAAATTT
Found at i:11474734 original size:29 final size:29
Alignment explanation
Indices: 11474680--11474763 Score: 93
Period size: 29 Copynumber: 3.0 Consensus size: 29
11474670 CATTAAACCG
*
11474680 AAATAAAAAAT---AAACTCAAAATTTAA
1 AAATAAAAAATAAAAAACTTAAAATTTAA
** ** *
11474706 AAATTTAAAATTTAAAATTTAAAATTTAA
1 AAATAAAAAATAAAAAACTTAAAATTTAA
11474735 AAATAAAAAATAAAAAACTTAAAATTTAA
1 AAATAAAAAATAAAAAACTTAAAATTTAA
11474764 TATTTAATAT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
26 9 0.20
29 37 0.80
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (29 bp):
AAATAAAAAATAAAAAACTTAAAATTTAA
Found at i:11476377 original size:28 final size:27
Alignment explanation
Indices: 11476334--11476440 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
11476324 GAATTTAATG
11476334 TTAA-CTGGGCCTTAGCCCATATCAGTA
1 TTAATCTGGGCC-TAGCCCATATCAGTA
*
11476361 TTAATCTGGGCCATAGCCC-TATTACAATA
1 TTAATCTGGGCC-TAGCCCATA-T-CAGTA
*
11476390 TCAGAGCATACTGGGCCTAGCCCATATCAGTA
1 T--TA--AT-CTGGGCCTAGCCCATATCAGTA
* *
11476422 TCAGTCTGGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
11476441 TATTACAAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 19
0.72 0.07 0.21
Matches are distributed among these distances:
27 13 0.20
28 21 0.33
29 5 0.08
30 1 0.02
31 1 0.02
32 5 0.08
33 9 0.14
34 9 0.14
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAGTA
Found at i:11476512 original size:19 final size:20
Alignment explanation
Indices: 11476469--11476524 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
11476459 ATTGGGTCTT
11476469 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
11476489 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
11476508 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
11476525 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:11477140 original size:8 final size:8
Alignment explanation
Indices: 11477127--11477155 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
11477117 CAAATGCGAA
11477127 CTTTTCGG
1 CTTTTCGG
11477135 CTTTTCGG
1 CTTTTCGG
11477143 CTTTTCGG
1 CTTTTCGG
11477151 CTTTT
1 CTTTT
11477156 GCCGATCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.21, T:0.55
Consensus pattern (8 bp):
CTTTTCGG
Found at i:11482631 original size:43 final size:43
Alignment explanation
Indices: 11482566--11482792 Score: 294
Period size: 43 Copynumber: 5.3 Consensus size: 43
11482556 TATCATTATT
* * * * *
11482566 TTTAGCGGCGTTTGTGAGAAAAGTGCTGCTAAAGGTTATGATC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
11482609 TTTAGCAGCGTTTGTGAAAAAAGCGCCACTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
11482652 TTTAGCGGCGTTTGCT-TAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTG-TGAAAAAAGCGCCGCTAAAGGTCATGGTC
* * **
11482695 TTTAGCGACATTTGCAAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
* * *
11482738 TTTAGCGGCGTTTGCGAAAAAGGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
11482781 TTTAGCGACGTT
1 TTTAGCGGCGTT
11482793 GTTTTCAAAA
Statistics
Matches: 162, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
43 161 0.99
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:11483138 original size:21 final size:22
Alignment explanation
Indices: 11483076--11483147 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 22
11483066 TATGAATATT
* *
11483076 TATTTTTTAAACATTATGTATATA
1 TATTTTATATACATTATG--TATA
*
11483100 TATTTTATGTACATTATGTATA
1 TATTTTATATACATTATGTATA
* **
11483122 TATTTTA-ATATATTATGCGTA
1 TATTTTATATACATTATGTATA
11483143 TATTT
1 TATTT
11483148 CGTTTTGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
21 15 0.37
22 11 0.27
24 15 0.37
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (22 bp):
TATTTTATATACATTATGTATA
Found at i:11483228 original size:7 final size:6
Alignment explanation
Indices: 11483201--11483226 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
11483191 TATTATATAC
11483201 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
11483227 TAATATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:11483735 original size:21 final size:22
Alignment explanation
Indices: 11483692--11483735 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
11483682 TCAAACCTTA
** *
11483692 AATTATTCATTATTTGTATCAT
1 AATTATTCATTATTACTAACAT
11483714 AATTATT-ATTATTACTAACAT
1 AATTATTCATTATTACTAACAT
11483735 A
1 A
11483736 TATATATACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (22 bp):
AATTATTCATTATTACTAACAT
Found at i:11495600 original size:19 final size:19
Alignment explanation
Indices: 11495578--11495624 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 19
11495568 AGCAAATTAG
11495578 TCCTTTCTGTTCAAAATCA
1 TCCTTTCTGTTCAAAATCA
11495597 TCCTTTCTGTTCAAAATCA
1 TCCTTTCTGTTCAAAATCA
11495616 TCCGTTTCT
1 TCC-TTTCT
11495625 ATCATTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 22 0.81
20 5 0.19
ACGTcount: A:0.21, C:0.28, G:0.06, T:0.45
Consensus pattern (19 bp):
TCCTTTCTGTTCAAAATCA
Found at i:11498385 original size:18 final size:18
Alignment explanation
Indices: 11498362--11498396 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
11498352 ATTTCTTTTT
*
11498362 TTTAAAAAAAACACACAA
1 TTTAAAAAAAAAACACAA
11498380 TTTAAAAAAAAAACACA
1 TTTAAAAAAAAAACACA
11498397 TTTTTCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (18 bp):
TTTAAAAAAAAAACACAA
Found at i:11501653 original size:17 final size:17
Alignment explanation
Indices: 11501631--11501665 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
11501621 TTATACATTG
11501631 TGTAATTCAATTTTTTT
1 TGTAATTCAATTTTTTT
**
11501648 TGTAATTTTATTTTTTT
1 TGTAATTCAATTTTTTT
11501665 T
1 T
11501666 ATCATTTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.71
Consensus pattern (17 bp):
TGTAATTCAATTTTTTT
Found at i:11501672 original size:17 final size:17
Alignment explanation
Indices: 11501640--11501674 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
11501630 GTGTAATTCA
*
11501640 ATTTTTTTTGTAATTTT
1 ATTTTTTTTATAATTTT
*
11501657 ATTTTTTTTATCATTTT
1 ATTTTTTTTATAATTTT
11501674 A
1 A
11501675 CTTAAAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (17 bp):
ATTTTTTTTATAATTTT
Found at i:11503613 original size:19 final size:20
Alignment explanation
Indices: 11503579--11503625 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
11503569 AGTTTTAGTC
*
11503579 TCAAGTTTTGATTCTCAGGT
1 TCAATTTTTGATTCTCAGGT
*
11503599 TCAATTTTTGA-TCTCGGGT
1 TCAATTTTTGATTCTCAGGT
*
11503618 CCAATTTT
1 TCAATTTT
11503626 CAAGTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (20 bp):
TCAATTTTTGATTCTCAGGT
Found at i:11505016 original size:15 final size:15
Alignment explanation
Indices: 11504996--11505026 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11504986 ATTTCCCAAC
*
11504996 AACCCTATGTTTTCA
1 AACCCTATATTTTCA
11505011 AACCCTATATTTTCA
1 AACCCTATATTTTCA
11505026 A
1 A
