Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 44 of 328
Found at i:12798299 original size:15 final size:15
Alignment explanation
Indices: 12798281--12798315 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
12798271 TTTGGGGTAA
12798281 TTTTTCTTT-TTCTTT
1 TTTTTCTTTATT-TTT
12798296 TTTTTCTTTATTTTT
1 TTTTTCTTTATTTTT
12798311 TTTTT
1 TTTTT
12798316 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTATTTTT
Found at i:12801341 original size:31 final size:31
Alignment explanation
Indices: 12801303--12801366 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
12801293 CCTTTTCATA
12801303 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
12801334 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
12801365 TT
1 TT
12801367 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:12801609 original size:24 final size:24
Alignment explanation
Indices: 12801558--12801676 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
12801548 GCTTTATCAT
*
12801558 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
12801583 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
12801607 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
12801630 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
12801654 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
12801677 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:12801637 original size:47 final size:48
Alignment explanation
Indices: 12801558--12801676 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
12801548 GCTTTATCAT
*
12801558 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
12801607 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
12801654 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
12801677 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:12801752 original size:20 final size:20
Alignment explanation
Indices: 12801727--12801786 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
12801717 TATGATTACC
12801727 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
12801747 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
12801767 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
12801787 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:12801757 original size:11 final size:11
Alignment explanation
Indices: 12801727--12801781 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
12801717 TATGATTACC
12801727 TCATGTGCATA
1 TCATGTGCATA
*
12801738 TCA--TACATA
1 TCATGTGCATA
12801747 TCATGTGCATA
1 TCATGTGCATA
* *
12801758 TCA--TACATT
1 TCATGTGCATA
12801767 TCATGTGCATA
1 TCATGTGCATA
12801778 TCAT
1 TCAT
12801782 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:12801861 original size:25 final size:25
Alignment explanation
Indices: 12801829--12801876 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
12801819 ATACATAAAC
* * *
12801829 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
12801854 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
12801877 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:12809418 original size:31 final size:31
Alignment explanation
Indices: 12809380--12809443 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
12809370 CCTTTTCATA
12809380 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
12809411 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
12809442 TT
1 TT
12809444 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:12809686 original size:24 final size:24
Alignment explanation
Indices: 12809635--12809753 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
12809625 GCTTTATCAT
*
12809635 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
12809660 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
12809684 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
12809707 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
12809731 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
12809754 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:12809714 original size:47 final size:48
Alignment explanation
Indices: 12809635--12809753 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
12809625 GCTTTATCAT
*
12809635 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
12809684 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
12809731 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
12809754 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:12809829 original size:20 final size:20
Alignment explanation
Indices: 12809804--12809863 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
12809794 TATGATTACC
12809804 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
12809824 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
12809844 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
12809864 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:12809834 original size:11 final size:11
Alignment explanation
Indices: 12809804--12809858 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
12809794 TATGATTACC
12809804 TCATGTGCATA
1 TCATGTGCATA
*
12809815 TCA--TACATA
1 TCATGTGCATA
12809824 TCATGTGCATA
1 TCATGTGCATA
* *
12809835 TCA--TACATT
1 TCATGTGCATA
12809844 TCATGTGCATA
1 TCATGTGCATA
12809855 TCAT
1 TCAT
12809859 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:12809938 original size:25 final size:25
Alignment explanation
Indices: 12809906--12809953 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
12809896 ATACATAAAC
* * *
12809906 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
12809931 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
12809954 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:12812495 original size:9 final size:9
Alignment explanation
Indices: 12812481--12812535 Score: 92
Period size: 9 Copynumber: 6.1 Consensus size: 9
12812471 TATAGTTTGA
12812481 TATTCGAAT
1 TATTCGAAT
12812490 TATTCGAAT
1 TATTCGAAT
*
12812499 TATTCGAGT
1 TATTCGAAT
12812508 TATTCGAAT
1 TATTCGAAT
*
12812517 TATTCGAGT
1 TATTCGAAT
12812526 TATTCGAAT
1 TATTCGAAT
12812535 T
1 T
12812536 CGAAAACTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (9 bp):
TATTCGAAT
Found at i:12820919 original size:20 final size:18
Alignment explanation
Indices: 12820885--12820925 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
12820875 ATTTGATTAT
*
12820885 TAAAATATTATTTTTTAA
1 TAAAATATTATTTTTAAA
12820903 TAAAATATTAAATTTTTAAA
1 TAAAATATT--ATTTTTAAA
12820923 TAA
1 TAA
12820926 GGTAGTCTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
20 11 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAAATATTATTTTTAAA
Found at i:12820920 original size:19 final size:18
Alignment explanation
Indices: 12820885--12820921 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
12820875 ATTTGATTAT
*
12820885 TAAAATATTATTTTTTAA
1 TAAAATATTAATTTTTAA
12820903 TAAAATATTAAATTTTTAA
1 TAAAATATT-AATTTTTAA
12820922 ATAAGGTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAAAATATTAATTTTTAA
Found at i:12826963 original size:27 final size:27
Alignment explanation
Indices: 12826931--12826987 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
12826921 GAGAAAGAGG
12826931 AAGATAGAGTGTTAAAGTTGAGTTCTT
1 AAGATAGAGTGTTAAAGTTGAGTTCTT
12826958 AAGATAGAGTGTTAAAGTTGAGTTCTT
1 AAGATAGAGTGTTAAAGTTGAGTTCTT
12826985 AAG
1 AAG
12826988 GTTGCTAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.35
Consensus pattern (27 bp):
AAGATAGAGTGTTAAAGTTGAGTTCTT
Found at i:12826986 original size:14 final size:14
Alignment explanation
Indices: 12826942--12826991 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
12826932 AGATAGAGTG
12826942 TTAAAGTTGAGTTC
1 TTAAAGTTGAGTTC
* *
12826956 TT-AAGATAGAG-TG
1 TTAAAG-TTGAGTTC
12826969 TTAAAGTTGAGTTC
1 TTAAAGTTGAGTTC
*
12826983 TTAAGGTTG
1 TTAAAGTTG
12826992 CTAGAGGGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.30, C:0.04, G:0.26, T:0.40
Consensus pattern (14 bp):
TTAAAGTTGAGTTC
Found at i:12828567 original size:18 final size:19
Alignment explanation
Indices: 12828524--12828569 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
12828514 TAGCGTATAG
*
12828524 GTAATTATATATAAAAAAT
1 GTAATAATATATAAAAAAT
*
12828543 GTTATAATA-ATAATAAAA-
1 GTAATAATATATAA-AAAAT
12828561 GTAATAATA
1 GTAATAATA
12828570 CAATAGTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.35
Consensus pattern (19 bp):
GTAATAATATATAAAAAAT
Found at i:12828703 original size:57 final size:56
Alignment explanation
Indices: 12828640--12828776 Score: 134
Period size: 57 Copynumber: 2.4 Consensus size: 56
12828630 AAAAAATTTA
* * * * *
12828640 ATAATATCATATAAATATATATTA-AAAATAAATATATAATAATATTAAAGCATATGC
1 ATAATATCATA-AAATATATATAACAAAATAAACACATAAT-ATATTAAAACATATAC
* * * *
12828697 ATAATAT-ATACATAATATACAAAACAAAATATACACATAATATATTAAAATATATAC
1 ATAATATCATA-A-AATATATATAACAAAATAAACACATAATATATTAAAACATATAC
12828754 ATAATATACATAAAATATATATA
1 ATAATAT-CATAAAATATATATA
12828777 TAATATTTAA
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
56 4 0.06
57 43 0.67
58 14 0.22
59 3 0.05
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.33
Consensus pattern (56 bp):
ATAATATCATAAAATATATATAACAAAATAAACACATAATATATTAAAACATATAC
Found at i:12828710 original size:11 final size:11
Alignment explanation
Indices: 12828691--12828782 Score: 62
Period size: 11 Copynumber: 8.2 Consensus size: 11
12828681 ATATTAAAGC
*
12828691 ATATGCATAAT
1 ATATACATAAT
12828702 ATATACATAAT
1 ATATACATAAT
* *
12828713 ATACAAAACAAAAT
1 AT---ATACATAAT
*
12828727 ATACACATAAT
1 ATATACATAAT
12828738 ATATTA-A-AAT
1 ATA-TACATAAT
12828748 ATATACATAAT
1 ATATACATAAT
* * *
12828759 ATACATAAAAT
1 ATATACATAAT
*
12828770 ATATATATAAT
1 ATATACATAAT
12828781 AT
1 AT
12828783 TTAAAAAGAA
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
9 2 0.03
10 7 0.11
11 45 0.70
12 1 0.02
14 9 0.14
ACGTcount: A:0.58, C:0.09, G:0.01, T:0.33
Consensus pattern (11 bp):
ATATACATAAT
Found at i:12828748 original size:21 final size:21
Alignment explanation
Indices: 12828722--12828788 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
12828712 TATACAAAAC
*
12828722 AAAATATACACATAATATATT
1 AAAATATATACATAATATATT
*
12828743 AAAATATATACATAATATACAT
1 AAAATATATACATAATATA-TT
*
12828765 AAAATATATATATAATAT-TT
