Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 52 of 328
Found at i:14830621 original size:45 final size:45
Alignment explanation
Indices: 14830542--14830741 Score: 285
Period size: 45 Copynumber: 4.5 Consensus size: 45
14830532 TTTACATCGA
* *
14830542 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
14830587 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * * * *
14830632 ACCAGATTGAAGA-AGCAGATTTGACGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
*
14830676 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
14830721 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
14830742 ATCGCCTTCC
Statistics
Matches: 137, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
44 39 0.28
45 98 0.72
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:14830667 original size:89 final size:90
Alignment explanation
Indices: 14830544--14830741 Score: 292
Period size: 89 Copynumber: 2.2 Consensus size: 90
14830534 TACATCGAAG
* * *
14830544 CAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGAT
1 CAGATCAAAGATAG-CAGATTTGACATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGAT
14830608 TTGGCATCTCTGTATTAGACGGGGAC
65 TTGGCATCTCTGTATTAGACGGGGAC
** * *
14830634 CAGATTGAAGA-AGCAGATTTGACGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATT
1 CAGATCAAAGATAGCAGATTTGACATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATT
* *
14830698 TGGCGTCTCTGTATTAGACGGGGAG
66 TGGCATCTCTGTATTAGACGGGGAC
14830723 CAGATCAAAGATAGCAGAT
1 CAGATCAAAGATAGCAGAT
14830742 ATCGCCTTCC
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
89 79 0.82
90 17 0.18
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (90 bp):
CAGATCAAAGATAGCAGATTTGACATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATT
TGGCATCTCTGTATTAGACGGGGAC
Found at i:14831138 original size:18 final size:19
Alignment explanation
Indices: 14831091--14831161 Score: 87
Period size: 18 Copynumber: 3.9 Consensus size: 19
14831081 ATAATCTGCA
*
14831091 ATGATATGCAATCTTAGA-
1 ATGATATACAATCTTAGAT
*
14831109 CTG--ATACAATCTTAGAT
1 ATGATATACAATCTTAGAT
*
14831126 ATGAT-TGCAATCTTAGAT
1 ATGATATACAATCTTAGAT
14831144 ATGATATACAATCTTAGA
1 ATGATATACAATCTTAGA
14831162 AGATATGATT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
16 12 0.27
17 2 0.05
18 19 0.43
19 11 0.25
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (19 bp):
ATGATATACAATCTTAGAT
Found at i:14831160 original size:37 final size:35
Alignment explanation
Indices: 14831091--14831168 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 35
14831081 ATAATCTGCA
*
14831091 ATGATATGCAATCTTAGACTGATACAATCTTAGAT
1 ATGATATGCAATCTTAGAATGATACAATCTTAGAT
14831126 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGA-
1 ATGATATGCAATCTTAGA-ATG--ATACAATCTTAGAT
14831162 A-GATATG
1 ATGATATG
14831169 ATTTTGTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
34 12 0.32
35 10 0.26
36 3 0.08
37 13 0.34
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (35 bp):
ATGATATGCAATCTTAGAATGATACAATCTTAGAT
Found at i:14831474 original size:18 final size:17
Alignment explanation
Indices: 14831451--14831484 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14831441 TTTCCCTAAT
*
14831451 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
14831469 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
14831485 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:14832320 original size:2 final size:2
Alignment explanation
Indices: 14832313--14832338 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14832303 CAAATCATTC
14832313 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14832339 TTAGTCATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14839701 original size:24 final size:24
Alignment explanation
Indices: 14839669--14839719 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
14839659 GGGAAATTGC
14839669 CACCTTAATTGTATTCCATACACA
1 CACCTTAATTGTATTCCATACACA
14839693 CACCTTAATTGTATTCCATACACA
1 CACCTTAATTGTATTCCATACACA
14839717 CAC
1 CAC
14839720 ACATGCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.31
Consensus pattern (24 bp):
CACCTTAATTGTATTCCATACACA
Found at i:14840797 original size:22 final size:22
Alignment explanation
Indices: 14840769--14840813 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
14840759 TTACTTTAAG
*
14840769 GAAGTTAGTTCCTCAAAAAAAA
1 GAAGTTAGTTCCTAAAAAAAAA
14840791 GAAGTTAGTTCCTAAAAAAAAA
1 GAAGTTAGTTCCTAAAAAAAAA
14840813 G
1 G
14840814 TTTTTAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.22
Consensus pattern (22 bp):
GAAGTTAGTTCCTAAAAAAAAA
Found at i:14845875 original size:48 final size:49
Alignment explanation
Indices: 14845702--14845879 Score: 129
Period size: 48 Copynumber: 3.8 Consensus size: 49
14845692 AGGATATGTG
* * * * *
14845702 TGATCCCATGTAAGGCCATGTCTGGGACATGGCATTGGCATCAATATGA
1 TGATCCCATGTAAGACCATATCTAGGACATGGCATTGACATCGATATGA
* * * * * * *
14845751 -GA-CATCGTGTAAGACCATAGCTATG-C-T---ATCGGCTTCGATATGCA
1 TGATC-CCATGTAAGACCATATCTAGGACATGGCATTGACATCGATATG-A
* * * *
14845795 TGATCCCATGTGAGGCCATGTCTGGGACATGGCATTGACATCGATATG-
1 TGATCCCATGTAAGACCATATCTAGGACATGGCATTGACATCGATATGA
*
14845843 TGATCCCATGTAAGACCATATCTAGGATATGGCATTG
1 TGATCCCATGTAAGACCATATCTAGGACATGGCATTG
14845880 GCAGCCTATT
Statistics
Matches: 94, Mismatches: 26, Indels: 19
0.68 0.19 0.14
Matches are distributed among these distances:
43 12 0.13
44 1 0.01
45 15 0.16
46 3 0.03
47 3 0.03
48 48 0.51
50 12 0.13
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (49 bp):
TGATCCCATGTAAGACCATATCTAGGACATGGCATTGACATCGATATGA
Found at i:14847211 original size:31 final size:31
Alignment explanation
Indices: 14847176--14847241 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
14847166 CACACAAGCA
14847176 TGTGTGATCACACAGCCTACCCACACGGGCG
1 TGTGTGATCACACAGCCTACCCACACGGGCG
* * *
14847207 TGTGTGATCACACGGCCTATCCATACGGGCG
1 TGTGTGATCACACAGCCTACCCACACGGGCG
14847238 TGTG
1 TGTG
14847242 ACTCTCCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (31 bp):
TGTGTGATCACACAGCCTACCCACACGGGCG
Found at i:14850884 original size:24 final size:24
Alignment explanation
Indices: 14850852--14850914 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
14850842 CTGAAAAATC
14850852 CATCAATCATGGTATTGATGAGCT
1 CATCAATCATGGTATTGATGAGCT
14850876 CATCAATCATGGTATTGATGAGCT
1 CATCAATCATGGTATTGATGAGCT
*
14850900 CATCAATCATAGTAT
1 CATCAATCATGGTAT
14850915 ATATTATTGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (24 bp):