11505027 GATATCCTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (15 bp):
AACCCTATATTTTCA
Found at i:11506421 original size:27 final size:27
Alignment explanation
Indices: 11506347--11506409 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
11506337 AAGATTCAAC
* *
11506347 ATAAATAAAATAT-AA-ACAATTTGAA
1 ATAAATAATATATAAAGAAAATTTGAA
*
11506372 ATAAATAATATATAAAGAAAATTTTAA
1 ATAAATAATATATAAAGAAAATTTGAA
11506399 ATAAATAATAT
1 ATAAATAATAT
11506410 GCTAAATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 12 0.36
26 2 0.06
27 19 0.58
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (27 bp):
ATAAATAATATATAAAGAAAATTTGAA
Found at i:11506653 original size:28 final size:28
Alignment explanation
Indices: 11506600--11506654 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
11506590 TATATAAAAG
*
11506600 TTTTAAAATAAAGAATATATAAAAAATA
1 TTTTAAAATAAAGAATACATAAAAAATA
*
11506628 TTTTAAAAT-AAGTAATACATAGAAAAT
1 TTTTAAAATAAAG-AATACATAAAAAAT
11506655 TCAAAACGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (28 bp):
TTTTAAAATAAAGAATACATAAAAAATA
Found at i:11507125 original size:3 final size:3
Alignment explanation
Indices: 11507110--11507525 Score: 156
Period size: 3 Copynumber: 141.0 Consensus size: 3
11507100 GAATATAAAT
* * *
11507110 ATA ATA CTA ATA ATA ATA AT- ATA ATA ATG ATA ATA GTA ATA A-A A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
11507155 ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
11507203 ATA AT- GTAA ATAA ATA CA-A A-A AGA A-A ATA TATA AT- GTG ACA A-A
1 ATA ATA AT-A AT-A ATA -ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * * **
11507246 ATTA AT- ATA A-A ATTA ATTA GT- TTA ATA AT- ATG ATG ATA GCA ATA
1 A-TA ATA ATA ATA A-TA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
11507290 GTA ATA AT- ATA ATA ATA A-A GTA GAAA ATA ATA AGA ATA ATA CATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA -A-TA
* * * * * *
11507336 ATA AAA ATA ATA ATA GT- ATA TTA ATT ATA ACA ATA ATA GAAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * *
11507381 ATG ATA A-A ATA ATA ATA ATA ATA A-A CTA AGGA ATA CTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
* * * * * * **
11507425 CTA ACA ATA AT- ATAA ATA ATA ATA AAA ACA ACA AGA GA-A ATA GCA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * * *
11507470 ACA ATA ATA GTA ATA A-G AGA ATA A-A AGTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
**
11507514 GCA ATA ATA ATA
1 ATA ATA ATA ATA
11507526 GAATTAACAA
Statistics
Matches: 311, Mismatches: 69, Indels: 66
0.70 0.15 0.15
Matches are distributed among these distances:
2 35 0.11
3 246 0.79
4 28 0.09
5 2 0.01
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:11507320 original size:26 final size:25
Alignment explanation
Indices: 11507291--11507350 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
11507281 ATAGCAATAG
11507291 TAATAATATAATA-ATAAAGTAGAAAA
1 TAATAATATAATACATAAA-TA-AAAA
* *
11507317 TAATAAGAATAATACATTAATAAAAA
1 TAATAA-TATAATACATAAATAAAAA
11507343 TAATAATA
1 TAATAATA
11507351 GTATATTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 16 0.55
27 8 0.28
28 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (25 bp):
TAATAATATAATACATAAATAAAAA
Found at i:11507536 original size:18 final size:18
Alignment explanation
Indices: 11507515--11507554 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
11507505 ATAATAATAG
*
11507515 CAATAATAATAGAATTAA-
1 CAATAA-AATAAAATTAAT
11507533 CAATAAAATAAAATTAAT
1 CAATAAAATAAAATTAAT
11507551 CAAT
1 CAAT
11507555 TTTAATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (18 bp):
CAATAAAATAAAATTAAT
Found at i:11507547 original size:17 final size:19
Alignment explanation
Indices: 11507498--11507554 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
11507488 GAATAAAAGT
*
11507498 AATAATAATAATAA-T-AGC
1 AATAATAATAA-AATTAATC
*
11507516 AATAATAATAGAATTAA-C
1 AATAATAATAAAATTAATC
11507534 AATAA-AATAAAATTAATC
1 AATAATAATAAAATTAATC
11507552 AAT
1 AAT
11507555 TTTAATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 12 0.35
18 21 0.62
19 1 0.03
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (19 bp):
AATAATAATAAAATTAATC
Found at i:11514147 original size:22 final size:23
Alignment explanation
Indices: 11514113--11514161 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
11514103 TACTAACATG
*
11514113 TATATATACTATATATTTTTAT-
1 TATATATACTATACATTTTTATA
*
11514135 TATAT-TACGTATACGTTTTTATA
1 TATATATAC-TATACATTTTTATA
11514158 TATA
1 TATA
11514162 CGCTATGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.13
22 16 0.70
23 4 0.17
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (23 bp):
TATATATACTATACATTTTTATA
Found at i:11526334 original size:43 final size:43
Alignment explanation
Indices: 11526310--11526424 Score: 203
Period size: 43 Copynumber: 2.7 Consensus size: 43
11526300 CACTAGCCTT
11526310 ATCTCCCTGAAGTGCAGTGGAGCAGACTGAAGTTACAAGTCCC
1 ATCTCCCTGAAGTGCAGTGGAGCAGACTGAAGTTACAAGTCCC
*
11526353 ATCTTCCTGAAGTGCAGTGGAGCAGACTGAAGTTACAAGTCCC
1 ATCTCCCTGAAGTGCAGTGGAGCAGACTGAAGTTACAAGTCCC
*
11526396 ATCTCCTTGAAGTCGCAGTGGAGCAGACT
1 ATCTCCCTGAAGT-GCAGTGGAGCAGACT
11526425 AAATGTACAG
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
43 53 0.78
44 15 0.22
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (43 bp):
ATCTCCCTGAAGTGCAGTGGAGCAGACTGAAGTTACAAGTCCC
Found at i:11526835 original size:42 final size:43
Alignment explanation
Indices: 11526779--11526895 Score: 130
Period size: 42 Copynumber: 2.7 Consensus size: 43
11526769 TTTCAAACCT
* * *
11526779 TAAACCCCTAAGCAGTAGGGTAACAGGTTGA-GTTTAC-AGATC
1 TAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG-CC
* * **
11526821 TAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAGCC
1 TAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAGCC
*
11526864 TTAACCCCTTAAGCAGTAGGGTAACAGGTTGA
1 TAAACCCC-TAAGCAGTAGGGTAACAGGTTGA
11526896 AAATCAAATA
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 27 0.45
43 12 0.20
44 21 0.35
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (43 bp):
TAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAGCC
Found at i:11526995 original size:42 final size:42
Alignment explanation
Indices: 11526945--11527065 Score: 181
Period size: 41 Copynumber: 2.9 Consensus size: 42
11526935 TAAAAACCAT
*
11526945 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCAAAGCTAC
1 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCAAAGCCAC
* * *
11526987 AGTAGATCTCCTTGAAGTTTCAGTGG-ATTAATCGAAGCCAC
1 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCAAAGCCAC
* *
11527028 AGCAGATCTCCTTGAAGTTTCAATGGAATTGATTAAAG
1 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCAAAG
11527066 TCACGTGTCT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 36 0.52
42 33 0.48
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (42 bp):
AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCAAAGCCAC
Found at i:11528451 original size:2 final size:2
Alignment explanation
Indices: 11528444--11528468 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11528434 ATCATTTTAT
11528444 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
11528469 GTTATAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11528985 original size:22 final size:23
Alignment explanation
Indices: 11528951--11528999 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
11528941 TACTAACATG
*
11528951 TATATATACTATATATTTTTAT-
1 TATATATACTATACATTTTTATA
*
11528973 TATAT-TACGTATACGTTTTTATA
1 TATATATAC-TATACATTTTTATA
11528996 TATA
1 TATA
11529000 CGCTATGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.13
22 16 0.70
23 4 0.17
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (23 bp):
TATATATACTATACATTTTTATA
Found at i:11533444 original size:10 final size:10
Alignment explanation
Indices: 11533429--11533456 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
11533419 TTCTAATTAT
11533429 AAAATAATAA
1 AAAATAATAA
11533439 AAAATAATAA
1 AAAATAATAA
11533449 AAAATAAT
1 AAAATAAT
11533457 TTTTTATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAATAATAA
Found at i:11539525 original size:42 final size:43
Alignment explanation
Indices: 11539467--11539569 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
11539457 ATTGATTTGA
11539467 GATTTACGTGTAAGACCATGCCTAAGACA-TCGGCATCG-TATTT
1 GATTT-CGTGTAAGACCATGCCTAAGACAGT-GGCATCGATATTT
* * **
11539510 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTT
1 GATTTCGTGTAAGACCATGCCTAAGACAGTGGCATCGATATTT
* *
11539553 GATTACATGTAAGACCA
1 GATTTCGTGTAAGACCA
11539570 CGTCTGAGAC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATGCCTAAGACAGTGGCATCGATATTT
Found at i:11539586 original size:43 final size:42
Alignment explanation
Indices: 11539470--11539587 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
11539460 GATTTGAGAT
* * * * *
11539470 TTACGTGTAAGACCATGCCTAAGACATCGGCATCGTATTTGA
1 TTACGTGTAAGACCACGTCTGAGACGTTGGCATCGTATTTGA
* *
11539512 TTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGA
1 TTACGTGTAAGACCAC-GTCTGAGAC-GTTGGCATCG-TATTTGA
*
11539555 TTACATGTAAGACCACGTCTGAGACGTTGGCAT
1 TTACGTGTAAGACCACGTCTGAGACGTTGGCAT
11539588 TGTAAGAGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
42 27 0.44
43 33 0.54
44 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCTGAGACGTTGGCATCGTATTTGA
Found at i:11544481 original size:27 final size:27
Alignment explanation
Indices: 11544435--11544487 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
11544425 AAGCTCTTTA
*
11544435 AGTGTAATGGGAAGCTTAATTTGACAT
1 AGTGTAATGGGAAGCCTAATTTGACAT
*
11544462 AGTGTAATGGGGAGCCTAATTTGACA
1 AGTGTAATGGGAAGCCTAATTTGACA
11544488 CGACAGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.30
Consensus pattern (27 bp):
AGTGTAATGGGAAGCCTAATTTGACAT
Found at i:11547912 original size:38 final size:38
Alignment explanation
Indices: 11547870--11547943 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
11547860 TACTGGTTGA
* *
11547870 ATGCCTATTGTCACTATTGAACTGAATACATGTTAAAC
1 ATGCCTACTATCACTATTGAACTGAATACATGTTAAAC
* *
11547908 ATGCCTACTATTACTATTGAACTTAATACATGTTAA
1 ATGCCTACTATCACTATTGAACTGAATACATGTTAA
11547944 GCATACCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (38 bp):
ATGCCTACTATCACTATTGAACTGAATACATGTTAAAC
Found at i:11547966 original size:38 final size:38
Alignment explanation
Indices: 11547882--11547970 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 38
11547872 GCCTATTGTC
* * * *
11547882 ACTATTGAACTGAATACATGTTAAACATGCCTACTATT
1 ACTATTGAACTTAATACATGTTAAACATACCAACTACT
* * *
11547920 ACTATTGAACTTAATACATGTTAAGCATACCAATTGCT
1 ACTATTGAACTTAATACATGTTAAACATACCAACTACT
*
11547958 ACTGTTGAA-TTAA
1 ACTATTGAACTTAA
11547971 ACTTTGCTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 4 0.09
38 39 0.91
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (38 bp):
ACTATTGAACTTAATACATGTTAAACATACCAACTACT
Found at i:11550308 original size:3 final size:3
Alignment explanation
Indices: 11550295--11550388 Score: 54
Period size: 3 Copynumber: 31.7 Consensus size: 3
11550285 ATTCTGTAGC
* * *
11550295 ATT ATTT ATT ATT A-T ATT AACT GTT ATT ATT ATT ATT ATC A-T ATT
1 ATT A-TT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * **
11550340 CATT AAT A-T ATT ATT ATT ATT -TCT ACT A-T ACC ATT ATT ATT ATT
1 -ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT
11550384 ATT AT
1 ATT AT
11550389 ATATATACAT
Statistics
Matches: 71, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
2 8 0.11
3 55 0.77
4 8 0.11
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:11550395 original size:26 final size:26
Alignment explanation
Indices: 11550295--11550396 Score: 79
Period size: 26 Copynumber: 3.8 Consensus size: 26
11550285 ATTCTGTAGC
**
11550295 ATTATTTATTATTATAT-TA-ACTGTT
1 ATTA-TTATTATTATATATATACCATT
11550320 ATTATTATTATTATCATAT-T--CATT
1 ATTATTATTATTAT-ATATATACCATT
*
11550344 AATATATTATTATTATTTCTACTATACCATT
1 -AT-TATTATTATTA--TATA-TATACCATT
11550375 ATTATTATTATTATATATATAC
1 ATTATTATTATTATATATATAC
11550397 ATACCTTTTA
Statistics
Matches: 62, Mismatches: 4, Indels: 21
0.71 0.05 0.24
Matches are distributed among these distances:
24 12 0.19
25 8 0.13
26 17 0.27
27 5 0.08
28 2 0.03
29 12 0.19
30 2 0.03
31 4 0.06
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (26 bp):
ATTATTATTATTATATATATACCATT
Found at i:11550430 original size:25 final size:24
Alignment explanation
Indices: 11550350--11550441 Score: 51
Period size: 26 Copynumber: 3.5 Consensus size: 24
11550340 CATTAATATA
* *
11550350 TTATTATTATT-TCTACTATACCATT
1 TTATTATTATTATATAC-ATA-TATT
*
11550375 ATTATTATTATTATATATATACATACCTT
1 -TTATTATTATTATATACAT--ATA--TT
*
11550404 TTATTATTATTCATGTACATATATT
1 TTATTATTATT-ATATACATATATT
*
11550429 TTAAATATTATTA
1 TT-ATTATTATTA
11550442 CCATTATTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
25 5 0.09
26 21 0.40
27 7 0.13
28 12 0.23
29 8 0.15
ACGTcount: A:0.35, C:0.10, G:0.01, T:0.54
Consensus pattern (24 bp):
TTATTATTATTATATACATATATT
Found at i:11550924 original size:13 final size:13
Alignment explanation
Indices: 11550906--11550930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11550896 ATTATGTATG
11550906 TATATATTTCTTT
1 TATATATTTCTTT
11550919 TATATATTTCTT
1 TATATATTTCTT
11550931 ATTACTTCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATATTTCTTT
Found at i:11552183 original size:31 final size:31
Alignment explanation
Indices: 11552123--11552197 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
11552113 ATTTCTTTAA
* * *
11552123 ATGTATACAATTGAATCAAAATTAGAGTTTC
1 ATGTATACAATTGAACCAAAATCAAAGTTTC
* * *
11552154 ATGTATACATTTGAACCACAATCAAAGTTTT
1 ATGTATACAATTGAACCAAAATCAAAGTTTC
* *
11552185 ATGTGTATAATTG
1 ATGTATACAATTG
