Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 51 of 328
Found at i:14630365 original size:24 final size:25
Alignment explanation
Indices: 14630315--14630365 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
14630305 ATTTATTTTT
*
14630315 TTATTTTAAGATGTTTTATTATGTG
1 TTATTTTAAGATATTTTATTATGTG
14630340 TTATTTTAA-ATATTTTA-TATGATG
1 TTATTTTAAGATATTTTATTATG-TG
14630364 TT
1 TT
14630366 TACGTTGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 11 0.46
25 9 0.38
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (25 bp):
TTATTTTAAGATATTTTATTATGTG
Found at i:14630926 original size:10 final size:10
Alignment explanation
Indices: 14630902--14630936 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
14630892 AAATATTTTA
*
14630902 TATTTTAT-T
1 TATTTTATAC
14630911 TATTTTATAC
1 TATTTTATAC
14630921 TATTTTATAC
1 TATTTTATAC
14630931 TATTTT
1 TATTTT
14630937 TTTTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (10 bp):
TATTTTATAC
Found at i:14644010 original size:44 final size:44
Alignment explanation
Indices: 14643922--14644073 Score: 232
Period size: 44 Copynumber: 3.4 Consensus size: 44
14643912 AGAACAGAAA
* *
14643922 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATT--ATATATGGCATTGGAGACAGGAT
14643968 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
*
14644012 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAA
1 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
* **
14644056 TAATTCATGTAAGTCCAT
1 TGAGCCATGTAAGTCCAT
14644074 GTCAAAGACA
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
44 79 0.79
46 21 0.21
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.30
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACAGGAT
Found at i:14644092 original size:90 final size:89
Alignment explanation
Indices: 14643922--14644092 Score: 218
Period size: 88 Copynumber: 1.9 Consensus size: 89
14643912 AGAACAGAAA
* * *
14643922 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTGAGCCATGTAAGTCCATA
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATAAGCCATGTAAGTCCATA
* * *
14643987 TTATATATGGCATTGGAGACAGGAT
65 TAAGACATGGCATTGGAGACAGGAT
* ** *
14644012 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAATTCATGTAAGTCCATGT
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAGCCATGTAAGTCCATAT
14644076 CAAAGACATGGCATTGG
66 --AAGACATGGCATTGG
14644093 CAGGATATTG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
88 36 0.52
90 33 0.48
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.29
Consensus pattern (89 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAGCCATGTAAGTCCATAT
AAGACATGGCATTGGAGACAGGAT
Found at i:14646484 original size:44 final size:44
Alignment explanation
Indices: 14646416--14646726 Score: 279
Period size: 44 Copynumber: 7.0 Consensus size: 44
14646406 CCAAGGTGAA
* * **
14646416 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
14646460 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * * *
14646504 TCTTATCTCCCTGAAATTACAATGGAGTAGACT-ATAGATTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AG-TTACAAG
* ** * *
14646549 TCTTATCTCCTTGAAGTTGCAGTGGAATAGATAGAAGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * *
14646593 ACTAATATCCCTGAAGTTGCAGTGGAGTAGATAGAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
* * * * *
14646637 T-TGTATTTTCATGAAGTTGCAGTGGAGCA-AGTTGAAATTAGCGTA-
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGTTA-C-AAG
* * * *
14646682 TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
14646726 T
1 T
14646727 TACAAGTACT
Statistics
Matches: 218, Mismatches: 39, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
43 4 0.02
44 145 0.67
45 65 0.30
46 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
Found at i:14646566 original size:89 final size:88
Alignment explanation
Indices: 14646455--14646665 Score: 237
Period size: 89 Copynumber: 2.4 Consensus size: 88
14646445 GATTGAAGCC
* * ** * *
14646455 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAA
1 ACAAGTCTTATCTCCATGAAGTTGCAGTGGAGCAGATAGAAGTTACAAAACTAATATCCCTGAAA
*
14646520 TTACAATGGAGTAGACTA-TAGATT
66 TTACAATGGAGTAGA-TAGAAG-TT
* * ** *
14646544 ACAAATCTTATCTCCTTGAAGTTGCAGTGGAATAGATAGAAGTTACAAAACTAATATCCCTGAAG
1 ACAAGTCTTATCTCCATGAAGTTGCAGTGGAGCAGATAGAAGTTACAAAACTAATATCCCTGAAA
* *
14646609 TTGCAGTGGAGTAGATAGAAGTT
66 TTACAATGGAGTAGATAGAAGTT
* *
14646632 ACAAGT-TGTATTTTCATGAAGTTGCAGTGGAGCA
1 ACAAGTCT-TATCTCCATGAAGTTGCAGTGGAGCA
14646666 AGTTGAAATT
Statistics
Matches: 101, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
87 1 0.01
88 30 0.30
89 70 0.69
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (88 bp):
ACAAGTCTTATCTCCATGAAGTTGCAGTGGAGCAGATAGAAGTTACAAAACTAATATCCCTGAAA
TTACAATGGAGTAGATAGAAGTT
Found at i:14646724 original size:133 final size:133
Alignment explanation
Indices: 14646414--14646724 Score: 324
Period size: 133 Copynumber: 2.3 Consensus size: 133
14646404 CACCAAGGTG
* * * * * ** * *
14646414 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAAACTAATATCCCTGAAGTTG
* * * *
14646479 CAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAATTACAATGGAGTAGACTATAGATT
66 CAGTGGAGCAGATAGAAGTTACAAGTCTTATCTCCATGAAATTACAATGGAGCAGACTATAAATT
14646544 ACA
131 ACA
* * *
14646547 AATCTTATCTCCTTGAAGTTGCAGTGGAATAGA-TAGAAGTTACAAAACTAATATCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTA-AAGCTACAAAACTAATATCCCTGAAGTT
* * * * * * *
14646611 GCAGTGGAGTAGATAGAAGTTACAAGT-TGTATTTTCATGAAGTTGCAGTGGAGCA-AGT-TGAA
65 GCAGTGGAGCAGATAGAAGTTACAAGTCT-TATCTCCATGAAATTACAATGGAGCAGACTAT-AA
*
14646673 ATTAGCG
128 ATTA-CA
* *
14646680 TATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAA
14646725 GTTACAAGTA
Statistics
Matches: 144, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
131 1 0.01
132 9 0.06
133 132 0.92
134 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (133 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAAACTAATATCCCTGAAGTTG
CAGTGGAGCAGATAGAAGTTACAAGTCTTATCTCCATGAAATTACAATGGAGCAGACTATAAATT
ACA
Found at i:14648116 original size:3 final size:3
Alignment explanation
Indices: 14648108--14648185 Score: 95
Period size: 3 Copynumber: 26.0 Consensus size: 3
14648098 ATATATATAA
* * * **
14648108 TAT TAT TAT AAT TAT TAAC CAT TAT TAT GGT T-T TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14648153 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14648186 GTGTACAATT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
2 2 0.03
3 61 0.95
4 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:14648121 original size:9 final size:9
Alignment explanation
Indices: 14648086--14648185 Score: 60
Period size: 9 Copynumber: 10.7 Consensus size: 9
14648076 ATTTTATTTA
14648086 AATTATATAT
1 AATTAT-TAT
*
14648096 AAATATATAT
1 AATTAT-TAT
14648106 AATATTATTAT
1 -A-ATTATTAT
14648117 AATTATTA-
1 AATTATTAT
14648125 ACCATTATTAT
1 A--ATTATTAT
**
14648136 GGTT-TTAT
1 AATTATTAT
*
14648144 TATTATTAT
1 AATTATTAT
*
14648153 TATTATTAT
1 AATTATTAT
*
14648162 TATTATTAT
1 AATTATTAT
*
14648171 TATTATTAT
1 AATTATTAT
*
14648180 TATTAT
1 AATTAT
14648186 GTGTACAATT
Statistics
Matches: 78, Mismatches: 6, Indels: 13
0.80 0.06 0.13
Matches are distributed among these distances:
8 7 0.09
9 46 0.59
10 17 0.22
11 4 0.05
12 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (9 bp):
AATTATTAT
Found at i:14649586 original size:45 final size:45
Alignment explanation
Indices: 14649506--14649630 Score: 160
Period size: 45 Copynumber: 2.8 Consensus size: 45
14649496 CAGGCACTTA
* * *
14649506 TGTGCCGACTACTATTACTGTTACTGTTACTGATTCAACACTTTG
1 TGTGTCGAATACTGTTACTGTTACTGTTACTGATTCAACACTTTG
* * **
14649551 TGTGTCGAATACTGTTACCGTTACTGTTACAGATTCAGTACTTTG
1 TGTGTCGAATACTGTTACTGTTACTGTTACTGATTCAACACTTTG
* * *
14649596 TGTGTTGAATACTGTTATTGTTACTATTACTGATT
1 TGTGTCGAATACTGTTACTGTTACTGTTACTGATT
14649631 ACTGTTTAGG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (45 bp):
TGTGTCGAATACTGTTACTGTTACTGTTACTGATTCAACACTTTG
Found at i:14655824 original size:46 final size:43
Alignment explanation
Indices: 14655705--14655826 Score: 129
Period size: 46 Copynumber: 2.7 Consensus size: 43
14655695 GATGAGTGCT
* * * *
14655705 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAAACGTAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CTATGAGA--T-AGTC
*
14655751 AGTGTAAGACATATCTAGGACATGCATCGGCTATGAGATATGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCTATGAGATA-GTC
14655795 AGTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGG
14655827 TACCTTACCC
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.02
44 12 0.18
45 15 0.23
46 38 0.58
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (43 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCTATGAGATAGTC
Found at i:14657538 original size:5 final size:5
Alignment explanation
Indices: 14657528--14657553 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14657518 TAAATAAATA
14657528 ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT A
14657554 AAACATAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:14657561 original size:15 final size:15
Alignment explanation
Indices: 14657528--14657561 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14657518 TAAATAAATA
* *
14657528 ATAATATAATATAAT
1 ATAATATAATAAAAC
14657543 ATAATATAATAAAAC
1 ATAATATAATAAAAC
14657558 ATAA
1 ATAA
14657562 GAAATATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (15 bp):
ATAATATAATAAAAC
Found at i:14673297 original size:2 final size:2
Alignment explanation
Indices: 14673290--14673317 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14673280 GAAAAACGTA
14673290 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14673318 TTTTATCGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14674373 original size:16 final size:15
Alignment explanation
Indices: 14674347--14674381 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
14674337 TGATGTGAAT
14674347 AATATAAAATATTAA
1 AATATAAAATATTAA
*
14674362 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
14674378 AATA
1 AATA
14674382 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:14674552 original size:20 final size:20
Alignment explanation
Indices: 14674495--14674554 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
14674485 AATACTACAT
14674495 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
14674514 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
14674537 AAATATGTACATAATATA
1 AAATATGTACATAATATA
14674555 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:14674618 original size:2 final size:2
Alignment explanation
Indices: 14674611--14674642 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14674601 AACATGTAAA
14674611 AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14674643 CGTAATATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:14674695 original size:24 final size:23
Alignment explanation
Indices: 14674668--14674719 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
14674658 AGAATATACC
*
14674668 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
14674692 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
14674715 TAATA
1 TAATA
14674720 ACAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:14675286 original size:18 final size:18
Alignment explanation