1 AAAATATATACATAATATATT
12828785 AAAA
1 AAAA
12828789 AGAACAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
20 5 0.12
21 18 0.44
22 18 0.44
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAATATATACATAATATATT
Found at i:12831594 original size:7 final size:7
Alignment explanation
Indices: 12831578--12831616 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
12831568 TGATAATGCC
*
12831578 TGATAGA
1 TGATAAA
12831585 TGATAAA
1 TGATAAA
12831592 TGATAAA
1 TGATAAA
*
12831599 TGATGAA
1 TGATAAA
*
12831606 TGATGAA
1 TGATAAA
12831613 TGAT
1 TGAT
12831617 GCGAATGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (7 bp):
TGATAAA
Found at i:12832795 original size:16 final size:17
Alignment explanation
Indices: 12832764--12832796 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
12832754 TTCATAAGTA
*
12832764 TATATCAATCATTTCAT
1 TATATCAATAATTTCAT
12832781 TATATCAA-AATTTCAT
1 TATATCAATAATTTCAT
12832797 GCTCTATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.45
Consensus pattern (17 bp):
TATATCAATAATTTCAT
Found at i:12833152 original size:46 final size:46
Alignment explanation
Indices: 12833077--12833483 Score: 482
Period size: 46 Copynumber: 8.9 Consensus size: 46
12833067 TTATCTTTGA
* * * * * * *
12833077 CATGATGCCATAGTGTCTTTCGACTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* *** *
12833123 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
* ** ** * **
12833169 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* *
12833214 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* * *
12833260 CCTGTTGCCATGGTATCTTTTAACCATGGTCATACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
*
12833306 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
* *
12833352 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACATA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
*
12833398 CATGTTG-CATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
*
12833443 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
12833484 CATTTTAGAA
Statistics
Matches: 316, Mismatches: 38, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
45 85 0.27
46 228 0.72
47 3 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
Found at i:12833314 original size:137 final size:138
Alignment explanation
Indices: 12833077--12833485 Score: 518
Period size: 137 Copynumber: 3.0 Consensus size: 138
12833067 TTATCTTTGA
* * * * * * * *
12833077 CATGATGCCATAGTGTCTTTCGACTATGGTCTTACT-CATTTTCTGTCAGGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TACATTTTATATCATGTTGCCATGGTATCT
*** * * ** **
12833141 TTCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTATTC
65 TTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
* *
12833206 A-TTCCCGT
130 ATTTCACAT
*
12833214 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTATATCCTGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTATATCATGTTGCCATGGTATCTT
* *
12833279 TTAACCATGGTCATACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
* *
12833344 TTTTATAT
131 TTTCACAT
* * * *
12833352 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCATGTTG-CATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTATATCATGTTGCCATGGTATCTT
* *
12833416 TCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
12833481 TTTCA
131 TTTCA
12833486 TTTTAGAAAG
Statistics
Matches: 236, Mismatches: 34, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
136 1 0.00
137 184 0.78
138 51 0.22
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (138 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTATATCATGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCACAT
Found at i:12833438 original size:183 final size:183
Alignment explanation
Indices: 12833077--12833486 Score: 531
Period size: 183 Copynumber: 2.2 Consensus size: 183
12833067 TTATCTTTGA
* * * * * * * * *
12833077 CATGATGCCATAGTGTCTTTCGACTATGGTCTTACTCATTTTC-TGTCAGGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCATACACA-TTTCATATCATGTTGCCATGGTATCT
*** * *
12833141 TTCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTATTC
65 TTCAACCATGGTCTTACACATTTCATGATACATTGCCATGGTATCTTTCAACCATGGTCTTAATC
* * *
12833206 ATTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTATAT
130 ATTCACATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
* *
12833260 CCTGTTGCCATGGTATCTTTTAACCATGGTCATACACATTTCATATCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCATACACATTTCATATCATGTTGCCATGGTATCTT
* * *
12833325 TCAACCATGGTCTTACACATTTTAT-ATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACAT
66 TCAACCATGGTCTTACACATTTCATGATAC-ATTGCCATGGTATCTTTCAACCATGGTCTTA-AT
*
12833389 -ATTTCATATCATGTTG-CATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
129 CA-TTCACATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
* *
12833443 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCATACACATTTCAT
12833487 TTTAGAAAGC
Statistics
Matches: 196, Mismatches: 27, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
182 6 0.03
183 178 0.91
184 12 0.06
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (183 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCATACACATTTCATATCATGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCATGATACATTGCCATGGTATCTTTCAACCATGGTCTTAATCA
TTCACATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
Found at i:12837949 original size:89 final size:89
Alignment explanation
Indices: 12837829--12838148 Score: 313
Period size: 89 Copynumber: 3.6 Consensus size: 89
12837819 ACTTCGCTGA
* * * * * *
12837829 AACTTCAAGGAGGTAAGAGTTGGTAATTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTT
1 AACTTCAGGGAGATAAGACTTGCT-ACTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTT
***
12837894 TGAGGTCTTTAGTCTACTCCACTGC
65 TGCTATCTTTAGTCTACTCCACTGC
* * *
12837919 AACTTTAGGGAGATAAGACTTGCTACTTCAACCTGCTCTACTACAACTTCAGAGAGATAAGGTTT
1 AACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
* * * *
12837984 GCTATC-TTCGATCTATTCCGCTGT
66 GCTATCTTTAG-TCTACTCCACTGC
* * ** *
12838008 AACTTCAGAGAGAT-AGTA-TCTGTTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGA
1 AACTTCAGGGAGATAAG-ACT-TGCTA-CTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGG
* * *
12838071 TCTGCTATCTTCAGTCTGCTCCACTGC
63 TTTGCTATCTTTAGTCTACTCCACTGC
* * * **
12838098 ACCTTCAGGGAGATAAGACATGCTACTTTAACCTGCTTTACTACAACTTCA
1 AACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTACAACTTCA
12838149 AAGAGACTGT
Statistics
Matches: 183, Mismatches: 40, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
88 6 0.03
89 88 0.48
90 85 0.46
91 4 0.02
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (89 bp):
AACTTCAGGGAGATAAGACTTGCTACTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
GCTATCTTTAGTCTACTCCACTGC
Found at i:12838014 original size:179 final size:177
Alignment explanation
Indices: 12837622--12838154 Score: 519
Period size: 179 Copynumber: 3.0 Consensus size: 177
12837612 AGGGAAAAGT
* *
12837622 GATTTGTAGCTTCGACCTAC-TCTGTTGAAACTTCAAGGAGATAAGAATTGGTAATTTCAATCTG
1 GATTTGTAGCTTCGATCTACTTC-GCTGAAACTTCAAGGAGATAAG-ATTGGTAATTTCAATCTG
* * * * * *
12837686 CTCCACTGCAACTTCAGGGAAATAAGGTTTGTGTATTTTTA-TCCTGCTCTACTACAACTTTAGA
64 CTCCACTGCAACTTCAGGGAGATAAGGTTTGAG-ATCTTTAGT-CTGCTCCACTGCAACTTTAGG
* * * * * ** *
12837750 GAGATAAGGATTATGGT--TTCGATCTGCTCTAATGTAATTTCAG-GTAGAAGA
127 GAGATAA-GACT-TGCTACTTCAACCTGCTCTACTACAACTTCAGAG-AGAAGA
* * *
12837801 GATTTGTAGCTTTGATCTACTTCGCTGAAACTTCAAGGAGGTAAGAGTTGGTAATTTCAACCTGC
1 GATTTGTAGCTTCGATCTACTTCGCTGAAACTTCAAGGAGATAAGA-TTGGTAATTTCAATCTGC
* *
12837866 TCCACTGCAACTTCAGGGAGATAAGGTTTGAGGTCTTTAGTCTACTCCACTGCAACTTTAGGGAG
65 TCCACTGCAACTTCAGGGAGATAAGGTTTGAGATCTTTAGTCTGCTCCACTGCAACTTTAGGGAG
12837931 ATAAGACTTGCTACTTCAACCTGCTCTACTACAACTTCAGAGAGATA-A
130 ATAAGACTTGCTACTTCAACCTGCTCTACTACAACTTCAGAGAGA-AGA
* * * * *
12837979 GGTTTGCTATCTTCGATCTA-TTCCGCTGTAACTTC-AGAGAGAT-AGTATCT-GTTATCTTCAG
1 GATTTG-TAGCTTCGATCTACTT-CGCTGAAACTTCAAG-GAGATAAG-AT-TGGTAAT-TTCAA
* * * ** * * *
12838040 TCTGCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGTCTGCTCCACTGCACCTTCA
60 TCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGAGATCTTTAGTCTGCTCCACTGCAACTTTA
* * * *
12838105 GGGAGATAAGACATGCTACTTTAACCTGCTTTACTACAACTTCAAAGAGA
125 GGGAGATAAGACTTGCTACTTCAACCTGCTCTACTACAACTTCAGAGAGA
12838155 CTGTCTTCAG
Statistics
Matches: 298, Mismatches: 43, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
176 3 0.01
177 3 0.01
178 70 0.23
179 220 0.74
180 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (177 bp):
GATTTGTAGCTTCGATCTACTTCGCTGAAACTTCAAGGAGATAAGATTGGTAATTTCAATCTGCT
CCACTGCAACTTCAGGGAGATAAGGTTTGAGATCTTTAGTCTGCTCCACTGCAACTTTAGGGAGA
TAAGACTTGCTACTTCAACCTGCTCTACTACAACTTCAGAGAGAAGA
Found at i:12838115 original size:45 final size:45
Alignment explanation
Indices: 12837862--12838115 Score: 246
Period size: 45 Copynumber: 5.7 Consensus size: 45
12837852 TAATTTCAAC
* * *** *
12837862 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGAGGTCTTTAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAGT
* * **
12837907 CTACTCCACTGCAACTTTAGGGAGATAAGA-CTTGCTA-CTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAGT
* * * * *
12837951 CTGCTCTACTACAACTTCAGAGAGATAAGGTTTGCTATCTTC-GAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAG-T
** * * * *
12837996 CTATTCCGCTGTAACTTCAGAGAGAT-AGTATCTGTTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAG-ATCTGCTATCTTCAGT
*
12838041 CTGCTCCACTACAACTTCAGGGAGATAAGATCTGCTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAGT
*
12838086 CTGCTCCACTGCACCTTCAGGGAGATAAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA
12838116 CATGCTACTT
Statistics
Matches: 165, Mismatches: 37, Indels: 14
0.76 0.17 0.06
Matches are distributed among these distances:
44 35 0.21
45 127 0.77
46 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAGT
Found at i:12838332 original size:5 final size:5
Alignment explanation
Indices: 12838322--12838360 Score: 62
Period size: 5 Copynumber: 7.8 Consensus size: 5
12838312 CTAATTTAAA
12838322 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA- ATAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT AAAA
12838361 ACAAAAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 1 0.03