CATCAATCATGGTATTGATGAGCT
Found at i:14851360 original size:14 final size:14
Alignment explanation
Indices: 14851337--14851366 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14851327 TTGAAAATAT
14851337 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
14851351 GTTGATTTGGATTG
1 GTTGAATTGGATTG
14851365 GT
1 GT
14851367 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:14856001 original size:22 final size:22
Alignment explanation
Indices: 14855976--14856039 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
14855966 TTGTATGGGT
*
14855976 TTAGCACTTCGGTGCTCTTTGC
1 TTAGCACTTCGATGCTCTTTGC
* * *
14855998 TTAGCACTTAGATGCTATTTGT
1 TTAGCACTTCGATGCTCTTTGC
14856020 TTAGCA-TTCGATGCTCTTTG
1 TTAGCACTTCGATGCTCTTTG
14856040 GTGCGGTGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
21 12 0.33
22 24 0.67
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.44
Consensus pattern (22 bp):
TTAGCACTTCGATGCTCTTTGC
Found at i:14856639 original size:9 final size:9
Alignment explanation
Indices: 14856625--14856657 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
14856615 TTATATAAAA
14856625 AGAGTTTAG
1 AGAGTTTAG
14856634 AGAGTTTAG
1 AGAGTTTAG
*
14856643 AAAGTTTAG
1 AGAGTTTAG
14856652 AGAGTT
1 AGAGTT
14856658 CAACTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.33
Consensus pattern (9 bp):
AGAGTTTAG
Found at i:14856727 original size:24 final size:26
Alignment explanation
Indices: 14856680--14856741 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
14856670 TAAATTAATA
14856680 TAATATT--TATTAAGATAAATA-TT
1 TAATATTAATATTAAGATAAATATTT
14856703 TAAT-TTAATATTAAGAT-AATCATTT
1 TAATATTAATATTAAGATAAAT-ATTT
14856728 TAATATTAA-ATTAA
1 TAATATTAATATTAA
14856742 ATTTAATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
22 2 0.06
23 7 0.21
24 10 0.29
25 11 0.32
26 4 0.12
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (26 bp):
TAATATTAATATTAAGATAAATATTT
Found at i:14856754 original size:37 final size:37
Alignment explanation
Indices: 14856704--14856778 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
14856694 ATAAATATTT
*
14856704 AATTTAATATTAAGATAATCATTTTAATATTAAATTA
1 AATTTAATATTAAGATAATCACTTTAATATTAAATTA
14856741 AATTTAATATTAAGATAATCACTTTAATATTAAATTA
1 AATTTAATATTAAGATAATCACTTTAATATTAAATTA
14856778 A
1 A
14856779 TAAAATACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (37 bp):
AATTTAATATTAAGATAATCACTTTAATATTAAATTA
Found at i:14856779 original size:20 final size:19
Alignment explanation
Indices: 14856705--14856773 Score: 90
Period size: 20 Copynumber: 3.6 Consensus size: 19
14856695 TAAATATTTA
14856705 ATTTAATATTAAGATAATC
1 ATTTAATATTAAGATAATC
14856724 ATTTTAATATTAA-ATTAA--
1 A-TTTAATATTAAGA-TAATC
14856742 ATTTAATATTAAGATAATC
1 ATTTAATATTAAGATAATC
14856761 ACTTTAATATTAA
1 A-TTTAATATTAA
14856774 ATTAATAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
17 14 0.32
18 2 0.05
19 3 0.07
20 25 0.57
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTTAATATTAAGATAATC
Found at i:14858676 original size:17 final size:17
Alignment explanation
Indices: 14858654--14858689 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14858644 CCATTATTCT
* *
14858654 AATTATTAAAGATTTAA
1 AATTATAAAAAATTTAA
14858671 AATTATAAAAAATTTAA
1 AATTATAAAAAATTTAA
14858688 AA
1 AA
14858690 AATTAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
AATTATAAAAAATTTAA
Found at i:14859644 original size:15 final size:15
Alignment explanation
Indices: 14859621--14859659 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
14859611 GGCGCCGAAA
14859621 GCCGAGAAGAAGCCC
1 GCCGAGAAGAAGCCC
* *
14859636 GCTGAGAAGAAGCCT
1 GCCGAGAAGAAGCCC
14859651 GCCGAGAAG
1 GCCGAGAAG
14859660 CCAACGGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.33, C:0.26, G:0.36, T:0.05
Consensus pattern (15 bp):
GCCGAGAAGAAGCCC
Found at i:14868086 original size:13 final size:13
Alignment explanation
Indices: 14868054--14868099 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
14868044 TATGAGTGGT
*
14868054 TAAGTCTGTTAGC
1 TAAGTTTGTTAGC
14868067 -AAGTTTGTTAGC
1 TAAGTTTGTTAGC
*
14868079 TCAGTTTGTTAGC
1 TAAGTTTGTTAGC
14868092 TAAGTTTG
1 TAAGTTTG
14868100 CTAAGTCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 11 0.38
13 18 0.62
ACGTcount: A:0.22, C:0.11, G:0.24, T:0.43
Consensus pattern (13 bp):
TAAGTTTGTTAGC
Found at i:14870732 original size:21 final size:21
Alignment explanation
Indices: 14870708--14870755 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
14870698 TATACGAAAG
*
14870708 AATTTAAAATCAATTCAATAC
1 AATTCAAAATCAATTCAATAC
* * *
14870729 AATTCACATTCAATTCAATCC
1 AATTCAAAATCAATTCAATAC
14870750 AATTCA
1 AATTCA
14870756 CATCTTAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (21 bp):
AATTCAAAATCAATTCAATAC
Found at i:14870744 original size:5 final size:5
Alignment explanation
Indices: 14870717--14870755 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
14870707 GAATTTAAAA
* *
14870717 TCAAT TCAAT ACAAT TCACAT TCAAT TCAAT CCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
14870756 CATCTTAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.33
Consensus pattern (5 bp):
TCAAT
Found at i:14870756 original size:21 final size:21
Alignment explanation
Indices: 14870717--14870758 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
14870707 GAATTTAAAA
14870717 TCAATTCAATACAATTCACAT
1 TCAATTCAATACAATTCACAT
*
14870738 TCAATTCAATCCAATTCACAT
1 TCAATTCAATACAATTCACAT
14870759 CTTAGGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.33
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:14873249 original size:18 final size:18
Alignment explanation
Indices: 14873203--14873250 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
14873193 CTTGATTATT
* **
14873203 AAAAATTAAAAATTTAAA
1 AAAAATTTAAAACCTAAA
**
14873221 AAAAAACTAAAACCTAAA
1 AAAAATTTAAAACCTAAA
14873239 AAAAATTTAAAA
1 AAAAATTTAAAA
14873251 GTTTATTTTT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAAATTTAAAACCTAAA
Found at i:14880003 original size:3 final size:3
Alignment explanation
Indices: 14879995--14880048 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
14879985 TCCGAAAACG
14879995 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14880043 AAT AAT
1 AAT AAT
14880049 TACAAAGATG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14885328 original size:18 final size:18
Alignment explanation
Indices: 14885307--14885589 Score: 153
Period size: 18 Copynumber: 15.3 Consensus size: 18