11552198 CACTGAATCA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (31 bp):
ATGTATACAATTGAACCAAAATCAAAGTTTC
Found at i:11554234 original size:17 final size:18
Alignment explanation
Indices: 11554195--11554237 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
11554185 AAAATTCAAA
* *
11554195 AAAAACTTTATAAAAATT
1 AAAAATTTTATAAAAAGT
*
11554213 TAAAATTTTAT-AAAAGT
1 AAAAATTTTATAAAAAGT
11554230 AAAAATTT
1 AAAAATTT
11554238 CTGAAAAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAAATTTTATAAAAAGT
Found at i:11557576 original size:15 final size:15
Alignment explanation
Indices: 11557556--11557600 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
11557546 CTACTACATA
*
11557556 TATTATTCTCATTAT
1 TATTATTATCATTAT
11557571 TATTATTATCATTAT
1 TATTATTATCATTAT
*
11557586 TATTACTATCATTAT
1 TATTATTATCATTAT
11557601 ACTTTAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTATTATCATTAT
Found at i:11560619 original size:29 final size:29
Alignment explanation
Indices: 11560579--11560644 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
11560569 AGAAAATTGA
* * *
11560579 ATAATAGAGTGACCATTTTGTAACTTTTC
1 ATAATTGAGTGACAATTTTATAACTTTTC
* *
11560608 ATAGTTGAGTGACAATTTTATAACTTTTT
1 ATAATTGAGTGACAATTTTATAACTTTTC
11560637 ATAATTGA
1 ATAATTGA
11560645 ATAACAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (29 bp):
ATAATTGAGTGACAATTTTATAACTTTTC
Found at i:11560651 original size:29 final size:29
Alignment explanation
Indices: 11560593--11560651 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
11560583 TAGAGTGACC
* * * *
11560593 ATTTTGTAACTTTTCATAGTTGAGTGACA
1 ATTTTATAACTTTTCATAATTGAATAACA
*
11560622 ATTTTATAACTTTTTATAATTGAATAACA
1 ATTTTATAACTTTTCATAATTGAATAACA
11560651 A
1 A
11560652 AAAGAGAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (29 bp):
ATTTTATAACTTTTCATAATTGAATAACA
Found at i:11561799 original size:2 final size:2
Alignment explanation
Indices: 11561792--11561816 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11561782 CCTTTAAAAT
11561792 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
11561817 TTAAAGATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11562828 original size:22 final size:22
Alignment explanation
Indices: 11562800--11562843 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
11562790 ATATTTATAT
11562800 TTTTTATAT-TTTGATAAATTTA
1 TTTTTATATCTTT-ATAAATTTA
*
11562822 TTTTTATATCTTTATACATTTA
1 TTTTTATATCTTTATAAATTTA
11562844 ATGACTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTTATATCTTTATAAATTTA
Found at i:11567919 original size:21 final size:21
Alignment explanation
Indices: 11567861--11567975 Score: 106
Period size: 21 Copynumber: 5.5 Consensus size: 21
11567851 CGTGTTTTAC
* *
11567861 TTTCTGTTTAGCTCGTAAGAG
1 TTTCTGTTCAGCTCTTAAGAG
* * *
11567882 CTTT-TGTTTAACTCTTATGAG
1 -TTTCTGTTCAGCTCTTAAGAG
* *
11567903 TTTCTATTCAGCTCTTACGAG
1 TTTCTGTTCAGCTCTTAAGAG
* *
11567924 CTTCTGTTCAACTCTTAAGAG
1 TTTCTGTTCAGCTCTTAAGAG
* *
11567945 TTTCTGTTCAGCTCTCACGAG
1 TTTCTGTTCAGCTCTTAAGAG
*
11567966 CTTCTGTTCA
1 TTTCTGTTCA
11567976 ACTTTCAAGC
Statistics
Matches: 76, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
20 3 0.04
21 70 0.92
22 3 0.04
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (21 bp):
TTTCTGTTCAGCTCTTAAGAG
Found at i:11568041 original size:41 final size:41
Alignment explanation
Indices: 11567861--11568096 Score: 156
Period size: 42 Copynumber: 5.7 Consensus size: 41
11567851 CGTGTTTTAC
* * ** * * *
11567861 TTTCTGTTTAGCTCGTAAGAGCTTTTGTTTAACTCTTATGAG
1 TTTCTGTTCAGCTCTTTTGAGCTTCTG-TTAACCCTTATGGG
* ** * * *
11567903 TTTCTATTCAGCTCTTACGAGCTTCTGTTCAACTCTTAAGAG
1 TTTCTGTTCAGCTCTTTTGAGCTTCTGTT-AACCCTTATGGG
*** * * *
11567945 TTTCTGTTCAGCTCTCACGAGCTTCTGTTCAA-CTTTCA-AGC
1 TTTCTGTTCAGCTCTTTTGAGCTTCTGTT-AACCCTT-ATGGG
*
11567986 TTT-AGTTCAGCTCTTTTGAGCTTCTGTTAACCCTTATGGG
1 TTTCTGTTCAGCTCTTTTGAGCTTCTGTTAACCCTTATGGG
* * *
11568026 TTT-TCGTTCAGCTCTTTTAAGCTTCTATTTGACCCTTATGGG
1 TTTCT-GTTCAGCTCTTTTGAGCTTCT-GTTAACCCTTATGGG
* **
11568068 TTTCTGTTTAGCTCTCATGAGCTTCTGTT
1 TTTCTGTTCAGCTCTTTTGAGCTTCTGTT
11568097 TAGCCTCCGA
Statistics
Matches: 158, Mismatches: 29, Indels: 15
0.78 0.14 0.07
Matches are distributed among these distances:
39 3 0.02
40 28 0.18
41 29 0.18
42 97 0.61
43 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.45
Consensus pattern (41 bp):
TTTCTGTTCAGCTCTTTTGAGCTTCTGTTAACCCTTATGGG
Found at i:11568113 original size:19 final size:21
Alignment explanation
Indices: 11568070--11568113 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
11568060 CTTATGGGTT
* *
11568070 TCTGTTTAGCTCTCATGAGCT
1 TCTGTTTAGCTCTCACGAGCA
11568091 TCTGTTTAGC-CTC-CGAGCA
1 TCTGTTTAGCTCTCACGAGCA
11568110 TCTG
1 TCTG
11568114 AAAACGATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.38
20 3 0.14
21 10 0.48
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39
Consensus pattern (21 bp):
TCTGTTTAGCTCTCACGAGCA
Found at i:11577106 original size:17 final size:17
Alignment explanation
Indices: 11577086--11577127 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
11577076 TTACTTATTA
11577086 TTTATTTTGATTTTGAT
1 TTTATTTTGATTTTGAT
* *
11577103 TTTATTTTTATTTTTAT
1 TTTATTTTGATTTTGAT
11577120 TTT-TTTTG
1 TTTATTTTG
11577128 CATGTTGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (17 bp):
TTTATTTTGATTTTGAT
Found at i:11577123 original size:6 final size:6
Alignment explanation
Indices: 11577080--11577123 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
11577070 TTATAGTTAC
* *
11577080 TTATTAT TTATTT TGATTT TGA-TT TTATTT TTATTT TTATTT TT
1 TTATT-T TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TT
11577124 TTTGCATGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
5 4 0.12
6 25 0.74
7 5 0.15
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:11579024 original size:20 final size:20
Alignment explanation
Indices: 11578999--11579036 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11578989 TTGTATAGGA
*
11578999 TTGCACTTTGGTCCCTCTAT
1 TTGCACATTGGTCCCTCTAT
*
11579019 TTGCACATTGGTTCCTCT
1 TTGCACATTGGTCCCTCT
11579037 GTTAGCAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.29, G:0.16, T:0.45
Consensus pattern (20 bp):
TTGCACATTGGTCCCTCTAT
Found at i:11587277 original size:27 final size:27
Alignment explanation
Indices: 11587239--11587302 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
11587229 AACTCAGTTT
* *
11587239 GTAAAATCACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
11587266 GTAAAATGACCGTAATACCCTTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
11587293 GTAAAATGAC
1 GTAAAATGAC
11587303 GATTATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:11590138 original size:20 final size:20
Alignment explanation
Indices: 11590113--11590151 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
11590103 CCTATAGTGT
