Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 49 of 328
Found at i:14116963 original size:16 final size:15
Alignment explanation
Indices: 14116944--14117029 Score: 66
Period size: 16 Copynumber: 5.4 Consensus size: 15
14116934 TATTATATAA
*
14116944 ATTATTTTATATATGT
1 ATTATTTTATACAT-T
*
14116960 ATTA-TTTATATTATCT
1 ATTATTTTATA-CAT-T
*
14116976 ATTATTTGTCATAAATT
1 ATTATTT-T-ATACATT
* *
14116993 ATTATTATTTTACATC
1 ATTATT-TTATACATT
14117009 ATTATTTTATACATT
1 ATTATTTTATACATT
14117024 ATTATT
1 ATTATT
14117030 ATATCTTTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 11
0.76 0.09 0.14
Matches are distributed among these distances:
15 19 0.33
16 22 0.38
17 10 0.17
18 4 0.07
19 3 0.05
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (15 bp):
ATTATTTTATACATT
Found at i:14129197 original size:119 final size:119
Alignment explanation
Indices: 14128986--14129478 Score: 851
Period size: 119 Copynumber: 4.1 Consensus size: 119
14128976 TAAGCCATAG
*
14128986 CATAGCATATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
1 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
* * * *
14129051 AAGCAGATCCAAGGTGATTTGGTATTCTTGTGTTTACAAGGAGCAAATCGAGAA
66 AAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
14129105 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
1 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
14129170 AAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
66 AAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
* * *
14129224 CATAGCAGATTTGACTCTCAGATGTTCTCAGATATAACAGATCTAACCTTCAGATGTTTAGACTG
1 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
* * *
14129289 AAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACACATCGAGCA
66 AAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
*
14129343 CATAGCAGATTTGACTCTCAGATGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
1 CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
* *
14129408 AAGCAAGATCCAAGGTGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGA
66 AAGC-AGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
14129463 CATAGCAGATTTGACT
1 CATAGCAGATTTGACT
14129479 TTCAAATGTT
Statistics
Matches: 355, Mismatches: 18, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
119 294 0.83
120 61 0.17
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (119 bp):
CATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
AAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGA
Found at i:14131477 original size:15 final size:16
Alignment explanation
Indices: 14131459--14131496 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14131449 ATTATATAAA
*
14131459 ATTATTTATA-TATGT
1 ATTATTTATATTATCT
14131474 ATTATTTATATTATCT
1 ATTATTTATATTATCT
14131490 ATTATTT
1 ATTATTT
14131497 TTCATAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
ATTATTTATATTATCT
Found at i:14131539 original size:28 final size:28
Alignment explanation
Indices: 14131506--14131594 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 28
14131496 TTTCATAAAT
14131506 TATTATTATTTTACATCATTATTTTATA
1 TATTATTATTTTACATCATTATTTTATA
* *
14131534 TATTATTA--TTATATCTTTACTTGTTATA
1 TATTATTATTTTACATCATTA-TT-TTATA
*
14131562 TATTAATTATTTATACA-CATTGTCTTTATA
1 TATT-ATTATTT-TACATCATTAT-TTTATA
14131592 TAT
1 TAT
14131595 AAACTTTCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
26 9 0.18
27 2 0.04
28 17 0.35
29 4 0.08
30 9 0.18
31 5 0.10
32 3 0.06
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (28 bp):
TATTATTATTTTACATCATTATTTTATA
Found at i:14131542 original size:31 final size:30
Alignment explanation
Indices: 14131459--14131547 Score: 92
Period size: 31 Copynumber: 2.8 Consensus size: 30
14131449 ATTATATAAA
14131459 ATTA-TTTATATATGTATTATTTATATTATCT
1 ATTATTTTATATAT-TATTA-TTATATTATCT
* *
14131490 ATTATTTTTCATAAATTATTATTATTTTA-CAT
1 ATTA-TTTT-ATATATTATTATTATATTATC-T
14131522 CATTATTTTATATATTATTATTATAT
1 -ATTATTTTATATATTATTATTATAT
14131548 CTTTACTTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
31 20 0.41
32 12 0.24
33 12 0.24
34 5 0.10
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (30 bp):
ATTATTTTATATATTATTATTATATTATCT
Found at i:14132009 original size:12 final size:12
Alignment explanation
Indices: 14131992--14132016 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14131982 ATTAATGTAA
14131992 AATTATTTTGTT
1 AATTATTTTGTT
14132004 AATTATTTTGTT
1 AATTATTTTGTT
14132016 A
1 A
14132017 GTAATTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
AATTATTTTGTT
Found at i:14132044 original size:65 final size:66
Alignment explanation
Indices: 14131966--14132097 Score: 198
Period size: 65 Copynumber: 2.0 Consensus size: 66
14131956 TAGTGTTTTT
* *
14131966 TGTTTTGTAATTTTTTATTAATGTAAAATTATTTTGTTA-A-TTATTTTGTTAGTAATTTATG-T
1 TGTTTTGTAATTTTTTAGTAATGTAAAA-TATTTT-TTATAGTTATTTTGTTAGCAATTTATGAT
14132028 TAG
64 TAG
*
14132031 TGTTTTGTGATTTTTTAGTAATGTAAAATATTTTTTATAGTTATTTTGTTAGCAATTTATGATTA
1 TGTTTTGTAATTTTTTAGTAATGTAAAATATTTTTTATAGTTATTTTGTTAGCAATTTATGATTA
14132096 G
66 G
14132097 T
1 T
14132098 TTATAAATTG
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
63 3 0.05
64 7 0.11
65 46 0.75
66 5 0.08
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (66 bp):
TGTTTTGTAATTTTTTAGTAATGTAAAATATTTTTTATAGTTATTTTGTTAGCAATTTATGATTA
G
Found at i:14132130 original size:88 final size:91
Alignment explanation
Indices: 14132030--14132221 Score: 246
Period size: 98 Copynumber: 2.1 Consensus size: 91
14132020 ATTTATGTTA
* *
14132030 GTGTTTTGTGATTTTTTAGTAATGTAAA-ATATTT-T-TTATAGTTATTTTGTTAGCAATTTATG
1 GTGTTTCGTGATTTATTAGTAATGTAAATATATTTATGTTATAGTTATTTTGTTAGCAATTTATG
*
14132092 ATTAGTTTATAAATTGTTGGTGTTTT
66 ATTAGTTTATAAATTGTTAGTGTTTT
* * *
14132118 GTGTTTCGTGATTTATTAGTAATGTAAATTCTTTTTAAAAAAATGTTATAGTTATTTTGTTAGTA
1 GTGTTTCGTGATTTATTAGTAATGTAAA-TATATTT------ATGTTATAGTTATTTTGTTAGCA
14132183 ATTTATGATTAGTTTATAAATTGTTAGTGTTTT
59 ATTTATGATTAGTTTATAAATTGTTAGTGTTTT
14132216 GTGTTT
1 GTGTTT
14132222 TGTTGTAATA
Statistics
Matches: 88, Mismatches: 6, Indels: 10
0.85 0.06 0.10
Matches are distributed among these distances:
88 26 0.30
90 4 0.05
97 1 0.01
98 57 0.65
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.55
Consensus pattern (91 bp):
GTGTTTCGTGATTTATTAGTAATGTAAATATATTTATGTTATAGTTATTTTGTTAGCAATTTATG
ATTAGTTTATAAATTGTTAGTGTTTT
Found at i:14133867 original size:11 final size:11
Alignment explanation
Indices: 14133833--14133905 Score: 56
Period size: 13 Copynumber: 6.1 Consensus size: 11
14133823 TTTTCACAAA
14133833 TTATTATTATT
1 TTATTATTATT
*
14133844 TTACATCATTATT
1 TT--ATTATTATT
14133857 TTATTATTATT
1 TTATTATTATT
* *
14133868 ATATTTTTACTT
1 TTATTATTA-TT
*
14133880 GTATTATATATAT
1 TTATTAT-TAT-T
14133893 TTATTAATTATT
1 TTATT-ATTATT
14133905 T
1 T
14133906 ATATATATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
11 17 0.35
12 10 0.20
13 20 0.41
14 2 0.04
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (11 bp):
TTATTATTATT
Found at i:14133893 original size:21 final size:22
Alignment explanation
Indices: 14133861--14133913 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
14133851 ATTATTTTAT
* *
14133861 TATTAT-TATATTT-TTACTTG
1 TATTATATATATTTATTAATTA
14133881 TATTATATATATTTATTAATTA
1 TATTATATATATTTATTAATTA
14133903 T-TTATATATAT
1 TATTATATATAT
14133914 ATTGTTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 6 0.21
21 17 0.59
22 6 0.21
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
TATTATATATATTTATTAATTA
Found at i:14134028 original size:31 final size:30
Alignment explanation
Indices: 14133986--14134063 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 30
14133976 TATATTTAAA
*
14133986 TTATATTTTATTATATAACATTTATTATATTT
1 TTAT-TTTTATTATATAACACTTATTAT-TTT
* **
14134018 TTATTTTTATTCTATATTACTTATTATTTT
1 TTATTTTTATTATATAACACTTATTATTTT
*
14134048 TCT-TTTTTTTTATATA
1 T-TATTTTTATTATATA
14134064 TGTTATGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 15 0.38
31 20 0.51
32 4 0.10
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (30 bp):
TTATTTTTATTATATAACACTTATTATTTT
Found at i:14134121 original size:12 final size:12
Alignment explanation
Indices: 14134106--14134130 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14134096 TTATTTATGT
14134106 TTATATTATTCA
1 TTATATTATTCA
14134118 TTATATTATTCA
1 TTATATTATTCA
14134130 T
1 T
14134131 AATTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATATTATTCA
Found at i:14134220 original size:19 final size:19
Alignment explanation
Indices: 14134194--14134257 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 19
14134184 TAAATTATTA
14134194 ATTA-TTTATTTATTATGT
1 ATTATTTTATTTATTATGT
**
14134212 ATTATTTTA-TT-TTAAAT
1 ATTATTTTATTTATTATGT
*
14134229 AATATTTT-TTATATTATGT
1 ATTATTTTATT-TATTATGT
*
14134248 GTTATTTTAT
1 ATTATTTTAT
14134258 AAGTTCTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
17 12 0.35
18 7 0.21
19 14 0.41
20 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (19 bp):
ATTATTTTATTTATTATGT
Found at i:14138093 original size:14 final size:16
Alignment explanation
Indices: 14138074--14138110 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
14138064 CGATATCCTT
14138074 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
14138088 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
14138104 TTT-CATC
1 TTTGCATC
14138111 ACATCGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:14138110 original size:15 final size:15
Alignment explanation
Indices: 14138074--14138123 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
14138064 CGATATCCTT
14138074 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
14138088 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
* *
14138104 TTT-CATCACAT-CG
1 TTTGCATCTCATGCA
14138117 TTTGCAT
1 TTTGCAT
14138124 TCAAAGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 10 0.32
15 11 0.35
16 6 0.19