Indices: 14675231--14675286 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
14675221 GTGGAGGAGG
*
14675231 TAGTAGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
14675249 TAGT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
14675261 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
14675279 TAGTGGAG
1 TAGTGGAG
14675287 TTGGTGGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.10
13 4 0.13
14 4 0.13
16 4 0.13
17 4 0.13
18 11 0.37
ACGTcount: A:0.21, C:0.07, G:0.46, T:0.25
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:14675287 original size:30 final size:30
Alignment explanation
Indices: 14675198--14675296 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
14675188 TAGGTACAAG
* *
14675198 TGGTGGTGGAGTAAGTGTGGCTAGTGGAGG
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
14675228 AGGTAGTAGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
14675258 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
14675288 TGGTGGTGG
1 TGGTGGTGG
14675297 CAAAGGCTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.18, C:0.05, G:0.51, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:14676126 original size:87 final size:85
Alignment explanation
Indices: 14675949--14676269 Score: 295
Period size: 88 Copynumber: 3.6 Consensus size: 85
14675939 GTGATCCTGA
* * * * * **
14675949 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACATTAAAAACAGAAATTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAAC-AGAAATTGAAAACAGATTTTGAA
* * * *
14676014 AATAGCTTAGCACGTGAGCCAAG
64 AATACCTCAG-ACGTGACCCGAG
14676037 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACA-AAATTTGTAAAACAGATTTTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAGAAA-TTG-AAAACAGATTTTGAA
* *
14676101 AATACCTCGGTATGTGACCCGAG
64 AATACCTCAG-ACGTGACCCGAG
* * * * * * *
14676124 GCTCAACTCATTTCTCGTAATATAAGTTGATTCTTGAAAAGCATAAATTGAAAAAACATTAATTG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATT-TTTAAAA-CAGAAATTGAAAACAGATT--TTG
*
14676189 AAAATACCTCAG-CGTGCCCCGAG
62 AAAATACCTCAGACGTGACCCGAG
* *
14676212 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAACA
1 GCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT--AAAACAGAAATTGAAAACA
14676270 CCTCAGCGTG
Statistics
Matches: 193, Mismatches: 29, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
85 2 0.01
86 3 0.02
87 67 0.35
88 77 0.40
89 7 0.04
90 33 0.17
91 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (85 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAGAAATTGAAAACAGATTTTGAAAA
TACCTCAGACGTGACCCGAG
Found at i:14676310 original size:77 final size:76
Alignment explanation
Indices: 14676175--14676800 Score: 613
Period size: 77 Copynumber: 8.2 Consensus size: 76
14676165 CATAAATTGA
** * *
14676175 AAAAACATTAATTGAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
14676238 TTGATTTTTTTG
66 TTGA-TTTTTTG
*
14676250 AAAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
14676315 TTGATTTTTTG
66 TTGATTTTTTG
** * * *
14676326 ATGAACAGAAATT-AAAACTACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAACATGA
1 AAAAACAGAAATTGAAAAC-ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
14676388 GTTGATTTTTTTG
65 GTTGA-TTTTTTG
** * *
14676401 AAAAACAGACGTTGAAAACACCTCAGCGTGTGAGCCTAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
14676466 TTGATTTTTTTG
66 TTGA-TTTTTTG
* * * * * * *
14676478 ACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAATGCTCAACTCACCTCTAGCAATATGA
1 AAAAACAGAAATTG-AAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
14676543 GTTGATTTTTTG
65 GTTGATTTTTTG
* *
14676555 AAAAATAGAAATTGAAAACACCTCAGCATGT-----GAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
14676615 TTGA-TTTTGG
66 TTGATTTTTTG
* * * ** *
14676625 AAAACATAAATTGAGCAGAAATTGAAAATACCTCAACG-G-GTCTTGAGGTTCAACTCACCTCTC
1 -----A-AAA---A-CAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTC
*
14676688 GTAATATGAGTTGATTTTTTG
56 GCAATATGAGTTGATTTTTTG
** * * * ** *
14676709 ---ATGATAAATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
14676769 TTGATTTTTTG
66 TTGATTTTTTG
14676780 AATTAAAACAGAAATTGAAAA
1 -A--AAAACAGAAATTGAAAA
14676801 TAGAAATGGA
Statistics
Matches: 469, Mismatches: 50, Indels: 62
0.81 0.09 0.11
Matches are distributed among these distances:
70 6 0.01
71 91 0.19
74 34 0.07
75 59 0.13
76 51 0.11
77 121 0.26
78 50 0.11
79 2 0.00
80 19 0.04
83 31 0.07
84 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (76 bp):
AAAAACAGAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTG
Found at i:14676397 original size:151 final size:150
Alignment explanation
Indices: 14676184--14676802 Score: 677
Period size: 151 Copynumber: 4.1 Consensus size: 150
14676174 AAAAAACATT
* * *
14676184 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* *
14676249 GAAAAACATAAATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
65 GAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
14676314 GTTGATTTTTTGATGAACAGA
130 GTTGATTTTTTGATGAACAGA
*
14676335 AATT-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTT
1 AATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
** * * *
14676399 TGAAAAACAGACGTTGAAAACACCTCAGCGTGTGAGCCTAGGCTCAACTCACCTCTCGCAATATG
64 TGAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
**
14676464 AGTTGATTTTTTTGACAAACAGA
129 AGTTGA-TTTTTTGATGAACAGA
* * * *
14676487 AATTGAAAAATACCTCAGCGTGTAAGCC-AATGCTCAACTCACCTCTAGCAATATGAGTTGATTT
1 AATTG-AAAATACCTCAACGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
14676551 TTTGAAAAATAGAAATTGAAAACACCTCAGCATGT-----GAGGCTCAACTCACCTCTCGCAATA
62 TTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
** *
14676611 TGAGTTGATTTTGGAAAACATAAATTGAGCAGA
127 TGAGTTGATTTT--------TTGA-TGAACAGA
* * * *
14676644 AATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGTAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
** * * ** *
14676709 ---ATGATAAATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAG
66 AAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
14676769 TTGATTTTTTGAATTAAAACAGA
131 TTGATTTTTTG-A-T-GAACAGA
14676792 AATTGAAAATA
1 AATTGAAAATA
14676803 GAAATGGAAA
Statistics
Matches: 401, Mismatches: 43, Indels: 51
0.81 0.09 0.10
Matches are distributed among these distances:
146 1 0.00
147 3 0.01
148 20 0.05
149 36 0.09
150 4 0.01
151 139 0.35
152 18 0.04
153 13 0.03
154 109 0.27
155 29 0.07
156 19 0.05
157 10 0.02
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (150 bp):
AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAAAACAGAAATTGAAAACACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGATGAACAGA
Found at i:14676567 original size:229 final size:225
Alignment explanation
Indices: 14676210--14676622 Score: 648
Period size: 229 Copynumber: 1.8 Consensus size: 225
14676200 GCGTGCCCCG
*
14676210 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAACACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAACACCTCA
* * * **
14676275 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATGAACAGAAATT-
66 GCGTGTAACCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG
*
14676339 AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTGAAA
131 AAAAC-ACCTCAACATG---TGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTGAAA
14676404 AACAGACGTTGAAAACACCTCAGCGTGTGAGCCT
192 AACAGACGTTGAAAACACCTCAGCGTGTGAGCCT
* *
14676438 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAACACCTC
* * *
14676503 AGCGTGTAAGCCAATGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAAAATAGAAATT
65 AGCGTGTAACCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAAAACAGAAATT
* *
14676568 GAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
130 GAAAACACCTCAACATGTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTT
14676623 GGAAAACATA
Statistics
Matches: 169, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
226 37 0.22
228 52 0.31
229 75 0.44
230 5 0.03
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (225 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAACACCTCA
GCGTGTAACCCAAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG
AAAACACCTCAACATGTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTGAAAAACA
GACGTTGAAAACACCTCAGCGTGTGAGCCT
Found at i:14676678 original size:154 final size:155
Alignment explanation
Indices: 14676120--14676886 Score: 616
Period size: 151 Copynumber: 4.9 Consensus size: 155
14676110 GTATGTGACC
** * * **
14676120 CGAGGCTCAACTCATTTCTCGTAATATAAGTTGATTCTTGAAAAGCATAAATTGAAAAAACATTA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAA-CATAAATTG----AACAGAA
* * *
14676185 ATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
60 ATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* *
14676250 AAAAACATAAATTGAAAACACCTCAGCGTGT
125 AAAAACAGAAATTGAAAACACCTCAGCATGT
**
14676281 GACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-------TTGA-TGAACAGAAAT
1 ----CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACATAAATTGAACAGAAAT
*
14676338 T-AAAACTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTGA
62 TGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
** *
14676402 AAAACAGACGTTGAAAACACCTCAGCGTGT
126 AAAACAGAAATTGAAAACACCTCAGCATGT
* ****
14676432 GAGCCTAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC----A---AACAGAAAT
1 ----CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACATAAATTGAACAGAAAT
* * * *
14676490 TGAAAAATACCTCAGCGTGTAAGCC-AATGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTT
62 TG-AAAATACCTCAACGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
14676553 TGAAAAATAGAAATTGAAAACACCTCAGCATGT
123 TGAAAAACAGAAATTGAAAACACCTCAGCATGT
*
14676586 -GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAAAACATAAATTGAGCAGAAATTGA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-GAAAACATAAATTGAACAGAAATTGA
* * * * *
14676650 AAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTTG---AT
65 AAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
* * *
14676711 GATAAATTGAAAATACCTCA--ATGT
130 CAGAAATTGAAAACACCTCAGCATGT
* *
14676735 GACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAA
1 --C--GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTG----AAAACATAAATTG--A
* * * * * * * *
14676800 ATAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATT
54 ACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* * *
14676863 TTTTTGAAACACATAAATTAAAAA
119 TTTTTGAAAAACAGAAATTGAAAA
14676887 AAAAGAAATT
Statistics
Matches: 506, Mismatches: 58, Indels: 78
0.79 0.09 0.12
Matches are distributed among these distances:
149 40 0.08
150 6 0.01
151 147 0.29
152 10 0.02
153 13 0.03
154 107 0.21
155 32 0.06
156 23 0.05
157 10 0.02
159 48 0.09
160 8 0.02
161 17 0.03
163 11 0.02
164 2 0.00
165 32 0.06
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (155 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACATAAATTGAACAGAAATTGAA
AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAC
AGAAATTGAAAACACCTCAGCATGT
Found at i:14676902 original size:88 final size:87
Alignment explanation
Indices: 14676737--14676903 Score: 212
Period size: 88 Copynumber: 1.9 Consensus size: 87
14676727 CTCAATGTGA
* * * *
14676737 CTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAAT
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAA-TAAAACAGAAATTAAAAAA
*
14676802 AGAAATGGAAAACACCTCAGCGT
65 AGAAATGAAAAACACCTCAGCGT
* *