14885297 GAACAATTAT
14885307 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
14885325 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
14885343 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
14885361 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
* *
14885387 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
*
14885405 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAGTCAG
* * *
14885422 ATATTCAGTAACAATTAAG
1 TTATTCAGTAAC-AGTCAG
*
14885441 TTATTCCGTAACAGTCA-
1 TTATTCAGTAACAGTCAG
* *
14885458 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAG
* *
14885477 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* *
14885495 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAG
*
14885513 TTATTCAGTAACAATCTA-
1 TTATTCAGTAACAGTC-AG
* *
14885531 ATATCCAGTAACAGTCAAG
1 TTATTCAGTAACAGTC-AG
* * *
14885550 -TATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
14885567 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAGTCAG
14885585 TTATT
1 TTATT
14885590 TTATACCTTT
Statistics
Matches: 199, Mismatches: 49, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
17 17 0.09
18 148 0.74
19 18 0.09
21 2 0.01
22 1 0.01
23 2 0.01
26 11 0.06
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:14885347 original size:36 final size:36
Alignment explanation
Indices: 14885298--14885589 Score: 207
Period size: 36 Copynumber: 7.9 Consensus size: 36
14885288 TAACAATTAG
* * * *
14885298 AACAATTATTTATTCAGTAACAGTCAGTTATTCGGT
1 AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
* * *
14885334 AACAATCAATTATTCAATAATAACCAGTTATTCAGT
1 AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
* * * *
14885370 ATCGATCAATTGATCGGTTATCCAGTAACAGTCAATTATTCAGT
1 AACAATCAATT-A-----T-T-CAGTAACAATCAGTTATTCAGT
* *
14885414 AA-AATCAGA-TATTCAGTAACAATTAAGTTATTCCGT
1 AACAATCA-ATTATTCAGTAACAA-TCAGTTATTCAGT
* *
14885450 AACAGTC-ATTCATTCAGTGACAATCAGTTATTCAGT
1 AACAATCAATT-ATTCAGTAACAATCAGTTATTCAGT
** * *
14885486 AATGATCAATTATTCAGTAATATTCAGTTATTCAGT
1 AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
* * * *
14885522 AACAATCTAA-TATCCAGTAACAGTCAAG-TATCCGGT
1 AACAATC-AATTATTCAGTAACAATC-AGTTATTCAGT
* *
14885558 AACAGTCAATTATTCAGTAATAATCAGTTATT
1 AACAATCAATTATTCAGTAACAATCAGTTATT
14885590 TTATACCTTT
Statistics
Matches: 196, Mismatches: 42, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
35 13 0.07
36 133 0.68
37 23 0.12
42 2 0.01
43 6 0.03
44 19 0.10
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (36 bp):
AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
Found at i:14885370 original size:54 final size:54
Alignment explanation
Indices: 14885298--14885589 Score: 216
Period size: 54 Copynumber: 5.3 Consensus size: 54
14885288 TAACAATTAG
* * * * *
14885298 AACAATTATTTATTCAGTAACAGTCAGTTATTCGGTAACAATCAATTATTCAAT
1 AACAATCAGTTATTCAGTAACAGTCAGTTATTCAGTAACAGTCAATTATTCAGT
* * * *
14885352 AATAACCAGTTATTCAGTATCGATCAATTGATCGGTTATCCAGTAACAGTCAATTATTCAGT
1 AACAATCAGTTATTCAGTA---A-C-A--G-TCAGTTATTCAGTAACAGTCAATTATTCAGT
* * * *
14885414 AA-AATCAGATATTCAGTAACAATTAAGTTATTCCGTAACAGTC-ATTCATTCAGT
1 AACAATCAGTTATTCAGTAAC-AGTCAGTTATTCAGTAACAGTCAATT-ATTCAGT
* * * * * *
14885468 GACAATCAGTTATTCAGTAA-TGATCAATTATTCAGTAATATTCAGTTATTCAGT
1 AACAATCAGTTATTCAGTAACAG-TCAGTTATTCAGTAACAGTCAATTATTCAGT
* * * *
14885522 AACAATCTA-ATATCCAGTAACAGTCAAG-TATCCGGTAACAGTCAATTATTCAGT
1 AACAATC-AGTTATTCAGTAACAGTC-AGTTATTCAGTAACAGTCAATTATTCAGT
*
14885576 AATAATCAGTTATT
1 AACAATCAGTTATT
14885590 TTATACCTTT
Statistics
Matches: 183, Mismatches: 39, Indels: 32
0.72 0.15 0.13
Matches are distributed among these distances:
53 4 0.02
54 108 0.59
55 21 0.11
57 4 0.02
58 2 0.01
59 1 0.01
61 15 0.08
62 28 0.15
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (54 bp):
AACAATCAGTTATTCAGTAACAGTCAGTTATTCAGTAACAGTCAATTATTCAGT
Found at i:14885761 original size:53 final size:53
Alignment explanation
Indices: 14885700--14885830 Score: 190
Period size: 53 Copynumber: 2.5 Consensus size: 53
14885690 CCGGAACAGT
* *
14885700 AACAGTAACAGTAGCAGTACAGTACACAGAGTACCTCATCGGAACAAATTCGA
1 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
* * * *
14885753 AACAGTAACCGTAACATTACGGTACACAGAGTACTTCATCGGAACAAATCCGA
1 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
*
14885806 AACAGTAATAGTAACAGTAACAGTA
1 AACAGTAACAGTAACAGT-ACAGTA
14885831 ACAATATTCG
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 62 0.93
54 5 0.07
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGGAACAAATCCGA
Found at i:14887466 original size:15 final size:15
Alignment explanation
Indices: 14887446--14887482 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
14887436 CGTTTCATCC
14887446 TTTCTTTCTTTTTCT
1 TTTCTTTCTTTTTCT
14887461 TTTCTTTCTTTTTCT
1 TTTCTTTCTTTTTCT
*
14887476 ATTCTTT
1 TTTCTTT
14887483 TTCTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCTTTCTTTTTCT
Found at i:14887499 original size:26 final size:25
Alignment explanation
Indices: 14887446--14887499 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
14887436 CGTTTCATCC
*
14887446 TTTCTTTCTTTTTCTTTTCTTTCTT
1 TTTCTTTCTTTTTCTTTTCTTTCCT
14887471 TTTCTATTCTTTTTCTTTT-TATTCCT
1 TTTCT-TTCTTTTTCTTTTCT-TTCCT
14887497 TTT
1 TTT
14887500 AATATATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTCTTTCTTTTTCTTTTCTTTCCT
Found at i:14887508 original size:2 final size:2
Alignment explanation
Indices: 14887501--14887530 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14887491 ATTCCTTTTA
14887501 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14887531 ATAACTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14903978 original size:25 final size:24
Alignment explanation
Indices: 14903950--14904007 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
14903940 ATCATGAATT
* *
14903950 ATTAAATTTAGAGTA-GATTAATATA
1 ATTAAATGTAGAATATG-TTAA-ATA
*
14903975 ATTATATGTAGAATATGTTAAATA
1 ATTAAATGTAGAATATGTTAAATA
14903999 ATTAAATGT
1 ATTAAATGT
14904008 TTGATTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 11 0.39
25 16 0.57
26 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (24 bp):
ATTAAATGTAGAATATGTTAAATA
Found at i:14904962 original size:29 final size:27
Alignment explanation
Indices: 14904887--14904962 Score: 71
Period size: 30 Copynumber: 2.6 Consensus size: 27
14904877 AAAAAAATAT
14904887 AATTTTTAAAAAAAATTAAAAATAATTGA
1 AATTTTT-AAAAAAA-TAAAAATAATTGA
* * * *
14904916 AATTATTAAAAAGTATAAAAATTATTTTTA