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:14146668 original size:204 final size:205
Alignment explanation
Indices: 14146105--14146805 Score: 1034
Period size: 205 Copynumber: 3.4 Consensus size: 205
14146095 TAGGCCACAG
* * * *
14146105 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCTAGGATGGTTTGGTATCCTTGTA
1 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
*
14146170 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAAACT
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
* * * * * **
14146235 AAGATGATTTGACATATCTGAATTGTCAGAGAATAAATCGAAGTCTGGCATCTCCACTTCAATGG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGAT-G
14146300 AA-AGCAGATA
195 AAGAGCAGATA
* * * * * * * * *
14146310 CATAGCAGATCTGAACTTTAGACGATTA-GATTGAAGCAAGATCCAAGA-GATTTGGCATCCTTG
1 CATAGCAGATCTCACCTTCAGATGTTTATG-CTGAAGC-AGATCCAAGATGGTTTGGTACCCTTG
* * *
14146373 TGTTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTCACGTGCTTACGATGAAGCAAAT
64 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAAT
14146438 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGAT
129 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGAT
14146503 GAAGAGCAGATA
194 GAAGAGCAGATA
* * *
14146515 CATAGCAGATCTCGCCTTCGGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGGG
1 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
* *
14146580 CTTACAAGGAAC-AATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTAC-ACTGAAGTAAATC
66 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGA-TGAAGCAAATC
* *
14146643 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACGAATCGAAGTCTGGCTTCTTCACTTTGATG
130 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGATG
*
14146708 GAGAGCAGATA
195 AAGAGCAGATA
*
14146719 CATAGCAGATCTCACCTTCAGATGTTTATGCCGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
1 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
14146784 CTTACAAGGAACAAATCGAAGA
66 CTTACAAGGAACAAATCGAAGA
14146806 AGTAGATTTG
Statistics
Matches: 443, Mismatches: 46, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
203 1 0.00
204 205 0.46
205 228 0.51
206 9 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTTGTG
CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCT
AAGATGATTTGGCATCTCTGTATTGTCAGAGAATGAATCGAAGTCTGGCATCTTCACTTTGATGA
AGAGCAGATA
Found at i:14148634 original size:21 final size:22
Alignment explanation
Indices: 14148591--14148655 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 22
14148581 ACATCATTAT
14148591 TTTATT-ATTATTATTAT-TATA
1 TTTATTAATTA-TATTATATATA
* *
14148612 TTT-TTACTTGTATTATATATA
1 TTTATTAATTATATTATATATA
14148633 TTTATTAATTAT-TTATATATA
1 TTTATTAATTATATTATATATA
14148654 TT
1 TT
14148656 GTTTTTACAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
20 8 0.22
21 23 0.62
22 6 0.16
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTATTAATTATATTATATATA
Found at i:14148767 original size:31 final size:30
Alignment explanation
Indices: 14148725--14148802 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 30
14148715 TATATTTAAA
*
14148725 TTATATTTTATTATATAACATTTATTATATTT
1 TTAT-TTTTATTATATAACACTTATTAT-TTT
* **
14148757 TTATTTTTATTCTATATTACTTATTATTTT
1 TTATTTTTATTATATAACACTTATTATTTT
*
14148787 TCT-TTTTTTTTATATA
1 T-TATTTTTATTATATA
14148803 TGTTATGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 15 0.38
31 20 0.51
32 4 0.10
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (30 bp):
TTATTTTTATTATATAACACTTATTATTTT
Found at i:14148867 original size:12 final size:12
Alignment explanation
Indices: 14148814--14148869 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 12
14148804 GTTATGTATA
14148814 TCATATATATTA-
1 TCAT-TATATTAT
14148826 TCTATTATATTAT
1 TC-ATTATATTAT
*
14148839 TTATGTTTATATTAT
1 TCA---TTATATTAT
14148854 TCATTATATTAT
1 TCATTATATTAT
14148866 TCAT
1 TCAT
14148870 AATTTTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 23 0.62
13 3 0.08
15 11 0.30
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (12 bp):
TCATTATATTAT
Found at i:14150204 original size:96 final size:98
Alignment explanation
Indices: 14150104--14150285 Score: 282
Period size: 98 Copynumber: 1.9 Consensus size: 98
14150094 TTTAAAAATG
*
14150104 TTATAGTTATTTTGTTAGTAATTTATGATTA-GTT-TATAAATTGTTAGTATTTAGCT-TAGGGT
1 TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTATTTA-ATGTAGGGT
14150166 TTTATGATTTTT-TATAATGTAATTTAAAAAAAAA
65 TTTATGATTTTTAT-TAATGTAATTTAAAAAAAAA
* *
14150200 TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAATGTAGTGTT
1 TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTATTTAATGTAGGGTT
*
14150265 TTGTGATTTTTATTAATGTAA
66 TTATGATTTTTATTAATGTAA
14150286 ATTTTTTATA
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
96 31 0.40
97 4 0.05
98 42 0.54
99 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.15, T:0.53
Consensus pattern (98 bp):
TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTATTTAATGTAGGGTT
TTATGATTTTTATTAATGTAATTTAAAAAAAAA
Found at i:14150372 original size:27 final size:27
Alignment explanation
Indices: 14150329--14150388 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
14150319 AATTTTAATT
** * *
14150329 GATAGGAGTCATTAGTGGCGCCTATCA
1 GATAGGAGTCACCAGTGGCACCTACCA
14150356 GATAGGAGTCACCAGTGGCACCTACCA
1 GATAGGAGTCACCAGTGGCACCTACCA
*
14150383 AATAGG
1 GATAGG
14150389 CACCACCTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (27 bp):
GATAGGAGTCACCAGTGGCACCTACCA
Found at i:14151543 original size:39 final size:39
Alignment explanation
Indices: 14151477--14151551 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
14151467 CATTTGTACA
* * *
14151477 AAAAAACGCTGCTATAGATTGAACATTAGTGGCGTTTTC
1 AAAAAACGCTGCTAAAGATCGAACATTAGCGGCGTTTTC
*
14151516 AAAAAACG-TAGCTAAAGATCGAGCATTAGCGGCGTT
1 AAAAAACGCT-GCTAAAGATCGAACATTAGCGGCGTT
14151552 AGAATGTCGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.03
39 30 0.97
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (39 bp):
AAAAAACGCTGCTAAAGATCGAACATTAGCGGCGTTTTC
Found at i:14151819 original size:116 final size:115
Alignment explanation
Indices: 14151608--14151883 Score: 313
Period size: 116 Copynumber: 2.4 Consensus size: 115
14151598 CTTTAGTGTT
* * * *** * * *
14151608 ATTAGCGGCG-TTTTT-ATAAAAGCACCGCTATAGATTGACCATTAGCGGTGCTTTTATAAAAAC
1 ATTAACGGCGCTTTTTGA-AAAA-CACCGCTATAGATCGAGCATTAGCGGCATTTTTTTAGAAGC
* ** * *
14151671 GCCGTAAAATAATTCATCAACACGTTGTCTTTTTTTGTTGTGCCTTAGAGGC
64 GCCGCAAAATAATTCATCAACACGACGCCTTTTTTTGTTGAGCCTTAGAGGC
** * *
14151723 ATTTAACGGCGCTTTTTGACCAACGCCGCTATAGGTCGAGCATTAGCGGCATTTTTTTAGAAGCG
1 A-TTAACGGCGCTTTTTGAAAAACACCGCTATAGATCGAGCATTAGCGGCATTTTTTTAGAAGCG
* *
14151788 CCGCAAAATATTTCATCAACACGACGCCTTTTTTTGTTGAGCCTTAGTGGC
65 CCGCAAAATAATTCATCAACACGACGCCTTTTTTTGTTGAGCCTTAGAGGC
* *
14151839 ATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGAGCTTTAG
1 ATTAACGGCGCTTTTTGAAAAACACCGCTATAGATCGAGCATTAG
14151884 ATTACTGATA
Statistics
Matches: 132, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
115 39 0.30
116 85 0.64
117 7 0.05
118 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (115 bp):
ATTAACGGCGCTTTTTGAAAAACACCGCTATAGATCGAGCATTAGCGGCATTTTTTTAGAAGCGC
CGCAAAATAATTCATCAACACGACGCCTTTTTTTGTTGAGCCTTAGAGGC
Found at i:14154650 original size:50 final size:51
Alignment explanation
Indices: 14154573--14154701 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
14154563 GACCATGGAA
14154573 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GAAAAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGAAAAA-TG
*
14154624 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGAAAAATG
* * *
14154674 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
14154702 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 43 0.60
51 29 0.40
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGAAAAATG
Found at i:14154715 original size:31 final size:31
Alignment explanation
Indices: 14154677--14154856 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
14154667 ACAAATGACA
* *
14154677 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
***
14154708 AGTGAAAAGTGGTAGCTTTTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
14154739 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
14154770 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
14154801 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
14154832 AGTGAATAGTGGTAGCTCCAGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
14154857 AAGTGACAAG
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 138 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:14154950 original size:46 final size:46
Alignment explanation
Indices: 14154883--14155003 Score: 163
Period size: 46 Copynumber: 2.6 Consensus size: 46
14154873 GTGATTTCCT
* * *
14154883 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTAT-G
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGAT-TCG
*
14154929 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATTCG
* * *
14154975 TGTAAGACCATAGCTGGGCTATGGCATCA
1 TATAAGACCATATCTGGGATATGGCATCA
14155004 TTATGTGAAG
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 1 0.01
46 66 0.99
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATTCG
Found at i:14156890 original size:13 final size:14
Alignment explanation
Indices: 14156874--14156902 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14156864 TTATAGATAT
14156874 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
14156887 TTATAATGGTTTAA
1 TTATAATGGTTTAA
14156901 TT
1 TT
14156903 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:14157655 original size:31 final size:31
Alignment explanation
Indices: 14157619--14157684 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
14157609 TTTATTTTTT
*
14157619 ATGCTACATTTGTTGTTTTTGGTTGGATTCA
1 ATGCTACATTTGCTGTTTTTGGTTGGATTCA
* * *
14157650 ATGCTATATTTGCTGTTTTTTGTTGGATTTA
1 ATGCTACATTTGCTGTTTTTGGTTGGATTCA
14157681 ATGC
1 ATGC