11590113 AGACAAGCCACCAGTAATGC
1 AGACAAGCCACCAGTAATGC
*
11590133 AGACAAGCTACCAGTAATG
1 AGACAAGCCACCAGTAATG
11590152 TGATAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.26, G:0.21, T:0.13
Consensus pattern (20 bp):
AGACAAGCCACCAGTAATGC
Found at i:11593705 original size:28 final size:26
Alignment explanation
Indices: 11593643--11593703 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 26
11593633 TTAGGTTCCA
11593643 TTTTATTTTTAAAAA-TATTTTATAT
1 TTTTATTTTTAAAAATTATTTTATAT
*
11593668 TTTTATTTTTAAAAATTAACTTT-TAT
1 TTTTATTTTTAAAAATT-ATTTTATAT
11593694 TTTTATTTTT
1 TTTTATTTTT
11593704 TTGAAAATTG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 15 0.45
26 14 0.42
27 4 0.12
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTTATTTTTAAAAATTATTTTATAT
Found at i:11596626 original size:2 final size:2
Alignment explanation
Indices: 11596619--11596664 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
11596609 TTACTTGTTC
11596619 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11596661 AT AT
1 AT AT
11596665 CTTATACATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11597823 original size:22 final size:23
Alignment explanation
Indices: 11597774--11597823 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
11597764 AATTTCATAG
11597774 ACCAAAATCGTTGTTTTAATAAA
1 ACCAAAATCGTTGTTTTAATAAA
11597797 A-CAAAAT-GTT-TTATTAA-AATA
1 ACCAAAATCGTTGTT-TTAATAA-A
11597818 ACCAAA
1 ACCAAA
11597824 TTTCTAGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
20 4 0.17
21 9 0.38
22 10 0.42
23 1 0.04
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (23 bp):
ACCAAAATCGTTGTTTTAATAAA
Found at i:11600760 original size:14 final size:15
Alignment explanation
Indices: 11600741--11600771 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
11600731 AATGCCTCTT
11600741 TTTGCATTCA-TTCA
1 TTTGCATTCATTTCA
11600755 TTTGCATTCATTTCA
1 TTTGCATTCATTTCA
11600770 TT
1 TT
11600772 CATTTGCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.55
Consensus pattern (15 bp):
TTTGCATTCATTTCA
Found at i:11600764 original size:10 final size:10
Alignment explanation
Indices: 11600749--11600787 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
11600739 TTTTTGCATT
11600749 CATTCATTTG
1 CATTCATTTG
11600759 CATTCATTT-
1 CATTCATTTG
11600768 CATTCATTTG
1 CATTCATTTG
11600778 CATTACATTT
1 CATT-CATTT
11600788 CGTCATATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.33
10 13 0.48
11 5 0.19
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (10 bp):
CATTCATTTG
Found at i:11600771 original size:19 final size:20
Alignment explanation
Indices: 11600747--11600808 Score: 83
Period size: 19 Copynumber: 3.2 Consensus size: 20
11600737 TCTTTTTGCA
11600747 TTCATTCATTTGCATT-CAT
1 TTCATTCATTTGCATTACAT
11600766 TTCATTCATTTGCATTACAT
1 TTCATTCATTTGCATTACAT
* * *
11600786 TTC-GTCATATGCATTAAAT
1 TTCATTCATTTGCATTACAT
11600805 TTCA
1 TTCA
11600809 CAAAAAGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
19 32 0.84
20 6 0.16
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (20 bp):
TTCATTCATTTGCATTACAT
Found at i:11601960 original size:17 final size:16
Alignment explanation
Indices: 11601912--11601966 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
11601902 TAGGAAATTC
*
11601912 TATTTTAAGTTTAT-T
1 TATTTTAATTTTATAT
*
11601927 TATTTTTAATTAT-TAT
1 TA-TTTTAATTTTATAT
11601943 TATTTTAGATTTTATAT
1 TATTTTA-ATTTTATAT
11601960 TAATTTT
1 T-ATTTT
11601967 CTTAAGTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 8 0.25
16 15 0.47
17 4 0.12
18 5 0.16
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (16 bp):
TATTTTAATTTTATAT
Found at i:11606057 original size:17 final size:17
Alignment explanation
Indices: 11606018--11606065 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
11606008 TAAACCCAAT
*
11606018 TAAATCCAATACCCACA
1 TAAACCCAATACCCACA
*
11606035 TAAACCCAATACCCATA
1 TAAACCCAATACCCACA
*
11606052 TGAACCCAA-ACCCA
1 TAAACCCAATACCCA
11606066 AATCATCCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 5 0.18
17 23 0.82
ACGTcount: A:0.46, C:0.38, G:0.02, T:0.15
Consensus pattern (17 bp):
TAAACCCAATACCCACA
Found at i:11608948 original size:13 final size:13
Alignment explanation
Indices: 11608930--11608976 Score: 69
Period size: 13 Copynumber: 3.6 Consensus size: 13
11608920 GAAAGTAAAT
11608930 TAATAAATAATAA
1 TAATAAATAATAA
*
11608943 TAATAAAGTAA-AT
1 TAATAAA-TAATAA
11608956 TAATAAATAATAA
1 TAATAAATAATAA
11608969 TAATAAAT
1 TAATAAAT
11608977 TAAATTAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 3 0.10
13 24 0.80
14 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (13 bp):
TAATAAATAATAA
Found at i:11608951 original size:26 final size:26
Alignment explanation
Indices: 11608921--11608984 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
11608911 CTGCCAAGAG
11608921 AAAGTAAATTAATAAATAATAATAAT
1 AAAGTAAATTAATAAATAATAATAAT
11608947 AAAGTAAATTAATAAATAATAATAAT
1 AAAGTAAATTAATAAATAATAATAAT
*
11608973 AAATTAAATTAA
1 AAAGTAAATTAA
11608985 ATTAAATTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (26 bp):
AAAGTAAATTAATAAATAATAATAAT
Found at i:11613178 original size:96 final size:97
Alignment explanation
Indices: 11613014--11613206 Score: 266
Period size: 96 Copynumber: 2.0 Consensus size: 97
11613004 GAATTAATTT
* * *
11613014 TTAAGAATATGTTGGGCTGAGTAACCGAGGTGAGGTTCTTGGCTATCATCTCTTTTTGCGTCAAA
1 TTAAGAATATGTTGGGCTGAGTAACCGAGGTGAGGTGCTTGGCTATCATCTCTCTTCGCGTCAAA
** * *
11613079 AGGTTTGATATGTTCTTAAG-AAAAATAAAAA
66 AGGTTCAATATATTCCTAAGTAAAAATAAAAA
* *
11613110 TTAAGAGTATGTTGGGCTGAGTAACCG-GGAT-AGGGTGCTTGGCTGTCATCTCTCTTCGCGTCA
1 TTAAGAATATGTTGGGCTGAGTAACCGAGG-TGA-GGTGCTTGGCTATCATCTCTCTTCGCGTCA
11613173 AAAGGTTCAATATATTCCTAAGTAAAAATAAAAA
64 AAAGGTTCAATATATTCCTAAGTAAAAATAAAAA
11613207 AATTAAATTA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
95 3 0.04
96 71 0.84
97 11 0.13
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.32
Consensus pattern (97 bp):
TTAAGAATATGTTGGGCTGAGTAACCGAGGTGAGGTGCTTGGCTATCATCTCTCTTCGCGTCAAA
AGGTTCAATATATTCCTAAGTAAAAATAAAAA
Found at i:11613883 original size:10 final size:10
Alignment explanation
Indices: 11613868--11613914 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
11613858 AATTTAGGAT
11613868 TTATTTTTAA
1 TTATTTTTAA
11613878 TTA-TTTTAA
1 TTATTTTTAA
* *
11613887 TTATCTTTAT
1 TTATTTTTAA
* *
11613897 TTATTTGTAT
1 TTATTTTTAA
11613907 TTATTTTT
1 TTATTTTT
11613915 TAGAATTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
9 9 0.29
10 22 0.71
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (10 bp):
TTATTTTTAA
Found at i:11613890 original size:19 final size:20
Alignment explanation
Indices: 11613868--11613914 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
11613858 AATTTAGGAT
11613868 TTATTTTTAATTATTT-TAA
1 TTATTTTTAATTATTTGTAA
* * *
11613887 TTATCTTTATTTATTTGTAT