14676825 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTTG-A-AACACATAAATTAAAAAA
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGA-TTTTTTGAATAAAACAGAAATT--AAAA
*
14676888 AAAGAAATTAAAAACA
63 AAAGAAATGAAAAACA
14676904 GAATTTGAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
86 10 0.15
88 51 0.75
89 7 0.10
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (87 bp):
CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAATAAAACAGAAATTAAAAAAA
GAAATGAAAAACACCTCAGCGT
Found at i:14677027 original size:74 final size:73
Alignment explanation
Indices: 14676895--14677211 Score: 340
Period size: 77 Copynumber: 4.3 Consensus size: 73
14676885 AAAAAAGAAA
* ** *
14676895 TTAAAAACAGAATTTGAAAGGACCTC-GACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
1 TTAAAAACA-AAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATAT
*
14676959 GAGTTGATTCTT
62 GAGTTGATTTTT
14676971 TTAAAAAGCAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTAAAAA-CAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
14677036 TTGATTTTT
65 TTGATTTTT
* *
14677045 TTGATAAAA-ATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TT-A-AAAACA-A-AA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
14677109 TGAGTTGA-TTTT
61 TGAGTTGATTTTT
* * * ** * *
14677121 TGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTTTCGCAATATGAG
1 TTAAAAAC-AAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
14677184 TTGATTTTT
65 TTGATTTTT
* *
14677193 TT-GAAACATAAATTAAAAA
1 TTAAAAACA-AAATTGAAAA
14677212 AACGAAAATT
Statistics
Matches: 212, Mismatches: 18, Indels: 27
0.82 0.07 0.11
Matches are distributed among these distances:
70 1 0.00
71 47 0.22
72 5 0.02
73 14 0.07
74 47 0.22
75 4 0.02
76 37 0.17
77 57 0.27
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (73 bp):
TTAAAAACAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTT
Found at i:14677088 original size:77 final size:75
Alignment explanation
Indices: 14676937--14677278 Score: 372
Period size: 77 Copynumber: 4.4 Consensus size: 75
14676927 TGGCCCGAGA
* *
14676937 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTT-A-AAAAGCAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAA-AAAAATTGAAAATACCTCAGC
*
14677000 GTGTCCCGAGG
65 GTGTCCTGAGG
* *
14677011 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAA-A-AAATTGAAAATACCTCAG
14677076 CGTGTCCTGAGG
64 CGTGTCCTGAGG
* * *
14677088 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAGC-
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAAAAAATTGAAAATACCTCAGCG
*
14677150 -GTCTTGAGG
66 TGTCCTGAGG
* * **
14677159 CTCAACTCACTTTTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAACGAAAATTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG----ATAAA--AAAAAATTG--AA----
14677224 AAATACCTCAGCGTGTCCTGAGG
54 -AATACCTCAGCGTGTCCTGAGG
*
14677247 CTCAACTCACCTCTCGTAATATGAGTTGATTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTT
14677279 GAAAAGCAGA
Statistics
Matches: 225, Mismatches: 22, Indels: 28
0.82 0.08 0.10
Matches are distributed among these distances:
71 35 0.16
73 22 0.10
74 36 0.16
75 12 0.05
76 5 0.02
77 60 0.27
79 6 0.03
81 2 0.01
86 10 0.04
88 37 0.16
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (75 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAAAAAATTGAAAATACCTCAGCG
TGTCCTGAGG
Found at i:14677424 original size:13 final size:13
Alignment explanation
Indices: 14677381--14677427 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
14677371 TTGATTTTTG
14677381 AAAAATAGAAATT
1 AAAAATAGAAATT
**
14677394 AAAAGCAGAAATT
1 AAAAATAGAAATT
*
14677407 GAAAAATAAAAATT
1 -AAAAATAGAAATT
14677421 AAAAATA
1 AAAAATA
14677428 CCTCGGCGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 18 0.64
14 10 0.36
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.19
Consensus pattern (13 bp):
AAAAATAGAAATT
Found at i:14677446 original size:100 final size:101
Alignment explanation
Indices: 14677209--14677498 Score: 379
Period size: 100 Copynumber: 2.9 Consensus size: 101
14677199 CATAAATTAA
* * *
14677209 AAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
14677274 GA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* *
14677308 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
14677373 GATTTTTGAAAAATAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * * * *
14677408 AAAAATAAAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATAAGTT
1 AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
14677473 GATTTTTGAAAAGCATAAATTAAAAA
66 GATTTTTGAAAAACAGAAATTGAAAA
14677499 TACCTCGGCG
Statistics
Matches: 166, Mismatches: 22, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
99 62 0.37
100 86 0.52
101 18 0.11
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (101 bp):
AAAAACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:14677524 original size:73 final size:73
Alignment explanation
Indices: 14677416--14677646 Score: 390
Period size: 73 Copynumber: 3.1 Consensus size: 73
14677406 TGAAAAATAA
14677416 AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATAAGTTGATTTTTG
1 AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATAAGTTGATTTTTG
14677481 AAAAGCAT
66 AAAAGCAT
14677489 AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATAAGTTGATTTTTG
1 AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATAAGTTGATTTTTG
14677554 AAAAGCAT
66 AAAAGCAT
* * * * * *
14677562 AAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATAAGTTGA-TTTTT
14677627 GAAAAGCAT
65 GAAAAGCAT
14677636 AAATTGAAAAA
1 AAATT-AAAAA
14677647 ACGAAAATTG
Statistics
Matches: 149, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
73 126 0.85
74 19 0.13
75 4 0.03
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (73 bp):
AAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATAAGTTGATTTTTG
AAAAGCAT
Found at i:14677745 original size:91 final size:89
Alignment explanation
Indices: 14677562--14677731 Score: 263
Period size: 91 Copynumber: 1.9 Consensus size: 89
14677552 TGAAAAGCAT
*
14677562 AAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTAAAATTACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
14677627 GAAAAGCATAAATTGAAAAAACGA
66 GAAAAGCAGAAATTGAAAAAACGA
14677651 AAATTGAAAA-TACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATT-AAAATTACCTCAGCGTGT--CCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TT
14677715 TTTTG-AAAGACAGAAAT
62 TTTTGAAAAG-CAGAAAT
14677732 AAAAACATCA
Statistics
Matches: 74, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
89 18 0.24
90 4 0.05
91 39 0.53
92 13 0.18
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (89 bp):
AAATTAAAATTACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAGCAGAAATTGAAAAAACGA
Found at i:14684690 original size:16 final size:15
Alignment explanation
Indices: 14684664--14684698 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
14684654 TGATGTGAAT
14684664 AATATAAAATATTAA
1 AATATAAAATATTAA
*
14684679 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
14684695 AATA
1 AATA
14684699 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:14684868 original size:20 final size:20
Alignment explanation
Indices: 14684811--14684870 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
14684801 AATACTACAT
14684811 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
14684830 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
14684853 AAATATGTACATAATATA
1 AAATATGTACATAATATA
14684871 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:14684909 original size:22 final size:22
Alignment explanation
Indices: 14684811--14684945 Score: 71
Period size: 25 Copynumber: 5.9 Consensus size: 22
14684801 AATACTACAT
*
14684811 AAATATGTACAT-ATATAA--A
1 AAATATATACATAATATAATTA
* * *
14684830 AAATAAATACGTGATA-ATATTAA
1 AAATATATACATAATATA-ATT-A
* *
14684853 AAATATGTACATAATATAGTGTAAA
1 AAATATATACATAATATAAT-T--A
*
14684878 AAATACATACATAATATAATTA
1 AAATATATACATAATATAATTA
*
14684900 AAATATATACATAAGATAACATGTA
1 AAATATATACATAATAT-A-AT-TA
*
14684925 AATATATATATATATATATAA
1 AA-ATATATACATA-ATATAA
14684946 ATAATATAGT
Statistics
Matches: 88, Mismatches: 15, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
19 10 0.11
20 4 0.05
22 16 0.18
23 15 0.17
24 5 0.06
25 24 0.27
26 11 0.12
27 3 0.03
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (22 bp):
AAATATATACATAATATAATTA
Found at i:14684974 original size:25 final size:25
Alignment explanation
Indices: 14684938--14685069 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
14684928 ATATATATAT
*
14684938 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
14684963 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
14684988 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
*
14685012 A-ATATACCT-A-ATA-TATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
14685033 A-ATATATATATATATAATATT-AAG
1 ATATATACATA-ATATAGTATTAAAG
*
14685057 AAATATA-ATAATA
1 ATATATACATAATA
14685070 ACAAAAAAAA
Statistics
Matches: 86, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
20 3 0.03
21 12 0.14
22 1 0.01
23 11 0.13
24 15 0.17
25 43 0.50
26 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:14684993 original size:50 final size:47
Alignment explanation
Indices: 14684924--14685052 Score: 123
Period size: 50 Copynumber: 2.6 Consensus size: 47
14684914 GATAACATGT
*
14684924 AAATATATATATATATATATAAATAATATAGTATTAAAGATATATACATA
1 AAATATATA-ATATATATATAAATAATATAGAATT-AAGA-ATATACATA
** * *
14684974 AAATAGTATAATATATATATACGTAATATAGAATTTAGAATATACCTA
1 AAATA-TATAATATATATATAAATAATATAGAATTAAGAATATACATA
* * *
14685022 ATATATTAAAGAATATATATATATATAATAT
1 A-A-A-TATATAATATATATATAAATAATAT
14685053 TAAGAAATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
48 9 0.14
49 4 0.06
50 47 0.71
51 6 0.09
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.38
Consensus pattern (47 bp):
AAATATATAATATATATATAAATAATATAGAATTAAGAATATACATA
Found at i:14686157 original size:13 final size:14
Alignment explanation
Indices: 14686141--14686176 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
14686131 CAATCTCATA
14686141 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
14686154 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
14686167 TCTC-ATTTCA
1 TCTCAATTTCA
14686177 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:14686166 original size:18 final size:19
Alignment explanation
Indices: 14686128--14686168 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
14686118 TGGTTCATGT
14686128 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
14686147 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
14686165 TTTC
1 TTTC
14686169 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:14686358 original size:39 final size:38
Alignment explanation
Indices: 14686291--14686425 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
14686281 ACCAATATGG
* * *
14686291 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
14686330 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
14686368 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
14686409 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
14686426 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:14686691 original size:18 final size:19
Alignment explanation
Indices: 14686665--14686703 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