14157685 AGGAAGGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.09, G:0.21, T:0.53
Consensus pattern (31 bp):
ATGCTACATTTGCTGTTTTTGGTTGGATTCA
Found at i:14159709 original size:55 final size:52
Alignment explanation
Indices: 14159629--14159734 Score: 176
Period size: 55 Copynumber: 2.0 Consensus size: 52
14159619 TGGCACAATC
14159629 TTTTTTTTCTTTTTTTTTGGGGGGGATAATTTAAATGGTTATAAATGAAATT
1 TTTTTTTTCTTTTTTTTTGGGGGGGATAATTTAAATGGTTATAAATGAAATT
*
14159681 TTTTTCTTTTTTTTTTTTTGGGGGGGGGATAATTTAAATGGTTATAAATGAAAT
1 TTTTT-TTTCTTTTTTTTT--GGGGGGGATAATTTAAATGGTTATAAATGAAAT
14159735 CATCATGAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
52 5 0.10
53 12 0.24
55 33 0.66
ACGTcount: A:0.25, C:0.02, G:0.21, T:0.53
Consensus pattern (52 bp):
TTTTTTTTCTTTTTTTTTGGGGGGGATAATTTAAATGGTTATAAATGAAATT
Found at i:14170688 original size:2 final size:2
Alignment explanation
Indices: 14170683--14170712 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
14170673 CTATTATACG
*
14170683 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14170713 ACAAAGTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14172181 original size:131 final size:130
Alignment explanation
Indices: 14171992--14172237 Score: 343
Period size: 131 Copynumber: 1.9 Consensus size: 130
14171982 AAATTTTATT
* * * *
14171992 AAAACGAAGGTAATACTCGGTGCTTGGCAATTCGGGAATCGTGCCCCATCGTGTTGGGTTGCGAT
1 AAAACGAAGGTAATACTCGATGCTTGCCAATTCGGGAATCGTGCCCCATCGTGCTGGGTTGCAAT
* * *
14172057 TT-CTCGTTTGTTCAAAATAATCAAATATTCGT-TTGAAATTTCACTCATGTCTTTAAAAATTCT
66 TTCCT-GTTTATTCAAAATAATCAAATATTCCTCTAG-AATTTCACTCATGTCTTTAAAAATTCT
14172120 TC
129 TC
* * * *
14172122 AAAACGAAGGTAATATTCGATGTTTGCCCATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAA
1 AAAACGAAGGTAATACTCGATGCTTGCCAATTC-GGGAATCGTGCCCCATCGTGCTGGGTTGCAA
*
14172187 TTTCCTGTTTATTCAAAATAATCGAATATTCCTCTAGAATTTCACTCATGT
65 TTTCCTGTTTATTCAAAATAATCAAATATTCCTCTAGAATTTCACTCATGT
14172238 TCTCTAAATT
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
130 28 0.28
131 69 0.68
132 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
AAAACGAAGGTAATACTCGATGCTTGCCAATTCGGGAATCGTGCCCCATCGTGCTGGGTTGCAAT
TTCCTGTTTATTCAAAATAATCAAATATTCCTCTAGAATTTCACTCATGTCTTTAAAAATTCTTC
Found at i:14173193 original size:31 final size:31
Alignment explanation
Indices: 14173158--14173219 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
14173148 TTAAATTAGA
14173158 AAATTTATTTTTTTATATTTTATTTTACATG
1 AAATTTATTTTTTTATATTTTATTTTACATG
14173189 AAATTTATTTTTTTATATTTTATTTTACATG
1 AAATTTATTTTTTTATATTTTATTTTACATG
14173220 CGTAATGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (31 bp):
AAATTTATTTTTTTATATTTTATTTTACATG
Found at i:14175574 original size:132 final size:132
Alignment explanation
Indices: 14175337--14175576 Score: 372
Period size: 132 Copynumber: 1.8 Consensus size: 132
14175327 TCTCGCTTTG
* * * * *
14175337 GAAAACGTGAATGAAATTCCAAAGGGATATTCGATTATTTTGCACAAACAAGAAATTACAACCCA
1 GAAAACATGAACGAAATTCCAAAGAGACATCCGATTATTTTGCACAAACAAGAAATTACAACCCA
* *
14175402 GCACGATAGGGCACGATTCCCCGAATTGCCGAACGTCGAACATTTCCTTCGTTTTAAATTTTTTT
66 GCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTTCCTTCGTTTTAAATTTTTTT
14175467 TA
131 TA
* ** *
14175469 GAAAACATGAACGAAATTCTAAAGAGACATCCGATTATTTTGGGCAAACAAGAAATTGCAACCCA
1 GAAAACATGAACGAAATTCCAAAGAGACATCCGATTATTTTGCACAAACAAGAAATTACAACCCA
*
14175534 GCACGATAGGGCACGATTCCCCGAATTGCTAAACATCGAACAT
66 GCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACAT
14175577 CATCTCCGTT
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
132 96 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (132 bp):
GAAAACATGAACGAAATTCCAAAGAGACATCCGATTATTTTGCACAAACAAGAAATTACAACCCA
GCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTTCCTTCGTTTTAAATTTTTTT
TA
Found at i:14175886 original size:3 final size:3
Alignment explanation
Indices: 14175878--14175939 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
14175868 ACAAACAATG
14175878 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14175926 ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
14175940 GCAATGATAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14176583 original size:3 final size:3
Alignment explanation
Indices: 14176575--14176658 Score: 161
Period size: 3 Copynumber: 28.3 Consensus size: 3
14176565 ATATATTAGG
14176575 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14176623 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
14176659 GAAAAATCGA
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.03
3 78 0.98
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14178960 original size:20 final size:20
Alignment explanation
Indices: 14178894--14178961 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 20
14178884 AGGTGCCAAA
*
14178894 ATAATTATTTTAGAAATTTTT
1 ATAATTTTTTTA-AAATTTTT
* * *
14178915 -TTA-TTCTTTAGAATTTTT
1 ATAATTTTTTTAAAATTTTT
*
14178933 A-ACTTTTTTTTAAAATTTTT
1 ATA-ATTTTTTTAAAATTTTT
14178953 ATAATTTTT
1 ATAATTTTT
14178962 AGAAATTATT
Statistics
Matches: 34, Mismatches: 9, Indels: 9
0.65 0.17 0.17
Matches are distributed among these distances:
18 7 0.21
19 5 0.15
20 21 0.62
21 1 0.03
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (20 bp):
ATAATTTTTTTAAAATTTTT
Found at i:14178967 original size:19 final size:18
Alignment explanation
Indices: 14178901--14178990 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 18
14178891 AAAATAATTA
*
14178901 TTTTAGAAATTTTTTTAT
1 TTTTAGAAATTTTTTAAT
14178919 TCTTTAG-AA-TTTTTAACTTTT
1 T-TTTAGAAATTTTTTAA----T
14178940 TTTTA-AAATTTTTATAAT
1 TTTTAGAAATTTTT-TAAT
14178958 TTTTAGAAATTATTTTAAT
1 TTTTAGAAATT-TTTTAAT
*
14178977 TATTT-GTAATTTTT
1 T-TTTAGAAATTTTT
14178991 GTTGAAGAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 22
0.71 0.02 0.27
Matches are distributed among these distances:
17 6 0.10
18 12 0.20
19 20 0.34
20 12 0.20
21 6 0.10
22 3 0.05
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (18 bp):
TTTTAGAAATTTTTTAAT
Found at i:14179154 original size:31 final size:30
Alignment explanation
Indices: 14179115--14179193 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
14179105 AATTTAACTA
* *
14179115 TAAC-TAAAAATTCGAATTACTTATTTGAAT
1 TAACTTAAAAATT-GAATTACTTAATTCAAT
* *
14179145 TAACTTAAAAAATTGAATAATTTAATTCAAT
1 TAACTT-AAAAATTGAATTACTTAATTCAAT
*
14179176 TAACTTAAAATTTGAATT
1 TAACTTAAAAATTGAATT
14179194 TTTAAAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 14 0.34
31 20 0.49
32 7 0.17
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.41
Consensus pattern (30 bp):
TAACTTAAAAATTGAATTACTTAATTCAAT
Found at i:14180553 original size:6 final size:6
Alignment explanation
Indices: 14180545--14180586 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
14180535 TATATATATT
* *
14180545 TTTTAT TTTTAA TTAT-A TTTTAA TTTTAA TTTTAA TTTTAA T
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA T
14180587 ATAATCAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:14180647 original size:40 final size:39
Alignment explanation
Indices: 14180603--14180682 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 39
14180593 AATTTTTATT
14180603 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
1 ATATATTTTCAATTTGTGTATTG-TTTAAGAATTGTTTTA
** * * * *
14180643 ATATATTTTTTATTTGTTTCTTGTTTAATATTTGTTTTA
1 ATATATTTTCAATTTGTGTATTGTTTAAGAATTGTTTTA
14180682 A
1 A
14180683 ATGTATTTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 15 0.44
40 19 0.56
ACGTcount: A:0.25, C:0.03, G:0.10, T:0.62
Consensus pattern (39 bp):
ATATATTTTCAATTTGTGTATTGTTTAAGAATTGTTTTA
Found at i:14183659 original size:131 final size:131
Alignment explanation
Indices: 14183364--14183677 Score: 321
Period size: 131 Copynumber: 2.4 Consensus size: 131
14183354 TTGCCTCACC
* * * * * * *
14183364 TTAGAAAATACGAGTGAAATTCCGAAGGGATCTTCAATTGTTTTGAGCAAAAGAGAAAGCGCAAC
1 TTAGAAAACACGAGTAAAATTCTGAAGGGATATTCGATTGTTTTGAGCAAACGAGAAAGCACAAC
* * * *
14183429 CCAGCACGATAGGACTCGATTCTCAAATCGTCAAACATCGAATATTGCCTCCGTTTTGCAAGGTT
66 CCAGCACGATAGGACTCGATTCCCAAATCATCAAACACCGAATATTGCCTCCGTTTTGAAAGGTT
14183494 T
131 T
* * * * * * *
14183495 TTA-ATAAACATGAATGAAAA-CCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACA
1 TTAGA-AAACACGAGT-AAAATTCTGAAGGGATATTCGATTGTTTTGAGCAAACGAGAAAGCACA
* * * * * *
14183558 ACCCAGCATGATAGGGCAT-GATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTT-AAAG
64 ACCCAGCACGATAGGAC-TCGATTCCCAAATCATCAAACACCGAATATTGCCTCCGTTTTGAAAG
14183621 GATTT
128 G-TTT
* * *
14183626 TTAGAAGACACGAGTAAAATTTTGAAGGGATATTCGATTATTTTGAGCAAAC
1 TTAGAAAACACGAGTAAAATTCTGAAGGGATATTCGATTGTTTTGAGCAAAC
14183678 ACGAAATTGT
Statistics
Matches: 144, Mismatches: 33, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
130 9 0.06
131 130 0.90
132 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (131 bp):
TTAGAAAACACGAGTAAAATTCTGAAGGGATATTCGATTGTTTTGAGCAAACGAGAAAGCACAAC
CCAGCACGATAGGACTCGATTCCCAAATCATCAAACACCGAATATTGCCTCCGTTTTGAAAGGTT
T
Found at i:14184682 original size:2 final size:2
Alignment explanation
Indices: 14184675--14184705 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14184665 AAGTGAATTA
14184675 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14184706 AATTTAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14185148 original size:24 final size:24
Alignment explanation
Indices: 14185094--14185151 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 24
14185084 TAATAGCATG
* * * *
14185094 GCATAAAAAACAAACAACATAATA
1 GCATTAAAAACAAACAAAAGAAAA
*
14185118 GCGATTAAAAAGAAACAAAAGAAAA
1 GC-ATTAAAAACAAACAAAAGAAAA
14185143 GCATTAAAA
1 GCATTAAAA
14185152 TAATATACAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.66, C:0.12, G:0.10, T:0.12
Consensus pattern (24 bp):
GCATTAAAAACAAACAAAAGAAAA
Found at i:14186418 original size:15 final size:15
Alignment explanation
Indices: 14186378--14186419 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14186368 TTTATTGGAC
*