1 TTATTTTTAATTATTTGTAA
11613907 TTATTTTT
1 TTATTTTT
11613915 TAGAATTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (20 bp):
TTATTTTTAATTATTTGTAA
Found at i:11618656 original size:43 final size:43
Alignment explanation
Indices: 11618536--11618694 Score: 166
Period size: 43 Copynumber: 3.7 Consensus size: 43
11618526 AGCTCGTACA
* *
11618536 ATGCCAATGTCCCAGAGGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAAATA-CG
* * *
11618579 ATGCCACTGTCTCAAACAG-GGTCTTACACG-AAATCAAATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAATCAAATACG
* *
11618621 CTGCCAATGTCCCAGACGTAGTCTTACACGTAAATCATAAGTA-G
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCA-AA-TACG
*
11618665 ATGCCAACT-TCCCAGATGTGGTCTTACACG
1 ATGCCAA-TGTCCCAGACGTGGTCTTACACG
11618695 ATAACACATT
Statistics
Matches: 96, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 25 0.26
43 38 0.40
44 29 0.30
45 3 0.03
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAAATACG
Found at i:11621154 original size:22 final size:21
Alignment explanation
Indices: 11621114--11621155 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
11621104 TAAAAGGTTA
11621114 ATAACAATTAATATATATTAT
1 ATAACAATTAATATATATTAT
11621135 ATAA-AATATAATAATATATTA
1 ATAACAAT-TAAT-ATATATTA
11621156 GTTGTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.16
21 8 0.42
22 8 0.42
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
ATAACAATTAATATATATTAT
Found at i:11621244 original size:26 final size:26
Alignment explanation
Indices: 11621212--11621261 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
11621202 GCTATTTTAA
*
11621212 AATATTTATAGAAAAA-AGCTAATTTT
1 AATATTTACA-AAAAATAGCTAATTTT
11621238 AATATTTACAAAAAATAGCTAATT
1 AATATTTACAAAAAATAGCTAATT
11621262 ATTGCAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (26 bp):
AATATTTACAAAAAATAGCTAATTTT
Found at i:11628961 original size:13 final size:13
Alignment explanation
Indices: 11628943--11628979 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
11628933 ATTTTCTATT
11628943 GCCTCACATTGAA
1 GCCTCACATTGAA
*
11628956 GCCTCACAATGAA
1 GCCTCACATTGAA
*
11628969 GCCGCACATTG
1 GCCTCACATTG
11628980 CAAATCCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.30, C:0.32, G:0.19, T:0.19
Consensus pattern (13 bp):
GCCTCACATTGAA
Found at i:11631612 original size:14 final size:15
Alignment explanation
Indices: 11631573--11631618 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 15
11631563 TTTTTACAAA
11631573 TTTAG-AATTTAATT
1 TTTAGAAATTTAATT
* * *
11631587 TTTA-TATTTTTATT
1 TTTAGAAATTTAATT
11631601 TTTAGAAATTTAATT
1 TTTAGAAATTTAATT
11631616 TTT
1 TTT
11631619 TATTTTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (15 bp):
TTTAGAAATTTAATT
Found at i:11631612 original size:22 final size:22
Alignment explanation
Indices: 11631593--11631635 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
11631583 AATTTTTATA
11631593 TTTTTA-TTTTTAGAAATTTAAT
1 TTTTTATTTTTTA-AAATTTAAT
11631615 TTTTTATTTTTTAAAATTTAA
1 TTTTTATTTTTTAAAATTTAA
11631636 AATTTAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTTTATTTTTTAAAATTTAAT
Found at i:11631638 original size:29 final size:29
Alignment explanation
Indices: 11631560--11631646 Score: 97
Period size: 29 Copynumber: 2.9 Consensus size: 29
11631550 AAAAGCTACG
*
11631560 TATTTTTTACAAATTTAGAATTTAA-TTTT
1 TATTTTTTA-AAATTTAAAATTTAATTTTT
**
11631589 TATATTTTT-ATTTTTAGAAATTTAATTTTT
1 TAT-TTTTTAAAATTTA-AAATTTAATTTTT
11631619 TATTTTTTAAAATTTAAAATTTAGATTT
1 TATTTTTTAAAATTTAAAATTTA-ATTT
11631647 AATTGTAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
28 5 0.10
29 22 0.46
30 21 0.44
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (29 bp):
TATTTTTTAAAATTTAAAATTTAATTTTT
Found at i:11631757 original size:14 final size:15
Alignment explanation
Indices: 11631727--11631759 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
11631717 AATAAAGTTA
11631727 TAATAAATATAAATT
1 TAATAAATATAAATT
*
11631742 TAATAAA-ATAATTT
1 TAATAAATATAAATT
11631756 TAAT
1 TAAT
11631760 TGTGCCAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAATAAATATAAATT
Found at i:11636679 original size:2 final size:2
Alignment explanation
Indices: 11636674--11636757 Score: 70
Period size: 2 Copynumber: 44.5 Consensus size: 2
11636664 TTTTAAACAT
* * * * *
11636674 TA TA TA TA TA TA TA T- TT TA TG TA TA T- TA TG TC TA TA T- TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
11636713 TA -A TA TA T- TA TG TA TT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11636753 TA TA T
1 TA TA T
11636758 CATGTACATA
Statistics
Matches: 66, Mismatches: 11, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
1 5 0.08
2 61 0.92
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (2 bp):
TA
Found at i:11636770 original size:69 final size:69
Alignment explanation
Indices: 11636674--11636802 Score: 172
Period size: 67 Copynumber: 1.9 Consensus size: 69
11636664 TTTTAAACAT
* * * * * *
11636674 TATATATATATATATTTTATGTATATTATGTCTATA-TTTTAATA-TATTATGTATTTATATATA
1 TATATATATATATATATCATGTATATTATGTATATACTTTGAATATTATCATATATTTATATATA
11636737 TATA
66 TATA
11636741 TATATATATATATATATCATGTACATATTATGTATATACTTTGAATATTATCATATATTTAT
1 TATATATATATATATATCATGT--ATATTATGTATATACTTTGAATATTATCATATATTTAT
11636803 TTTCAATATA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
67 20 0.38
69 13 0.25
70 7 0.13
71 12 0.23
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.53
Consensus pattern (69 bp):
TATATATATATATATATCATGTATATTATGTATATACTTTGAATATTATCATATATTTATATATA
TATA
Found at i:11636945 original size:2 final size:2
Alignment explanation
Indices: 11636938--11636979 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
11636928 ATACCAACAA
*
11636938 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11636980 GTTTTAGCTC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11649383 original size:22 final size:24
Alignment explanation
Indices: 11649339--11649383 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
11649329 TAGGAGCATT
11649339 TAATTCATTTCGATCATAGCATCC
1 TAATTCATTTCGATCATAGCATCC
11649363 TAATT-ATTT-GA-CATAAGCATC
1 TAATTCATTTCGATCAT-AGCATC
11649384 ACATTTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 3 0.15
22 8 0.40
23 4 0.20
24 5 0.25
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (24 bp):
TAATTCATTTCGATCATAGCATCC
Found at i:11649420 original size:64 final size:64
Alignment explanation
Indices: 11649319--11649446 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
11649309 ATATTCATAA
*
11649319 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
11649383 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
11649447 AGATACATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTAATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:11649632 original size:86 final size:86
Alignment explanation