14686655 TTTCAATTCA
14686665 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
14686684 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
14686702 AT
1 AT
14686704 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:14688009 original size:5 final size:5
Alignment explanation
Indices: 14687999--14688051 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
14687989 TTACTTATTT
* *
14687999 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
14688047 ATATA
1 ATATA
14688052 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:14688015 original size:12 final size:12
Alignment explanation
Indices: 14687998--14688053 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
14687988 TTTACTTATT
14687998 TATATAATATAA
1 TATATAATATAA
14688010 TATATAATATAATA
1 TATATAATAT-A-A
14688024 TACTATAATATAA
1 TA-TATAATATAA
*
14688037 TA-ATAATTTAA
1 TATATAATATAA
14688048 TATATA
1 TATATA
14688054 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:14692587 original size:13 final size:14
Alignment explanation
Indices: 14692571--14692606 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
14692561 CAATCTCATA
14692571 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
14692584 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
14692597 TCTC-ATTTCA
1 TCTCAATTTCA
14692607 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:14692596 original size:18 final size:19
Alignment explanation
Indices: 14692558--14692598 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
14692548 TGGTTCATGT
14692558 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
14692577 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
14692595 TTTC
1 TTTC
14692599 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:14692788 original size:39 final size:38
Alignment explanation
Indices: 14692721--14692855 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
14692711 ACCAATATGG
* * *
14692721 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
14692760 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
14692798 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
14692839 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
14692856 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:14693121 original size:18 final size:19
Alignment explanation
Indices: 14693095--14693133 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
14693085 TTTCAATTCA
14693095 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
14693114 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
14693132 AT
1 AT
14693134 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:14694461 original size:5 final size:5
Alignment explanation
Indices: 14694451--14694500 Score: 66
Period size: 5 Copynumber: 10.0 Consensus size: 5
14694441 TTACTTATTT
* *
14694451 ATATA ATATA ATAT- ATATA ATATA CTATA ATATA ATAATA ATTTA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA
14694501 TATTTTAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
4 4 0.10
5 30 0.77
6 5 0.13
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:14699036 original size:13 final size:14
Alignment explanation
Indices: 14699020--14699055 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
14699010 CAATCTCATA
14699020 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
14699033 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
14699046 TCTC-ATTTCA
1 TCTCAATTTCA
14699056 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:14699045 original size:18 final size:19
Alignment explanation
Indices: 14699007--14699047 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
14698997 TGGTTCATGT
14699007 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
14699026 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
14699044 TTTC
1 TTTC
14699048 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:14699237 original size:39 final size:38
Alignment explanation
Indices: 14699170--14699304 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
14699160 ACCAATATGG
* * *
14699170 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
14699209 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
14699247 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
14699288 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
14699305 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:14699570 original size:18 final size:19
Alignment explanation
Indices: 14699544--14699582 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
14699534 TTTCAATTCA
14699544 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
14699563 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
14699581 AT
1 AT
14699583 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:14700903 original size:5 final size:5
Alignment explanation
Indices: 14700893--14700945 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
14700883 TTACTTATTT
* *
14700893 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
14700941 ATATA
1 ATATA
14700946 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:14700909 original size:12 final size:12
Alignment explanation
Indices: 14700892--14700947 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
14700882 TTTACTTATT
14700892 TATATAATATAA
1 TATATAATATAA
14700904 TATATAATATAATA
1 TATATAATAT-A-A
14700918 TACTATAATATAA
1 TA-TATAATATAA
*
14700931 TA-ATAATTTAA
1 TATATAATATAA
14700942 TATATA
1 TATATA
14700948 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:14701507 original size:30 final size:30
Alignment explanation
Indices: 14701417--14701515 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
14701407 TAGGTACAAG
14701417 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
14701447 AGGTAGTAGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
14701477 TGGCGGTGGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
14701507 TGGTGGTGG
1 TGGTGGTGG
14701516 CAAATGCTAG
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:14702671 original size:16 final size:14
Alignment explanation
Indices: 14702650--14702683 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 14
14702640 ATTGGACAAT
14702650 TTATAAATGTTATATA
1 TTATAAAT-TT-TATA
14702666 TTATAAATTTTATA
1 TTATAAATTTTATA
14702680 TTAT
1 TTAT
14702684 TTTTTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 2 0.11
16 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TTATAAATTTTATA
Found at i:14704317 original size:25 final size:24
Alignment explanation
Indices: 14704288--14704349 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
14704278 TTCTTGTTTT
*
14704288 AATATTTTATTT-TTATGTTTTTAA
1 AATATTTTATTTATTAT-ATTTTAA
*
14704312 ATATATTTAATTTATTATATTTTAA
1 A-ATATTTTATTTATTATATTTTAA
*
14704337 AATTTTTTATTTA
1 AATATTTTATTTA
14704350 ATAAAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 11 0.34
25 17 0.53
26 4 0.12
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
AATATTTTATTTATTATATTTTAA
Found at i:14704339 original size:26 final size:25
Alignment explanation
Indices: 14704289--14704339 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
14704279 TCTTGTTTTA
* * *
14704289 ATATTTTATTTTTATGTTTTTAAAT
1 ATATTTAATTTTTATATTTTAAAAT
14704314 ATATTTAATTTATTATATTTTAAAAT
1 ATATTTAATTT-TTATATTTTAAAAT
14704340 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (25 bp):
ATATTTAATTTTTATATTTTAAAAT
Found at i:14704360 original size:20 final size:20
Alignment explanation
Indices: 14704337--14704379 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
14704327 TATATTTTAA
14704337 AATTTTTTATTTAATAAAAT
1 AATTTTTTATTTAATAAAAT
*
14704357 AATTTTTTATTTAATGAAAT
1 AATTTTTTATTTAATAAAAT
14704377 AAT
1 AAT
14704380 CTAAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
AATTTTTTATTTAATAAAAT
Found at i:14712443 original size:39 final size:39
Alignment explanation
Indices: 14712400--14712481 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
14712390 TACAGATCCA
14712400 ATTACAGGGGAATAAGGGATGCGGAAAAAGAAGGATTAT
1 ATTACAGGGGAATAAGGGATGCGGAAAAAGAAGGATTAT
14712439 ATTACAGGGGAATAAGGGATGCGGAAAAAGAAGGATTAT
1 ATTACAGGGGAATAAGGGATGCGGAAAAAGAAGGATTAT
14712478 ATTA
1 ATTA
14712482 TTACAAGGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.44, C:0.05, G:0.32, T:0.20
Consensus pattern (39 bp):
ATTACAGGGGAATAAGGGATGCGGAAAAAGAAGGATTAT
Found at i:14727897 original size:44 final size:43
Alignment explanation
Indices: 14727849--14727977 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
14727839 ATCGACAATG
* * *
14727849 GAACAGATTTAAGCCTCAAGCTTTATCTCTCTGAGGTAGCAAGA
1 GAACAGATTAAAG-ATCAAGCCTTATCTCTCTGAGGTAGCAAGA
*
14727893 GAACAGGTTAAAGATCAAGCCTTATCTCTCTGAGGTAGCAAGA
1 GAACAGATTAAAGATCAAGCCTTATCTCTCTGAGGTAGCAAGA
* * ** *
14727936 GAGCAGGTTGAAA-ATTGAGTCTTATCT-TCCTGAGGTAGCAAG
1 GAACAGATT-AAAGATCAAGCCTTATCTCT-CTGAGGTAGCAAG
14727978 GAAGCAAACT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.01
43 60 0.80
44 14 0.19
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (43 bp):
GAACAGATTAAAGATCAAGCCTTATCTCTCTGAGGTAGCAAGA
Found at i:14727920 original size:43 final size:43
Alignment explanation
Indices: 14727864--14727977 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
14727854 GATTTAAGCC
*
14727864 TCAAGCTTTATCTCTCTGAGGTAGCAAGAGAACAGGTT-AAAGA
1 TCAAGCCTTATCTCTCTGAGGTAGCAAGAGAACAGGTTGAAA-A
*
14727907 TCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAA
1 TCAAGCCTTATCTCTCTGAGGTAGCAAGAGAACAGGTTGAAAA
** *
14727950 TTGAGTCTTATCT-TCCTGAGGTAGCAAG
1 TCAAGCCTTATCTCT-CTGAGGTAGCAAG
14727978 GAAGCAAACT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.02
43 60 0.94
44 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (43 bp):
TCAAGCCTTATCTCTCTGAGGTAGCAAGAGAACAGGTTGAAAA
Found at i:14727996 original size:43 final size:46
Alignment explanation
Indices: 14727913--14728007 Score: 110
Period size: 43 Copynumber: 2.2 Consensus size: 46
14727903 AAGATCAAGC
***
14727913 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATTG-AG-T
1 CTTATCTTCTCTGAGGTAGCAAGAGAGCAAACTGAAAATTGAAGAT
*
14727956 CTTATCTTC-CTGAGGTAGCAAG-GAAGCAAACTGAATATTGAAGAT
1 CTTATCTTCTCTGAGGTAGCAAGAG-AGCAAACTGAAAATTGAAGAT
14728001 CTTATCT
1 CTTATCT
14728008 CCCTAAGCAG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
42 1 0.02
43 31 0.70
44 4 0.09
45 8 0.18
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGAGAGCAAACTGAAAATTGAAGAT
Found at i:14728179 original size:43 final size:45
Alignment explanation
Indices: 14728132--14728238 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 45
14728122 AAGATCAAGC
* *
14728132 CTTATCTCTCTAAGGTAGTAAGAAAGCAGGTTGAGGATTG-AG-T
1 CTTATCTCTCTAAGGTAGTAAGAAAGCAGATTGAAGATTGTAGAT
* * ** *
14728175 CTTATCTTTCTGAGGTAACAAGGAAGCAGATTGAAGATTGTAGAT
1 CTTATCTCTCTAAGGTAGTAAGAAAGCAGATTGAAGATTGTAGAT
*
14728220 CTTATCTCCCTAA-GTAGTA
1 CTTATCTCTCTAAGGTAGTA
14728239 GTGGAGTAGA
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
43 33 0.66
44 6 0.12
45 11 0.22
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (45 bp):
CTTATCTCTCTAAGGTAGTAAGAAAGCAGATTGAAGATTGTAGAT
Found at i:14728182 original size:219 final size:218
Alignment explanation
Indices: 14727779--14728411 Score: 845
Period size: 219 Copynumber: 2.9 Consensus size: 218
14727769 GTAAAGTCAA
* * * * *