14186378 TGTTAATGTATTTTT
1 TGTTTATGTATTTTT
14186393 TGTTTAT-TATTTTT
1 TGTTTATGTATTTTT
14186407 TGGTTT-TGTATTT
1 T-GTTTATGTATTT
14186420 ATACGGGCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (15 bp):
TGTTTATGTATTTTT
Found at i:14186782 original size:44 final size:44
Alignment explanation
Indices: 14186689--14187216 Score: 691
Period size: 44 Copynumber: 12.0 Consensus size: 44
14186679 AAGGTTCGTC
* * *
14186689 ATCTTCGATTTGCTCTTTGTCAATCACAGAGACGCCAAATCTG-T
1 ATCTTCGATCTGCTCTCTGCCAAT-ACAGAGACGCCAAATCTGCT
* * *
14186733 CATCTTCGATCTGCTCTCCGCCAATACAGAGACGCTAAATTTGCT
1 -ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* * *
14186778 ATCTTTGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* * *
14186822 ATTTTTGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTACT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* *
14186866 ATCTTCGATCTGCTCTTTGCCAATACAGAGATGCCAAATCTGCT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* * *
14186910 ATCTTTGATCTGCTCTCTGCCAATACAGAGACACCAGATCTGCT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
14186954 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* *
14186998 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCTAAATCTACT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* ** *
14187042 ATCTTCGATCTGCCCTCTGCCAATATGGAGATGCCAAATCTGCT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* * * * *
14187086 ATCTTCGATCTGTTCCCCGCCAATACAGAGATGTCAAATCTGCT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
* * *
14187130 ATCTTCGATCTGCCCTCTGCCAGTACAGAGATGCCCAAATCTGCT
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACG-CCAAATCTGCT
* * * * *
14187175 ATCTTC-ATCTACTCTCCGCTAATACAAAGATGCCAAATCTGC
1 ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGC
14187217 AGGATTCGCC
Statistics
Matches: 427, Mismatches: 54, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
43 10 0.02
44 380 0.89
45 37 0.09
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (44 bp):
ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT
Found at i:14200016 original size:2 final size:2
Alignment explanation
Indices: 14200009--14200041 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14199999 AAGTGAATTA
14200009 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14200042 AATTTAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14200486 original size:24 final size:24
Alignment explanation
Indices: 14200432--14200489 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 24
14200422 TAATAGCATG
* * * *
14200432 GCATAAAAAACAAACAACATAATA
1 GCATTAAAAACAAACAAAAGAAAA
*
14200456 GCGATTAAAAAGAAACAAAAGAAAA
1 GC-ATTAAAAACAAACAAAAGAAAA
14200481 GCATTAAAA
1 GCATTAAAA
14200490 TAATATACAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.66, C:0.12, G:0.10, T:0.12
Consensus pattern (24 bp):
GCATTAAAAACAAACAAAAGAAAA
Found at i:14201322 original size:11 final size:12
Alignment explanation
Indices: 14201306--14201347 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
14201296 CCTTCTTTGC
14201306 TTTGTA-TTGTT
1 TTTGTATTTGTT
*
14201317 TTTGTATTCTCTT
1 TTTGTATT-TGTT
14201330 TTTCGTATTTGTT
1 TTT-GTATTTGTT
14201343 TTTGT
1 TTTGT
14201348 TGCCTTTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 6 0.23
12 3 0.12
13 12 0.46
14 5 0.19
ACGTcount: A:0.07, C:0.07, G:0.14, T:0.71
Consensus pattern (12 bp):
TTTGTATTTGTT
Found at i:14201765 original size:15 final size:15
Alignment explanation
Indices: 14201724--14201766 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
14201714 TTTTATTGGA
*
14201724 TTGTTAATGTATTTT
1 TTGTTTATGTATTTT
14201739 TTGTTTAT-TATTTT
1 TTGTTTATGTATTTT
14201753 TTGGTTT-TGTATTT
1 TT-GTTTATGTATTT
14201767 ATATGGGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (15 bp):
TTGTTTATGTATTTT
Found at i:14201946 original size:29 final size:30
Alignment explanation
Indices: 14201905--14201966 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
14201895 GTATTTATAG
*
14201905 TATTTTCTCATATTATA-ATCATGTTTAAAA
1 TATTTTATCATATTATATAT-ATGTTTAAAA
* *
14201935 TATTTTAT-ATATTTTATATTTGTTTAAAA
1 TATTTTATCATATTATATATATGTTTAAAA
14201964 TAT
1 TAT
14201967 ATTTGTATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.56
Consensus pattern (30 bp):
TATTTTATCATATTATATATATGTTTAAAA
Found at i:14202022 original size:2 final size:2
Alignment explanation
Indices: 14202015--14202040 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14202005 GAAGGTCTCA
14202015 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14202041 TATTAAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14203183 original size:13 final size:12
Alignment explanation
Indices: 14203160--14203200 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
14203150 TCTAGTAGGA
14203160 TTTTAGTTAATT
1 TTTTAGTTAATT
14203172 TTTTAGGTTAA-T
1 TTTTA-GTTAATT
14203184 TTTTAG-TATATT
1 TTTTAGTTA-ATT
14203196 TTTTA
1 TTTTA
14203201 AGAATTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.08
11 2 0.08
12 17 0.65
13 5 0.19
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (12 bp):
TTTTAGTTAATT
Found at i:14206831 original size:21 final size:23
Alignment explanation
Indices: 14206781--14206831 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 23
14206771 ACAATAATGT
* *
14206781 ACATAGCATGATATAGAATAACC
1 ACATAGCAAGATATAGAATAACA
14206804 A-AT-GCAAGATATA-AA-AACA
1 ACATAGCAAGATATAGAATAACA
14206823 ACATAGCAA
1 ACATAGCAA
14206832 TTAGAAGCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
19 4 0.17
20 4 0.17
21 13 0.54
22 2 0.08
23 1 0.04
ACGTcount: A:0.55, C:0.16, G:0.12, T:0.18
Consensus pattern (23 bp):
ACATAGCAAGATATAGAATAACA
Found at i:14207433 original size:2 final size:2
Alignment explanation
Indices: 14207426--14207458 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14207416 AAGGGCATTA
*
14207426 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14207459 AATTTAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:14207733 original size:2 final size:2
Alignment explanation
Indices: 14207726--14207764 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
14207716 ATGTGCCGAA
14207726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14207765 AATAAAGGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14208813 original size:6 final size:6
Alignment explanation
Indices: 14208799--14208832 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
14208789 AGAAAGAAGG
14208799 AAAAA- AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
14208833 ATATACAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:14210758 original size:17 final size:18
Alignment explanation
Indices: 14210736--14210770 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14210726 GATATGATAC
*
14210736 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
14210753 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
14210771 CGGGAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:14211083 original size:19 final size:19
Alignment explanation
Indices: 14211055--14211145 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
14211045 AATCATATCT
* *
14211055 TCTAATATTGCATATTATA
1 TCTAAGATTGCATATCATA
14211074 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
14211092 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
14211109 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14211128 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
14211146 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 36 0.54
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14211152 original size:36 final size:35
Alignment explanation
Indices: 14211071--14211153 Score: 107
Period size: 36 Copynumber: 2.3 Consensus size: 35
14211061 ATTGCATATT
*
14211071 ATATCTAAGATTGCAATCATATCTAAGATTGTATC
1 ATATCGAAGATTGCAATCATATCTAAGATTGTATC
*
14211106 ATATCTAAGATTGCATATCATATCTAAGATTGCATATC
1 ATATCGAAGATTGCA-ATCATATCTAAGATTG--TATC
14211144 AT-T-GAAGATT
1 ATATCGAAGATT
14211154 ATATTTCCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
35 15 0.34
36 22 0.50
37 1 0.02
38 6 0.14
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.37
Consensus pattern (35 bp):
ATATCGAAGATTGCAATCATATCTAAGATTGTATC
Found at i:14211609 original size:44 final size:45
Alignment explanation
Indices: 14211493--14211692 Score: 249
Period size: 45 Copynumber: 4.5 Consensus size: 45
14211483 GGAAGGTGAT
* * * **
14211493 ATCTGCTATCTTTGATCTGCTTCAGGTCTAATACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
*
14211538 ATCTGTTATCTTCGATCTACTCCCCGTCTAATACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
* * **
14211583 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
* * **
14211627 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
* *
14211672 ATCTGTCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
14211693 TCGATGTAAA
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 39 0.29
45 96 0.71
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
Found at i:14211754 original size:92 final size:78
Alignment explanation
Indices: 14211706--14211919 Score: 355
Period size: 75 Copynumber: 2.8 Consensus size: 78
14211696 ATGTAAACAC
*
14211706 ATGAAGGTCAGATCTGCTATGTCTTCGATATGCTCCCCGTCTAATACAGAGATGCCAAATCAT-T
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
14211770 TGGATCTGCTTCA
66 TGGATCTGCTTCA
14211783 ATGAAGGTCAGATCTG--ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
14211846 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* **
14211859 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGT-TGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATACAGAGATGCCAAATC
14211920 TATTTCTTCG
Statistics
Matches: 129, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
75 44 0.34
76 30 0.23
77 17 0.13
78 38 0.29
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:14212128 original size:78 final size:78
Alignment explanation
Indices: 14212000--14212277 Score: 392