5 30 0.94
6 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:12838366 original size:15 final size:14
Alignment explanation
Indices: 12838319--12838366 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
12838309 TTACTAATTT
*
12838319 AAAA-AAATAAAAT
1 AAAATAAATAAAAA
12838332 AAAATAAAATAAAATA
1 AAAAT-AAATAAAA-A
12838348 AAAATAAATAAAAA
1 AAAATAAATAAAAA
12838362 CAAAA
1 -AAAA
12838367 ACAAAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 4 0.13
14 1 0.03
15 20 0.67
16 5 0.17
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAATAAATAAAAA
Found at i:12840254 original size:26 final size:26
Alignment explanation
Indices: 12840211--12840260 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
12840201 TGGATGACTC
*
12840211 TCTACCTCGCATCGCCCAACTGGTTT
1 TCTACCTCGCATCACCCAACTGGTTT
* *
12840237 TCTACCTTGTATCACCCAACTGGT
1 TCTACCTCGCATCACCCAACTGGT
12840261 AGCATCTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.36, G:0.14, T:0.32
Consensus pattern (26 bp):
TCTACCTCGCATCACCCAACTGGTTT
Found at i:12844767 original size:29 final size:29
Alignment explanation
Indices: 12844723--12844803 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
12844713 GAAGAGGTGG
**
12844723 AGAACTTGTTTGTTGA-ATATTCGCGATGA
1 AGAACTTGTTCATTGAGA-ATTCGCGATGA
*
12844752 AGAACTTGTTCATTGAGAGTTCGCGATGA
1 AGAACTTGTTCATTGAGAATTCGCGATGA
*
12844781 AGAACTTGTTCATTGATAATTCG
1 AGAACTTGTTCATTGAGAATTCG
12844804 TGTCAAGGTG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 45 0.98
30 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.36
Consensus pattern (29 bp):
AGAACTTGTTCATTGAGAATTCGCGATGA
Found at i:12845141 original size:5 final size:5
Alignment explanation
Indices: 12845131--12845159 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
12845121 TCTGTGTGTT
12845131 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
12845160 CACAAGGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:12847149 original size:2 final size:2
Alignment explanation
Indices: 12847142--12847194 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
12847132 ATCAGTAATC
12847142 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12847184 TA TA TA TA TA T
1 TA TA TA TA TA T
12847195 GAATAGAATT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:12852581 original size:12 final size:12
Alignment explanation
Indices: 12852566--12852590 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12852556 ATTTATAATT
12852566 TTATTTGTTTAA
1 TTATTTGTTTAA
12852578 TTATTTGTTTAA
1 TTATTTGTTTAA
12852590 T
1 T
12852591 CATACTTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTATTTGTTTAA
Found at i:12854722 original size:88 final size:88
Alignment explanation
Indices: 12854556--12854726 Score: 227
Period size: 88 Copynumber: 1.9 Consensus size: 88
12854546 TCAATAACGT
* * * * * * *
12854556 TCAAGTTTAAGAGTTAATTTAGACAAATAATAAATGTTCAAGTCTTAATATGGAAATAATTATTA
1 TCAAGTTTAAGAGTTAATTTAGACAAACAAAAAAGGTTCAAGCCTCAATATGAAAATAATTATCA
* *
12854621 AGTTAAGGAATTAACTTGGAAAG
66 AATTAAAGAATTAACTTGGAAAG
* *
12854644 TCAAGTTTAAGAGTTAATTTGGACAAACAAAAAAGGTTCAAGCCTCAATGTGAAAATAATTATCA
1 TCAAGTTTAAGAGTTAATTTAGACAAACAAAAAAGGTTCAAGCCTCAATATGAAAATAATTATCA
12854709 AATTAAA-AGATTAACTTG
66 AATTAAAGA-ATTAACTTG
12854727 AAAAAAAAGT
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
87 1 0.01
88 70 0.99
ACGTcount: A:0.45, C:0.08, G:0.15, T:0.32
Consensus pattern (88 bp):
TCAAGTTTAAGAGTTAATTTAGACAAACAAAAAAGGTTCAAGCCTCAATATGAAAATAATTATCA
AATTAAAGAATTAACTTGGAAAG
Found at i:12860809 original size:21 final size:21
Alignment explanation
Indices: 12860762--12860810 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
12860752 TTATAGGAAA
* *
12860762 AAAATATTTAATGGGAAATTTT
1 AAAA-ATTTAAGGGGAAATTAT
* *
12860784 GAAAATTTAAGGGGATATTAT
1 AAAAATTTAAGGGGAAATTAT
12860805 AAAAAT
1 AAAAAT
12860811 AGTCATTTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (21 bp):
AAAAATTTAAGGGGAAATTAT
Found at i:12863236 original size:39 final size:39
Alignment explanation
Indices: 12863182--12863261 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
12863172 TTACAATCAC
12863182 TAACATTCACCTAGCTAGTTTAACCTCTGCTAACTCTTG
1 TAACATTCACCTAGCTAGTTTAACCTCTGCTAACTCTTG
*
12863221 TAACATTCACCTAGCTTGTTTAACCTCTGCTAACTCTTG
1 TAACATTCACCTAGCTAGTTTAACCTCTGCTAACTCTTG
12863260 TA
1 TA
12863262 CCCTTGCTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.38
Consensus pattern (39 bp):
TAACATTCACCTAGCTAGTTTAACCTCTGCTAACTCTTG
Found at i:12863504 original size:11 final size:11
Alignment explanation
Indices: 12863488--12863512 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
12863478 TGTCCGGCCC
12863488 AAACAAAAACA
1 AAACAAAAACA
12863499 AAACAAAAACA
1 AAACAAAAACA
12863510 AAA
1 AAA
12863513 TAAATAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (11 bp):
AAACAAAAACA
Found at i:12865143 original size:18 final size:18
Alignment explanation
Indices: 12865110--12865144 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12865100 TAATGTTCCA
* *
12865110 CTTATTATTATTTATTAT
1 CTTATTATCATATATTAT
12865128 CTTATTATCATATATTA
1 CTTATTATCATATATTA
12865145 CCCGCGTAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (18 bp):
CTTATTATCATATATTAT
Found at i:12869179 original size:17 final size:17
Alignment explanation
Indices: 12869154--12869190 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
12869144 TGAGACACAC
*
12869154 TCCATAGAGTAGTTTTG
1 TCCACAGAGTAGTTTTG
12869171 TCCACAGAGTAGTTTTG
1 TCCACAGAGTAGTTTTG
12869188 TCC
1 TCC
12869191 TCAAGTGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (17 bp):
TCCACAGAGTAGTTTTG
Found at i:12870694 original size:13 final size:13
Alignment explanation
Indices: 12870663--12870704 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
12870653 CTTTGCCTAC
*
12870663 TTATTTTTTTATTT
1 TTATTTTATTA-TT
12870677 GTTATTTTATTATT
1 -TTATTTTATTATT
12870691 TTATTTTATTATT
1 TTATTTTATTATT
12870704 T
1 T
12870705 CCATCACTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 14 0.54
14 2 0.08
15 10 0.38
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (13 bp):
TTATTTTATTATT
Found at i:12870798 original size:16 final size:16
Alignment explanation
Indices: 12870779--12870821 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
12870769 CATCTTTAAG
*
12870779 TATTTATTTATTTTTT
1 TATTTATTTATCTTTT
12870795 TATTTTATTT-TCTTTT
1 TA-TTTATTTATCTTTT
12870811 TATTT-TTTATC
1 TATTTATTTATC
12870822 ATTAGATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 3 0.12
15 5 0.21
16 9 0.38
17 7 0.29
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (16 bp):
TATTTATTTATCTTTT
Found at i:12870817 original size:17 final size:17
Alignment explanation
Indices: 12870781--12870816 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
12870771 TCTTTAAGTA
*
12870781 TTTATTTATTTTTTTAT
1 TTTATTTATCTTTTTAT
12870798 TTTATTT-TCTTTTTAT
1 TTTATTTATCTTTTTAT
12870814 TTT
1 TTT
12870817 TTATCATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTATTTATCTTTTTAT
Found at i:12871736 original size:24 final size:22
Alignment explanation
Indices: 12871709--12871765 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 22
12871699 ATATATAAAA
* *
12871709 AAATATTGAAGAAAGTAGTTTGTG
1 AAATAATGAA-AAA-TAGTTTGCG
12871733 AAATAATG-AAAATAGTTTGCG
1 AAATAATGAAAAATAGTTTGCG
12871754 AAATAATGAAAA
1 AAATAATGAAAA
12871766 TAAAGGACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 16 0.53
22 6 0.20
23 1 0.03
24 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.19, T:0.28
Consensus pattern (22 bp):
AAATAATGAAAAATAGTTTGCG
Found at i:12871748 original size:21 final size:21
Alignment explanation
Indices: 12871719--12871767 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
12871709 AAATATTGAA
* *
12871719 GAAAGTAGTTTGTGAAATAAT
1 GAAAATAGTTTGCGAAATAAT
12871740 GAAAATAGTTTGCGAAATAAT
1 GAAAATAGTTTGCGAAATAAT
12871761 GAAAATA
1 GAAAATA
12871768 AAGGACTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.49, C:0.02, G:0.20, T:0.29
Consensus pattern (21 bp):
GAAAATAGTTTGCGAAATAAT
Found at i:12882554 original size:79 final size:79
Alignment explanation
Indices: 12882423--12882641 Score: 305
Period size: 79 Copynumber: 2.8 Consensus size: 79
12882413 GTCACATCTT
* * ** *
12882423 ATGTAACTGTAGTGAATCAGGATTA-CCTTTTCAGGTCAAATCCTGCCCACCTTAAGTTATCATA
1 ATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCATA
*
12882487 AGGAATCATGTATC
66 AGGAATCATATATC
* *
12882501 GTGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAGGTTACCATA
1 ATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCATA
*
12882566 ATGAATCATATATC
66 AGGAATCATATATC
* * * **
12882580 ATGGAACCGTAGCGAATCAAGATTACCGTTTTCAGGTCAAATCCTATCTGCCTTAAGTTACC
1 ATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACC
12882642 GTAGTGAATC
Statistics
Matches: 124, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
78 22 0.18
79 102 0.82
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (79 bp):
ATGTAACCGTAGCGAATCAGGATTACCCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCATA
AGGAATCATATATC
Found at i:12882686 original size:40 final size:40
Alignment explanation
Indices: 12882632--12882794 Score: 175
Period size: 40 Copynumber: 4.1 Consensus size: 40
12882622 CCTATCTGCC
* * *
12882632 TTAAGTTACCGTAGTGAATCACGAATAAATCCTATTCACT
1 TTAAATTACAGTAGTGAATCAGGAATAAATCCTATTCACT
12882672 TTAAATTACAGTAGTGAATCAGGAATAAATCCTATTCACT
1 TTAAATTACAGTAGTGAATCAGGAATAAATCCTATTCACT
* * *
12882712 TTAAATTACCA-TAGTGAATCAGGAACAAAACCTATCCACT
1 TTAAATTA-CAGTAGTGAATCAGGAATAAATCCTATTCACT
* ** *** * * *
12882752 TTGAGGTATTTTAGTAAATCAGGAACAAATCCTATCCACT
1 TTAAATTACAGTAGTGAATCAGGAATAAATCCTATTCACT
12882792 TTA
1 TTA
12882795 TATTCTCGAA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 105 0.98
41 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.31
Consensus pattern (40 bp):
TTAAATTACAGTAGTGAATCAGGAATAAATCCTATTCACT
Found at i:12882721 original size:80 final size:80
Alignment explanation
Indices: 12882617--12882794 Score: 194
Period size: 80 Copynumber: 2.2 Consensus size: 80
12882607 GTTTTCAGGT
** * * * * * * *
12882617 CAAATCCTATCTGCCTTAAGTTACCGTAGTGAATCACGAATAAATCCTATTCACTTTAAATTACA