1 AATTTTTAAAAA-AATAAAAA-TA-ATTGA
14904946 AATTTTTAAAAAAATAA
1 AATTTTTAAAAAAATAA
14904963 TTAAATGCTG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
28 11 0.29
29 13 0.34
30 14 0.37
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (27 bp):
AATTTTTAAAAAAATAAAAATAATTGA
Found at i:14909098 original size:6 final size:7
Alignment explanation
Indices: 14909078--14909103 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14909068 TGGAGTTTGG
14909078 AATAAAA
1 AATAAAA
14909085 AATAAAA
1 AATAAAA
14909092 AATAAAA
1 AATAAAA
14909099 AATAA
1 AATAA
14909104 GAAGTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AATAAAA
Found at i:14914646 original size:20 final size:21
Alignment explanation
Indices: 14914603--14914648 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
14914593 ACTGTTTTGT
14914603 TATGGG-CCAACTATATTGAA
1 TATGGGCCCAACTATATTGAA
*
14914623 -ATGGGCCCAACTATGTT-AA
1 TATGGGCCCAACTATATTGAA
14914642 TATGGGC
1 TATGGGC
14914649 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTATATTGAA
Found at i:14914790 original size:27 final size:28
Alignment explanation
Indices: 14914679--14914791 Score: 72
Period size: 28 Copynumber: 3.9 Consensus size: 28
14914669 TTGTAATAGT
* * *
14914679 GCTACGGCCCAGATTGATACTGACATGG
1 GCTAAGGCCCAGATTAATACTGATATGG
* *
14914707 GCT-AGGCCCAGTATACTCTGATACTG-TAAGGG
1 GCTAAGGCCCAG---A-T-TAATACTGAT-ATGG
* *
14914739 GCTATGGCCCAGATTAATATTGATATGG
1 GCTAAGGCCCAGATTAATACTGATATGG
14914767 GCTAAGGCCCAG-TTAACT-CTGATAT
1 GCTAAGGCCCAGATTAA-TACTGATAT
14914792 CTAAATAGGG
Statistics
Matches: 67, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
27 17 0.25
28 24 0.36
29 2 0.03
30 2 0.03
31 1 0.01
32 14 0.21
33 7 0.10
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (28 bp):
GCTAAGGCCCAGATTAATACTGATATGG
Found at i:14915592 original size:48 final size:48
Alignment explanation
Indices: 14915523--14915744 Score: 186
Period size: 48 Copynumber: 4.7 Consensus size: 48
14915513 TTACAATGTT
* * *
14915523 AATGCCATATCCCAAATATGGTCTTACATGGGACCACATATCAATGCC
1 AATGCCATATCCCAAACATGGTCTTACATGGGATCACATATCGATGCC
* * ** * *
14915571 AATGCCATATCCCAGACATGGTCTTACATAGGATCGTAGATTGATGCC
1 AATGCCATATCCCAAACATGGTCTTACATGGGATCACATATCGATGCC
* *
14915619 AATGACATGTCCCAAACATGGTCTTACATGGGATCACATATCGATG--
1 AATGCCATATCCCAAACATGGTCTTACATGGGATCACATATCGATGCC
* * * * ** * *
14915665 --T-CAATAGCCC-AGCTATGGTCTTACACGAAATTACATATTGATGCC
1 AATGCCATATCCCAAAC-ATGGTCTTACATGGGATCACATATCGATGCC
* * * *
14915710 AAAGCCATGTCCCAGACATGGTCTTACATAGGATC
1 AATGCCATATCCCAAACATGGTCTTACATGGGATC
14915745 GCACATAACC
Statistics
Matches: 129, Mismatches: 38, Indels: 14
0.71 0.21 0.08
Matches are distributed among these distances:
42 2 0.02
43 29 0.22
44 1 0.01
48 96 0.74
49 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (48 bp):
AATGCCATATCCCAAACATGGTCTTACATGGGATCACATATCGATGCC
Found at i:14935424 original size:989 final size:989
Alignment explanation
Indices: 14933508--14935487 Score: 3800
Period size: 989 Copynumber: 2.0 Consensus size: 989
14933498 TCACCTTTTC
* *
14933508 TTTTCCTCGATCTAACTTATTATTTGATCTGTCCGAATCTATATAAATGAATTTAACATCAATTT
1 TTTTCCTCGATCTAACTCATTATTTGATCTGTCCGAATCTATATAAATAAATTTAACATCAATTT
14933573 AATTCACTTTATACTCAATTGAATTCAATTCACATCTTAGGCAAAATTATCATTTTGCCCCTATA
66 AATTCACTTTATACTCAATTGAATTCAATTCACATCTTAGGCAAAATTATCATTTTGCCCCTATA
*
14933638 CTTTTCATAAATGACAATTTCGTCCTTAAACTTGGAAAATAAAATTCATGCAATTTAATCCTTAT
131 CTTTTCATAAATGACAATTTCGTCCCTAAACTTGGAAAATAAAATTCATGCAATTTAATCCTTAT
14933703 TTCAAGCCTAACCAAATTTTACATGTTACAATAACAACACATGAATTTCACAAAAATCAGAATTT
196 TTCAAGCCTAACCAAATTTTACATGTTACAATAACAACACATGAATTTCACAAAAATCAGAATTT
14933768 TTCCATGGGTTTTACCATTTTTTAATTTGGTCCCTAAATCATAATTTCATCAAAATTCTCTTTGT
261 TTCCATGGGTTTTACCATTTTTTAATTTGGTCCCTAAATCATAATTTCATCAAAATTCTCTTTGT
14933833 AAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTATCATAAATTTCAAAATTTCAACATTTAC
326 AAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTATCATAAATTTCAAAATTTCAACATTTAC
14933898 ATCCATGAAAAAATTTCTATACTTTGATATCTTTACAAATTAATCCCCAAAATAGATAGATTAAA
391 ATCCATGAAAAAATTTCTATACTTTGATATCTTTACAAATTAATCCCCAAAATAGATAGATTAAA
14933963 CTATTTTGATCTCGAAAATATAAAAATTATTAAAAAAGGGACAAGATTACTTTCCAAATTAAGCC
456 CTATTTTGATCTCGAAAATATAAAAATTATTAAAAAAGGGACAAGATTACTTTCCAAATTAAGCC
* * *
14934028 AAGAGAGCTTGCTTTCTTTTTCCTAGGGTTTCCATGTATTTTTGGGGAAGAAGATGATAATAATA
521 AAGAGAGCTTGCTTTCTCTTTCCGAGGGTTTCCATGTATTTTTGGGGAAGAAGATGATAATAACA
14934093 ATATGATATTTCTATTTAATTTATTATCATCCATTAATTTTTCAACATTCCAATTTAGTCATTTT
586 ATATGATATTTCTATTTAATTTATTATCATCCATTAATTTTTCAACATTCCAATTTAGTCATTTT
14934158 CTTTTTCTATTTTTTCATGGATGATTCATCAAAAATATCTACTAACTTTTCTTAATGGTATAATT
651 CTTTTTCTATTTTTTCATGGATGATTCATCAAAAATATCTACTAACTTTTCTTAATGGTATAATT
14934223 GCCATATAAGGACCTCAATTTTTGAATTCCATAACTAATTAATGCTTATAGCTACTAGAAATCAA
716 GCCATATAAGGACCTCAATTTTTGAATTCCATAACTAATTAATGCTTATAGCTACTAGAAATCAA
*
14934288 CTTTTATATTCTATGCAATTTGGTCCTTTCATCAAATTAGACATATAACCTGTAAAATTTCTTAA
781 CTTTTACATTCTATGCAATTTGGTCCTTTCATCAAATTAGACATATAACCTGTAAAATTTCTTAA
14934353 CGAAATTTTCACACGATATTTCTGTAATTCTGTAGATCATAAAATAATATTAAAATAAATTTCTC
846 CGAAATTTTCACACGATATTTCTGTAATTCTGTAGATCATAAAATAATATTAAAATAAATTTCTC
14934418 TTCCTGGATCAGATTTGTGGTCCCGAAACCACTGTTCCGATTACACTGAAAATGGGCTATTACAA
911 TTCCTGGATCAGATTTGTGGTCCCGAAACCACTGTTCCGATTACACTGAAAATGGGCTATTACAA
14934483 AACCTTAGCTATCA
976 AACCTTAGCTATCA
*
14934497 TTTTCCTCGATCTAACTCATTATTTGATCTGTCCGGATCTATATAAATAAATTTAACATCAATTT
1 TTTTCCTCGATCTAACTCATTATTTGATCTGTCCGAATCTATATAAATAAATTTAACATCAATTT
14934562 AATTCACTTTATACTCAATTGAATTCAATTCACATCTTAGGCAAAATTATCATTTTGCCCCTATA
66 AATTCACTTTATACTCAATTGAATTCAATTCACATCTTAGGCAAAATTATCATTTTGCCCCTATA
*
14934627 CTTTTCATAAATGACAATTTCGTCCCTAAACTTGGAAAATGAAATTCATGCAATTTAATCCTTAT
131 CTTTTCATAAATGACAATTTCGTCCCTAAACTTGGAAAATAAAATTCATGCAATTTAATCCTTAT
*
14934692 TTCAAGCCTAACCAAATTTTATATGTTACAATAACAACACATGAATTTCACAAAAATCAGAATTT
196 TTCAAGCCTAACCAAATTTTACATGTTACAATAACAACACATGAATTTCACAAAAATCAGAATTT
14934757 TTCCATGGGTTTTACCATTTTTTAATTTGGTCCCTAAATCATAATTTCATCAAAATTCTCTTTGT
261 TTCCATGGGTTTTACCATTTTTTAATTTGGTCCCTAAATCATAATTTCATCAAAATTCTCTTTGT
14934822 AAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTATCATAAATTTCAAAATTTCAACATTTAC
326 AAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTATCATAAATTTCAAAATTTCAACATTTAC
14934887 ATCCATGAAAAAATTTCTATACTTTGATATCTTTACAAATTAATCCCCAAAATAGATAGATTAAA
391 ATCCATGAAAAAATTTCTATACTTTGATATCTTTACAAATTAATCCCCAAAATAGATAGATTAAA