Period size: 73 Copynumber: 3.7 Consensus size: 78
14211990 GTGAAAGCCA
*
14212000 AATCTGCTATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
1 AATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
14212064 TCAATGAAGGTCC
66 TCAATGAAGGTCC
* * * *
14212077 AATCTGTTATGTCTTCGATCTTCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCT
1 AATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
*
14212142 TCAATGAAGGTCA
66 TCAATGAAGGTCC
14212155 AATCTG---T-TCTTC-ATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
1 AATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
14212215 TCAATGAAGGT-C
66 TCAATGAAGGTCC
* * * **
14212227 AGATCTGCTATGT-TTCGATCTACTCTCCATCGAATATGGAGATGCCAAATC
1 A-ATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATC
14212278 TGTTTCTTTG
Statistics
Matches: 181, Mismatches: 13, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
72 1 0.01
73 61 0.34
74 5 0.03
75 1 0.01
76 4 0.02
77 52 0.29
78 57 0.31
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (78 bp):
AATCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
TCAATGAAGGTCC
Found at i:14212379 original size:356 final size:360
Alignment explanation
Indices: 14211706--14212422 Score: 1191
Period size: 356 Copynumber: 2.0 Consensus size: 360
14211696 ATGTAAACAC
14211706 ATGAAGGTCAGATCTGCTATGTCTTCGATATGCTCCCCGTCTAATACAGAGATGCCAAATCATTT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATATGCTCCCCGTCTAATACAGAGATGCCAAATCATTT
* * *
14211771 GGATCTGCTTCAATGAAGGTCAGATCTGATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGC
66 AGATCTGCTTCAATGAAGGTCAAATCTGATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGC
* * *
14211836 CAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTTG
131 CAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCATCG
14211901 AATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATC
196 AATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATC
14211966 TTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCC-CGTC
261 TTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTCGTC
*
14212030 TAA-TACAGAGATGCCAAATCATCTTGGATCTGCTTCA
326 -AACTA-AG-GATGCCAAATCATCTTGGATCTACTTCA
* * *
14212067 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTTCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATATGCTCCCCGTCTAATACAGAGATGCCAAATCAT-
14212131 TTAGATCTGCTTCAATGAAGGTCAAATCTG-T-TCTTC-ATCTGCTCCCCATCTAATACAGAGAT
64 TTAGATCTGCTTCAATGAAGGTCAAATCTGATGTCTTCGATCTGCTCCCCATCTAATACAGAGAT
14212193 GCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGT-TTCGATCTACTCTCCAT
129 GCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCAT
* *
14212257 CGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACA-TACA-AGATGCCAAATCA
194 CGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCA
* *
14212320 TCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTTGATCTGCTCCTTG
259 TCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTCG
14212385 TCAACGTAAGGATGCCAAATCATCTTGGATCTACTTCA
324 TCAAC-TAAGGATGCCAAATCATCTTGGATCTACTTCA
14212423 TGTGAAAACA
Statistics
Matches: 337, Mismatches: 14, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
356 103 0.31
357 9 0.03
358 60 0.18
359 72 0.21
360 5 0.01
361 58 0.17
362 30 0.09
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (360 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATATGCTCCCCGTCTAATACAGAGATGCCAAATCATTT
AGATCTGCTTCAATGAAGGTCAAATCTGATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGC
CAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCATCG
AATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATC
TTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTCGTC
AACTAAGGATGCCAAATCATCTTGGATCTACTTCA
Found at i:14218967 original size:41 final size:41
Alignment explanation
Indices: 14218910--14218991 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
14218900 TAACATAAGC
* *
14218910 CTTGTGACCTTGAATCCTCGGGCAACGCAGTAAAGTCGTAT
1 CTTGTAACCCTGAATCCTCGGGCAACGCAGTAAAGTCGTAT
14218951 CTTGTAACCCTGAATCCTCGGGCAACGCAGTAAAGTCGTAT
1 CTTGTAACCCTGAATCCTCGGGCAACGCAGTAAAGTCGTAT
14218992 ACTCCTCTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CTTGTAACCCTGAATCCTCGGGCAACGCAGTAAAGTCGTAT
Found at i:14220588 original size:17 final size:17
Alignment explanation
Indices: 14220566--14220598 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14220556 GATATGATAC
14220566 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
14220583 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
14220599 AATTCGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:14220599 original size:18 final size:17
Alignment explanation
Indices: 14220566--14220599 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14220556 GATATGATAC
*
14220566 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
14220583 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
14220600 ATTCGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:14220916 original size:19 final size:19
Alignment explanation
Indices: 14220892--14220965 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
14220882 AATCATATCT
*
14220892 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
14220911 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
14220929 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14220948 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
14220966 TGAAGATAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
18 18 0.34
19 35 0.66
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14220938 original size:37 final size:38
Alignment explanation
Indices: 14220885--14220965 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
14220875 ATTACAAAAT
*
14220885 CATATC-T-TCTAAGATTGTATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
14220921 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
14220958 CATATCAT
1 CATATCAT
14220966 TGAAGATAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:14221123 original size:21 final size:21
Alignment explanation
Indices: 14221084--14221124 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14221074 TTGGACTTCG
* **
14221084 TTTTTTTTTTTGGGTTTATTA
1 TTTTTGTTTTTGGACTTATTA
14221105 TTTTTGTTTTTGGACTTATT
1 TTTTTGTTTTTGGACTTATT
14221125 TCTGGGCCCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.02, G:0.15, T:0.73
Consensus pattern (21 bp):
TTTTTGTTTTTGGACTTATTA
Found at i:14221761 original size:19 final size:19
Alignment explanation
Indices: 14221716--14221754 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
14221706 AATAATTTAC
14221716 AAGAAATTTTTTAAATTTT
1 AAGAAATTTTTTAAATTTT
14221735 AAGAAATTTTTTAAATTTT
1 AAGAAATTTTTTAAATTTT
14221754 A
1 A
14221755 TGCAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
AAGAAATTTTTTAAATTTT
Found at i:14221839 original size:19 final size:19
Alignment explanation
Indices: 14221817--14221915 Score: 62
Period size: 19 Copynumber: 5.0 Consensus size: 19
14221807 AAGGAATGAT
*
14221817 ATATATAGTAAAATATATA
1 ATATATAATAAAATATATA
*
14221836 ATATATAATAAAATTTATA
1 ATATATAATAAAATATATA
* *
14221855 A-ATAAAATGTATAATAATATAA
1 ATATATAA--TAAAAT-ATAT-A
14221877 ATAATATAATGAATAATATATA
1 AT-ATATAAT-AA-AATATATA
14221899 A-ATA-AA-AATAATATATA
1 ATATATAATAA-AATATATA
14221916 CACTATTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
17 11 0.17
18 5 0.08
19 20 0.31
20 8 0.12
21 3 0.05
22 5 0.08
23 5 0.08
24 8 0.12
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATATAATAAAATATATA
Found at i:14221875 original size:21 final size:20
Alignment explanation
Indices: 14221828--14221905 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 20
14221818 TATATAGTAA
*
14221828 AATATATAATATATAAT-AA-
1 AATATATAA-ATAAAATGAAT
* *
14221847 AATTTATAAATAAAATGTAT
1 AATATATAAATAAAATGAAT
14221867 AATAATATAAATAATATAATGAAT
1 AAT-ATATAAAT-A-A-AATGAAT
14221891 AATATATAAATAAAA
1 AATATATAAATAAAA
14221906 ATAATATATA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
18 6 0.12
19 9 0.19
20 5 0.10
21 8 0.17
22 2 0.04
23 9 0.19
24 9 0.19
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (20 bp):
AATATATAAATAAAATGAAT
Found at i:14221883 original size:51 final size:49
Alignment explanation
Indices: 14221766--14221909 Score: 125
Period size: 51 Copynumber: 2.9 Consensus size: 49
14221756 GCAATTAATG
* **
14221766 AATAATA-AAATAATATATAATTTATAATAAAATAAAAATGTAAGGAAT
1 AATAATATAAATAATATATAATATATAATAAAATAAAAATAAAAGGAAT
* * * *
14221814 GATATATATAGTAA-AATATATAATATATAATAAAATTTATAAATAAAATGTAT
1 AATA-ATATA--AATAATATATAATATATAATAAAA--TAAAAATAAAAGGAAT
14221867 AATAATATAAATAATATAATGAATA-AT-ATATAAATAAAAATAA
1 AATAATATAAATAATAT-AT-AATATATAATA-AAATAAAAATAA
14221910 TATATACACT
Statistics
Matches: 77, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
48 3 0.04
49 3 0.04
50 11 0.14
51 28 0.36
52 14 0.18
53 18 0.23
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (49 bp):
AATAATATAAATAATATATAATATATAATAAAATAAAAATAAAAGGAAT
Found at i:14221909 original size:24 final size:25
Alignment explanation
Indices: 14221852--14221910 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
14221842 AATAAAATTT
*
14221852 ATAAATAA-AATGTATAATAATATAA
1 ATAAA-AATAATGAATAATAATATAA
*
14221877 AT-AATATAATGAATAAT-ATATAA
1 ATAAAAATAATGAATAATAATATAA
14221900 ATAAAAATAAT
1 ATAAAAATAAT
14221911 ATATACACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 9 0.31
24 18 0.62
25 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (25 bp):
ATAAAAATAATGAATAATAATATAA
Found at i:14223595 original size:44 final size:44
Alignment explanation
Indices: 14223540--14223982 Score: 570
Period size: 44 Copynumber: 10.1 Consensus size: 44
14223530 TCAGATCTAT
* * *
14223540 TATCTTCGATCTGCTCTCTGTCAATACAGAAAAGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * * *
14223584 TATCTTTGATCTGCTCTCTGTCAATATAGAGATGTCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