1 CAAATCCTATCCACTTTAAATTACCATAGTGAATCACGAACAAAACCTATCCACTTTAAAGTACA
*
12882682 GTAGTGAATCAGGAA
66 GTAGTAAATCAGGAA
* * * * * **
12882697 TAAATCCTATTCACTTTAAATTACCATAGTGAATCAGGAACAAAACCTATCCACTTTGAGGTATT
1 CAAATCCTATCCACTTTAAATTACCATAGTGAATCACGAACAAAACCTATCCACTTTAAAGTACA
*
12882762 TTAGTAAATCAGGAA
66 GTAGTAAATCAGGAA
12882777 CAAATCCTATCCACTTTA
1 CAAATCCTATCCACTTTA
12882795 TATTCTCGAA
Statistics
Matches: 78, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (80 bp):
CAAATCCTATCCACTTTAAATTACCATAGTGAATCACGAACAAAACCTATCCACTTTAAAGTACA
GTAGTAAATCAGGAA
Found at i:12890999 original size:16 final size:16
Alignment explanation
Indices: 12890978--12891008 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
12890968 CATATTATTT
*
12890978 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
12890994 ATATTAAGATAATTA
1 ATATTAAGATAATTA
12891009 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:12891037 original size:28 final size:27
Alignment explanation
Indices: 12890974--12891038 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
12890964 ACTCCATATT
12890974 ATTTATATTAGGATAATTAAATATTAAG
1 ATTT-TATTAGGATAATTAAATATTAAG
* * * *
12891002 ATAATTATTAGGATTATTTAAATTTTAGG
1 AT-TTTATTAGGA-TAATTAAATATTAAG
12891031 ATTTTATT
1 ATTTTATT
12891039 TTAATTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (27 bp):
ATTTTATTAGGATAATTAAATATTAAG
Found at i:12891053 original size:10 final size:10
Alignment explanation
Indices: 12891034--12891065 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
12891024 TTTTAGGATT
12891034 TTAT-TTTAA
1 TTATCTTTAA
12891043 TTATCTTTAA
1 TTATCTTTAA
12891053 TTATCTTTAA
1 TTATCTTTAA
12891063 TTA
1 TTA
12891066 AATGTATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:12892526 original size:3 final size:3
Alignment explanation
Indices: 12892513--12892548 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
12892503 TATATATATG
12892513 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
12892549 TAGAACAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:12892768 original size:45 final size:45
Alignment explanation
Indices: 12892672--12892768 Score: 185
Period size: 45 Copynumber: 2.2 Consensus size: 45
12892662 AATAATGGGT
*
12892672 TAAGGGAAAATCAATGATTGGGTTGTTAGGCTCAAGGGGGTTCAC
1 TAAGGGTAAATCAATGATTGGGTTGTTAGGCTCAAGGGGGTTCAC
12892717 TAAGGGTAAATCAATGATTGGGTTGTTAGGCTCAAGGGGGTTCAC
1 TAAGGGTAAATCAATGATTGGGTTGTTAGGCTCAAGGGGGTTCAC
12892762 TAAGGGT
1 TAAGGGT
12892769 TAATTGTGAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.28, C:0.10, G:0.34, T:0.28
Consensus pattern (45 bp):
TAAGGGTAAATCAATGATTGGGTTGTTAGGCTCAAGGGGGTTCAC
Found at i:12897732 original size:14 final size:13
Alignment explanation
Indices: 12897704--12897740 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
12897694 ATCCTGGAAT
12897704 ATTAA-AACAATA
1 ATTAAGAACAATA
12897716 ATTAAGAACACATA
1 ATTAAGAACA-ATA
12897730 ATTAAGAACAA
1 ATTAAGAACAA
12897741 ATCAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:12898116 original size:13 final size:13
Alignment explanation
Indices: 12898098--12898137 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
12898088 GCTCGACAGG
12898098 GACACGCCCGTGT
1 GACACGCCCGTGT
* *
12898111 GACACGTCTGTGT
1 GACACGCCCGTGT
12898124 GACACGCCCGTGT
1 GACACGCCCGTGT
12898137 G
1 G
12898138 CGGTTGCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:12900351 original size:30 final size:30
Alignment explanation
Indices: 12900317--12900376 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
12900307 ACTTAATAAG
12900317 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
12900347 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
12900377 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:12904910 original size:44 final size:44
Alignment explanation
Indices: 12904847--12904935 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
12904837 ATCAAATTAG
12904847 AAGTATAGTCATATTTGACATGATTATCACGAGCTGAAGAACGC
1 AAGTATAGTCATATTTGACATGATTATCACGAGCTGAAGAACGC
12904891 AAGTATAGTCATATTTGACATGATTATCACGAGCTGAAGAACGC
1 AAGTATAGTCATATTTGACATGATTATCACGAGCTGAAGAACGC
12904935 A
1 A
12904936 CTTCGAACAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (44 bp):
AAGTATAGTCATATTTGACATGATTATCACGAGCTGAAGAACGC
Found at i:12905029 original size:15 final size:15
Alignment explanation
Indices: 12905011--12905064 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
12905001 TCAAAGATAG
12905011 AGAAACCCAGAATAA
1 AGAAACCCAGAATAA
**
12905026 AGAAATACAGAATAA
1 AGAAACCCAGAATAA
* * *
12905041 AGAGATCCAGGATAA
1 AGAAACCCAGAATAA
12905056 AGAAACCCA
1 AGAAACCCA
12905065 AGATACGATA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (15 bp):
AGAAACCCAGAATAA
Found at i:12905069 original size:15 final size:15
Alignment explanation
Indices: 12904992--12905069 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
12904982 AGAAAACTGA
*
12904992 ATAAAGAAATCAAAG
1 ATAAAGAAATCCAAG
* *
12905007 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
*
12905021 AATAAAGAAATAC-AG
1 -ATAAAGAAATCCAAG
* *
12905036 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
12905052 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
12905067 ATA
1 ATA
12905070 CGATACTATG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.90
16 2 0.04
ACGTcount: A:0.59, C:0.13, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:12908412 original size:46 final size:46
Alignment explanation
Indices: 12908345--12908439 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
12908335 TTATGTGCCA
12908345 ATACAAAGTACTAGAGAATACTCACTCAATCAAGTTCAGATCATTC
1 ATACAAAGTACTAGAGAATACTCACTCAATCAAGTTCAGATCATTC
12908391 ATACAAAGTACTAGAGAATACTCACTCAATCAAGTTCAGATCATTC
1 ATACAAAGTACTAGAGAATACTCACTCAATCAAGTTCAGATCATTC
12908437 ATA
1 ATA
12908440 TAATAGAGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (46 bp):
ATACAAAGTACTAGAGAATACTCACTCAATCAAGTTCAGATCATTC
Found at i:12909987 original size:13 final size:13
Alignment explanation
Indices: 12909969--12909994 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12909959 GCCATTCGGG
12909969 TGCAAGGGAGGCA
1 TGCAAGGGAGGCA
12909982 TGCAAGGGAGGCA
1 TGCAAGGGAGGCA
12909995 GTCCTCGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.46, T:0.08
Consensus pattern (13 bp):
TGCAAGGGAGGCA
Found at i:12910429 original size:44 final size:43
Alignment explanation
Indices: 12910363--12910525 Score: 139
Period size: 44 Copynumber: 3.7 Consensus size: 43
12910353 TGCATTCAAC
** * *
12910363 CTACTGCAACTTTAGG-AGGATAAGAATTGTCGCTTCAATCTTCT
1 CTACTGCAACTCCAGGTA-GATAAG-ATTGTAGCTTCAATCTGCT
* * *
12910407 CTACTGCAACTTCAGGTAGATAAGATTATTAGCTTCAGTCTGCT
1 CTACTGCAACTCCAGGTAGATAAGATT-GTAGCTTCAATCTGCT
* * * * * * *
12910451 CCACTACAACTCCAGGGAAAGAAGATCCGTATCTTCAATCTGCT
1 CTACTGCAACTCCAGGTAGATAAGAT-TGTAGCTTCAATCTGCT
*
12910495 CTACTGCAACTCCAGATAGATAAGACTTGTA
1 CTACTGCAACTCCAGGTAGATAAGA-TTGTA
12910526 ACTTGTAGTA
Statistics
Matches: 93, Mismatches: 22, Indels: 8
0.76 0.18 0.07
Matches are distributed among these distances:
43 3 0.03
44 88 0.95
45 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (43 bp):
CTACTGCAACTCCAGGTAGATAAGATTGTAGCTTCAATCTGCT
Found at i:12910605 original size:33 final size:33
Alignment explanation
Indices: 12910563--12910628 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
12910553 AACTTCAGGG
* *
12910563 AAATAAGATTCACATCTTCAATCTGCTCCACTA
1 AAATAAGATTCACATATTCAATCTGATCCACTA
12910596 AAATAAGATTCACATATTCAATCTGATCCACTA
1 AAATAAGATTCACATATTCAATCTGATCCACTA
12910629 CAACTTCAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (33 bp):
AAATAAGATTCACATATTCAATCTGATCCACTA
Found at i:12910725 original size:44 final size:44
Alignment explanation
Indices: 12910677--12911028 Score: 262
Period size: 44 Copynumber: 8.0 Consensus size: 44
12910667 ATAAAACTTG
* *
12910677 TAACTTTAACCTGCTCTACTGCAACTTCAAGGAGATAAGGTTTA
1 TAACTTTAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTA
* * * ** *
12910721 TAACTTTAATCTGCTTTGCTGTAA-TTTTAGAGAGATAAGATTTCC
1 TAACTTTAATCTGCTCTACTGCAACTTCAAG-GAGATAAGATTT-A
* * * * * *
12910766 TATCTTCAATCTGCTCTACTGCATCTTCAGGGGGATAAGATTTG
1 TAACTTTAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTA
* * * * *
12910810 TAACTTCAATCTGCTCTACTACAACTTTAGGGAGATAAGGTTTA
1 TAACTTTAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTA
** * * * *
12910854 TAGTTTTAATCCGCT-TTCTGCAATTTC-AGAGAGATAAGATTTGC
1 TAACTTTAATCTGCTCTACTGCAACTTCAAG-GAGATAAGATTT-A
* * * * * * *
12910898 TATCTTTAATCTACTCCACTGCATCTTCAGGGAGATAGGATTTG
1 TAACTTTAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTA
* * *
12910942 TAACTTTAATCTGCTCCACTGCAAC-TCTAGGGAGATAAGATTAA
1 TAACTTTAATCTGCTCTACTGCAACTTC-AAGGAGATAAGATTTA
** * * * *
12910986 TGGCTTCAATATGCTCCATTGCAACTTCAAGGAGATAAGATTT
1 TAACTTTAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTT
12911029 GCCATAGTCA
Statistics
Matches: 238, Mismatches: 61, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
42 1 0.00
43 25 0.11
44 158 0.66
45 50 0.21
46 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35
Consensus pattern (44 bp):
TAACTTTAATCTGCTCTACTGCAACTTCAAGGAGATAAGATTTA
Found at i:12910941 original size:132 final size:133
Alignment explanation
Indices: 12910674--12910980 Score: 445
Period size: 132 Copynumber: 2.3 Consensus size: 133
12910664 GATATAAAAC
* * * *
12910674 TTGTAACTTTAACCTGCTCTACTGCAACTTCAAGGAGATAAGGTTTATAACTTTAATCTGCTTTG
1 TTGTAACTTTAATCTGCTCTACTGCAACTTTAGGGAGATAAGGTTTATAACTTTAATCCGCTTTG
* * * * *
12910739 CTGTAATTTTAGAGAGATAAGATTTCCTATCTTCAATCTGCTCTACTGCATCTTCAGGGGGATAA
66 CTGCAATTTCAGAGAGATAAGATTTCCTATCTTCAATCTACTCCACTGCATCTTCAGGGAGATAA
12910804 GAT
131 GAT
* * **
12910807 TTGTAACTTCAATCTGCTCTACTACAACTTTAGGGAGATAAGGTTTATAGTTTTAATCCGCTTT-
1 TTGTAACTTTAATCTGCTCTACTGCAACTTTAGGGAGATAAGGTTTATAACTTTAATCCGCTTTG
* * *
12910871 CTGCAATTTCAGAGAGATAAGATTTGCTATCTTTAATCTACTCCACTGCATCTTCAGGGAGATAG
66 CTGCAATTTCAGAGAGATAAGATTTCCTATCTTCAATCTACTCCACTGCATCTTCAGGGAGATAA
12910936 GAT
131 GAT
* *
12910939 TTGTAACTTTAATCTGCTCCACTGCAACTCTAGGGAGATAAG
1 TTGTAACTTTAATCTGCTCTACTGCAACTTTAGGGAGATAAG
12910981 ATTAATGGCT
Statistics
Matches: 154, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