Indices: 11649526--11649729 Score: 338
Period size: 86 Copynumber: 2.4 Consensus size: 86
11649516 AGTCTTATCT
* *
11649526 CCCTAAGTAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCC-TAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCTTAAGCAGTAAGGAAACAGA
**
11649590 TCGAAGGTGATGGGCCTTAAAC
66 TCGAAGGCAATGGGCC-TAAAC
*
11649612 CCCTAAGCAGCAGGGTAACAGGCTAAATTTACAGATCTTAACCCCTTAAGCAGTAAGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCTTAAGCAGTAAGGAAACAGA
11649677 TCGAAGGCAATGGGCCTAAAC
66 TCGAAGGCAATGGGCCTAAAC
*
11649698 CCCTAAGCAGTAGGGTAACAGGCTGAATTTAC
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTAC
11649730 TATCCTATCT
Statistics
Matches: 110, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
86 78 0.71
87 32 0.29
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (86 bp):
CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCTTAAGCAGTAAGGAAACAGA
TCGAAGGCAATGGGCCTAAAC
Found at i:11649675 original size:43 final size:42
Alignment explanation
Indices: 11649526--11649675 Score: 147
Period size: 43 Copynumber: 3.5 Consensus size: 42
11649516 AGTCTTATCT
* *
11649526 CCCTAAGTAGTAGGGTAACAGGCTAAATTTACAGATCTTAAC
1 CCCTAAGCAGTAGGGAAACAGGCTAAATTTACAGATCTTAAC
* * ** * ** **
11649568 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGGCCTTAAAC
1 CCCTAAGCAGTAGGGAAACAG-GCTAAATTTACAGATCTT-AAC
* *
11649612 CCCTAAGCAGCAGGGTAACAGGCTAAATTTACAGATCTTAAC
1 CCCTAAGCAGTAGGGAAACAGGCTAAATTTACAGATCTTAAC
*
11649654 CCCTTAAGCAGTAAGGAAACAG
1 CCC-TAAGCAGTAGGGAAACAG
11649676 ATCGAAGGCA
Statistics
Matches: 80, Mismatches: 25, Indels: 5
0.73 0.23 0.05
Matches are distributed among these distances:
42 25 0.31
43 33 0.41
44 22 0.28
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGAAACAGGCTAAATTTACAGATCTTAAC
Found at i:11651533 original size:2 final size:2
Alignment explanation
Indices: 11651526--11651638 Score: 92
Period size: 2 Copynumber: 59.0 Consensus size: 2
11651516 TTTTAAACAT
* *
11651526 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
11651568 T- TA TG TC TA TA T- TT TA -A TA TA T- TA TG TA TA TT TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
11651606 TA TA TA TA TA TA TA TG TA CA TA T- TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11651639 CTTTTAATAT
Statistics
Matches: 88, Mismatches: 18, Indels: 10
0.76 0.16 0.09
Matches are distributed among these distances:
1 5 0.06
2 83 0.94
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (2 bp):
TA
Found at i:11651580 original size:21 final size:21
Alignment explanation
Indices: 11651524--11651662 Score: 112
Period size: 21 Copynumber: 6.8 Consensus size: 21
11651514 CTTTTTAAAC
* *
11651524 ATTATATATATATATATATAT
1 ATTATGTATATATTTATATAT
* *
11651545 ATATATATATATATTTATGTAT
1 AT-TATGTATATATTTATATAT
*
11651567 ATTATGTCTATATTT-TAATAT
1 ATTATGTATATATTTAT-ATAT
11651588 ATTATGTATAT-TTT-TATAT
1 ATTATGTATATATTTATATAT
* * * *
11651607 A-TATATATATATATGTACAT
1 ATTATGTATATATTTATATAT
11651627 ATTATGTATATACTTT-TA-AT
1 ATTATGTATATA-TTTATATAT
*
11651647 ATTAT-CATATATTTAT
1 ATTATGTATATATTTAT
11651663 TTTCAGTATA
Statistics
Matches: 99, Mismatches: 12, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
18 11 0.11
19 13 0.13
20 17 0.17
21 37 0.37
22 21 0.21
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.55
Consensus pattern (21 bp):
ATTATGTATATATTTATATAT
Found at i:11652023 original size:21 final size:22
Alignment explanation
Indices: 11651972--11652024 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 22
11651962 ATATATATAC
* *
11651972 ACTCAGATGAGCTAATATTTCT
1 ACTCAGATGAACTAATATTGCT
11651994 AAACTCAGATGAACTAATATTGCT
1 --ACTCAGATGAACTAATATTGCT
11652018 -CTCAGAT
1 ACTCAGAT
11652025 CCGTCATCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 7 0.26
24 20 0.74
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (22 bp):
ACTCAGATGAACTAATATTGCT
Found at i:11656447 original size:62 final size:62
Alignment explanation
Indices: 11656357--11656497 Score: 198
Period size: 62 Copynumber: 2.3 Consensus size: 62
11656347 ACAAACAATA
*
11656357 AGTTACACAGCCTGGGCACATGCTCGTGTCCCTGGCCGTGT-AGTTTTTATACCTA-AAATAGTG
1 AGTTACACAGCCTGGGCACA-GCTCGTGTCCCTAGCCGTGTGA-TTTTTATA-CTACAAATAGTG
*
11656420 AGTTACACGGCCTGGTGCACA-CTCGTGTCCCTAGCCGTGTGATTTTTATACTACAAATAGTG
1 AGTTACACAGCCTGG-GCACAGCTCGTGTCCCTAGCCGTGTGATTTTTATACTACAAATAGTG
*
11656482 AGTTACACAGCTTGGG
1 AGTTACACAGCCTGGG
11656498 TACACGTCAT
Statistics
Matches: 71, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
61 4 0.06
62 47 0.66
63 15 0.21
64 5 0.07
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (62 bp):
AGTTACACAGCCTGGGCACAGCTCGTGTCCCTAGCCGTGTGATTTTTATACTACAAATAGTG
Found at i:11660010 original size:75 final size:77
Alignment explanation
Indices: 11659877--11660025 Score: 221
Period size: 76 Copynumber: 2.0 Consensus size: 77
11659867 TGGACTTTAT
* *
11659877 TTTTAGTCAATATTGTATTTTTTTATTTTCGAAACAATACACAAATTTGAGTG-TTTTTTGGATT
1 TTTTAGTCAATATTGTATTTTTTTATTTTCGAAACAACACACAAATTTGAATGCTTTTTTGGATT
*
11659941 ATACGAGCATAA
66 ATACAAGCATAA
* * * *
11659953 TTTTAGTCAATATTGTA-TTTTTTATTTTCGAAACAGCATACAAATTTTAATGCTTTTTTGGTTT
1 TTTTAGTCAATATTGTATTTTTTTATTTTCGAAACAACACACAAATTTGAATGCTTTTTTGGATT
11660017 ATACAAGCA
66 ATACAAGCA
11660026 AATGGCATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
75 30 0.46
76 35 0.54
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (77 bp):
TTTTAGTCAATATTGTATTTTTTTATTTTCGAAACAACACACAAATTTGAATGCTTTTTTGGATT
ATACAAGCATAA
Found at i:11663266 original size:30 final size:29
Alignment explanation
Indices: 11663232--11663321 Score: 92
Period size: 30 Copynumber: 3.1 Consensus size: 29
11663222 ATAATTTACA
11663232 AAAATTGAATTAAATCAAAATTTCATGTAT
1 AAAATTGAATTAAATCAAAA-TTCATGTAT
* * *
11663262 AAAATTGCATAAAATCAAAGTTCATGTAT
1 AAAATTGAATTAAATCAAAATTCATGTAT
* * * *
11663291 ATAGTTGCAATTAAACCATAATT-ATGTAT
1 AAAATTG-AATTAAATCAAAATTCATGTAT
11663320 AA
1 AA
11663322 TTTTGATAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
29 21 0.44
30 27 0.56
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (29 bp):
AAAATTGAATTAAATCAAAATTCATGTAT
Found at i:11663879 original size:2 final size:2
Alignment explanation
Indices: 11663872--11663906 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
11663862 ATCAAATAAT
11663872 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11663907 TTCAATATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11665336 original size:11 final size:11
Alignment explanation
Indices: 11665320--11665349 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
11665310 TTGCACAGGA
11665320 TTAAATTATAG
1 TTAAATTATAG
11665331 TTAAATTATAG
1 TTAAATTATAG
11665342 TTAAATTA
1 TTAAATTA
11665350 CTGAAGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (11 bp):
TTAAATTATAG
Found at i:11666271 original size:86 final size:84
Alignment explanation