14934952 CTATTTTGATCTCGAAAATATAAAAATTATTAAAAAAGGGACAAGATTACTTTCCAAATTAAGCC
456 CTATTTTGATCTCGAAAATATAAAAATTATTAAAAAAGGGACAAGATTACTTTCCAAATTAAGCC
* *
14935017 AAGAGATCTTGTTTTCTCTTTCCGAGGGTTTCCATGTA-TTTTGGAGGAAGAAGATGATAATAAC
521 AAGAGAGCTTGCTTTCTCTTTCCGAGGGTTTCCATGTATTTTTGG-GGAAGAAGATGATAATAAC
14935081 AATATGATATTTCTATTTAATTTATTATCATCCATTAATTTTTCAACATTCCAATTTAGTCATTT
585 AATATGATATTTCTATTTAATTTATTATCATCCATTAATTTTTCAACATTCCAATTTAGTCATTT
14935146 TCTTTTTCTATTTTTTCATGGATGATTCATCAAAAATATCTACTAACTTTTCTTAATGGTATAAT
650 TCTTTTTCTATTTTTTCATGGATGATTCATCAAAAATATCTACTAACTTTTCTTAATGGTATAAT
* *
14935211 TGTCATATAAGGACCTCAATTTTTGAATTCCATAGCTAATTAATGCTTATAGCTACTAGAAATCA
715 TGCCATATAAGGACCTCAATTTTTGAATTCCATAACTAATTAATGCTTATAGCTACTAGAAATCA
*
14935276 ACTTTTACATTCTATGCAATTTGGTCCTTTCATCAAATTAGACATATAACCTGTAAAATTTTTTA
780 ACTTTTACATTCTATGCAATTTGGTCCTTTCATCAAATTAGACATATAACCTGTAAAATTTCTTA
14935341 ACGAAATTTTCACACGATATTTCTGTAATTCTGTAGATCATAAAATAATATTAAAATAAATTTCT
845 ACGAAATTTTCACACGATATTTCTGTAATTCTGTAGATCATAAAATAATATTAAAATAAATTTCT
*
14935406 CTTCCTGGATCAGATTTGTGGTCCCGAAACCACTGTTCCGATTACACTGAAAATGGGCTGTTACA
910 CTTCCTGGATCAGATTTGTGGTCCCGAAACCACTGTTCCGATTACACTGAAAATGGGCTATTACA
14935471 AAACCTTAGCTATCA
975 AAACCTTAGCTATCA
14935486 TT
1 TT
14935488 GTTCTTGGCC
Statistics
Matches: 974, Mismatches: 16, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
988 6 0.01
989 968 0.99
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (989 bp):
TTTTCCTCGATCTAACTCATTATTTGATCTGTCCGAATCTATATAAATAAATTTAACATCAATTT
AATTCACTTTATACTCAATTGAATTCAATTCACATCTTAGGCAAAATTATCATTTTGCCCCTATA
CTTTTCATAAATGACAATTTCGTCCCTAAACTTGGAAAATAAAATTCATGCAATTTAATCCTTAT
TTCAAGCCTAACCAAATTTTACATGTTACAATAACAACACATGAATTTCACAAAAATCAGAATTT
TTCCATGGGTTTTACCATTTTTTAATTTGGTCCCTAAATCATAATTTCATCAAAATTCTCTTTGT
AAAAGTTGTTTATCTATCAACAACCTTTCATTTTCTATCATAAATTTCAAAATTTCAACATTTAC
ATCCATGAAAAAATTTCTATACTTTGATATCTTTACAAATTAATCCCCAAAATAGATAGATTAAA
CTATTTTGATCTCGAAAATATAAAAATTATTAAAAAAGGGACAAGATTACTTTCCAAATTAAGCC
AAGAGAGCTTGCTTTCTCTTTCCGAGGGTTTCCATGTATTTTTGGGGAAGAAGATGATAATAACA
ATATGATATTTCTATTTAATTTATTATCATCCATTAATTTTTCAACATTCCAATTTAGTCATTTT
CTTTTTCTATTTTTTCATGGATGATTCATCAAAAATATCTACTAACTTTTCTTAATGGTATAATT
GCCATATAAGGACCTCAATTTTTGAATTCCATAACTAATTAATGCTTATAGCTACTAGAAATCAA
CTTTTACATTCTATGCAATTTGGTCCTTTCATCAAATTAGACATATAACCTGTAAAATTTCTTAA
CGAAATTTTCACACGATATTTCTGTAATTCTGTAGATCATAAAATAATATTAAAATAAATTTCTC
TTCCTGGATCAGATTTGTGGTCCCGAAACCACTGTTCCGATTACACTGAAAATGGGCTATTACAA
AACCTTAGCTATCA
Found at i:14937755 original size:23 final size:23
Alignment explanation
Indices: 14937729--14937781 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
14937719 TATGGAAGGA
14937729 TTCTTTCATTATGGTATTAATTT
1 TTCTTTCATTATGGTATTAATTT
*
14937752 TTCTTTCATTCTGGTATTAATTT
1 TTCTTTCATTATGGTATTAATTT
14937775 TTCTTTC
1 TTCTTTC
14937782 TTCCATCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.13, G:0.08, T:0.62
Consensus pattern (23 bp):
TTCTTTCATTATGGTATTAATTT
Found at i:14941073 original size:18 final size:20
Alignment explanation
Indices: 14941037--14941078 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
14941027 TATTGCTTCT
*
14941037 AAAAAGCACTTTTGGGAAA-A
1 AAAAAACACTTTT-GGAAACA
14941057 AAAAAACACTTTT-GAAACA
1 AAAAAACACTTTTGGAAACA
14941076 AAA
1 AAA
14941079 GCATTCCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 4 0.20
19 4 0.20
20 12 0.60
ACGTcount: A:0.57, C:0.12, G:0.12, T:0.19
Consensus pattern (20 bp):
AAAAAACACTTTTGGAAACA
Found at i:14944175 original size:12 final size:12
Alignment explanation
Indices: 14944158--14944182 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14944148 CGTCATAACA
14944158 TATTAGTGTTGC
1 TATTAGTGTTGC
14944170 TATTAGTGTTGC
1 TATTAGTGTTGC
14944182 T
1 T
14944183 TCAGACAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (12 bp):
TATTAGTGTTGC
Found at i:14944532 original size:17 final size:17
Alignment explanation
Indices: 14944510--14944543 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14944500 ATTTTTATTA
14944510 AATTTTTAATTAAATTT
1 AATTTTTAATTAAATTT
14944527 AATTTTTAATTAAATTT
1 AATTTTTAATTAAATTT
14944544 TACCACTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTTTTAATTAAATTT
Found at i:14944544 original size:28 final size:27
Alignment explanation
Indices: 14944480--14944563 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 27
14944470 AATTTATGTG
* *
14944480 ATTAAATTTT-ACTAACTTTGATTTTT
1 ATTAAATTTTAACTAAATTTAATTTTT
*
14944506 ATTAAATTTTTAATTAAATTTAATTTTT
1 ATTAAA-TTTTAACTAAATTTAATTTTT
*
14944534 AATTAAATTTTACCACTCAATATTAATTTT
1 -ATTAAATTTTA--ACTAAAT-TTAATTTT
14944564 AATGCTTTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
26 6 0.13
27 4 0.09
28 18 0.38
29 6 0.13
30 5 0.11
31 8 0.17
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.55
Consensus pattern (27 bp):
ATTAAATTTTAACTAAATTTAATTTTT
Found at i:14946563 original size:19 final size:18
Alignment explanation
Indices: 14946539--14946586 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
14946529 AAAATTTTAT
14946539 TTTATATATTTTAAAATA
1 TTTATATATTTTAAAATA
14946557 TTATATATATTTTAAAATA
1 TT-TATATATTTTAAAATA
*
14946576 TTTATGTATTT
1 TTTATATATTT
14946587 ATGTATCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 10 0.36
19 18 0.64
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
TTTATATATTTTAAAATA
Found at i:14946975 original size:35 final size:34
Alignment explanation
Indices: 14946925--14946990 Score: 114
Period size: 35 Copynumber: 1.9 Consensus size: 34
14946915 CATGTCTGTG
14946925 TTTCAAGTTATTACCCAATAAAAAGCTCCTAGTA
1 TTTCAAGTTATTACCCAATAAAAAGCTCCTAGTA
*
14946959 TTTCTAAGTTGTTACCCAATAAAAAGCTCCTA
1 TTTC-AAGTTATTACCCAATAAAAAGCTCCTA
14946991 CTTGAACTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (34 bp):
TTTCAAGTTATTACCCAATAAAAAGCTCCTAGTA
Found at i:14948587 original size:27 final size:27
Alignment explanation
Indices: 14948547--14948602 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
14948537 ATATATTTTA
14948547 TTTTTATTAATAAA-TAAATAAATA-AT
1 TTTTTATTAATAAATTAAA-AAATAGAT
*
14948573 TTTTTATATATTAAATTAAAAAATAGAT
1 TTTTTAT-TAATAAATTAAAAAATAGAT
14948601 TT
1 TT
14948603 ATCTTTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 7 0.27
27 11 0.42
28 8 0.31
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
TTTTTATTAATAAATTAAAAAATAGAT
Found at i:14950806 original size:55 final size:55
Alignment explanation
Indices: 14950722--14950835 Score: 210