132 98 0.64
133 56 0.36
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (133 bp):
TTGTAACTTTAATCTGCTCTACTGCAACTTTAGGGAGATAAGGTTTATAACTTTAATCCGCTTTG
CTGCAATTTCAGAGAGATAAGATTTCCTATCTTCAATCTACTCCACTGCATCTTCAGGGAGATAA
GAT
Found at i:12914401 original size:28 final size:28
Alignment explanation
Indices: 12914360--12914432 Score: 123
Period size: 28 Copynumber: 2.7 Consensus size: 28
12914350 TTTAAAACCC
*
12914360 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
12914387 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
12914415 TAGGGGTAATTTC-GTAAT
1 TAGGGGTAATTTCGGTAAT
12914433 CTACGCTACT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 12 0.27
28 32 0.73
ACGTcount: A:0.21, C:0.10, G:0.26, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:12916261 original size:19 final size:18
Alignment explanation
Indices: 12916224--12916267 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
12916214 ATACATACAG
12916224 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
12916241 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
12916260 TACTAATT
1 TAATAATT
12916268 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:12920413 original size:12 final size:12
Alignment explanation
Indices: 12920396--12920421 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12920386 TTCCCATATT
12920396 AATGAACTTTTC
1 AATGAACTTTTC
12920408 AATGAACTTTTC
1 AATGAACTTTTC
12920420 AA
1 AA
12920422 ATGCGATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (12 bp):
AATGAACTTTTC
Found at i:12921950 original size:19 final size:20
Alignment explanation
Indices: 12921934--12921978 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
12921924 TTATGAAACT
*
12921934 TAATGCATATG-ATGAAATA
1 TAATGCAGATGAATGAAATA
12921953 TAATGCAGATGAATGAAATA
1 TAATGCAGATGAATGAAATA
12921973 -AATGCA
1 TAATGCA
12921979 AAAAGAGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATA
Found at i:12925662 original size:7 final size:8
Alignment explanation
Indices: 12925634--12925661 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
12925624 ATAAAGTGAT
12925634 AAAAATAA
1 AAAAATAA
12925642 AAAAATAA
1 AAAAATAA
12925650 AAAAATAA
1 AAAAATAA
12925658 AAAA
1 AAAA
12925662 TGCTAGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAATAA
Found at i:12933365 original size:20 final size:21
Alignment explanation
Indices: 12933342--12933385 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
12933332 TCGTTATTTA
*
12933342 TTTTATCTTTTTA-ATTTAAT
1 TTTTATCTTTTTAGAATTAAT
*
12933362 TTTTATTTTTTTAGAATTAAT
1 TTTTATCTTTTTAGAATTAAT
12933383 TTT
1 TTT
12933386 AAGTTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTATCTTTTTAGAATTAAT
Found at i:12933392 original size:22 final size:20
Alignment explanation
Indices: 12933349--12933401 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
12933339 TTATTTTATC
* *
12933349 TTTTTAATTTAATTTTTATT
1 TTTTTAAATTAATTTTAATT
12933369 TTTTTAGAATTAATTTTAAGTT
1 TTTTTA-AATTAATTTTAA-TT
12933391 TTCTTTAAATT
1 TT-TTTAAATT
12933402 GAGAAAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 6 0.21
21 10 0.36
22 8 0.29
23 4 0.14
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (20 bp):
TTTTTAAATTAATTTTAATT
Found at i:12933537 original size:21 final size:21
Alignment explanation
Indices: 12933504--12933551 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
12933494 CTTGTAACAG
*
12933504 CGAAAAACTTGAAATTTTATA
1 CGAAAAACCTGAAATTTTATA
* *
12933525 CGAAATACCTGAATTTTTATA
1 CGAAAAACCTGAAATTTTATA
12933546 -GAAAAA
1 CGAAAAA
12933552 GTTTGAGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.31
Consensus pattern (21 bp):
CGAAAAACCTGAAATTTTATA
Found at i:12934866 original size:51 final size:51
Alignment explanation
Indices: 12934808--12934943 Score: 227
Period size: 53 Copynumber: 2.6 Consensus size: 51
12934798 GTATAAAAGC
12934808 ATTAGTTTGTTCTTTGTAGATAGCATTCTTTGTAGTTTTGTTAGTTAATCT
1 ATTAGTTTGTTCTTTGTAGATAGCATTCTTTGTAGTTTTGTTAGTTAATCT
* **
12934859 ATTAGTTTGTTCTTTGTAGATAGCATCCTAATAATAGTTTTGTTAGTTAATCT
1 ATTAGTTTGTTCTTTGTAGATAGCATTCT--TTGTAGTTTTGTTAGTTAATCT
12934912 ATTAGTTTGTTCTTTGTAGATAGCATTCTTTG
1 ATTAGTTTGTTCTTTGTAGATAGCATTCTTTG
12934944 CTATGATGTA
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
51 29 0.38
53 48 0.62
ACGTcount: A:0.22, C:0.09, G:0.17, T:0.52
Consensus pattern (51 bp):
ATTAGTTTGTTCTTTGTAGATAGCATTCTTTGTAGTTTTGTTAGTTAATCT
Found at i:12934875 original size:27 final size:27
Alignment explanation
Indices: 12934844--12934928 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
12934834 TCTTTGTAGT
12934844 TTTGTTAGTTAATCTATTAGTTTGTTC
1 TTTGTTAGTTAATCTATTAGTTTGTTC
* * * *
12934871 TTTG-TAGATAGCATCCTAATA-ATAG-T-
1 TTTGTTAGTTA--AT-CTATTAGTTTGTTC
12934897 TTTGTTAGTTAATCTATTAGTTTGTTC
1 TTTGTTAGTTAATCTATTAGTTTGTTC
12934924 TTTGT
1 TTTGT
12934929 AGATAGCATT
Statistics
Matches: 43, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
24 5 0.12
25 4 0.09
26 10 0.23
27 15 0.35
28 4 0.09
29 5 0.12
ACGTcount: A:0.22, C:0.08, G:0.15, T:0.54
Consensus pattern (27 bp):
TTTGTTAGTTAATCTATTAGTTTGTTC
Found at i:12940387 original size:15 final size:15
Alignment explanation
Indices: 12940356--12940395 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
12940346 GAGAGAAAAG
12940356 AGCAAAAAA-ATTCC
1 AGCAAAAAATATTCC
* *
12940370 AGCAAAAAATTTTTC
1 AGCAAAAAATATTCC
12940385 AGCAAAAAATA
1 AGCAAAAAATA
12940396 ACCAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.57, C:0.15, G:0.07, T:0.20
Consensus pattern (15 bp):
AGCAAAAAATATTCC
Found at i:12952357 original size:78 final size:72
Alignment explanation
Indices: 12952093--12952530 Score: 501
Period size: 72 Copynumber: 6.0 Consensus size: 72
12952083 ATGTTGTTAC
* *
12952093 TTCTGTTTTCAAAATTCAACTCATATTGCGAGCAATGAGTTGAGCCTCAAGACATGTTGAGGTAA
1 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAA
12952158 TTTCAAT
66 TTTCAAT
* * *
12952165 TTATGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
1 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAA
12952230 TTTCAAT
66 TTTCAAT
*
12952237 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAT
1 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAA
12952302 TTTCAAT
66 TTTCAAT
* *
12952309 TTCTGTTTTTCAAACAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACATGCTG
1 TTCTG-TTTT----C-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
*
12952374 AGGT-ATGTC--T
60 AGGTAATTTCAAT
**** * ** *
12952384 TTC---AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAA
1 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAA
*
12952446 TTTTAAT
66 TTTCAAT
* * * *** * * *
12952453 TTCTGTTGTCAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGG
1 TTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACATGCTGAGG
*
12952518 TATTTTCAAT
63 TAATTTCAAT
12952528 TTC
1 TTC
12952531 CATTTTTCAA
Statistics
Matches: 320, Mismatches: 31, Indels: 27
0.85 0.08 0.07
Matches are distributed among these distances:
66 49 0.15
67 3 0.01
69 4 0.01
72 142 0.44
73 42 0.13
75 25 0.08
77 4 0.01
78 51 0.16
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (72 bp):
TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTAA
TTTCAAT
Found at i:12952423 original size:66 final size:67
Alignment explanation
Indices: 12952316--12952444 Score: 215
Period size: 66 Copynumber: 1.9 Consensus size: 67
12952306 AATTTCTGTT
*
12952316 TTTCAAACAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATG
1 TTTCAAACAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATG
12952381 TC
66 TC
* **
12952383 TTTCAAA-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA
1 TTTCAAACAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
12952445 ATTTTAATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
66 51 0.88
67 7 0.12
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (67 bp):
TTTCAAACAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATG
TC
Found at i:12952615 original size:93 final size:93
Alignment explanation
Indices: 12952463--12952633 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
12952453 TTCTGTTGTC
* *
12952463 AAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
12952528 TTCCATTTTTCAATTTCTACCTTTCAAA
66 TTCCATTTTTCAATTTCTACCTTTCAAA
* * * * *
12952556 AAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCAA
**
12952620 TTTCTGTTTTTCAA
65 TTTCCATTTTTCAA
12952634 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (93 bp):
AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
TTCCATTTTTCAATTTCTACCTTTCAAA
Found at i:12952662 original size:77 final size:77
Alignment explanation
Indices: 12952555--12953037 Score: 325
Period size: 77 Copynumber: 6.0 Consensus size: 77
12952545 TACCTTTCAA
* * *
12952555 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
12952620 TTTCTGTTTTTC
66 TTTCTGTTTTTC
* * *** *
12952632 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAG-CTTCAGATCACACACTGAGATATTTTTT
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTT-GGCTCACGTGCTGAGCTA---TTT
* *
12952696 TCAATTTATATTTTTC
62 TCAATTTCTGTTTTTC
* * * * * * * *
12952712 AAAAAAATCAACTCACATTACGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGCT-GAGCTATTTTC-
*
12952776 AAATT-TGTTTTTC
64 AATTTCTGTTTTTC
*
12952789 AAATTCTGTTTTCAAAAATCAACTCATATTGTGAGAA-GTGAGTTGAGCCTTGGCTCACGTGCTG
1 -AA----------AAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTTGGCTCACGTGCTG
*
12952853 AGCTATTTTCAATTTCTGTTTTTT
54 AGCTATTTTCAATTTCTGTTTTTC
** * * * *** * * *
12952877 TTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTACGAGAGGTGAGTTGA
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGC--CTT-GGCTC-AC--GTGCTGAGCT-A
*
12952942 GCCTTTTGCAAATTCTG-TTTTC
59 ---TTTT-CAATTTCTGTTTTTC
12952964 --AAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCA
*
12953026 ATTTCTATTTTT
65 ATTTCTGTTTTT
12953038 AATATCTAGT
Statistics
Matches: 315, Mismatches: 56, Indels: 72
0.71 0.13 0.16
Matches are distributed among these distances:
74 7 0.02
75 8 0.03
76 4 0.01
77 89 0.28
78 7 0.02
79 10 0.03
80 62 0.20
81 6 0.02
82 2 0.01
83 9 0.03
84 1 0.00
85 31 0.10
86 1 0.00
87 12 0.04
88 64 0.20
89 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
TTTCTGTTTTTC