14727779 ATCTTATCTCCCTAAAGTTGCAGCGGAGTAGATCGGAAAAGGCAAATCTTATCTCCATGTATCGA
1 ATCTTATCTCCCT-AAGTAGTAGTGGAGTAGATCGGAAGAGGCGAATCTTATCTCCATGTATCGA
* * * *
14727844 CAATGGAACAGATTTAAGCCTCAAGCTTTATCTCTCTGAGGTAGCAAGAGAACAGGTTAAAGATC
65 -AATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATC
* * * *
14727909 AAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATTGAGTCTTATCTTCCTGAGGTAG
129 AAGCCTTATCTCTCTAAGGTAGCAAGAAAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAA
*
14727974 CAAGGAAGCAAACTGAATATTGAAG
194 CAAGGAAGCAAACTGAAGATTGAAG
* *
14727999 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGGAAGAGGCGGATCTTATCTCCATGTATCAGA
1 ATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGGAAGAGGCGAATCTTATCTCCATGTATC-GA
* * * *
14728064 AATAGAGCAGATTTAAGCCCCAAGCCTTATCTATCTGAGGTAGCAAAAGAGTAGGTTAAAGATCA
65 AATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATCA
* * *
14728129 AGCCTTATCTCTCTAAGGTAGTAAGAAAGCAGGTTGAGGATTGAGTCTTATCTTTCTGAGGTAAC
130 AGCCTTATCTCTCTAAGGTAGCAAGAAAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAAC
* * *
14728194 AAGGAAGCAGATTGAAGATTGTAG
195 AAGGAAGCAAACTGAAGATTGAAG
* * * *
14728218 ATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGAAAGAGGTGAATTTTATCTCCATGTATCGGC
1 ATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGGAAGAGGCGAATCTTATCTCCATGTATC-GA
* *
14728283 AATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAAT-
65 AATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAG-ATC
* * * ** * *
14728347 GAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAGGT
129 AAGCCTTATCTCTCTAAGGTAGCAAGAAAGCAGGTTGAAGATTG-AG-TCTTATCTTCCTGAGGT
14728412 TGCAGTGGAG
Statistics
Matches: 360, Mismatches: 49, Indels: 7
0.87 0.12 0.02
Matches are distributed among these distances:
219 326 0.91
220 19 0.05
221 15 0.04
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (218 bp):
ATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGGAAGAGGCGAATCTTATCTCCATGTATCGAA
ATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATCAA
GCCTTATCTCTCTAAGGTAGCAAGAAAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAACA
AGGAAGCAAACTGAAGATTGAAG
Found at i:14728503 original size:177 final size:177
Alignment explanation
Indices: 14728131--14728834 Score: 993
Period size: 177 Copynumber: 4.0 Consensus size: 177
14728121 AAAGATCAAG
* * * * *
14728131 CCTTATCTCTCTAAGGTAGTAAGAAAGCAGGTTGAGGATTGAGTCTTATCTTTCTGAGGTAACAA
1 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAA
* * * * * *
14728196 GGAAGCAGATTGAAGATTGTAGATCTTATCTCCCT-AAGTAGTAGTGGAGTAGATCGAAAGA-GG
66 GAAAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCG-AAGATGG
* *
14728259 TGAATTTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCC-CCAA
130 CGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAA
*
14728306 GCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCA
1 -CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCA
*
14728371 AGAAAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAGGTTGCAGTGGAGTAGATCGAAGATGG
65 AGAAAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATGG
*
14728436 CGAATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCACCAA
130 CGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAA
* * * * *
14728484 CCTTATCTCTCTGAGGTAGCAGGAGAGCAGGTTAAAGATTGAGTCTTATCTTTCCGAGGTAGCAA
1 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAA
* *
14728549 GAAAGCAGACTGAAGATTA-AAGATCTTATCTCCCTGAGGTTGCAGTGGAGTAGATCGAAAATGG
66 GAAAGCAGACTGAAGA-TAGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATGG
* * * *
14728613 TGAATCTTATCTCCATATATCGACAATGGAGCAGATTTAAGCCACCAG
130 CGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAA
* *
14728661 TCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAA
1 CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAA
* * * * * *
14728726 GAAAGCAGACTGAACATTGAAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATCGAATATGTC
66 GAAAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATGGC
* * * * *
14728791 AAATCTTATCTCCATGTATCGGTACTGGAGTAGATTTTAGCCAC
131 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCAC
14728835 TAGCATTATC
Statistics
Matches: 475, Mismatches: 48, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
176 95 0.20
177 374 0.79
178 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (177 bp):
CCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAA
GAAAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATGGC
GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAA
Found at i:14728565 original size:43 final size:43
Alignment explanation
Indices: 14728485--14728588 Score: 102
Period size: 43 Copynumber: 2.4 Consensus size: 43
14728475 AGCCACCAAC
* * * **
14728485 CTTATCTCTCTGAGGTAGCAGGAGAGCAGGTTAAAGATTGAGT
1 CTTATCTCTCCGAGGTAGCAAGAAAGCAGACTAAAGATTGAGT
* * *
14728528 CTTATCTTTCCGAGGTAGCAAGAAAGCAGACTGAAGATTAAAGAT
1 CTTATCTCTCCGAGGTAGCAAGAAAGCAGACTAAAGATT-GAG-T
14728573 CTTATCTC-CCTGAGGT
1 CTTATCTCTCC-GAGGT
14728589 TGCAGTGGAG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
43 32 0.65
44 4 0.08
45 13 0.27
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (43 bp):
CTTATCTCTCCGAGGTAGCAAGAAAGCAGACTAAAGATTGAGT
Found at i:14728916 original size:134 final size:134
Alignment explanation
Indices: 14728706--14728948 Score: 328
Period size: 134 Copynumber: 1.8 Consensus size: 134
14728696 AGAATGAGTC
* * * **
14728706 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAACATTGAAGATCTTATCTTCCTGAAGTTGCAG
1 TTATCTTTCTGAGATAGCAAAAAAGCAGACTGAACATTGAAAATCTTATCTTCCTGAAGCAGCAG
* *
14728771 TGGAGCAGATCGAATA-TGTCAAATCTTATCTCCATGTATCGGTACTGGAGTAGATTTTAGCCAC
66 TGGAGCAGATCGAA-AGAGGCAAATCTTATCTCCATGTATCGGTACTGGAGTAGATTTTAGCCAC
14728835 TAGCA
130 TAGCA
* * * **
14728840 TTATCTTTTTGAGATAGCAAAAGAAGTAGACTGAAGATTGAAAATCTTATCTTCCT-AAGCAGTT
1 TTATCTTTCTGAGATAGCAAAA-AAGCAGACTGAACATTGAAAATCTTATCTTCCTGAAGCAGCA
* *
14728904 GTGGAGCAGATCGAAAGAGGCGAATGTTATCTCCATGTATCGGTA
65 GTGGAGCAGATCGAAAGAGGCAAATCTTATCTCCATGTATCGGTA
14728949 ATAGAGCGGA
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
133 1 0.01
134 62 0.67
135 30 0.32
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (134 bp):
TTATCTTTCTGAGATAGCAAAAAAGCAGACTGAACATTGAAAATCTTATCTTCCTGAAGCAGCAG
TGGAGCAGATCGAAAGAGGCAAATCTTATCTCCATGTATCGGTACTGGAGTAGATTTTAGCCACT
AGCA
Found at i:14728917 original size:311 final size:308
Alignment explanation
Indices: 14728529--14729145 Score: 728
Period size: 311 Copynumber: 2.0 Consensus size: 308
14728519 AGATTGAGTC
* * *
14728529 TTATCTTTCCGAGGTAGCAAGAAAGCAGACTGAAGATTAAAGATCTTATCTCCCTGAGGTTGCAG
1 TTATCTTTCCGAGATAGCAAAAAAGCAGACTGAAGATTAAAGATCTTATCTCCCTAAGGTT--AG
* * *
14728594 TGGAGTAGATCGAAA-ATGGTGAATCTTATCTCCATATATCGACAATGGAGCAGATTTAAGCCAC
64 TGGAGCAGATCGAAAGA-GGCGAATCTTATCTCCATATATCGACAATAGAGCAGATTTAAGCC-C
* * * * *
14728658 C-AGTCTTATCTCTCTGAGGTAGCAAG-AGAGCAGGTTGAAGAAT-GAGTCTTATCTTTCTGAGG
127 CAAGCCTTATCTCTCTGAAGTAGC-AGTAGAGCAGGTTCAA-AATAAAGTCTTATCTTCCTGAGG
* **
14728720 TAGCAAGAAAGCAGACTGAACATTGAAGATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATCGA
190 TAGCAAGAAAGCAGACTAAACATTGAAGATCTTATC-TCCGT-AAGCAGCAGTGGAGCAGATCGA
* * * * *
14728784 ATA-TGTCAAATCTTATCTCCATGTATCGGTACTGGAGTAGATTTTAGCCACTAGCA
253 A-AGAGGCAAATCTTATCTCCATGTATCGGCAATGGAGTAGATTTAAGCCACTAGCA
** * *
14728840 TTATCTTTTTGAGATAGCAAAAGAAGTAGACTGAAGATTGAAA-ATCTTATCTTCCTAAGCAGTT
1 TTATCTTTCCGAGATAGCAAAA-AAGCAGACTGAAGATT-AAAGATCTTATCTCCCTAAG--GTT
* * ** *
14728904 -GTGGAGCAGATCGAAAGAGGCGAATGTTATCTCCATGTATCGGTAATAGAGCGGATTTAAGCCC
62 AGTGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATATATCGACAATAGAGCAGATTTAAGCCC
* *
14728968 CAAGCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTCAAAATACAAGTCTTATCTTCCTGAGGT
127 CAAGCCTTATCTCTCTGAAGTAGCAGTAGAGCAGGTTCAAAATA-AAGTCTTATCTTCCTGAGGT
* * * *
14729033 AGTAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCGTAAGCAGTAGTGGAGCAGATCGAAAG
191 AGCAAGAAAGCAGACTAAACATTGAAGATCTTATCTCCGTAAGCAGCAGTGGAGCAGATCGAAAG
* *
14729098 AGGCGAATCTTATTTCCATGTATCGGCAATGGAGTAGATTTAAGCCAC
256 AGGCAAATCTTATCTCCATGTATCGGCAATGGAGTAGATTTAAGCCAC
14729146 CAAGCCTTAT
Statistics
Matches: 259, Mismatches: 36, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
310 8 0.03
311 165 0.64
312 80 0.31
313 3 0.01
314 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (308 bp):
TTATCTTTCCGAGATAGCAAAAAAGCAGACTGAAGATTAAAGATCTTATCTCCCTAAGGTTAGTG
GAGCAGATCGAAAGAGGCGAATCTTATCTCCATATATCGACAATAGAGCAGATTTAAGCCCCAAG
CCTTATCTCTCTGAAGTAGCAGTAGAGCAGGTTCAAAATAAAGTCTTATCTTCCTGAGGTAGCAA
GAAAGCAGACTAAACATTGAAGATCTTATCTCCGTAAGCAGCAGTGGAGCAGATCGAAAGAGGCA
AATCTTATCTCCATGTATCGGCAATGGAGTAGATTTAAGCCACTAGCA
Found at i:14728961 original size:134 final size:134
Alignment explanation
Indices: 14728706--14728985 Score: 321
Period size: 134 Copynumber: 2.1 Consensus size: 134
14728696 AGAATGAGTC
* * * **
14728706 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAACATTGAAGATCTTATCTTCCTGAAGTTGCAG
1 TTATCTTTCTGAGATAGCAAAAAAGCAGACTGAACATTGAAAATCTTATCTTCCTGAAGCAGCAG
* * * * * *
14728771 TGGAGCAGATCGAATATGTCAAATCTTATCTCCATGTATCGGTACTGGAGTAGATTTTAGCCACT
66 TGGAGCAGATCGAATAAGGCAAATCTTATCTCCATGTATCGGTAATAGAGCAGATTTAAGCCACT
14728836 AGCA
131 AGCA
* * * **
14728840 TTATCTTTTTGAGATAGCAAAAGAAGTAGACTGAAGATTGAAAATCTTATCTTCCT-AAGCAGTT
1 TTATCTTTCTGAGATAGCAAAA-AAGCAGACTGAACATTGAAAATCTTATCTTCCTGAAGCAGCA
* * * *
14728904 GTGGAGCAGATCGAA-AGAGGCGAATGTTATCTCCATGTATCGGTAATAGAGCGGATTTAAGCCC
65 GTGGAGCAGATCGAATA-AGGCAAATCTTATCTCCATGTATCGGTAATAGAGCAGATTTAAGCCA
* *
14728968 CAAGCC
129 CTAGCA
*
14728974 TTATCTCTCTGA
1 TTATCTTTCTGA
14728986 AGTTGCAGTG
Statistics
Matches: 120, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
133 1 0.01
134 89 0.74
135 30 0.25
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (134 bp):
TTATCTTTCTGAGATAGCAAAAAAGCAGACTGAACATTGAAAATCTTATCTTCCTGAAGCAGCAG
TGGAGCAGATCGAATAAGGCAAATCTTATCTCCATGTATCGGTAATAGAGCAGATTTAAGCCACT
AGCA
Found at i:14729068 original size:177 final size:178
Alignment explanation
Indices: 14728862--14729185 Score: 508
Period size: 177 Copynumber: 1.8 Consensus size: 178
14728852 GATAGCAAAA
* * *
14728862 GAAGTAGACTGAAGATTGAAAATCTTATCTTCC-TAAGCAGTTGTGGAGCAGATCGAAAGAGGCG
1 GAAGCAGACTAAAGATTGAAAATCTTATC-TCCGTAAGCAGTAGTGGAGCAGATCGAAAGAGGCG
* * * * *
14728926 AATGTTATCTCCATGTATCGGTAATAGAGCGGATTTAAGCC-CCAAGCCTTATCTCTCTGAAGTT
65 AATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAAGTG
*
14728990 GCAGTGGAGCAGGTTCAAAATACAAGTCTTATCTTCCTGAGGTAGTAAG
130 GCAATGGAGCAGGTTCAAAATACAAGTCTTATCTTCCTGAGGTAGTAAG
*
14729039 GAAGCAGACTAAAGATTGAAGATCTTATCTCCGTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGA
1 GAAGCAGACTAAAGATTGAAAATCTTATCTCCGTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGA
* * *
14729104 ATCTTATTTCCATGTATCGGCAATGGAGTAGATTTAAGCCACCAAGCCTTATCTCCCTGAAGTGG
66 ATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAAGTGG
14729169 CAATGGAGCAGGTTCAA
131 CAATGGAGCAGGTTCAA
14729186 GTGAAGCAGG
Statistics
Matches: 132, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
176 3 0.02
177 91 0.69
178 38 0.29
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (178 bp):
GAAGCAGACTAAAGATTGAAAATCTTATCTCCGTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGA
ATCTTATCTCCATGTATCGGCAATAGAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAAGTGG
CAATGGAGCAGGTTCAAAATACAAGTCTTATCTTCCTGAGGTAGTAAG
Found at i:14731164 original size:17 final size:17
Alignment explanation
Indices: 14731135--14731167 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14731125 TTTCATATAT
*
14731135 TATTATCTTTATGTATG
1 TATTATCTATATGTATG
14731152 TATTATCTATATGTAT
1 TATTATCTATATGTAT
14731168 CATTAATCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (17 bp):
TATTATCTATATGTATG
Found at i:14731319 original size:19 final size:18
Alignment explanation
Indices: 14731295--14731330 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14731285 CCATGTATTT
*
14731295 TATACATATAGTTTTTTTG
1 TATACATA-AATTTTTTTG
14731314 TATACATAAATTTTTTT
1 TATACATAAATTTTTTT
14731331 AAAAATTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.58
Consensus pattern (18 bp):
TATACATAAATTTTTTTG
Found at i:14736462 original size:35 final size:35
Alignment explanation
Indices: 14736416--14736486 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
14736406 AAGGTTGATG
14736416 TTGGATAATGTGTTGTTAGCTTATAAAATTCTACA
1 TTGGATAATGTGTTGTTAGCTTATAAAATTCTACA
*
14736451 TTGGATAATGTGTTGTTAGCTTATGAAATTCTACA
1 TTGGATAATGTGTTGTTAGCTTATAAAATTCTACA
14736486 T
1 T
14736487 ACTCTCAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (35 bp):
TTGGATAATGTGTTGTTAGCTTATAAAATTCTACA
Found at i:14740368 original size:11 final size:11
Alignment explanation
Indices: 14740348--14740378 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
14740338 TTGTTTTTCT
14740348 TTATTT-TTTA
1 TTATTTATTTA
14740358 TTATTTATTTA
1 TTATTTATTTA
14740369 TTATTTATTT
1 TTATTTATTT
14740379 TATAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:14740410 original size:9 final size:10
Alignment explanation
Indices: 14740374--14740420 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
14740364 ATTTATTATT
14740374 TATTTTATAA
1 TATTTTATAA
*
14740384 TATTTTAAATGTA
1 TATTTT--AT-AA
14740397 TATTTTA-AA
1 TATTTTATAA
14740406 TATTTTATAA
1 TATTTTATAA
14740416 TATTT
1 TATTT
14740421 ATTTATTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
9 8 0.26
10 13 0.42
11 1 0.03
12 2 0.06
13 7 0.23
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
TATTTTATAA
Found at i:14740423 original size:23 final size:23
Alignment explanation
Indices: 14740370--14740424 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
14740360 ATTTATTTAT
14740370 TATTTATTTTATAATATTTTAAA
1 TATTTATTTTATAATATTTTAAA
* *
14740393 TGTATATTTTA-AATATTTTATAA
1 TATTTATTTTATAATATTTTA-AA
14740416 TATTTATTT
1 TATTTATTT
14740425 ATTCAAACGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TATTTATTTTATAATATTTTAAA
Found at i:14740506 original size:22 final size:23
Alignment explanation
Indices: 14740463--14740509 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
14740453 ATTTATTTAT
*
14740463 AATATTTTAAAAAAATTAAAATA
1 AATATTATAAAAAAATTAAAATA
14740486 AATATTATAAAACAAA-T-AAATA
1 AATATTATAAAA-AAATTAAAATA
14740508 AA
1 AA
14740510 CAAATGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 12 0.55
24 3 0.14
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
AATATTATAAAAAAATTAAAATA
Found at i:14742928 original size:40 final size:41
Alignment explanation
Indices: 14742800--14742933 Score: 107
Period size: 40 Copynumber: 3.3 Consensus size: 41
14742790 ATTTATTAAG
* ** * *
14742800 TTTTATTAAAAAATATTATGAATTAATT-AAAAGCACAAAA
1 TTTTATTAAAAATTATTAAAAATTAATTAAAAATCATAAAA
***
14742840 TTTTATTAAGTTTTATTAAAAA--AATTAAAAAAT-ATGAAAAA
1 TTTTATTAAAAATTATTAAAAATTAATT-AAAAATCAT--AAAA
14742881 TAATTTA-TAAAAATTATTAAAAATTAATTAAAAATCATAAAA
1 T--TTTATTAAAAATTATTAAAAATTAATTAAAAATCATAAAA
*
14742923 TTTTATGAAAA
1 TTTTATTAAAA
14742934 TTAAATTATT
Statistics
Matches: 72, Mismatches: 12, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
38 4 0.06
39 1 0.01
40 24 0.33
41 9 0.12
42 18 0.25
43 10 0.14
44 6 0.08
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (41 bp):
TTTTATTAAAAATTATTAAAAATTAATTAAAAATCATAAAA
Found at i:14743529 original size:18 final size:18
Alignment explanation
Indices: 14743506--14743540 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14743496 TTTTAAGAAT
*
14743506 TACTTTTGACATAAAAAG
1 TACTTTTAACATAAAAAG
14743524 TACTTTTAACATAAAAA
1 TACTTTTAACATAAAAA
14743541 TATTGTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (18 bp):
TACTTTTAACATAAAAAG
Found at i:14747427 original size:13 final size:13
Alignment explanation
Indices: 14747409--14747433 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14747399 ATAAATTATA
14747409 ATAATATAATAAT
1 ATAATATAATAAT
14747422 ATAATATAATAA
1 ATAATATAATAA
14747434 AACATAAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATATAATAAT
Found at i:14749931 original size:71 final size:71
Alignment explanation
Indices: 14749843--14750006 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
14749833 GAGATGTATC
14749843 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
14749908 AGGACA
66 AGGACA
*
14749914 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
14749979 CGGACA
66 AGGACA
14749985 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
14750007 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:14763813 original size:14 final size:14
Alignment explanation
Indices: 14763794--14763820 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14763784 CGCTTTGAAA
14763794 TTTTATTTTTTTAT
1 TTTTATTTTTTTAT
14763808 TTTTATTTTTTTA
1 TTTTATTTTTTTA
14763821 AAAGGGAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTATTTTTTTAT
Found at i:14763920 original size:19 final size:19
Alignment explanation
Indices: 14763896--14763933 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14763886 GAAATGAATA
*
14763896 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
14763915 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
14763934 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:14764209 original size:2 final size:2
Alignment explanation
Indices: 14764202--14764233 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14764192 GTAGCTAAAT
14764202 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14764234 CATAAACAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14769643 original size:2 final size:2
Alignment explanation
Indices: 14769636--14769667 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
14769626 TTCAATTATG
14769636 TA TA TA TA TA TA TA TA TA TA TA -A TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14769668 ATAAAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:14769971 original size:17 final size:17
Alignment explanation
Indices: 14769949--14769993 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
14769939 GAGGTTAGGT
14769949 TTTTTTCTTTTTCTTCA
1 TTTTTTCTTTTTCTTCA
* *
14769966 TTTTTTCTTTTTTTTTA
1 TTTTTTCTTTTTCTTCA
*
14769983 TTTTTTATTTT
1 TTTTTTCTTTT
14769994 GGGTTGTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTCTTTTTCTTCA
Found at i:14771596 original size:18 final size:18
Alignment explanation
Indices: 14771573--14771621 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
14771563 GGGTTTTTAT
*
14771573 TTAATATTAATATTAACA
1 TTAATATTAATATTAAAA
14771591 TTAATA-TAATATTTAAAA
1 TTAATATTAATA-TTAAAA
*
14771609 TTATTATT-ATATT
1 TTAATATTAATATT
14771622 CTTTGAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 7 0.26
18 19 0.70
19 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATATTAATATTAAAA
Found at i:14771619 original size:21 final size:21
Alignment explanation
Indices: 14771590--14771634 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14771580 TAATATTAAC
14771590 ATTAATATAATATTTAAAATT
1 ATTAATATAATATTTAAAATT
* * * *
14771611 ATTATTATATTCTTTGAAATT
1 ATTAATATAATATTTAAAATT
14771632 ATT
1 ATT
14771635 TATGTATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (21 bp):
ATTAATATAATATTTAAAATT
Found at i:14771731 original size:10 final size:10
Alignment explanation
Indices: 14771649--14771738 Score: 55
Period size: 10 Copynumber: 9.0 Consensus size: 10
14771639 TATTTTTATA
14771649 TTATATATTT
1 TTATATATTT
14771659 TTCAATAATCATTT
1 TT--AT-AT-ATTT
14771673 TT-TAT-TTT
1 TTATATATTT
14771681 TT-TAT-TTT
1 TTATATATTT
*
14771689 TT-TAAATTT
1 TTATATATTT
14771698 ATTATATATTT
1 -TTATATATTT
* * *
14771709 TTAAAAATAT
1 TTATATATTT
*
14771719 TTATGTATTT
1 TTATATATTT
14771729 TTATATATTT
1 TTATATATTT
14771739 CTTAAAAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 14
0.72 0.11 0.16
Matches are distributed among these distances:
8 15 0.24
9 3 0.05
10 28 0.44
11 7 0.11
12 2 0.03
13 2 0.03
14 6 0.10
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (10 bp):
TTATATATTT
Found at i:14771744 original size:50 final size:50
Alignment explanation
Indices: 14771647--14771744 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
14771637 TGTATTTTTA
* * * *
14771647 TATTATATATTTTTCAATAATCATTTTTTATTTTTTTATTTTTTTAAATT
1 TATTATATATTTTTCAAAAATCATTTTGTATTTTTATATTTTCTTAAATT
14771697 TATTATATATTTTT-AAAAAT-ATTTATGTATTTTTATATATTTCTTAAA
1 TATTATATATTTTTCAAAAATCATTT-TGTATTTTTATAT-TTTCTTAAA
14771745 AAATAATTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 4 0.10
49 16 0.38
50 22 0.52
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (50 bp):
TATTATATATTTTTCAAAAATCATTTTGTATTTTTATATTTTCTTAAATT
Found at i:14771747 original size:32 final size:32
Alignment explanation
Indices: 14771694--14771754 Score: 90
Period size: 30 Copynumber: 1.9 Consensus size: 32
14771684 ATTTTTTTAA
14771694 ATTTATTATATATTTTTAAAAAT-ATTTATGT
1 ATTTATTATATATTTTTAAAAATAATTTATGT
14771725 ATTT-TTATATATTTCTTAAAAAATAATTTA
1 ATTTATTATATATTT-TT-AAAAATAATTTA
14771755 GAATTAGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 10 0.37
31 6 0.22
32 6 0.22
33 5 0.19
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (32 bp):
ATTTATTATATATTTTTAAAAATAATTTATGT
Found at i:14773064 original size:26 final size:26
Alignment explanation
Indices: 14773035--14773087 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14773025 TCTGCTGCAC
* *
14773035 TCTCATTTTCA-ACTCTTTTCTTCTCT
1 TCTCAGTTTCACACT-TTCTCTTCTCT
*
14773061 TCTCCGTTTCACACTTTCTCTTCTCT
1 TCTCAGTTTCACACTTTCTCTTCTCT
14773087 T
1 T
14773088 TCCTATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.09, C:0.34, G:0.02, T:0.55
Consensus pattern (26 bp):
TCTCAGTTTCACACTTTCTCTTCTCT
Found at i:14779622 original size:17 final size:18
Alignment explanation
Indices: 14779592--14779625 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14779582 AATGAAAATG
14779592 AAAATAAGTAATATATAT
1 AAAATAAGTAATATATAT
14779610 AAAATAA-TAATATATA
1 AAAATAAGTAATATATA
14779626 AATGAGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (18 bp):
AAAATAAGTAATATATAT
Found at i:14779722 original size:2 final size:2
Alignment explanation
Indices: 14779717--14779745 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14779707 AAAATAGATA
14779717 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14779746 AAATTTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14781997 original size:46 final size:46
Alignment explanation
Indices: 14781947--14782122 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
14781937 TGGTTGAGCA
14781947 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14781993 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