Indices: 11666169--11666379 Score: 255
Period size: 86 Copynumber: 2.5 Consensus size: 84
11666159 TTAAGGGTGT
* * * * *
11666169 AAAAA-GCCCTCGAACTTTTTTAAAATAAGCAATTAAGCTCTTT-TTTTTGCACTTAATTGAGCA
1 AAAAAGGCCCTCAAACTTTTTCAAAA-AATCAATTAAGCCCTTTATTTTT-CACTCAATTGAGCA
*
11666232 CTTAAACTTTTTAAAATGCATC
64 CTTAAAC-TTTCAAAATGCATC
* * *
11666254 AAAAAGGCCCTCAAACTTATTCAAAAAAATCAATTAAGCCCCTTTATTTTTCACTCAATTGGGTA
1 AAAAAGGCCCTCAAACTTTTTC-AAAAAATCAATTAAG-CCCTTTATTTTTCACTCAATTGAGCA
11666319 CTTAAACTTTCAAAATGCATC
64 CTTAAACTTTCAAAATGCATC
* * *
11666340 AAAAAGACCTTCAAAATTTTTCAAAAAATCAATTAAGCCC
1 AAAAAGGCCCTCAAACTTTTTCAAAAAATCAATTAAGCCC
11666380 CCGCTTTTAT
Statistics
Matches: 109, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
84 3 0.03
85 20 0.18
86 54 0.50
87 27 0.25
88 5 0.05
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (84 bp):
AAAAAGGCCCTCAAACTTTTTCAAAAAATCAATTAAGCCCTTTATTTTTCACTCAATTGAGCACT
TAAACTTTCAAAATGCATC
Found at i:11666457 original size:17 final size:18
Alignment explanation
Indices: 11666425--11666460 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
11666415 TAATAAATAA
11666425 TAAATTTTAGAAAAATTAT
1 TAAATTTTA-AAAAATTAT
11666444 TAAATTTT-AAAAATTAT
1 TAAATTTTAAAAAATTAT
11666461 AATTTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
TAAATTTTAAAAAATTAT
Found at i:11666612 original size:10 final size:9
Alignment explanation
Indices: 11666597--11666644 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
11666587 ACATGTGGCG
11666597 AAAAATGATA
1 AAAAAT-ATA
11666607 AAAAATA-A
1 AAAAATATA
11666615 AAATAA-ATA
1 AAA-AATATA
*
11666624 AAAATTATA
1 AAAAATATA
11666633 AAAAATATA
1 AAAAATATA
11666642 AAA
1 AAA
11666645 TGCTTCTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
8 6 0.18
9 21 0.64
10 6 0.18
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (9 bp):
AAAAATATA
Found at i:11666789 original size:17 final size:16
Alignment explanation
Indices: 11666767--11666807 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
11666757 AAATTCTAAA
11666767 AATTTTTATATTTTTCT
1 AATTTTTATATTTTT-T
11666784 AATTTTTA-ATTTTTT
1 AATTTTTATATTTTTT
*
11666799 ATTTTTTAT
1 AATTTTTAT
11666808 TAAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (16 bp):
AATTTTTATATTTTTT
Found at i:11667021 original size:89 final size:90
Alignment explanation
Indices: 11666876--11667059 Score: 262
Period size: 89 Copynumber: 2.0 Consensus size: 90
11666866 AATTTTTAAT
* * * *
11666876 AAAAGCAGGGGCTTAATTGCTTTTTTTTGAAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAA
1 AAAAGCAGGGGCTTAATTAC-TTTTTTTGAAAAAAGTTTGAGGGCCTTTTTAATGCATTTTAAAA
*
11666941 GTTTAAGTACCCAATTTAGTGCAAAA
65 GTTTAAGTACCCAATTGAGTGCAAAA
* * *
11666967 AAAAGTAGGGGCTTAATTAC-TTTTTTGGAAAAGGTTTGAGGGCCTTTTTAATGCATTTTAAAAG
1 AAAAGCAGGGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGCCTTTTTAATGCATTTTAAAAG
* *
11667031 TTTAAGTGCTCAATTGAGTGCAAAA
66 TTTAAGTACCCAATTGAGTGCAAAA
11667056 AAAA
1 AAAA
11667060 AAAGGAAGGA
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
89 65 0.78
91 18 0.22
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (90 bp):
AAAAGCAGGGGCTTAATTACTTTTTTTGAAAAAAGTTTGAGGGCCTTTTTAATGCATTTTAAAAG
TTTAAGTACCCAATTGAGTGCAAAA
Found at i:11669724 original size:27 final size:27
Alignment explanation
Indices: 11669662--11669728 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 27
11669652 ATTAATATCC
*
11669662 AAAATAAAAT-AAATAATTAAGTAATA
1 AAAATAAAATAAAATAATAAAGTAATA
11669688 AATAATAAAATAAAATAATAAAG-AA-A
1 AA-AATAAAATAAAATAATAAAGTAATA
*
11669714 GAAAATAAAAAAAAA
1 -AAAATAAAATAAAA
11669729 ATTTGGGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
26 14 0.39
27 12 0.33
28 10 0.28
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.19
Consensus pattern (27 bp):
AAAATAAAATAAAATAATAAAGTAATA
Found at i:11676374 original size:30 final size:30
Alignment explanation
Indices: 11676340--11676400 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
11676330 GAGACACGGT
11676340 CGTGTATCTCAGCCGGGTGGATGACATGGC
1 CGTGTATCTCAGCCGGGTGGATGACATGGC
* *
11676370 CGTGTGTCTCAGCCGTGTGGATGACATGGC
1 CGTGTATCTCAGCCGGGTGGATGACATGGC
11676400 C
1 C
11676401 TAGCACACGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.15, C:0.25, G:0.36, T:0.25
Consensus pattern (30 bp):
CGTGTATCTCAGCCGGGTGGATGACATGGC
Found at i:11677273 original size:73 final size:73
Alignment explanation
Indices: 11677179--11677324 Score: 229
Period size: 73 Copynumber: 2.0 Consensus size: 73
11677169 GTGTCTCAGC
* * * ** *
11677179 TGTGTGCACACATGGTTATGTTGCACGCCCGTATGTCCTCTGGGGTACCTTACGATTTTAAGTCA
1 TGTGTGCACACACGGTCATGTTGCACGCCCGTATGTCCCCTGGAATACCTTACAATTTTAAGTCA
11677244 GTCTTGAG
66 GTCTTGAG
*
11677252 TGTGTGCACACACGGTCATGTTGCACGCCCGTGTGTCCCCTGGAATACCTTACAATTTTAAGTCA
1 TGTGTGCACACACGGTCATGTTGCACGCCCGTATGTCCCCTGGAATACCTTACAATTTTAAGTCA
11677317 GTCTTGAG
66 GTCTTGAG
11677325 CATGACCAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (73 bp):
TGTGTGCACACACGGTCATGTTGCACGCCCGTATGTCCCCTGGAATACCTTACAATTTTAAGTCA
GTCTTGAG
Found at i:11677647 original size:13 final size:13
Alignment explanation
Indices: 11677629--11677657 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
11677619 GGTTATTTAT
11677629 TAAACTAATTAAC
1 TAAACTAATTAAC
11677642 TAAACTAATTAAC
1 TAAACTAATTAAC
11677655 TAA
1 TAA
11677658 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:11680529 original size:6 final size:6
Alignment explanation
Indices: 11680520--11680552 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
11680510 AATAAAATTG
*
11680520 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
11680553 GATAGGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:11684694 original size:13 final size:13
Alignment explanation
Indices: 11684676--11684704 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
11684666 GGTTGTTTAT
11684676 TAAACTAATTAAC
1 TAAACTAATTAAC
11684689 TAAACTAATTAAC
1 TAAACTAATTAAC
11684702 TAA
1 TAA
11684705 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:11687590 original size:14 final size:15
Alignment explanation
Indices: 11687571--11687599 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
11687561 TTTACAAACC
11687571 AAAAT-ATCATAAAT
1 AAAATAATCATAAAT
11687585 AAAATAATCATAAAT
1 AAAATAATCATAAAT
11687600 CAATTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAATCATAAAT
Found at i:11689628 original size:20 final size:22
Alignment explanation
Indices: 11689591--11689630 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
11689581 AAAAAAAAAA
*
11689591 GAAAAAAAGAGTATATGTACTC
1 GAAAAAAAGAGTAGATGTACTC
11689613 GAAAAAAA-A-TAGATGTAC
1 GAAAAAAAGAGTAGATGTAC
11689631 AAGGAGCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 1 0.06
22 8 0.47
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.20
Consensus pattern (22 bp):
GAAAAAAAGAGTAGATGTACTC
Done.