Found at i:12952855 original size:245 final size:239
Alignment explanation
Indices: 12952389--12952915 Score: 655
Period size: 245 Copynumber: 2.2 Consensus size: 239
12952379 TGTCTTTCAA
* * * *
12952389 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAACACACACTGAGATAATTTTAATT
* ** *
12952454 TCTGTTGTCAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGT
66 TATGTTGTCAAAAAATCAACTCACATTACGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGT
* * *
12952519 ATTTTCAATTTCCATTTTTCAATTTCTACCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTG
131 ATTTTCAATTT-CATTTTTCAAATTCTACCTTTC---AAAAAATCAACTCATATTGCGAGAAGTG
12952584 AGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTC
192 AGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTC
* *
12952632 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCTTCAGATCACACACTGAGATATTTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-A-CACACACTGAGATA--ATTTT
* * * * * *
12952697 CAATTTATATTTTTCAAAAAAATCAACTCACATTACGAGATGTGAGTTGAGCCTCGGGTCACATG
62 -AATTTAT-GTTGTC-AAAAAATCAACTCACATTACGAGAGGCGAGTTGAGCCTCAGGTCACACG
* * ** *
12952762 TCGAGGTATTTTCAAAATTT-GTTTTTCAAATTCT-GTTTTC-AAAAATCAACTCATATTGTGAG
124 CCGAGGTATTTTC--AATTTCATTTTTCAAATTCTACCTTTCAAAAAATCAACTCATATTGCGAG
* *
12952824 AAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTT
187 AAGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTC
** *
12952877 TTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT
12952916 TTTAATTTCT
Statistics
Matches: 245, Mismatches: 30, Indels: 16
0.84 0.10 0.05
Matches are distributed among these distances:
243 39 0.16
244 1 0.00
245 116 0.47
247 4 0.02
248 6 0.02
249 8 0.03
250 66 0.27
252 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (239 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAACACACACTGAGATAATTTTAATT
TATGTTGTCAAAAAATCAACTCACATTACGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGT
ATTTTCAATTTCATTTTTCAAATTCTACCTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTT
GAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTC
Found at i:12953346 original size:29 final size:29
Alignment explanation
Indices: 12953270--12953369 Score: 103
Period size: 30 Copynumber: 3.4 Consensus size: 29
12953260 TTTAATAAAA
* * *
12953270 AAATTGCATTTTGACCCCTAAACTTTTTTT
1 AAATTACATTTT-AACCCTAAACTTTTCTT
* **
12953300 AAATTTCACTTAGAACCCTAAACTTTTCTT
1 AAATTACA-TTTTAACCCTAAACTTTTCTT
*
12953330 AAATTACATTTTAACCCTAAA-TTTTCTAA
1 AAATTACATTTTAACCCTAAACTTTTCT-T
12953359 AAATTACATTT
1 AAATTACATTT
12953370 AGCCCCAGAA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 6 0.10
29 22 0.37
30 29 0.49
31 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.43
Consensus pattern (29 bp):
AAATTACATTTTAACCCTAAACTTTTCTT
Found at i:12955960 original size:29 final size:29
Alignment explanation
Indices: 12955927--12955993 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
12955917 TCATAATGAC
* *
12955927 TAGATTAAACTATTCCCTCTATTATTAAA
1 TAGATTAAACTAGTCCCTATATTATTAAA
* **
12955956 TAGATCAATTTAGTCCCTATATTATTAAA
1 TAGATTAAACTAGTCCCTATATTATTAAA
* *
12955985 AAAATTAAA
1 TAGATTAAA
12955994 TAATTCCAAG
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.39
Consensus pattern (29 bp):
TAGATTAAACTAGTCCCTATATTATTAAA
Found at i:12956408 original size:13 final size:14
Alignment explanation
Indices: 12956385--12956420 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
12956375 GAAGAACAGT
*
12956385 AACATCAAAAACCA
1 AACATCAAAAACAA
12956399 AACA-CAAAAACAA
1 AACATCAAAAACAA
12956412 AACATCAAA
1 AACATCAAA
12956421 CCTTCCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (14 bp):
AACATCAAAAACAA
Found at i:12959385 original size:3 final size:3
Alignment explanation
Indices: 12959377--12959411 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
12959367 TGTATTTTCA
*
12959377 TAT TAT TAT TAT TAT AAT TAT TAT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
12959412 GTATATTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:12976368 original size:30 final size:30
Alignment explanation
Indices: 12976332--12976391 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
12976322 TTCCCGAGCC
12976332 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
12976362 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
12976392 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:12976864 original size:47 final size:46
Alignment explanation
Indices: 12976813--12976989 Score: 218
Period size: 47 Copynumber: 3.8 Consensus size: 46
12976803 TGGTTGAACA
12976813 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
12976860 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
12976905 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
12976953 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
12976990 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.33
47 58 0.51
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:12984416 original size:28 final size:28
Alignment explanation
Indices: 12984355--12984452 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
12984345 TCACAAATTG
** * *
12984355 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
12984384 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
12984412 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
12984440 GCACTAAGTGTGC
1 GCACTAAGTGTGC
12984453 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:12986217 original size:40 final size:40
Alignment explanation
Indices: 12986162--12986239 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
12986152 TGCGGTACCT
*
12986162 TATGGTGTGTAGGGATGGATGAGACGATTGTATCCCCATA
1 TATGGTGTGCAGGGATGGATGAGACGATTGTATCCCCATA
* * * *
12986202 TATGGTGTGCAGGGATGGGTGGGTCGATTTTATCCCCA
1 TATGGTGTGCAGGGATGGATGAGACGATTGTATCCCCA
12986240 CATAGTGTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.21, C:0.14, G:0.35, T:0.31
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATGAGACGATTGTATCCCCATA
Found at i:12990978 original size:31 final size:31
Alignment explanation
Indices: 12990943--12991003 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
12990933 CTTGTCACTT
12990943 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTATTCACTGATCAG
** * *
12990974 GTAGCCGGAGCTACCATTTTTCACTGATCA
1 GTAGCCAAAGCTACCACTATTCACTGATCA
12991004 AATTACTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTATTCACTGATCAG
Found at i:12991305 original size:70 final size:70
Alignment explanation
Indices: 12991099--12991468 Score: 372
Period size: 70 Copynumber: 5.3 Consensus size: 70
12991089 TCCTCATTGA
* * * * * *
12991099 AATACCATACCTACATTTTATAACTCGGTATAGA-GA-ACATCATACCTACTTTTCAT-GCTCGG
1 AATACCATACCTACGTTTCACAACTCAGTATGGACGATAC--CATACCTACGTTTCATAGCTCGG
*
12991161 TATGGAA
64 TATGGAT
* * * * * **
12991168 AATACCATACCT-CTATTTCATAACTCAGTATGGACGATGCCATACTTACGTATCATAGCTCAAT
1 AATACCATACCTAC-GTTTCACAACTCAGTATGGACGATACCATACCTACGTTTCATAGCTCGGT
*
12991232 ATGGAC
65 ATGGAT
* ** * * *
12991238 GACGCCATACCTACGTTTCATAGCTCAGTATGGACGATGCCATACCTACGTTTCATAGCTCGGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGACGATACCATACCTACGTTTCATAGCTCGGTA
12991303 TGGA-
66 TGGAT
* *** * * *
12991307 AATACCATACCTACGTTTCACAGCTCAGTATGGTTAATACCATACCTATGTTTCACAACTCGGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGACGATACCATACCTACGTTTCATAGCTCGGTA
*
12991372 TGGTT
66 TGGAT
* * * *
12991377 AATACCATACCTACGTTTCACAACTCGGTATGGATGATACCATACCTACGTTTCACAACTCGGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGACGATACCATACCTACGTTTCATAGCTCGGTA
12991442 TGGAT
66 TGGAT
*
12991447 GATACCATACCTACGTTTCACA
1 AATACCATACCTACGTTTCACA
12991469 CTTTGCCATG
Statistics
Matches: 257, Mismatches: 38, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
68 1 0.00
69 99 0.39
70 155 0.60
71 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (70 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGACGATACCATACCTACGTTTCATAGCTCGGTA
TGGAT
Found at i:12991318 original size:139 final size:139
Alignment explanation
Indices: 12991139--12991468 Score: 358
Period size: 139 Copynumber: 2.4 Consensus size: 139
12991129 TAGAGAACAT
* *
12991139 CATACCTACTTTTCAT-GCTCGGTATGGAAAATACCATACCT-CTATTTCATAACTCAGTATGGA
1 CATACCTACGTTTCATAGCTCGGTATGG-AAATACCATACCTAC-ATTTCACAACTCAGTATGGA
* * * * * * * * *
12991202 CGATGCCATACTTACGTATCATAGCTCAATATGGACGACGCCATACCTACGTTTCATAGCTCAGT
64 CAATACCATACCTACGTATCACAACTCAATATGGACAACACCATACCTACGTTTCACAACTCAGT
*
12991267 ATGGACGATGC
129 ATGGACGATAC
* * **
12991278 CATACCTACGTTTCATAGCTCGGTATGGAAATACCATACCTACGTTTCACAGCTCAGTATGGTTA
1 CATACCTACGTTTCATAGCTCGGTATGGAAATACCATACCTACATTTCACAACTCAGTATGGACA
* * ** ** * *
12991343 ATACCATACCTATGTTTCACAACTCGGTATGGTTAATACCATACCTACGTTTCACAACTCGGTAT
66 ATACCATACCTACGTATCACAACTCAATATGGACAACACCATACCTACGTTTCACAACTCAGTAT
*
12991408 GGATGATAC
131 GGACGATAC
* * * *
12991417 CATACCTACGTTTCACAACTCGGTATGGATGATACCATACCTACGTTTCACA
1 CATACCTACGTTTCATAGCTCGGTATGGA-AATACCATACCTACATTTCACA
12991469 CTTTGCCATG
Statistics
Matches: 160, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
139 127 0.79
140 33 0.21
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (139 bp):
CATACCTACGTTTCATAGCTCGGTATGGAAATACCATACCTACATTTCACAACTCAGTATGGACA
ATACCATACCTACGTATCACAACTCAATATGGACAACACCATACCTACGTTTCACAACTCAGTAT
GGACGATAC
Found at i:12991480 original size:35 final size:35
Alignment explanation
Indices: 12991099--12991468 Score: 332
Period size: 35 Copynumber: 10.6 Consensus size: 35
12991089 TCCTCATTGA
* * * * *
12991099 AATACCATACCTACATTTTATAACTCGGTATAGAG
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* * * ** *
12991134 AACATCATACCTACTTTTCA-TGCTCGGTATGGAA
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* * * *
12991168 AATACCATACCT-CTATTTCATAACTCAGTATGGAC
1 AATACCATACCTAC-GTTTCACAACTCGGTATGGAT
* * * * * * ** *
12991203 GATGCCATACTTACGTATCATAGCTCAATATGGAC
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* ** * * * *
12991238 GACGCCATACCTACGTTTCATAGCTCAGTATGGAC
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* * * *
12991273 GATGCCATACCTACGTTTCATAGCTCGGTATGGA-
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* * *
12991307 AATACCATACCTACGTTTCACAGCTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