14223628 TATCTTCAATCTGCTCACTGACAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
14223672 TATCTTCAATCTGCTCTCTGACAATATAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
14223716 TGTCTTCAATCCT-CTCTCTGACAATACAGAGACGCCAAATCTGC
1 TATCTTCGAT-CTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
14223760 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
14223804 TATCTTCGGTCTGCTCTCTGACAATACAGAGACGCCAAATCT-A
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
14223847 TCAT-TTTGATTTGCTCTCTGTCAATACAGAGACGCCAAATCTG-
1 T-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * *
14223890 TCATCTTCGATCTGCTCTCTGTCAATACAGAGACACGAAATCTGT
1 T-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
14223935 TATCTTCAATCTGCTCTCTGACAATATAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
14223979 TATC
1 TATC
14223983 GGTGATCTAT
Statistics
Matches: 354, Mismatches: 39, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
43 41 0.12
44 310 0.88
45 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
Found at i:14235726 original size:15 final size:16
Alignment explanation
Indices: 14235680--14235737 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 16
14235670 TTTAAAAAAA
* *
14235680 TATATTAGATGATATAA
1 TATATTAAAT-ATATAT
*
14235697 TA-ATTCAATATATAT
1 TATATTAAATATATAT
14235712 TCATA-TAAATA-ATAT
1 T-ATATTAAATATATAT
14235727 TATATTAAATA
1 TATATTAAATA
14235738 GGTGCAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 3 0.09
15 17 0.50
16 11 0.32
17 3 0.09
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (16 bp):
TATATTAAATATATAT
Found at i:14235850 original size:19 final size:19
Alignment explanation
Indices: 14235826--14235864 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
14235816 AATAATTTAC
14235826 AAGAAATTTTTTAAATTTT
1 AAGAAATTTTTTAAATTTT
14235845 AAGAAATTTTTTAAATTTT
1 AAGAAATTTTTTAAATTTT
14235864 A
1 A
14235865 CGCAACTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
AAGAAATTTTTTAAATTTT
Found at i:14235949 original size:19 final size:19
Alignment explanation
Indices: 14235927--14236025 Score: 62
Period size: 19 Copynumber: 5.0 Consensus size: 19
14235917 AAGGAATGAT
*
14235927 ATATATAGTAAAATATATA
1 ATATATAATAAAATATATA
*
14235946 ATATATAATAAAATTTATA
1 ATATATAATAAAATATATA
* *
14235965 A-ATAAAATGTATAATAATATAA
1 ATATATAA--TAAAAT-ATAT-A
14235987 ATAATATAATGAATAATATATA
1 AT-ATATAAT-AA-AATATATA
14236009 A-ATA-AA-AATAATATATA
1 ATATATAATAA-AATATATA
14236026 CATTATTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
17 11 0.17
18 5 0.08
19 20 0.31
20 8 0.12
21 3 0.05
22 5 0.08
23 5 0.08
24 8 0.12
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATATAATAAAATATATA
Found at i:14235985 original size:21 final size:20
Alignment explanation
Indices: 14235938--14236015 Score: 70
Period size: 19 Copynumber: 3.8 Consensus size: 20
14235928 TATATAGTAA
*
14235938 AATATATAATATATAAT-AA-
1 AATATATAA-ATAAAATGAAT
* *
14235957 AATTTATAAATAAAATGTAT
1 AATATATAAATAAAATGAAT
14235977 AATAATATAAATAATATAATGAAT
1 AAT-ATATAAAT-A-A-AATGAAT
14236001 AATATATAAATAAAA
1 AATATATAAATAAAA
14236016 ATAATATATA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
18 6 0.12
19 9 0.19
20 5 0.10
21 8 0.17
22 2 0.04
23 9 0.19
24 9 0.19
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (20 bp):
AATATATAAATAAAATGAAT
Found at i:14235993 original size:51 final size:49
Alignment explanation
Indices: 14235876--14236019 Score: 125
Period size: 51 Copynumber: 2.9 Consensus size: 49
14235866 GCAACTAATG
* **
14235876 AATAATA-AAATAATATATAATTTATAATAAAATAAAAATGTAAGGAAT
1 AATAATATAAATAATATATAATATATAATAAAATAAAAATAAAAGGAAT
* * * *
14235924 GATATATATAGTAA-AATATATAATATATAATAAAATTTATAAATAAAATGTAT
1 AATA-ATATA--AATAATATATAATATATAATAAAA--TAAAAATAAAAGGAAT
14235977 AATAATATAAATAATATAATGAATA-AT-ATATAAATAAAAATAA
1 AATAATATAAATAATAT-AT-AATATATAATA-AAATAAAAATAA
14236020 TATATACATT
Statistics
Matches: 77, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
48 3 0.04
49 3 0.04
50 11 0.14
51 28 0.36
52 14 0.18
53 18 0.23
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (49 bp):
AATAATATAAATAATATATAATATATAATAAAATAAAAATAAAAGGAAT
Found at i:14236019 original size:24 final size:25
Alignment explanation
Indices: 14235962--14236020 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
14235952 AATAAAATTT
*
14235962 ATAAATAA-AATGTATAATAATATAA
1 ATAAA-AATAATGAATAATAATATAA
*
14235987 AT-AATATAATGAATAAT-ATATAA
1 ATAAAAATAATGAATAATAATATAA
14236010 ATAAAAATAAT
1 ATAAAAATAAT
14236021 ATATACATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 9 0.31
24 18 0.62
25 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (25 bp):
ATAAAAATAATGAATAATAATATAA
Found at i:14240209 original size:3 final size:3
Alignment explanation
Indices: 14240201--14240260 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
14240191 GTGAAAAAAG
14240201 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
14240249 GAA GAA AAA GAA
1 GAA GAA GAA GAA
14240261 AATACTGCTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14241931 original size:15 final size:15
Alignment explanation
Indices: 14241913--14241960 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
14241903 ACAACAACAT
14241913 AGGAAGATTTGGGTG
1 AGGAAGATTTGGGTG
* *
14241928 AGGAAGA-AT--AT-
1 AGGAAGATTTGGGTG
14241939 AGGAAGATTTGGGTG
1 AGGAAGATTTGGGTG
14241954 AGGAAGA
1 AGGAAGA
14241961 ATCAAACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
11 7 0.28
12 2 0.08
14 2 0.08
15 14 0.56
ACGTcount: A:0.38, C:0.00, G:0.42, T:0.21
Consensus pattern (15 bp):
AGGAAGATTTGGGTG
Found at i:14241947 original size:26 final size:26
Alignment explanation
Indices: 14241911--14241962 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14241901 AGACAACAAC
14241911 ATAGGAAGATTTGGGTGAGGAAGAAT
1 ATAGGAAGATTTGGGTGAGGAAGAAT
14241937 ATAGGAAGATTTGGGTGAGGAAGAAT
1 ATAGGAAGATTTGGGTGAGGAAGAAT
14241963 CAAACATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (26 bp):
ATAGGAAGATTTGGGTGAGGAAGAAT
Found at i:14245508 original size:20 final size:20
Alignment explanation
Indices: 14245485--14245522 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14245475 TTAAATTCTA
14245485 AAAGATAAATAAAAATAATT
1 AAAGATAAATAAAAATAATT
*
14245505 AAAGATAAATGAAAATAA
1 AAAGATAAATAAAAATAA
14245523 ATCCTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (20 bp):
AAAGATAAATAAAAATAATT
Found at i:14251906 original size:2 final size:2
Alignment explanation
Indices: 14251901--14251929 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14251891 AATGACCCCC
14251901 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14251930 CTTGGAGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14256187 original size:2 final size:2
Alignment explanation
Indices: 14256180--14256205 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14256170 GTTTAGTTTA
14256180 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14256206 TAAAGTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14264728 original size:3 final size:3
Alignment explanation
Indices: 14264720--14264771 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
14264710 GAGGAATACT
14264720 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14264768 ATA A
1 ATA A
14264772 ATAAGGTAAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14264856 original size:3 final size:3
Alignment explanation
Indices: 14264848--14264931 Score: 52
Period size: 3 Copynumber: 28.7 Consensus size: 3
14264838 TGAAAGTGCC
* * * * * *
14264848 AAT AAT AAT AA- AAGA AAT AAT AA- AAT AAC AAG AAA AAT ATT AAA
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14264892 AAT AA- AAT AAT AATT AA- AAT AAT AATT AA- AAT AAT AAT AA
1 AAT AAT AAT AAT AA-T AAT AAT AAT AA-T AAT AAT AAT AAT AA
14264932 ACGAACAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
2 10 0.16
3 46 0.72
4 8 0.12
ACGTcount: A:0.71, C:0.01, G:0.02, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:14264910 original size:26 final size:24
Alignment explanation
Indices: 14264848--14264932 Score: 82
Period size: 24 Copynumber: 3.5 Consensus size: 24
14264838 TGAAAGTGCC
* *
14264848 AATAATAAT-AAAAGAAATAATAA
1 AATAATAATAAAAATAAAAAATAA
* *
14264871 AATAACAAGAAAAATATTAAAAATAA
1 AATAATAATAAAAATA--AAAAATAA
* * *
14264897 AATAATAATTAAAATAATAATTAA
1 AATAATAATAAAAATAAAAAATAA
14264921 AATAATAATAAA
1 AATAATAATAAA
14264933 CGAACAAAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
23 7 0.14
24 22 0.45
26 20 0.41
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.25
Consensus pattern (24 bp):
AATAATAATAAAAATAAAAAATAA
Found at i:14264911 original size:12 final size:12
Alignment explanation
Indices: 14264894--14264929 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
14264884 ATATTAAAAA
14264894 TAAAATAATAAT
1 TAAAATAATAAT
14264906 TAAAATAATAAT
1 TAAAATAATAAT
14264918 TAAAATAATAAT
1 TAAAATAATAAT
14264930 AAACGAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAAATAATAAT
Found at i:14265146 original size:3 final size:3
Alignment explanation
Indices: 14265138--14265175 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14265128 AGCAAAGATA
14265138 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14265176 ATGTGCAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14275158 original size:13 final size:13
Alignment explanation
Indices: 14275140--14275165 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14275130 TGATTCGAAA
14275140 CCTGGAATCACGG
1 CCTGGAATCACGG
14275153 CCTGGAATCACGG
1 CCTGGAATCACGG
14275166 TGCTGATGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
CCTGGAATCACGG
Found at i:14288456 original size:59 final size:59
Alignment explanation
Indices: 14288359--14288477 Score: 211
Period size: 59 Copynumber: 2.0 Consensus size: 59
14288349 TTTCTCGTCG
* *
14288359 TGACATCGAGCTTTATCTCGTTGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGGCA
1 TGACATCGAGCTTTATCTCATCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGGCA
*
14288418 TGACGTCGAGCTTTATCTCATCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGGCA
1 TGACATCGAGCTTTATCTCATCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGGCA
14288477 T
1 T
14288478 ACTCCACAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.35
Consensus pattern (59 bp):
TGACATCGAGCTTTATCTCATCGGGATGTCACTTACTGTTTTGTCTGAAATGCGAGGCA
Found at i:14293237 original size:39 final size:39
Alignment explanation
Indices: 14293183--14293260 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
14293173 TTAAATGCGA
*
14293183 GACATACTCCACATGTATATATAGAGAGAAATATCTAAC
1 GACATACTCCACATGTATATAGAGAGAGAAATATCTAAC
14293222 GACATACTCCACATGTATATAGAGAGAGAAATATCTAAC
1 GACATACTCCACATGTATATAGAGAGAGAAATATCTAAC
14293261 TTGACTTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (39 bp):
GACATACTCCACATGTATATAGAGAGAGAAATATCTAAC
Found at i:14295258 original size:29 final size:31
Alignment explanation
Indices: 14295192--14295267 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 31
14295182 AAATGAAATA
14295192 TTAA-TTTTAAATTTAATTTCAAAACATTGAT
1 TTAATTTTTAAATTT-ATTTCAAAACATTGAT
*
14295223 TTAATTTTTAAATTT-TTT-AAAATATTG-T
1 TTAATTTTTAAATTTATTTCAAAACATTGAT
14295251 TTACA-TTTTAGAATTTA
1 TTA-ATTTTTA-AATTTA
14295268 AGTATAGTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
28 9 0.22
29 14 0.35
30 3 0.08
31 4 0.10
32 10 0.25
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (31 bp):
TTAATTTTTAAATTTATTTCAAAACATTGAT
Found at i:14295595 original size:20 final size:20
Alignment explanation
Indices: 14295570--14295607 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14295560 TTTTATTGCT
*
14295570 AAATTTTATTATTGGGTTGA
1 AAATTTTAGTATTGGGTTGA
14295590 AAATTTTAGTATTGGGTT
1 AAATTTTAGTATTGGGTT
14295608 TTATTGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (20 bp):
AAATTTTAGTATTGGGTTGA
Found at i:14296851 original size:3 final size:3
Alignment explanation
Indices: 14296843--14296938 Score: 192
Period size: 3 Copynumber: 32.0 Consensus size: 3
14296833 TCAAAGAAAG
14296843 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14296891 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14296939 GGGGCAAGCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 93 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14298503 original size:531 final size:533
Alignment explanation
Indices: 14297442--14298510 Score: 1686
Period size: 531 Copynumber: 2.0 Consensus size: 533
14297432 AACATCGGCC
14297442 AAAACGGCACCGTTCAGTCCTATCTATATAAATCAATTTTTTTATTTCAAAAACTTCATTCTACT
1 AAAACGGCACCGTTCAGTCCTATCTATATAAATCAATTTTTTTATTT-AAAAACTTCATTCTACT
*
14297507 TAGGTTATTAAAAAAAACTTTAAAACCCTATATTTTTCTCTCAGCCTTTCTCTTAGTCTAGCCTT
65 TAGGTTATTAAAAAAAACTTTAAAACCCTATATTTTTCTCTCAGCCTCTCTCTTAGTCTAGCCTT
* * * *
14297572 TGAGCCGTCGTGGGCCACTGTGGTGGCCACCGGTCACCAGCAATGGCAGTCGCTGCCTCTGGTGG
130 TGAGCAGTCGTAGGCCACTGTGGTGGCCACCGGTCACCAGCAACGGCAGTCGCTACCTCTGGTGG
* *
14297637 TTGGAATCCAAAAAATCCCTTTTTTAGCCTCATTTTAACCCTTTTTTTTTTAACTTTTTAAAACC
195 CTGAAATCCAAAAAATCCCTTTTTTAGCCTCATTTTAACCC---TTTTTTTAACTTTTTAAAACC
*
14297702 TTTTTCACCCTGATTTGAAGTAAAAATGAAGAAAAATCAAAAAATGTTTAAGAAATCTTTCGGTT
257 TTTTTCACCCTGATTTGAAGTAAAAATGAAGAAAAATCAAAAAATGTTTAAGAAACCTTTCGGTT
* *
14297767 TCTCCTCCTCCAAAGATACTATATGTAATAACCCAAAATTCATGGGCATCGAAAAAGTACAATAT
322 TCTCCTCCTCCAAAGATACTATATGTAATAACCCAAAATTCACGAGCATCGAAAAAGTACAATAT
** *
14297832 CGGGCCTCTGTCTTAGTAAACCGAGTTCGTAAATAATTATTAGGAATAATTGTAAGTCTAGTAGT
387 CGGGCCTCCATCTTAGTAAACCAAGTTCGTAAATAATTATTAGGAATAATTGTAAGTCTAGTAGT
14297897 ATGTTTAATTAGGCTTTAATTAAGTGAAATTAGCTCAATTTAGAGAAAATAGTAAAAAGAACTAA
452 ATGTTTAATTAGGCTTTAATTAAGTGAAATTAGCTCAATTTAGAGAAAATAGTAAAAAGAACTAA
14297962 ATTAAATAAGGGGTAAA
517 ATTAAATAAGGGGTAAA
* * *
14297979 AAAACGGCACCGTTTAGTCTTGTCTATATAAATCAATTTTTTT-TTGT-AAAACTTCATTCTACT
1 AAAACGGCACCGTTCAGTCCTATCTATATAAATCAATTTTTTTATT-TAAAAACTTCATTCTACT
* * *
14298042 TAGGTTTTTAAAAAAAAACTTTAAAACCCTATATTTTTCTCTTAGCCTCTCTCTTAGTCTGGCCT
65 TAGGTTATT-AAAAAAAACTTTAAAACCCTATATTTTTCTCTCAGCCTCTCTCTTAGTCTAGCCT
* * *
14298107 TTGAGCAGTC-TAGGCCACTGTGGTGGCCACTGGTCACCAGCGACGGCAGTCGCTACCTCTGTTG
129 TTGAGCAGTCGTAGGCCACTGTGGTGGCCACCGGTCACCAGCAACGGCAGTCGCTACCTCTGGTG
*
14298171 GCT-AAAGTCCAAAAAATACCC-TTTTTAGCCTCGTTTTAACCC-TTTTTTAACTTTTTAAAACC
194 GCTGAAA-TCCAAAAAAT-CCCTTTTTTAGCCTCATTTTAACCCTTTTTTTAACTTTTTAAAACC
* *
14298233 TTTTTCACCCTGATTTGAAGTAAAAATGATGAAAAATCAGAAAATGTTTAAGAAACCTTTCGGTT
257 TTTTTCACCCTGATTTGAAGTAAAAATGAAGAAAAATCAAAAAATGTTTAAGAAACCTTTCGGTT
* * * * *
14298298 TCTCCTCCTCCAACGATACTATCTGTAATGACCCAAAATTTACGAGTATCGAAAAAGTACAATAT
322 TCTCCTCCTCCAAAGATACTATATGTAATAACCCAAAATTCACGAGCATCGAAAAAGTACAATAT
*
14298363 CGGGCCTCCATCTTAGTAAACCAAGTTCGTAAATAATTATTAGGAATAATTGTGAGTCTAGTAGT
387 CGGGCCTCCATCTTAGTAAACCAAGTTCGTAAATAATTATTAGGAATAATTGTAAGTCTAGTAGT
* *
14298428 GTGTTTAATTTA-GCTTTAATTAAGTGAAATTAGTTCAATTTAGAGAAAATAGTAAAAATG-ACT
452 ATGTTTAA-TTAGGCTTTAATTAAGTGAAATTAGCTCAATTTAGAGAAAATAGTAAAAA-GAACT
*
14298491 AAATTGAATAAGGGGTAAA
515 AAATTAAATAAGGGGTAAA
14298510 A
1 A
14298511 GTTGAATTAT
Statistics
Matches: 492, Mismatches: 34, Indels: 18
0.90 0.06 0.03
Matches are distributed among these distances:
531 275 0.56
532 4 0.01
534 2 0.00
535 104 0.21
536 66 0.13
537 41 0.08
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (533 bp):
AAAACGGCACCGTTCAGTCCTATCTATATAAATCAATTTTTTTATTTAAAAACTTCATTCTACTT
AGGTTATTAAAAAAAACTTTAAAACCCTATATTTTTCTCTCAGCCTCTCTCTTAGTCTAGCCTTT
GAGCAGTCGTAGGCCACTGTGGTGGCCACCGGTCACCAGCAACGGCAGTCGCTACCTCTGGTGGC
TGAAATCCAAAAAATCCCTTTTTTAGCCTCATTTTAACCCTTTTTTTAACTTTTTAAAACCTTTT
TCACCCTGATTTGAAGTAAAAATGAAGAAAAATCAAAAAATGTTTAAGAAACCTTTCGGTTTCTC
CTCCTCCAAAGATACTATATGTAATAACCCAAAATTCACGAGCATCGAAAAAGTACAATATCGGG
CCTCCATCTTAGTAAACCAAGTTCGTAAATAATTATTAGGAATAATTGTAAGTCTAGTAGTATGT
TTAATTAGGCTTTAATTAAGTGAAATTAGCTCAATTTAGAGAAAATAGTAAAAAGAACTAAATTA
AATAAGGGGTAAA
Found at i:14298813 original size:29 final size:30
Alignment explanation
Indices: 14298779--14298837 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14298769 ACTTATTTAC
* *
14298779 TTTTTATT-AAAGTAAATAGATATTTATTA
1 TTTTTATTAAAAGTAAAAAGATAGTTATTA
*
14298808 TTTTTATTAAAATTAAAAAGATAGTTATTA
1 TTTTTATTAAAAGTAAAAAGATAGTTATTA
14298838 ATTAAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (30 bp):
TTTTTATTAAAAGTAAAAAGATAGTTATTA
Found at i:14299533 original size:17 final size:18
Alignment explanation
Indices: 14299511--14299546 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14299501 GTAAATGAGT
14299511 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
14299528 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
14299546 A
1 A
14299547 TAGAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:14311826 original size:44 final size:44
Alignment explanation
Indices: 14311768--14311857 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 44
14311758 GGAACTGTAT
14311768 TTTCAATCTACTCCACTG-GAGCTTCAGGGAGATAAGATTCGTAG
1 TTTCAATCTACTCCACTGCGA-CTTCAGGGAGATAAGATTCGTAG
* * * *
14311812 TTTCGATCTGCTCCACTGCTACTTCAGGGAGATAAGATTTGTAG
1 TTTCAATCTACTCCACTGCGACTTCAGGGAGATAAGATTCGTAG
14311856 TT
1 TT
14311858 GTAGCTTGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (44 bp):
TTTCAATCTACTCCACTGCGACTTCAGGGAGATAAGATTCGTAG
Found at i:14311991 original size:44 final size:43
Alignment explanation
Indices: 14311924--14312362 Score: 335
Period size: 44 Copynumber: 9.7 Consensus size: 43
14311914 TTAATTCGAC
* * *
14311924 CCACTGCAACTTCAAAGG-TATAAGATTTGTCGCTTCAATCTGCT
1 CCACTGCAACTTC--AGGAGATAAGATTTGTAGCTTTAATCTGCT
* * *
14311968 CCACTGCAACTTCAGTTAGATAAGATTTATAGCTTCAATCTGCT
1 CCACTGCAACTTCAG-GAGATAAGATTTGTAGCTTTAATCTGCT
* * *
14312012 TCACAGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCTGCT
1 CCACTGCAACTTCA-GGAGATAAGATTTGTAGCTTTAATCTGCT
* * * * * *
14312056 CCACTGTAACTTCAAGTAGGTAATATTTGTAACTTGTAGCTTTAATTTGTT
1 CCACTGCAACTTC-AGGA-G--ATA--AG--ATTTGTAGCTTTAATCTGCT
* * * *
14312107 CCACTACAACTTCAGGGAAATAAGACTTGCTATGGTAGATTTAATCCGAC-
1 CCACTGCAACTTCA-GGAGATAAGA--T--T-T-GTAGCTTTAATCTG-CT
* * * * *
14312157 CTACTGCTACTTCA-GAGGTATAGGATTTGTCGCTTCAATCTGCT
1 CCACTGCAACTTCAGGA-G-ATAAGATTTGTAGCTTTAATCTGCT
* *
14312201 CCACTGCAGCTTCAGCGAGATAAGATTTCTAGCTTTAATCTGCT
1 CCACTGCAACTTCAG-GAGATAAGATTTGTAGCTTTAATCTGCT
* *
14312245 CCACTGCAACTTTAAGGAGATAAGATTTGTAGCTTGAATCTGCT
1 CCACTGCAAC-TTCAGGAGATAAGATTTGTAGCTTTAATCTGCT
* *
14312289 CCACTACAACTTCAAGGAGATAAGATTTGTAGCTTTAATATGCT
1 CCACTGCAACTTC-AGGAGATAAGATTTGTAGCTTTAATCTGCT
* *
14312333 CCACTGCAACTTTAAGGAGATAAAATTTGT
1 CCACTGCAAC-TTCAGGAGATAAGATTTGT
14312363 TATATCAAAT
Statistics
Matches: 312, Mismatches: 56, Indels: 54
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 223 0.71
45 11 0.04
46 4 0.01
47 3 0.01
48 7 0.02
49 2 0.01
50 28 0.09
51 29 0.09
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (43 bp):
CCACTGCAACTTCAGGAGATAAGATTTGTAGCTTTAATCTGCT
Found at i:14312186 original size:233 final size:233
Alignment explanation
Indices: 14311769--14312319 Score: 730
Period size: 233 Copynumber: 2.4 Consensus size: 233
14311759 GAACTGTATT
* * * * * * *
14311769 TTCAATCTACTCCACTGGAGCTTCAGGGAGATAAGATTCGT-AGTTTCGATCTGCTCCACTGCT-
1 TTCAATCTGCTCCACAGCAACTTCAGGGAGATAAGATTTGTAACTTT-AATCTGCTCCACTG-TA
* * ** * *
14311832 ACTTCAGGGAGATAAGATTTGT-AGTTGTAGCTTGAATTTGTTCCACTGTAATTTTAGGAAAATA
64 ACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTGAATTTGTTCCACTACAACTTCAGGAAAATA
* *
14311896 AGACTTGCTATGTTAGATTTAATTCGACCCACTGCAACTTCAAAGGTATAAGATTTGTCGCTTCA
129 AGACTTGCTATGGTAGATTTAATCCGACCCACTGCAACTTCAAAGGTATAAGATTTGTCGCTTCA
**
14311961 ATCTGCTCCACTGCAACTTCAGTTAGATAAGATTTATAGC
194 ATCTGCTCCACTGCAACTTCAGCGAGATAAGATTTATAGC
*
14312001 TTCAATCTGCTTCACAGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCTGCTCCACTGTAAC
1 TTCAATCTGCTCCACAGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCTGCTCCACTGTAAC
* * * * *