14782038 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14782086 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14782123 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14782103 original size:93 final size:93
Alignment explanation
Indices: 14781944--14782115 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14781934 GGATGGTTGA
* *
14781944 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14782009 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
14782037 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14782102 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
14782116 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:14789551 original size:46 final size:46
Alignment explanation
Indices: 14789501--14789676 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
14789491 TGGTTGAGCA
14789501 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14789547 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
14789592 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14789640 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14789677 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14789657 original size:93 final size:93
Alignment explanation
Indices: 14789498--14789669 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
14789488 GGATGGTTGA
* *
14789498 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14789563 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
14789591 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14789656 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
14789670 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:14791964 original size:136 final size:137
Alignment explanation
Indices: 14791838--14792422 Score: 537
Period size: 136 Copynumber: 4.3 Consensus size: 137
14791828 AATTGGTAAT
* * ** *
14791838 TTCAACCTACTCCATTGCAACTTCAGGGAGATAAGGTTT-GCTAT-GGTCTGCTCTACTACAACT
1 TTCAACCTACTCCACTACAACTTCAGGGAGATAAGGTTTAGCTATCAATCTGCTCTACTGCAACT
14791901 TCAGAGAGATAAGATCTATTTATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
66 TCAGAGAGATAAGAT-TATTTATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
14791966 TTGCTATC
130 TTGCTATC
*** * * * * * *
14791974 TTCAGTTTGCTCCACTACAACTTCAGGGAGATAAGACTTTAACT-TCAACCTGTTCCACTGCAAC
1 TTCAACCTACTCCACTACAACTTCAGGGAGATAAG-GTTTAGCTATCAATCTGCTCTACTGCAAC
** * * * * * * *
14792038 AACAGGGAGATAAG---GTTTA-ATGGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGAT
65 TTCAGAGAGATAAGATTATTTATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
*
14792099 TTGGTAAT-
130 TTGCT-ATC
* * * * * * *
14792107 TTCAACCTACTCCATTGCAACTTCATGGTGATAAGGTTT-GTTAT-GATCTGCTCTATTGCAACT
1 TTCAACCTACTCCACTACAACTTCAGGGAGATAAGGTTTAGCTATCAATCTGCTCTACTGCAACT
* *
14792170 TCAGAGAGATAAGATCTATTTATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAACAAGAT
66 TCAGAGAGATAAGAT-TATTTATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGAT
*
14792235 TTACTATC
130 TTGCTATC
** * *
14792243 TTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGTTTAG-TGGATTCAATTTGCTCTACTGCA
1 TTCAACCTACTCCACTACAACTTCAGGGAGATAAGGTTTAGCT--A-TCAATCTGCTCTACTGCA
* * * *
14792307 ACTTCAGGGAGATAAGATT-TTCCATAATTTGTAGCTTTAATCTGTTACACTGTAACTTCAGGGA
63 ACTTCAGAGAGATAAGATTATT---T-A-TT-TAGCTTCAATCTGTTCCACTGCAACTTCAGGGA
*
14792371 AATAAGATTTGCTATA
122 AATAAGATTTGCTATC
** * * *
14792387 TTCAGTCTGCTCCGCTAGAACTTCAGGGAGATAAGG
1 TTCAACCTACTCCACTACAACTTCAGGGAGATAAGG
14792423 CTGGTGGCTT
Statistics
Matches: 354, Mismatches: 73, Indels: 36
0.76 0.16 0.08
Matches are distributed among these distances:
131 25 0.07
132 4 0.01
133 68 0.19
134 6 0.02
135 6 0.02
136 100 0.28
137 5 0.01
138 28 0.08
139 2 0.01
140 30 0.08
141 1 0.00
142 1 0.00
143 2 0.01
144 76 0.21
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (137 bp):
TTCAACCTACTCCACTACAACTTCAGGGAGATAAGGTTTAGCTATCAATCTGCTCTACTGCAACT
TCAGAGAGATAAGATTATTTATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATT
TGCTATC
Found at i:14791995 original size:45 final size:44
Alignment explanation
Indices: 14791624--14792470 Score: 318
Period size: 45 Copynumber: 18.7 Consensus size: 44
14791614 CTTGTTCTAA
* * * * *
14791624 TCCACTGCAACTTCAAGGAGATGAGACTTGGTAA-TTCCAACCTG-
1 TCCACTACAACTTCAGGGAGATAAGA-TTTGTAACTT-CAATCTGC
* * * * **
14791668 TCCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCTTGC
1 T-CCACTACAACTTCAGGGAGATAAGATTTGT-AACTTCAATC-TGC
* * * ** *
14791715 TCTACTGCAACTTCAGAGAGATAAGGA-TTGTCGCTTCGATCTGC
1 TCCACTACAACTTCAGGGAGATAA-GATTTGTAACTTCAATCTGC
* ** * * * * *
14791759 TCCAATGTAATTTCAGGGAGA-AGACATTTATAGCTTCAATCTAC
1 TCCACTACAACTTCAGGGAGATA-AGATTTGTAACTTCAATCTGC
* * * * * * * *
14791803 TCCGCTAGAACTTCAAGGAGGTAAGAATTGGTAATTTCAACCTAC
1 TCCACTACAACTTCAGGGAGATAAG-ATTTGTAACTTCAATCTGC
* * * **
14791848 TCCATTGCAACTTCAGGGAGATAAGGTTTG---CTAT-GGTCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAACT-TCAATCTGC
* * * *
14791889 TCTACTACAACTTCAGAGAGATAAGATCTATTTATTTAGCTTCAATCTGT
1 TCCACTACAACTTCAGGGAGATAAGAT-T-TGTA---A-CTTCAATCTGC
* * * * *
14791939 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTTTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTG-TAACTTCAATCTGC
* * *
14791984 TCCACTACAACTTCAGGGAGATAAGACTT-TAACTTCAACCTGT
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGC
* ** * * **
14792027 TCCACTGCAACAACAGGGAGATAAGGTTTAATGGCTTCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTT-GTAACTTCAATCTGC
* * *
14792072 TCCACTACAACTTCAGGGAGATAAGATTTGGTAATTTCAACCTAC
1 TCCACTACAACTTCAGGGAGATAAGATTT-GTAACTTCAATCTGC
* * * * * * *
14792117 TCCATTGCAACTTCATGGTGATAAGGTTTGTTA--T-GATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGC
* * * * * *
14792158 TCTATTGCAACTTCAGAGAGATAAGATCTATTTATTTAGCTTCAATCTGT
1 TCCACTACAACTTCAGGGAGATAAGAT-T-TGTA---A-CTTCAATCTGC
* * * * * * *
14792208 TCCACTGCAACTTTAGGGAAACAAGATTTACTATCTTCAGTCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTT-GTAACTTCAATCTGC
* * *
14792253 TCCACTACAACTTCAGGGAGATAAGGTTTAGTGGA-TTCAATTTGC
1 TCCACTACAACTTCAGGGAGATAAGATTT-GT-AACTTCAATCTGC
* * * * *
14792298 TCTACTGCAACTTCAGGGAGATAAGATTTTCCATAATTTGTAGCTTTAATCTGT
1 TCCACTACAACTTCAGGGAGATAAG----------ATTTGTAACTTCAATCTGC
* ** * *
14792352 TACACTGTAACTTCAGGGAAATAAGATTTGCTATA-TTCAGTCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTTG-TA-ACTTCAATCTGC
* * ** * ** * *
14792397 TCCGCTAGAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTTC
1 TCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGC
*
14792441 TTCACTACAACTTCAGGGAGATAAGATTTG
1 TCCACTACAACTTCAGGGAGATAAGATTTG
14792471 CCATCTTTAG
Statistics
Matches: 583, Mismatches: 171, Indels: 98
0.68 0.20 0.12
Matches are distributed among these distances:
41 52 0.09
42 4 0.01
43 38 0.07
44 96 0.16
45 263 0.45
46 30 0.05
47 2 0.00
48 2 0.00
49 8 0.01
50 55 0.09
54 30 0.05
55 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (44 bp):
TCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGC
Found at i:14792201 original size:269 final size:269
Alignment explanation
Indices: 14791791--14792277 Score: 830
Period size: 269 Copynumber: 1.8 Consensus size: 269
14791781 GACATTTATA
* * *
14791791 GCTTCAATCTACTCCGCTAGAACTTCAAGGAGGTAAGAATTGGTAATTTCAACCTACTCCATTGC
1 GCTTCAATCTACTCCACTACAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTACTCCATTGC
*
14791856 AACTTCAGGGAGATAAGGTTTGCTATGGTCTGCTCTACTACAACTTCAGAGAGATAAGATCTATT
66 AACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATT
* * *
14791921 TATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTTTGCTC
131 TATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAACAAGATTTACTATCTTCAGTCTGCTC
14791986 CACTACAACTTCAGGGAGATAAGACTTTAACTTCAACCTGTTCCACTGCAACAACAGGGAGATAA
196 CACTACAACTTCAGGGAGATAAGACTTTAACTTCAACCTGTTCCACTGCAACAACAGGGAGATAA
14792051 GGTTTAATG
261 GGTTTAATG
* * *
14792060 GCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGGTAATTTCAACCTACTCCATTGC
1 GCTTCAATCTACTCCACTACAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTACTCCATTGC
* * * * *
14792125 AACTTCATGGTGATAAGGTTTGTTATGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTATT
66 AACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATT
*
14792190 TATTTAGCTTCAATCTGTTCCACTGCAACTTTAGGGAAACAAGATTTACTATCTTCAGTCTGCTC
131 TATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAACAAGATTTACTATCTTCAGTCTGCTC
14792255 CACTACAACTTCAGGGAGATAAG
196 CACTACAACTTCAGGGAGATAAG
14792278 GTTTAGTGGA
Statistics
Matches: 202, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
269 202 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (269 bp):
GCTTCAATCTACTCCACTACAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTACTCCATTGC
AACTTCAGGGAGATAAGGTTTGCTATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTATT
TATTTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAACAAGATTTACTATCTTCAGTCTGCTC
CACTACAACTTCAGGGAGATAAGACTTTAACTTCAACCTGTTCCACTGCAACAACAGGGAGATAA
GGTTTAATG
Found at i:14792371 original size:144 final size:141
Alignment explanation
Indices: 14791886--14792480 Score: 453
Period size: 144 Copynumber: 4.3 Consensus size: 141
14791876 TGCTATGGTC
* * *
14791886 TGCTCTACTACAACTTCAGAGAGATAAGATCTATT---TATTTAGCTTCAATCTGTTCCACTGCA
1 TGCTCTACTGCAACTTCAGGGAGATAAGAT-T-TTCCATATTTAGCTTCAATCTGTTACACTGCA
* * * * *
14791948 ACTTCAGGGAAATAAGATTTGCTATCTTCAGTTTGCTCCACTACAACTTCAGGGAGATAAGACT-
64 ACTTCAGGGAAACAAGATTTACTATATTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTA
** *
14792012 -TTAACTTCAA-CC
129 GTGGA-TTCAATCT
* * ** * * * * *
14792024 TGTTCCACTGCAACAACAGGGAGATAAG-GTTT--A-A--TGGCTTCAATCTGCTCCACTACAAC
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTTCCATATTTAGCTTCAATCTGTTACACTGCAAC
* * ** ** * * * * * * *
14792083 TTCAGGGAGATAAGATTTGGTA-ATTTCAACCTACTCCATTGCAACTTCATGGTGATAAGGTTTG
66 TTCAGGGAAACAAGATTTACTATA-TTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTAG
* *
14792147 T-TA-T-GATC-
130 TGGATTCAATCT
* * *
14792155 TGCTCTATTGCAACTTCAGAGAGATAAGATCTATT---TATTTAGCTTCAATCTGTTCCACTGCA
1 TGCTCTACTGCAACTTCAGGGAGATAAGAT-T-TTCCATATTTAGCTTCAATCTGTTACACTGCA
* * *
14792217 ACTTTAGGGAAACAAGATTTACTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGTTT
64 ACTTCAGGGAAACAAGATTTACTATATTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGG-CT
14792282 AGTGGATTCAAT-T
128 AGTGGATTCAATCT
* *
14792295 TGCTCTACTGCAACTTCAGGGAGATAAGATTTTCCATAATTTGTAGCTTTAATCTGTTACACTGT
1 TGCTCTACTGCAACTTCAGGGAGATAAGATTTTCCAT-A-TT-TAGCTTCAATCTGTTACACTGC
* * * *
14792360 AACTTCAGGGAAATAAGATTTGCTATATTCAGTCTGCTCCGCTAGAACTTCAGGGAGATAAGGCT
63 AACTTCAGGGAAACAAGATTTACTATATTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGCT
* * *
14792425 GGTGGCTTTAATCT
128 AGTGGATTCAATCT
* * *
14792439 T-CT-TCACTACAACTTCAGGGAGATAAGATTTGCCATCTTTAG
1 TGCTCT-ACTGCAACTTCAGGGAGATAAGATTTTCCATATTTAG
14792481 TCTGTTTGCT
Statistics
Matches: 363, Mismatches: 69, Indels: 48
0.76 0.14 0.10
Matches are distributed among these distances:
131 23 0.06
132 2 0.01
133 71 0.20
134 4 0.01
135 4 0.01
136 69 0.19
137 4 0.01
138 25 0.07
139 2 0.01
140 33 0.09
141 3 0.01
142 2 0.01
143 43 0.12
144 78 0.21
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (141 bp):
TGCTCTACTGCAACTTCAGGGAGATAAGATTTTCCATATTTAGCTTCAATCTGTTACACTGCAAC
TTCAGGGAAACAAGATTTACTATATTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTAGT
GGATTCAATCT