* *
12991342 AATACCATACCTATGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
12991377 AATACCATACCTACGTTTCACAACTCGGTATGGAT
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
*
12991412 GATACCATACCTACGTTTCACAACTCGGTATGGAT
1 AATACCATACCTACGTTTCACAACTCGGTATGGAT
*
12991447 GATACCATACCTACGTTTCACA
1 AATACCATACCTACGTTTCACA
12991469 CTTTGCCATG
Statistics
Matches: 292, Mismatches: 39, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
33 1 0.00
34 54 0.18
35 236 0.81
36 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCGGTATGGAT
Found at i:12996870 original size:31 final size:32
Alignment explanation
Indices: 12996819--12996890 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 32
12996809 TTAAAAAAAC
* *
12996819 AATTTAACTCTTTTTAAAAAAGTTAATAGTCA
1 AATTTAACTCTTTTTAAAAAAGTTAAGAGCCA
* * *
12996851 AATTTAA-TTTTTTTTAAAAAGTTGAGAGCCA
1 AATTTAACTCTTTTTAAAAAAGTTAAGAGCCA
12996882 AATTTAACT
1 AATTTAACT
12996891 AAAAAAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 26 0.76
32 8 0.24
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (32 bp):
AATTTAACTCTTTTTAAAAAAGTTAAGAGCCA
Found at i:12997874 original size:13 final size:14
Alignment explanation
Indices: 12997858--12997893 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
12997848 CAATCTCATA
12997858 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
12997871 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
12997884 TCTC-ATTTCA
1 TCTCAATTTCA
12997894 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:12997883 original size:18 final size:19
Alignment explanation
Indices: 12997845--12997885 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
12997835 TGGTTCATGT
12997845 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
12997864 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
12997882 TTTC
1 TTTC
12997886 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:12998075 original size:39 final size:38
Alignment explanation
Indices: 12998008--12998142 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
12997998 ACCAATATGG
* * *
12998008 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
12998047 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
12998085 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
12998126 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
12998143 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:12999746 original size:5 final size:5
Alignment explanation
Indices: 12999736--12999788 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
12999726 TTACTTATTT
* *
12999736 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
12999784 ATATA
1 ATATA
12999789 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:12999752 original size:12 final size:12
Alignment explanation
Indices: 12999735--12999790 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
12999725 TTTACTTATT
12999735 TATATAATATAA
1 TATATAATATAA
12999747 TATATAATATAATA
1 TATATAATAT-A-A
12999761 TACTATAATATAA
1 TA-TATAATATAA
*
12999774 TA-ATAATTTAA
1 TATATAATATAA
12999785 TATATA
1 TATATA
12999791 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:13010470 original size:18 final size:18
Alignment explanation
Indices: 13010447--13010500 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
13010437 ACAAGTGGTG
13010447 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
13010465 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
13010477 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
13010495 GTGGAG
1 GTGGAG
13010501 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:13010483 original size:30 final size:30
Alignment explanation
Indices: 13010442--13010540 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
13010432 TAGGTACAAG
13010442 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
13010472 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
13010502 TGGTGGTGGAGCAAATGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
13010532 TGGTGGTGG
1 TGGTGGTGG
13010541 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.18, C:0.05, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:13011525 original size:15 final size:16
Alignment explanation
Indices: 13011492--13011525 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13011482 TTGATTGTTG
*
13011492 AAAAATATAAATAGAA
1 AAAAACATAAATAGAA
*
13011508 AAAAACATAAATTGAA
1 AAAAACATAAATAGAA
13011524 AA
1 AA
13011526 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATAGAA
Found at i:13011716 original size:73 final size:73
Alignment explanation
Indices: 13011510--13012031 Score: 789
Period size: 73 Copynumber: 7.1 Consensus size: 73
13011500 AAATAGAAAA
* * * *
13011510 AAACATAAATTGAAAATACCTCAGCATGTCCC-GAGGCTCAACTCACCTCTCGCAATATCAGTTG
1 AAACAGAAATTGAAATTACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
13011574 ATTTTTTTGAA
65 A--TTTTTGAC
* ** *
13011585 AAACAGAACTTGAAAAGCACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
1 AAACAGAAATTG-AAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
13011650 ATTTTTGAC
65 ATTTTTGAC
*
13011659 AAACAGAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
13011723 TGTTTGAC
66 TTTTTGAC
13011731 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
13011796 TTTTTGAC
66 TTTTTGAC
* *
13011804 AAACAAAAATTGAAATTACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
13011869 TTTTTGAC
66 TTTTTGAC
13011877 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
13011942 TTTTTGAC
66 TTTTTGAC
* * * ** * *
13011950 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTAA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
13012015 ATTTTGA-
66 TTTTTGAC
*
13012022 AAATAGAAAT
1 AAACAGAAAT
13012032 AAAGACATCA
Statistics
Matches: 415, Mismatches: 29, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
72 79 0.19
73 261 0.63
74 18 0.04
75 13 0.03
76 44 0.11
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (73 bp):
AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAC
Found at i:13011897 original size:218 final size:220
Alignment explanation
Indices: 13011510--13012024 Score: 793
Period size: 218 Copynumber: 2.3 Consensus size: 220
13011500 AAATAGAAAA
* * * *
13011510 AAACATAAATTGAAAATACCTCAGCATGTCCC-GAGGCTCAACTCACCTCTCGCAATATCAGTTG
1 AAACAGAAATTGAAATTACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
13011574 ATTTTTTTGAAAAACAGAACTTGAAAAGCACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGT
65 A--TTTTTGAAAAACAAAAATTGAAAAGCACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGC
*
13011639 AATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCA
128 AATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCA
13011704 CCTCTCGCAATATGAGTTG-TGTTTGAC
193 CCTCTCGCAATATGAGTTGATGTTTGAC
13011731 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* **
13011796 TTTTTGACAAACAAAAATTG-AAATTACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
66 TTTTTGAAAAACAAAAATTGAAAAGCACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
13011860 ATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCT
131 ATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCT
*
13011925 CTCGCAATATGAGTTGATTTTTGAC
196 CTCGCAATATGAGTTGATGTTTGAC
* * * ** * *
13011950 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTAA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
13012015 ATTTTGAAAA
66 TTTTTGAAAA
13012025 TAGAAATAAA
Statistics
Matches: 270, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
218 120 0.44
219 90 0.33
220 3 0.01
221 57 0.21
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (220 bp):
AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAAACAAAAATTGAAAAGCACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATGTTTGAC
Found at i:13023135 original size:18 final size:18
Alignment explanation
Indices: 13023112--13023165 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
13023102 ACAAGTGGTG
13023112 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
13023130 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
13023142 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
13023160 GTGGAG
1 GTGGAG
13023166 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:13023195 original size:18 final size:17
Alignment explanation
Indices: 13023106--13023195 Score: 56
Period size: 18 Copynumber: 5.7 Consensus size: 17
13023096 GTAGGTACAA
*
13023106 GTGGTGGTGGAGCAAGT
1 GTGGTAGTGGAGCAAGT
13023123 GTGGCTAGT-G-G--AGT
1 GTGG-TAGTGGAGCAAGT
*
13023137 -AGGTAGTGGAGCAAGT
1 GTGGTAGTGGAGCAAGT
13023153 GTGGCTAGT-G-G--AGT
1 GTGG-TAGTGGAGCAAGT
*
13023167 -TGGTGGTGGAGCAAGT
1 GTGGTAGTGGAGCAAGT
13023183 GTGGTTAGTGGAG
1 GTGG-TAGTGGAG
13023196 TTGGTGATGG
Statistics
Matches: 55, Mismatches: 5, Indels: 25
0.65 0.06 0.29
Matches are distributed among these distances:
12 7 0.13
13 7 0.13
14 8 0.15
16 8 0.15
17 11 0.20
18 14 0.25
ACGTcount: A:0.19, C:0.06, G:0.50, T:0.26
Consensus pattern (17 bp):
GTGGTAGTGGAGCAAGT
Found at i:13023197 original size:30 final size:30
Alignment explanation
Indices: 13023107--13023201 Score: 163
Period size: 30 Copynumber: 3.2 Consensus size: 30
13023097 TAGGTACAAG
13023107 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
13023137 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
13023167 TGGTGGTGGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
13023197 TGGTG
1 TGGTG
13023202 ATGGCAAAGG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.18, C:0.05, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:13024129 original size:81 final size:83
Alignment explanation
Indices: 13023861--13024241 Score: 288
Period size: 86 Copynumber: 4.4 Consensus size: 83
13023851 GTGATCCTGA
** * * * * *
13023861 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAATAGACATTAAAATAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAA-A-AAATTGAA
* * ** *
13023925 CATAGCTCAGCACGTGAGCCAAG
63 AATACCTCAGCA--TGTCCCGAG
* * * *
13023948 GCTCAACTCACCTCTCGTAATATGAGTTGGTTTTTTTTTTTG-AAACT-TAATTTGAAAACAGAT
1 GCTCAACTCACCTCTCGCAATATGAGTT-G-----ATTTTTGAAAAATATAAATTGAAAA-A-A-
* *
13024011 TTTGAAAATACTTC-GACATGTGCCTCGAG
57 ATTGAAAATACCTCAG-CATGT-CC-CGAG
* * * * *