14312066 TTCAAGTAGGTAATATTTGTAACTTGTAGCTTTAATTTGTTCCACTACAACTTCAGGGAAATAAG
66 TTCAAGGAGATAAGATTTGTAACTTGTAGCTTGAATTTGTTCCACTACAACTTCAGGAAAATAAG
* * * *
14312131 ACTTGCTATGGTAGATTTAATCCGACCTACTGCTACTTCAGAGGTATAGGATTTGTCGCTTCAAT
131 ACTTGCTATGGTAGATTTAATCCGACCCACTGCAACTTCAAAGGTATAAGATTTGTCGCTTCAAT
* *
14312196 CTGCTCCACTGCAGCTTCAGCGAGATAAGATTTCTAGC
196 CTGCTCCACTGCAACTTCAGCGAGATAAGATTTATAGC
* * * * * * **
14312234 TTTAATCTGCTCCACTGCAACTTTAAGGAGATAAGATTTGTAGCTTGAATCTGCTCCACTACAAC
1 TTCAATCTGCTCCACAGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCTGCTCCACTGTAAC
14312299 TTCAAGGAGATAAGATTTGTA
66 TTCAAGGAGATAAGATTTGTA
14312320 GCTTTAATAT
Statistics
Matches: 275, Mismatches: 41, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
231 1 0.00
232 66 0.24
233 208 0.76
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (233 bp):
TTCAATCTGCTCCACAGCAACTTCAGGGAGATAAGATTTGTAACTTTAATCTGCTCCACTGTAAC
TTCAAGGAGATAAGATTTGTAACTTGTAGCTTGAATTTGTTCCACTACAACTTCAGGAAAATAAG
ACTTGCTATGGTAGATTTAATCCGACCCACTGCAACTTCAAAGGTATAAGATTTGTCGCTTCAAT
CTGCTCCACTGCAACTTCAGCGAGATAAGATTTATAGC
Found at i:14313020 original size:12 final size:13
Alignment explanation
Indices: 14313003--14313040 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
14312993 ATCCTGGAAT
14313003 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
14313015 ATTAAGAACACATA
1 ATTAAGAACA-AGA
14313029 ATTAAGAACAAG
1 ATTAAGAACAAG
14313041 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:14317019 original size:55 final size:55
Alignment explanation
Indices: 14316939--14317080 Score: 169
Period size: 55 Copynumber: 2.6 Consensus size: 55
14316929 TATAAAGGGC
* ** * *
14316939 CACGCCCATGTTGTTTTGGCAGGTTCGCCCACGGTTTCTTGGCACGGGCATGTCG
1 CACGCCCGTGTTAATTTGGCAGGTTCGCCCACGGTTTCTAGGCACGCGCATGTCG
** * *
14316994 CACGCTTGTGTTAATTTGACAGGTTCAG-CCACGGTTTCTAGGCACGCGCGTGTCG
1 CACGCCCGTGTTAATTTGGCAGGTTC-GCCCACGGTTTCTAGGCACGCGCATGTCG
**
14317049 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCAC
1 CACGCCCGTGTTAATTTGGCAGGTTCGCCCAC
14317081 AGCCATGTTG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 1 0.01
55 69 0.97
56 1 0.01
ACGTcount: A:0.13, C:0.29, G:0.30, T:0.29
Consensus pattern (55 bp):
CACGCCCGTGTTAATTTGGCAGGTTCGCCCACGGTTTCTAGGCACGCGCATGTCG
Found at i:14326121 original size:6 final size:6
Alignment explanation
Indices: 14326110--14326172 Score: 65
Period size: 6 Copynumber: 10.3 Consensus size: 6
14326100 AATCCTCCTA
* * *
14326110 TTTTAT TTTTAT TTTTAT TTATT-T ATTTTAT TCTTAT TTTTCT TTTGAT
1 TTTTAT TTTTAT TTTTAT TT-TTAT -TTTTAT TTTTAT TTTTAT TTTTAT
*
14326159 TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TT
14326173 CAATTTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
6 42 0.89
7 5 0.11
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:14327762 original size:46 final size:46
Alignment explanation
Indices: 14327709--14327884 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
14327699 TATTTGGGCA
14327709 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
14327755 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
14327802 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
14327848 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14327885 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:14327864 original size:93 final size:93
Alignment explanation
Indices: 14327705--14327876 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14327695 GGGATATTTG
* *
14327705 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
14327770 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
14327798 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
14327863 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
14327877 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:14331862 original size:13 final size:13
Alignment explanation
Indices: 14331841--14331873 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14331831 TTTACTTAAA
*
14331841 TTAGTTAATTAGT
1 TTAGATAATTAGT
14331854 TTAGATAATTAGT
1 TTAGATAATTAGT
14331867 TTA-ATAA
1 TTAGATAA
14331874 ACAAACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:14337975 original size:23 final size:23
Alignment explanation
Indices: 14337945--14338003 Score: 100
Period size: 23 Copynumber: 2.6 Consensus size: 23
14337935 TGTCCCGAGT
14337945 ACACGGGCGTGTGCCCTGCCTCC
1 ACACGGGCGTGTGCCCTGCCTCC
*
14337968 ACACGGGCGTGTACCCTGCCTCC
1 ACACGGGCGTGTGCCCTGCCTCC
*
14337991 AAACGGGCGTGTG
1 ACACGGGCGTGTG
14338004 AGGTTTAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.14, C:0.37, G:0.32, T:0.17
Consensus pattern (23 bp):
ACACGGGCGTGTGCCCTGCCTCC
Found at i:14338376 original size:25 final size:25
Alignment explanation
Indices: 14338348--14338398 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
14338338 GATCATATCG
14338348 AGATTGGATCTATTCTACTTCATCT
1 AGATTGGATCTATTCTACTTCATCT
*
14338373 AGATTGGATCTATTCTGCTTCATCT
1 AGATTGGATCTATTCTACTTCATCT
14338398 A
1 A
14338399 ACTTCAACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.43
Consensus pattern (25 bp):
AGATTGGATCTATTCTACTTCATCT
Found at i:14345828 original size:43 final size:43
Alignment explanation
Indices: 14345749--14345906 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
14345739 TAATGTCATA
* * * * * *
14345749 TCCCAGATATGGTTTTACATGTTATCACATA-TCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCACA-ACACGATGCCAATG
* *
14345792 TCCCAGACAGGGTCTTATACGTAATCA-ATTA-ACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACA--ACACGATGCCAATG
* *
14345835 TCCCAGACATGGTCTTACGCGTAATCACAACACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAACACGATGCCAATG
*
14345878 TCCCAGACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACACGTAATCACA
14345907 TCTCAATAAC
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 2 0.02
43 95 0.97
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACAACACGATGCCAATG
Found at i:14346453 original size:29 final size:29
Alignment explanation
Indices: 14346389--14346454 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
14346379 TTTTCATTTA
* *
14346389 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATATACACT
* * *
14346418 TTTCTCAATTTAATCCCT-AATATGCATT
1 TTTCTCAATTTAACCCCTCAATATACACT
14346446 TTTACTCAA
1 TTT-CTCAA
14346455 AATCACTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATATACACT
Found at i:14368574 original size:43 final size:43
Alignment explanation
Indices: 14368526--14368683 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 43
14368516 GTTACAGAGA
14368526 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * *
14368569 TGTGATTACGTGTAAGACGATGTCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
* * * * **
14368613 T-TGATTTCATGTAAGACCCTGTCTAGGACAGTGGCA-TCAAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
14368654 ATGTGATAACATGTAAGACCATATCTGGGA
1 -TGTGATTACATGTAAGACCATGTCTGGGA
14368684 TATGACATTG
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 88 0.93
44 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:14371349 original size:3 final size:3
Alignment explanation
Indices: 14371337--14371391 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
14371327 CAACAACAAC
*
14371337 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14371385 AAT AAT A
1 AAT AAT A
14371392 GGGGCAACAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14372120 original size:21 final size:20
Alignment explanation
Indices: 14372094--14372143 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
14372084 TCCAAAAAAT
*
14372094 ACCCTTTTTAGCCTCGTTTTA
1 ACCCTTTTTAACCT-GTTTTA
*
14372115 ACCCTTTTTAACCTTTTTTA
1 ACCCTTTTTAACCTGTTTTA
*
14372135 AACCTTTTT
1 ACCCTTTTT
14372144 CACCCTGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.18, C:0.26, G:0.04, T:0.52
Consensus pattern (20 bp):
ACCCTTTTTAACCTGTTTTA
Found at i:14372125 original size:10 final size:10
Alignment explanation
Indices: 14372094--14372149 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
14372084 TCCAAAAAAT
14372094 ACCCTTTTTA
1 ACCCTTTTTA
* *
14372104 GCCTCGTTTTA
1 ACC-CTTTTTA
14372115 ACCCTTTTTA
1 ACCCTTTTTA
*
14372125 ACCTTTTTTA
1 ACCCTTTTTA
* *
14372135 AACCTTTTTC
1 ACCCTTTTTA
14372145 ACCCT
1 ACCCT
14372150 GATTTGAAGT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
10 28 0.78
11 8 0.22
ACGTcount: A:0.18, C:0.30, G:0.04, T:0.48
Consensus pattern (10 bp):
ACCCTTTTTA
Found at i:14372333 original size:38 final size:38
Alignment explanation
Indices: 14372282--14372358 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
14372272 CGGGGCAGGT
14372282 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
1 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
14372320 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
1 AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
14372358 A
1 A
14372359 GTAGATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (38 bp):
AAGAAGAGATTCTTTTAATTTTATTTTTGCAAAAACAA
Found at i:14378459 original size:40 final size:40
Alignment explanation
Indices: 14378400--14378659 Score: 235
Period size: 40 Copynumber: 6.5 Consensus size: 40
14378390 CATTGGAATG
* * * *
14378400 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
* *
14378440 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGACT
* * * * * *
14378480 ATATCCGGACTATGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
* * *
14378520 ATATCCGGGCCAAAACCCGAAGG-AATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCAA-TTGTGCTAGTGACT
* * * *
14378560 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
* * **
14378600 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
14378639 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
14378660 ATACTTGGGT
Statistics
Matches: 180, Mismatches: 33, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
37 1 0.01
38 13 0.07
39 20 0.11
40 142 0.79
41 4 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
Done.