Period size: 55 Copynumber: 2.1 Consensus size: 55
14950712 AAGGGTCTTT
*
14950722 CCTTAAATTCATTGTTGGAAAGAATGGAACACCTCTGCAATATTTACCACAGTGC
1 CCTTAAATTCATTGTTGGAAAGAATGGAACACCTCTCCAATATTTACCACAGTGC
*
14950777 CCTTAAATTCATTGTTGGAAGGAATGGAACACCTCTCCAATATTTACCACAGTGC
1 CCTTAAATTCATTGTTGGAAAGAATGGAACACCTCTCCAATATTTACCACAGTGC
14950832 CCTT
1 CCTT
14950836 CAAGTTCCTC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (55 bp):
CCTTAAATTCATTGTTGGAAAGAATGGAACACCTCTCCAATATTTACCACAGTGC
Found at i:14954550 original size:3 final size:3
Alignment explanation
Indices: 14954542--14954640 Score: 58
Period size: 3 Copynumber: 32.3 Consensus size: 3
14954532 ATTAGTTAAT
* * *
14954542 TTA TTA TTA TTC TTA TTAA TGTA -TA TTA TTA TTC TTA TTAA TGTA TTC
1 TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TT-A T-TA TTA
* * * * * * *
14954590 TTA TTA TT- GTA TTA TTG CTA TTA TTT TTA TTA TTA TCA CTA TTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14954637 TTA T
1 TTA T
14954641 ATTTCCTTTC
Statistics
Matches: 70, Mismatches: 20, Indels: 12
0.69 0.20 0.12
Matches are distributed among these distances:
2 3 0.04
3 58 0.83
4 7 0.10
5 2 0.03
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:14954571 original size:22 final size:23
Alignment explanation
Indices: 14954542--14954625 Score: 100
Period size: 22 Copynumber: 3.7 Consensus size: 23
14954532 ATTAGTTAAT
14954542 TTATTATTATTCTTATTAATGTA
1 TTATTATTATTCTTATTAATGTA
14954565 -TATTATTATTCTTATTAATGTA
1 TTATTATTATTCTTATTAATGTA
* * *
14954587 TTCTTATTATT-GTATTATTGCTA
1 TTATTATTATTCTTATTAATG-TA
* *
14954610 TTATTTTTATTATTAT
1 TTATTATTATTCTTAT
14954626 CACTATTATA
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
22 29 0.56
23 20 0.38
24 3 0.06
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (23 bp):
TTATTATTATTCTTATTAATGTA
Found at i:14954590 original size:14 final size:14
Alignment explanation
Indices: 14954549--14954602 Score: 57
Period size: 14 Copynumber: 4.3 Consensus size: 14
14954539 AATTTATTAT
14954549 TATTCTTATTAATG
1 TATTCTTATTAATG
14954563 TA----TATT-AT-
1 TATTCTTATTAATG
14954571 TATTCTTATTAATG
1 TATTCTTATTAATG
*
14954585 TATTCTTATTATTG
1 TATTCTTATTAATG
14954599 TATT
1 TATT
14954603 ATTGCTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
8 2 0.06
9 2 0.06
10 4 0.12
12 4 0.12
13 2 0.06
14 19 0.58
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (14 bp):
TATTCTTATTAATG
Found at i:14955740 original size:26 final size:26
Alignment explanation
Indices: 14955703--14955786 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
14955693 TGATACAAAT
* *
14955703 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14955729 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
14955755 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
14955781 TGATAA
1 TGATAA
14955787 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:14959641 original size:34 final size:34
Alignment explanation
Indices: 14959598--14959668 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
14959588 CGCAATTAGA
14959598 GAAAGGTGATAGTTTGGCAAATGGATACATATTG
1 GAAAGGTGATAGTTTGGCAAATGGATACATATTG
*
14959632 GAAAGGTGATAGTTTGGCAGATGGATACATATTG
1 GAAAGGTGATAGTTTGGCAAATGGATACATATTG
14959666 GAA
1 GAA
14959669 TTATGATACT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.35, C:0.06, G:0.31, T:0.28
Consensus pattern (34 bp):
GAAAGGTGATAGTTTGGCAAATGGATACATATTG
Found at i:14967009 original size:26 final size:26
Alignment explanation
Indices: 14966973--14967023 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14966963 CGTATCCATA
14966973 AGGACTAAAAGTACTAGTAATTACTG
1 AGGACTAAAAGTACTAGTAATTACTG
14966999 AGGACTAAAAGTACTAGTAATTACT
1 AGGACTAAAAGTACTAGTAATTACT
14967024 ATCTTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (26 bp):
AGGACTAAAAGTACTAGTAATTACTG
Found at i:14969437 original size:2 final size:2
Alignment explanation
Indices: 14969430--14969455 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14969420 ATATCATGAC
14969430 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14969456 GACTAGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14969486 original size:17 final size:17
Alignment explanation
Indices: 14969452--14969506 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 17
14969442 ATATATATAT
*
14969452 ATATGA-CTAG-TTTCA
1 ATATGATCTAGCTTTAA
14969467 ATATGATCTAGCTTTAA
1 ATATGATCTAGCTTTAA
14969484 ATATGATCTAGCTTTAA
1 ATATGATCTAGCTTTAA
14969501 ATATGA
1 ATATGA
14969507 ATGCTTGATG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
15 6 0.16
16 4 0.11
17 27 0.73
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (17 bp):
ATATGATCTAGCTTTAA
Found at i:14970568 original size:20 final size:20
Alignment explanation
Indices: 14970528--14970568 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14970518 CACTGAATTA
* *
14970528 GGCCCATTTCATCTGTTTTT
1 GGCCCATTTCATCTCTCTTT
*
14970548 GGCCCATTTCGTCTCTCTTT
1 GGCCCATTTCATCTCTCTTT
14970568 G
1 G
14970569 CTTTCCTATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.07, C:0.29, G:0.17, T:0.46
Consensus pattern (20 bp):
GGCCCATTTCATCTCTCTTT
Found at i:14971801 original size:7 final size:7
Alignment explanation
Indices: 14971789--14971815 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14971779 TTTATTTTAT
14971789 TTTATTA
1 TTTATTA
14971796 TTTATTA
1 TTTATTA
14971803 TTTATTA
1 TTTATTA
14971810 TTTATT
1 TTTATT
14971816 TTATTAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTA
Found at i:14977186 original size:10 final size:10
Alignment explanation
Indices: 14977171--14977200 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
14977161 AACCTACCCT
14977171 ACCCAATACA
1 ACCCAATACA
14977181 ACCCAAATACA
1 ACCC-AATACA
14977192 ACCCAATAC
1 ACCCAATAC
14977201 CCGATTGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.50, C:0.40, G:0.00, T:0.10
Consensus pattern (10 bp):
ACCCAATACA
Found at i:14978409 original size:3 final size:3
Alignment explanation
Indices: 14978401--14978770 Score: 153
Period size: 3 Copynumber: 127.0 Consensus size: 3
14978391 TTTGCTAAAT
14978401 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
14978448 GTA -TA TT- TTT TTA TTA TATA TGTA -TA TGTA TATA TTT TTA -TA CATA
1 TTA TTA TTA TTA TTA TTA T-TA T-TA TTA T-TA T-TA TTA TTA TTA -TTA
* * * * *
14978494 GTA TTA TT- TT- TTA TTA CT- TTA TT- TTA ATA TT- TTT TTA -TA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * * * *
14978536 -CA TT- TGC TT- TTC GTA TT- TCA ATA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
14978580 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA GTG TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
14978629 TTT TTA TTA TATA TGT- GTA TGTA -TA TGTA -TA TGT- TTA -TA TATA
1 TTA TTA TTA T-TA T-TA TTA T-TA TTA T-TA TTA T-TA TTA TTA T-TA
* * * ** *
14978672 GTA TTA TTCT TTA TTA CT- TTA TT- TT- TTA -TA TT- TGC TTT TTGGA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A
* * *
14978715 TT- TCA ATA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
14978762 TTA ATA TTA
1 TTA TTA TTA
14978771 GTGTATATTT
Statistics
Matches: 280, Mismatches: 51, Indels: 72
0.69 0.13 0.18
Matches are distributed among these distances:
2 43 0.15
3 207 0.74
4 28 0.10
5 2 0.01
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:14978928 original size:3 final size:3
Alignment explanation
Indices: 14978914--14979134 Score: 51
Period size: 3 Copynumber: 72.3 Consensus size: 3
14978904 TTAATTTAAC
* * * * * *
14978914 TTA TTAA TTA TTA TTA TCA TTA TCA CTA TTG TTA TTA CT- TTA CTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
14978959 TCGTA ATA TAA TATA TTA TTA ATA TTA CTT- TTA TT- TTCA TTA TTA
1 T--TA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TT-A TTA TTA
* * * * ** *
14979004 TTA TTA TTA CTA TTA TTCT TTA TTG TCA TGG TTA TTA -TA TTTA TTT
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* * * * * * * * *
14979050 TTA -TA GCTA TTA TTT TTT TTA TCA CTA ATA TTA CTA CTG TTA -TA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
14979094 TTTA TTA TTA TTA CTT- TTA TTA TAA TTA CTA TTA TTA TTA T
1 -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14979135 AGTTTTTCTT
Statistics
Matches: 153, Mismatches: 47, Indels: 36
0.65 0.20 0.15
Matches are distributed among these distances:
2 13 0.08
3 119 0.78
4 19 0.12
5 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:14979114 original size:15 final size:15
Alignment explanation
Indices: 14979094--14979134 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
14979084 TACTGTTATA
14979094 TTTATTATTATTACT
1 TTTATTATTATTACT
*
14979109 TTTATTATAATTACT
1 TTTATTATTATTACT
*
14979124 ATTATTATTAT
1 TTTATTATTAT
14979135 AGTTTTTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTATTATTATTACT
Found at i:14991253 original size:3 final size:3
Alignment explanation
Indices: 14991245--14991826 Score: 278
Period size: 3 Copynumber: 196.0 Consensus size: 3
14991235 TTTGCTAAAT
14991245 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * *
14991293 GTA TT- TT- TTA TTA TATA TGTA -TA TGTA TATA TTT TTA -TA CATA
1 TTA TTA TTA TTA TTA T-TA T-TA TTA T-TA T-TA TTA TTA TTA -TTA
* * * * * * *
14991336 GTA TTA TT- TTT TTA TTA CT- TTA TT- TTA ATG TTT TTA TTA -TA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * * * * * *
14991380 -CA TT- TGC TT- TTC GTA TT- TCA ATA TTA TTG CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14991424 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA GTGTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -T-TA TTA
* * *
14991470 TTT TTA TTTA TATA TGTA -TA TGTA TT- TATA TT- TATA CATA GTA TT-
1 TTA TTA -TTA T-TA T-TA TTA T-TA TTA T-TA TTA T-TA -TTA TTA TTA
* * * * * * *
14991515 TTT TTAA TTA CT- TTA TTT TTA TTA -TA CTA -CA TT- TGTT TTT TGTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA T-TA
14991559 TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
14991606 TTA TTA ATA TTA GTG TGTA TTT TTA TTA TATA TGT- GTA TGTA -TA TGTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA T-TA T-TA TTA T-TA TTA T-TA
* * *
14991654 TATA TT- TATA TATA GTA TTA TT- TT- TTA TTA CT- TTA TTT TTA TTA
1 T-TA TTA T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * *
14991698 -TA TT- TGC TTT TTGAA TT- TCA ATA TTA TT- CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT--A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14991741 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
14991788 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14991827 GTGTATATTT
Statistics
Matches: 450, Mismatches: 75, Indels: 108
0.71 0.12 0.17
Matches are distributed among these distances:
2 53 0.12
3 340 0.76
4 53 0.12
5 4 0.01
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:14992127 original size:18 final size:19
Alignment explanation
Indices: 14992093--14992137 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
14992083 TTGTCATGGT
14992093 TATTATGTTTATTTTATAAC
1 TATTAT-TTTATTTTATAAC
*
14992113 TATTATTTT-TTTTATCAC
1 TATTATTTTATTTTATAAC
*
14992131 TAATATT
1 TATTATT
14992138 ACTACAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 14 0.61
19 3 0.13
20 6 0.26
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTATTTTATTTTATAAC
Found at i:14992170 original size:15 final size:15
Alignment explanation
Indices: 14992150--14992190 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
14992140 TACAGTTATA
*
14992150 TTTATTATTATTTCT
1 TTTATTATTATTACT
*
14992165 TTTATTATAATTACT
1 TTTATTATTATTACT
*
14992180 ATTATTATTAT
1 TTTATTATTAT
14992191 AGCTTTTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTATTATTATTACT
Found at i:14994563 original size:9 final size:9
Alignment explanation
Indices: 14994549--14994578 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14994539 CCAACTCCTA
14994549 TTTTTTTTC
1 TTTTTTTTC
14994558 TTTTTTTTC
1 TTTTTTTTC
*
14994567 TTCTTTTTC
1 TTTTTTTTC
14994576 TTT
1 TTT
14994579 GAAACACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:15007940 original size:44 final size:44
Alignment explanation
Indices: 15007883--15007966 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 44
15007873 AAATTACAGT
*
15007883 GGAGCAGACTGAAGATACCAATATTATC-TCTCTAAAGTTGTAGC
1 GGAGCAGACTGAAGATACCAATACTATCTTC-CTAAAGTTGTAGC
* * * * *
15007927 GGAGTAGAGTGAAGCTACTAATCCTATCTTCCTAAAGTTG
1 GGAGCAGACTGAAGATACCAATACTATCTTCCTAAAGTTG
15007967 CAATGGATCG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
44 31 0.94
45 2 0.06
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
GGAGCAGACTGAAGATACCAATACTATCTTCCTAAAGTTGTAGC
Found at i:15008198 original size:85 final size:85
Alignment explanation
Indices: 15008043--15008198 Score: 199
Period size: 85 Copynumber: 1.8 Consensus size: 85
15008033 ATGACAATTA
* * * * *
15008043 TTATCTCCCTGAAGTTGCAGTGGGTCAGATTGAAGCCACAAGTTTTATCTATCTGAAGTTGTAGT
1 TTATCTCCCTGAAGTAGCAGTGGGTCAGATTGAAGCCACAAGTCTTATCTACCTGAAGTTGCAGC
15008108 AGAGCAGATCATAACAAACT