13024040 GCTCAACTCATCTCTTGCAATATGAATTAATTTTTG-AAAATATAAATTG-AAGAAATTGAAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAATTGAAAAT
* *
13024103 ACCTCAGCGTGTCCTGAG
66 ACCTCAGCATGTCCCGAG
*
13024121 GCTAAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTG---AAAAAAATTGAA
13024186 AATACCTCAGCATGTCCCGAG
63 AATACCTCAGCATGTCCCGAG
* *
13024207 CCTCAACTCACCTCCCGCAATATGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
13024242 TTGAAAAGCA
Statistics
Matches: 232, Mismatches: 43, Indels: 39
0.74 0.14 0.12
Matches are distributed among these distances:
81 34 0.15
82 15 0.06
83 16 0.07
84 2 0.01
85 1 0.00
86 73 0.31
87 30 0.13
88 1 0.00
90 4 0.02
91 9 0.04
92 47 0.20
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (83 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAATTGAAAAT
ACCTCAGCATGTCCCGAG
Found at i:13024181 original size:13 final size:14
Alignment explanation
Indices: 13024154--13024187 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
13024144 GAGTTGATTT
*
13024154 TTGAAAAATATAAA
1 TTGAAAAATAAAAA
13024168 TTGAAAAA-AAAAA
1 TTGAAAAATAAAAA
13024181 TTGAAAA
1 TTGAAAA
13024188 TACCTCAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (14 bp):
TTGAAAAATAAAAA
Found at i:13024215 original size:86 final size:81
Alignment explanation
Indices: 13024012--13024627 Score: 329
Period size: 73 Copynumber: 8.0 Consensus size: 81
13024002 AAAACAGATT
* * * * *
13024012 TTGAAAATACTTC-GACATGTGCCTCGAGGCTCAACTCATCTCTTGCAATATGAATTAATTTTTG
1 TTGAAAATACCTCAG-CATGT-CC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
13024076 AAAATATAAATTGAAGAAA
63 AAAATATAAATTGAAAAAA
* * *
13024095 TTGAAAATACCTCAGCGTGTCCTGAGGCTAAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AA
13024160 AATATAAATTGAAAAAAAAAA
65 AATATAAATTG----AAAAAA
* *
13024181 TTGAAAATACCTCAGCATGTCCCGAGCCTCAACTCACCTCCCGCAATATGAGTTGATTTTT----
1 TTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* * * *
13024242 -T-TGAAA-AGCAGAAC
66 ATAT-AAATTGAAAAAA
* * * *
13024256 TTGAAAAGCACCTCAGCGTG-CCCTGAGGCTCAACTCACCTTTCGTAATATGAGTTG-TGTTTTG
1 TTGAAAA-TACCTCAGCATGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTG
* *
13024319 -ACA-A-ACA--G---AAA
63 AAAATATAAATTGAAAAAA
* *
13024330 TTGAAATTACCTCAG--TGTGCCCTGAGGCTCAACCCACCTCTCGCAATATGAGTTGATTTTTG-
1 TTGAAAATACCTCAGCATGT-CCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* *
13024392 ACA-A-ACA--G---AAA
64 AAATATAAATTGAAAAAA
* * * * * *
13024403 TTGAAATTACCTCAGCGTGACCTGAGACTCAACTCACCTCTCGTAATATGAGTTG-TGTTTTG-A
1 TTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTGAA
* *
13024466 CA-A-ACA--G---AAA
65 AATATAAATTGAAAAAA
* * * * *
13024476 TTGAAATTACCTCAGCGTG-CCCTGAGACTCAACTCACCTATCGCAATATGAGTT-TTGTTTTG-
1 TTGAAAATACCTCAGCATGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTTGA
* *
13024538 ACA-A-ACA--G---AAA
64 AAATATAAATTGAAAAAA
* *
13024549 TTGAAATTACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
1 TTGAAAATACCTCAGCATGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-
* *
13024613 AAACAGAAATTGAAA
64 AAATATAAATTGAAA
13024628 TTACCTCAAC
Statistics
Matches: 456, Mismatches: 44, Indels: 67
0.80 0.08 0.12
Matches are distributed among these distances:
71 2 0.00
72 3 0.01
73 239 0.52
74 12 0.03
75 18 0.04
76 43 0.09
77 3 0.01
78 2 0.00
79 3 0.01
80 4 0.01
81 34 0.07
82 15 0.03
83 16 0.04
84 1 0.00
86 61 0.13
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (81 bp):
TTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
ATATAAATTGAAAAAA
Found at i:13024361 original size:73 final size:73
Alignment explanation
Indices: 13024178--13024694 Score: 711
Period size: 73 Copynumber: 7.1 Consensus size: 73
13024168 TTGAAAAAAA
* * * * *
13024178 AAATTGAAAATACCTCAGCATGTCCC-GAGCCTCAACTCACCTCCCGCAATATGAGTTGATTTTT
1 AAATTGAAATTACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG--TGTT
13024242 TTGA-AAAGCAG
63 TTGACAAA-CAG
* ** * *
13024253 AACTTGAAAAGCACCTCAGCGTGCCCTGAGGCTCAACTCACCTTTCGTAATATGAGTTGTGTTTT
1 AAATTG-AAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGTGTTTT
13024318 GACAAACAG
65 GACAAACAG
* *
13024327 AAATTGAAATTACCTCAGTGTGCCCTGAGGCTCAACCCACCTCTCGCAATATGAGTTGAT-TTTT
1 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TGTTTT
13024391 GACAAACAG
65 GACAAACAG
* * *
13024400 AAATTGAAATTACCTCAGCGTGACCTGAGACTCAACTCACCTCTCGTAATATGAGTTGTGTTTTG
1 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGTGTTTTG
13024465 ACAAACAG
66 ACAAACAG
* * *
13024473 AAATTGAAATTACCTCAGCGTGCCCTGAGACTCAACTCACCTATCGCAATATGAGTTTTGTTTTG
1 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGTGTTTTG
13024538 ACAAACAG
66 ACAAACAG
13024546 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-TTTT
1 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TGTTTT
13024610 GACAAACAG
65 GACAAACAG
* * ** **
13024619 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGTGTTTTG
*
13024684 A-AAATAG
66 ACAAACAG
13024691 AAAT
1 AAAT
13024695 AACAACATCA
Statistics
Matches: 401, Mismatches: 34, Indels: 17
0.89 0.08 0.04
Matches are distributed among these distances:
72 10 0.02
73 322 0.80
74 17 0.04
75 11 0.03
76 41 0.10
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28
Consensus pattern (73 bp):
AAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGTGTTTTG
ACAAACAG
Found at i:13031833 original size:44 final size:44
Alignment explanation
Indices: 13031724--13032061 Score: 257
Period size: 44 Copynumber: 7.5 Consensus size: 44
13031714 AGTTATAAGA
* * * * *
13031724 TTGCAGTAGAGCAGATTAAAGCTATAAA-CTTTATCTCACTGAAG
1 TTGCAGTGGAGCAGATTGAAGTTACAAATC-TTATCTCCCTGAAG
* * * *
13031768 TTTGCAGTGGAGAAGATTGAAGTTATAAGTCTTATCTCCTTGAAG
1 -TTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAG
* * * * * *
13031813 TTGCAGTGGAGCAGACTGAAGATAGCGAATTTTATTTCCCTAAAG
1 TTGCAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTGAAG
* * *
13031858 TTTCAGTAGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGAAG
1 TTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAG
* *
13031902 TTGCAGTGGAGCAGATTGAAGTTACGAGT-TTCATCTCCCTGAAG
1 TTGCAGTGGAGCAGATTGAAGTTACAAATCTT-ATCTCCCTGAAG
** * * * *
13031946 TTGCAGTGGAATAGATTGAAGCTATAAATCTTATTTCCCTAAAG
1 TTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAG
* * * * *
13031990 TTGTAATGGAACAAATTAAAGCTACAAGTTACGAATCTTATCTCCCTGAAG
1 TTGCAGTGGAGCAGATT---G----AAGTTACAAATCTTATCTCCCTGAAG
* * *
13032041 TAGTAGTGGAGCAGGTTGAAG
1 TTGCAGTGGAGCAGATTGAAG
13032062 CGACAAACTC
Statistics
Matches: 229, Mismatches: 53, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
43 2 0.01
44 122 0.53
45 69 0.30
46 1 0.00
47 1 0.00
48 1 0.00
51 33 0.14
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (44 bp):
TTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAG
Found at i:13031966 original size:133 final size:133
Alignment explanation
Indices: 13031727--13031991 Score: 338
Period size: 133 Copynumber: 2.0 Consensus size: 133
13031717 TATAAGATTG
*
13031727 CAGTAGAGCAGATTAAAGCTATAAACTTTATCTCACTGAAGTTTGCAGTGGAGAAGATTGAAGTT
1 CAGTAGAGCAGATTAAAGCTACAAACTTTATCTCACTGAAGTTTGCAGTGGAGAAGATTGAAGTT
* * * * *
13031792 ATAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATTTTATTTCCCTAAA
66 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATA-CAAATCTTATTTCCCTAAA
13031857 GTTT
130 GTTT
* * * * *
13031861 CAGTAGAGCAGGTTGAAGTTACAAA-TCTTATCTCCCTGAAG-TTGCAGTGGAGCAGATTGAAGT
1 CAGTAGAGCAGATTAAAGCTACAAACT-TTATCTCACTGAAGTTTGCAGTGGAGAAGATTGAAGT
* * * * *
13031924 TACGAGT-TTCATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTATAAATCTTATTTCCCTAA
65 TACAAGTCTT-ATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATACAAATCTTATTTCCCTAA
13031988 AGTT
129 AGTT
13031992 GTAATGGAAC
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
132 21 0.19
133 58 0.51
134 34 0.30
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (133 bp):
CAGTAGAGCAGATTAAAGCTACAAACTTTATCTCACTGAAGTTTGCAGTGGAGAAGATTGAAGTT
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATACAAATCTTATTTCCCTAAAG
TTT
Found at i:13032049 original size:95 final size:95
Alignment explanation
Indices: 13031920--13032093 Score: 219
Period size: 95 Copynumber: 1.8 Consensus size: 95
13031910 GAGCAGATTG
* * * * * *
13031920 AAGTTACGAGTTTCATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTATAAA-TCTTATTTCC
1 AAGTTACGAATTTCATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCGACAAACTC-TA-TACC
13031984 -CTAAAGTTGTAATGGAACAAATTAAAGCTAC
64 TCTAAAGTTGTAATGGAACAAATTAAAGCTAC
* * *
13032015 AAGTTACGAATCTT-ATCTCCCTGAAGTAGTAGTGGAGCAGGTTGAAGCGACAAACTCTATACCT
1 AAGTTACGAAT-TTCATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCGACAAACTCTATACCT
13032079 CTAAAGTTGTAATGG
65 CTAAAGTTGTAATGG
13032094 GTTAGAATGA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
94 3 0.04
95 60 0.90
96 4 0.06
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (95 bp):
AAGTTACGAATTTCATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGCGACAAACTCTATACCTC
TAAAGTTGTAATGGAACAAATTAAAGCTAC
Found at i:13033710 original size:18 final size:17
Alignment explanation
Indices: 13033687--13033728 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
13033677 TTCTAGAAAC
13033687 TTTTATATT-TTATTTATT
1 TTTTAT-TTATTA-TTATT
13033705 TTTTATTTATTATTATT
1 TTTTATTTATTATTATT
13033722 TCTTTAT
1 T-TTTAT
13033729 CCTTTTACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTATTATTATT
Found at i:13045457 original size:22 final size:23
Alignment explanation
Indices: 13045419--13045466 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 23
13045409 CTTTGAATTT
13045419 TAAACATTAAATCAATA-ATTCAA
1 TAAACATTAAATCAATACATT-AA
13045442 TAAA-ATTAAAAT-AATACATTAA
1 TAAACATT-AAATCAATACATTAA
13045464 TAA
1 TAA
13045467 TATATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.31
Consensus pattern (23 bp):
TAAACATTAAATCAATACATTAA
Found at i:13045800 original size:16 final size:16
Alignment explanation
Indices: 13045766--13045799 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13045756 GTCATGCCAA
*
13045766 TTTCTTTTTCTTTTCT
1 TTTCTTTTTCTTTCCT
13045782 TTTCTTTTT-TTTCCT
1 TTTCTTTTTCTTTCCT
13045797 TTT
1 TTT
13045800 TGAAAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTCTTTTTCTTTCCT
Done.