Found at i:14794211 original size:27 final size:26
Alignment explanation
Indices: 14794152--14794231 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
14794142 ATTTGCTTTG
** * *
14794152 TGTATTATAGATTTTAAAATGCTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
** *
14794178 TACATTATTTATTTTAAACTTGTTTTA
1 TGTATTATTCATTTTAAA-TTGTTTTA
14794205 TGTATTATTCATTTTAAATTGTTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
14794231 T
1 T
14794232 TGTTTACTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (26 bp):
TGTATTATTCATTTTAAATTGTTTTA
Found at i:14796003 original size:45 final size:46
Alignment explanation
Indices: 14795925--14796074 Score: 212
Period size: 46 Copynumber: 3.3 Consensus size: 46
14795915 GGTTTTTTCC
* ** * *
14795925 ATCCATCCCACTGTAATTCAAAGGTATAAGATTTATATCATCTTCA
1 ATCCATCCCACTGCAGCTCAAAGGTATAAGATTTGTATCTTCTTCA
* * *
14795971 ATCTATCCCACTGCAGCTC-AGGGTATAGGATTTGTATCTTCTTCA
1 ATCCATCCCACTGCAGCTCAAAGGTATAAGATTTGTATCTTCTTCA
*
14796016 ATCCATCCCACTGCAGCTCAAAGGTATATGATTTGTATCTTCTTCA
1 ATCCATCCCACTGCAGCTCAAAGGTATAAGATTTGTATCTTCTTCA
14796062 ATCCATCCCACTG
1 ATCCATCCCACTG
14796075 TAATTCAGGG
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 40 0.43
46 52 0.57
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (46 bp):
ATCCATCCCACTGCAGCTCAAAGGTATAAGATTTGTATCTTCTTCA
Found at i:14796083 original size:91 final size:92
Alignment explanation
Indices: 14795925--14796110 Score: 232
Period size: 91 Copynumber: 2.0 Consensus size: 92
14795915 GGTTTTTTCC
* * * *
14795925 ATCCATCCCACTGTAATTCAAAGGTATAAGATTTATATCATCTTCAATCTATCCCACTGCAGCTC
1 ATCCATCCCACTGCAACTCAAAGGTATAAGATTTATATCATCTTCAATCCATCCCACTGCAACTC
* *
14795990 AGGG-TATAGG-ATTTGTATCTTCTTCA
66 AGGGATAT-GGAACTTGTAGCTTCTTCA
* * * * * *
14796016 ATCCATCCCACTGCAGCTCAAAGGTATATGATTTGTATCTTCTTCAATCCATCCCACTGTAATTC
1 ATCCATCCCACTGCAACTCAAAGGTATAAGATTTATATCATCTTCAATCCATCCCACTGCAACTC
*
14796081 AGGGATATGGAACTTGTGGCTTCTTCA
66 AGGGATATGGAACTTGTAGCTTCTTCA
14796108 ATC
1 ATC
14796111 ACTTGATCTG
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
91 61 0.76
92 19 0.24
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (92 bp):
ATCCATCCCACTGCAACTCAAAGGTATAAGATTTATATCATCTTCAATCCATCCCACTGCAACTC
AGGGATATGGAACTTGTAGCTTCTTCA
Found at i:14796933 original size:24 final size:24
Alignment explanation
Indices: 14796906--14796959 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
14796896 CTTCTTCTCT
14796906 TTTTTTGATTATTT-TT-TTGATTGA
1 TTTTTT-ATTATTTATTATT-ATTGA
*
14796930 TTTTTTATTATTTATTATTTTTGA
1 TTTTTTATTATTTATTATTATTGA
14796954 TTTTTT
1 TTTTTT
14796960 TAGTCTCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 7 0.26
24 18 0.67
25 2 0.07
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (24 bp):
TTTTTTATTATTTATTATTATTGA
Found at i:14798367 original size:19 final size:19
Alignment explanation
Indices: 14798345--14798381 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14798335 AAAGAGATTC
*
14798345 TAAAGAACCAAAGAATATA
1 TAAAGAACAAAAGAATATA
*
14798364 TAAAGAATAAAAGAATAT
1 TAAAGAACAAAAGAATAT
14798382 TTGCTAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.05, G:0.11, T:0.19
Consensus pattern (19 bp):
TAAAGAACAAAAGAATATA
Found at i:14800361 original size:19 final size:20
Alignment explanation
Indices: 14800337--14800381 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
14800327 TTGTGACATT
* *
14800337 CAATGCATATG-ATGAAATG
1 CAATGCAGATGCATAAAATG
14800356 CAATGCAGATGCATAAAATG
1 CAATGCAGATGCATAAAATG
14800376 -AATGCA
1 CAATGCA
14800382 AAAAAAGACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.22
Consensus pattern (20 bp):
CAATGCAGATGCATAAAATG
Found at i:14802509 original size:15 final size:16
Alignment explanation
Indices: 14802443--14802506 Score: 67
Period size: 17 Copynumber: 3.9 Consensus size: 16
14802433 TGTAAGTTTG
14802443 AAATAAATAATATATGA
1 AAAT-AATAATATATGA
* *
14802460 AAAAAATAA-AAATGA
1 AAATAATAATATATGA
*
14802475 AAATAAGTAATATATATA
1 AAATAA-TAATATAT-GA
14802493 AAATAATAATATAT
1 AAATAATAATATAT
14802507 AAATGAGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 10 0.26
16 8 0.21
17 14 0.36
18 7 0.18
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (16 bp):
AAATAATAATATATGA
Found at i:14804747 original size:2 final size:2
Alignment explanation
Indices: 14804728--14804784 Score: 96
Period size: 2 Copynumber: 28.0 Consensus size: 2
14804718 AAGAATGATG
*
14804728 TA TA TCA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14804771 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
14804785 AAAGCACCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 50 0.96
3 2 0.04
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:14807973 original size:19 final size:19
Alignment explanation
Indices: 14807949--14808038 Score: 127
Period size: 19 Copynumber: 4.9 Consensus size: 19
14807939 ATAATCTTCA
14807949 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14807968 ATGATATGCAATCTTAGACT
1 ATGATATGCAATCTTAGA-T
14807988 A--ATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14808003 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
14808021 TTGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
14808039 AGATATGATT
Statistics
Matches: 64, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
15 2 0.03
16 10 0.16
17 2 0.03
18 18 0.28
19 30 0.47
20 2 0.03
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:14808349 original size:17 final size:17
Alignment explanation
Indices: 14808325--14808359 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14808315 TGTTTCCCTG
*
14808325 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
14808343 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
14808360 GTATTATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:14811470 original size:16 final size:16
Alignment explanation
Indices: 14811449--14811479 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14811439 TTTATTATTT
14811449 TATTAACATAATATAA
1 TATTAACATAATATAA
*
14811465 TATTAATATAATATA
1 TATTAACATAATATA
14811480 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:14814280 original size:29 final size:29
Alignment explanation
Indices: 14814247--14814406 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
14814237 GTGACGAGAT
14814247 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
14814276 TGGCACTAAGTGTGC-TGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
14814304 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
14814333 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
14814362 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
14814391 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14814407 AAATCGAGTA
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
28 30 0.26
29 86 0.74
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:14814316 original size:57 final size:58
Alignment explanation
Indices: 14814243--14814407 Score: 201
Period size: 57 Copynumber: 2.9 Consensus size: 58
14814233 TACGGTGACG
* *
14814243 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGC-TGCTGGAA
1 AGATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
* *
14814299 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
* * * * * **
14814357 GGGTATGGCACTATGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGCGA
1 AGATATGGCACTAAGTGTGCGTGCTGGAAAT-ATATGGCACTAAGTGTGCGA
14814408 AATCGAGTAT
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
56 3 0.03
57 47 0.51
58 43 0.46
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
Found at i:14821787 original size:29 final size:29
Alignment explanation
Indices: 14821754--14821914 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
14821744 GTGACGAGAT
14821754 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
14821783 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
14821812 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
14821841 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
14821870 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
14821899 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14821915 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:14830109 original size:220 final size:220
Alignment explanation
Indices: 14829726--14830315 Score: 984
Period size: 220 Copynumber: 2.7 Consensus size: 220
14829716 CAGGCTAAAG
* * * * *
14829726 CATAGCAGATTTGACCTTCAAGTGTTTACACTGAAGCGGATCCAAGATGATTTAACATCTCTGTA
1 CATAGCAGATTTGGCTTTCAAGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTA
14829791 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* *
14829856 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGAATCCTT
*
14829921 GCGTTGACAAGGAGCAGATCGAAGA
196 GCATTGACAAGGAGCAGATCGAAGA
* *
14829946 CATAGCAGATTTGGCTTTCACGTGTTTATGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTA
1 CATAGCAGATTTGGCTTTCAAGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTA
14830011 TTGTCAGAGAACAAATCGAAGAAACA-ATTTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
66 TTGTCAGAGAACAAATCGAAGAAACAGA-TTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
* *
14830075 GACATAGCAGATCTAACCTTTGGATGTCTTCACATTGAAGTAGATCCAAGATGATTTGGAATCCT
130 GACATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGAATCCT
*
14830140 TGCATTGATAAGGAGCAGATCGAAGA
195 TGCATTGACAAGGAGCAGATCGAAGA
* * **
14830166 CATAGTAGATTTGGCTTTCATGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCAAGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTA
* *
14830231 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
14830296 ACATAGCAGATCTGACCTTC
131 ACATAGCAGATCTAACCTTC
14830316 ATTGAAGCAG
Statistics
Matches: 346, Mismatches: 22, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
219 1 0.00
220 344 0.99
221 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (220 bp):
CATAGCAGATTTGGCTTTCAAGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTA
TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
ACATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGAATCCTT
GCATTGACAAGGAGCAGATCGAAGA
Found at i:14830367 original size:78 final size:78
Alignment explanation
Indices: 14830257--14830494 Score: 343
Period size: 78 Copynumber: 3.1 Consensus size: 78
14830247 CGAAGAAACA
** * * *
14830257 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
14830322 GCAGTTCCAAGAT
66 GCAGATCCAAGAT
* *
14830335 GATTTGGCATCTCTGTATTATACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
14830400 GCAAATCCAAGAT
66 GCAGATCCAAGAT
* *
14830413 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
* *
14830477 AGCAGATCTAAGAC
65 AGCAGATCCAAGAT
14830491 GATT
1 GATT
14830495 AGCAGATTGA
Statistics
Matches: 143, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
77 1 0.01
78 142 0.99
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:14830500 original size:18 final size:17
Alignment explanation
Indices: 14830477--14830521 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
14830467 CCTTCATTGA
14830477 AGCAGATCT-AAGACGATT
1 AGCAGATCTGAAGAC-A-T
14830495 AGCAGAT-TGAAGACAT
1 AGCAGATCTGAAGACAT
14830511 AGCAGATCTGA
1 AGCAGATCTGA
14830522 CCTTCATGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 8 0.32
17 5 0.20
18 12 0.48
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (17 bp):
AGCAGATCTGAAGACAT
Done.