66 AGAGCAGATCATAACAAACT
** *
15008128 TTATCTCCCTGAAGTAGCAGTGGAG-CATG-TTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
1 TTATCTCCCTGAAGTAGCAGTGG-GTCA-GATTGAAGCCACAAGTCTTATCTACCTGAAGTTGCA
*
15008191 GCGGAGCA
64 GCAGAGCA
15008199 AACTAAAGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 58 0.97
86 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (85 bp):
TTATCTCCCTGAAGTAGCAGTGGGTCAGATTGAAGCCACAAGTCTTATCTACCTGAAGTTGCAGC
AGAGCAGATCATAACAAACT
Found at i:15008251 original size:45 final size:44
Alignment explanation
Indices: 15008130--15008251 Score: 129
Period size: 45 Copynumber: 2.8 Consensus size: 44
15008120 AACAAACTTT
* * * * *
15008130 ATCTCCCTGAAGTAGCAGTGGAGCATGTTGAAGTTACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGATACAAGTCTC
* * *
15008174 ATCTCCCTGAAGTTGCAGCGGAGCAAACTAAAGATAGCGAA-TCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGATA-C-AAGTCTC
* *
15008219 ATTTCCTTGAAGTTGCAGTGGAGCATATTAAAG
1 ATCTCCCTGAAGTTGCAGTGGAGCATATTAAAG
15008252 CTACTTAAAG
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
44 29 0.46
45 32 0.51
46 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGATACAAGTCTC
Found at i:15009631 original size:3 final size:3
Alignment explanation
Indices: 15009623--15009795 Score: 70
Period size: 3 Copynumber: 56.3 Consensus size: 3
15009613 ATTAGTTAAT
* *
15009623 TTA TTA TTA TTAA TGTA -TA TTA TTA TTA TTC TTA TTAA TGTA TTC TTA
1 TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA
* * * * * * *
15009671 TTA TT- GTA TTA TTG CTA TTA TTT TTA TTA TTA TCA CTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** **
15009718 -TA TT- TCC TT- TCTA TGC TTA TTTA TTTA TTTA TTTA TTA TTA -TA
1 TTA TTA TTA TTA T-TA TTA TTA -TTA -TTA -TTA -TTA TTA TTA TTA
* * *
15009761 TTT TGTA TTA TTA TTA CTA TTA TTA CTA TTA TTA T
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
15009796 ATCTCTATTT
Statistics
Matches: 127, Mismatches: 30, Indels: 26
0.69 0.16 0.14
Matches are distributed among these distances:
2 9 0.07
3 91 0.72
4 25 0.20
5 2 0.02
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:15009657 original size:25 final size:26
Alignment explanation
Indices: 15009623--15009703 Score: 82
Period size: 25 Copynumber: 3.3 Consensus size: 26
15009613 ATTAGTTAAT
15009623 TTATTATTATTAATGTA-TATTATTA
1 TTATTATTATTAATGTATTATTATTA
* *
15009648 TTATTCTTATTAATGTATTCTTATTA
1 TTATTATTATTAATGTATTATTATTA
* *
15009674 TT-GTATTA-T--TGCTATTATTTTTA
1 TTATTATTATTAATG-TATTATTATTA
15009697 TTATTAT
1 TTATTAT
15009704 CACTATTATA
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
22 2 0.04
23 11 0.24
24 4 0.09
25 20 0.43
26 9 0.20
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (26 bp):
TTATTATTATTAATGTATTATTATTA
Found at i:15009668 original size:14 final size:14
Alignment explanation
Indices: 15009613--15009683 Score: 76
Period size: 14 Copynumber: 5.2 Consensus size: 14
15009603 TATTAGTAAA
*
15009613 ATTAGTTAATTTATT
1 ATTA-TTAATGTATT
15009628 ATTATTAATGTA-T
1 ATTATTAATGTATT
15009641 ATTATT-AT-TATT
1 ATTATTAATGTATT
*
15009653 CTTATTAATGTATT
1 ATTATTAATGTATT
* *
15009667 CTTATTATTGTATT
1 ATTATTAATGTATT
15009681 ATT
1 ATT
15009684 GCTATTATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
11 2 0.04
12 8 0.16
13 9 0.18
14 26 0.53
15 4 0.08
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (14 bp):
ATTATTAATGTATT
Found at i:15012348 original size:34 final size:34
Alignment explanation
Indices: 15012305--15012373 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
15012295 CCCTCACAAG
15012305 TATTATGAATATTCAATTCAGTACAATATATCTC
1 TATTATGAATATTCAATTCAGTACAATATATCTC
15012339 TATTATGAATATTCAATTCAGTACAATATATCTC
1 TATTATGAATATTCAATTCAGTACAATATATCTC
15012373 T
1 T
15012374 TTAGGAGAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (34 bp):
TATTATGAATATTCAATTCAGTACAATATATCTC
Found at i:15015955 original size:15 final size:15
Alignment explanation
Indices: 15015932--15015963 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15015922 AAAACAATCT
*
15015932 CTATGTTGAGAACAA
1 CTATATTGAGAACAA
15015947 CTATATTGAGAACAA
1 CTATATTGAGAACAA
15015962 CT
1 CT
15015964 CGTGTTTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (15 bp):
CTATATTGAGAACAA
Found at i:15016721 original size:13 final size:13
Alignment explanation
Indices: 15016703--15016727 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15016693 AACATAAAAA
15016703 TTAAAAAAATCTT
1 TTAAAAAAATCTT
15016716 TTAAAAAAATCT
1 TTAAAAAAATCT
15016728 AAAACTATGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
TTAAAAAAATCTT
Found at i:15016756 original size:26 final size:24
Alignment explanation
Indices: 15016717--15016766 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
15016707 AAAAATCTTT
*
15016717 TAAAAAAATCTAAAACTATGAAAAAA
1 TAAAAAAATATAAAA-T-TGAAAAAA
15016743 TAAAAAAATATAAAATTGAAAAAA
1 TAAAAAAATATAAAATTGAAAAAA
15016767 AATCATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.35
25 1 0.04
26 14 0.61
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (24 bp):
TAAAAAAATATAAAATTGAAAAAA
Found at i:15017004 original size:22 final size:22
Alignment explanation
Indices: 15016979--15017026 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
15016969 ATTTTATATA
*
15016979 ATATTTTGATTTTTTAAAATTT
1 ATATTTTGATATTTTAAAATTT
* *
15017001 ATATTTTTATATTTTAGAATTT
1 ATATTTTGATATTTTAAAATTT
15017023 -TATT
1 ATATT
15017027 AAAAAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (22 bp):
ATATTTTGATATTTTAAAATTT
Found at i:15018139 original size:45 final size:44
Alignment explanation
Indices: 15018090--15018223 Score: 121
Period size: 44 Copynumber: 3.0 Consensus size: 44
15018080 TGTTACAATT
15018090 TTTTATTTTTTACGATTTTTATAAAAATTTCTAATTTTTAATAAA
1 TTTTATTTTTTA-GATTTTTATAAAAATTTCTAATTTTTAATAAA
* * * *
15018135 TTTTAATTTTT-GTATTTTTATTAAAATTTAATAATTTTTGTAA-AAT
1 TTTTATTTTTTAG-ATTTTTATAAAAATTT-CTAA-TTTT-TAATAAA
* ***
15018181 TTATTATTTTTTA-TTTTTTATAATTTTTTCTAATTTTTAATAA
1 TT-TTATTTTTTAGATTTTTATAAAAATTTCTAATTTTTAATAA
15018224 GAGTAGGGGC
Statistics
Matches: 71, Mismatches: 11, Indels: 15
0.73 0.11 0.15
Matches are distributed among these distances:
43 4 0.06
44 21 0.30
45 16 0.23
46 19 0.27
47 11 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (44 bp):
TTTTATTTTTTAGATTTTTATAAAAATTTCTAATTTTTAATAAA
Found at i:15018143 original size:17 final size:19
Alignment explanation
Indices: 15018104--15018145 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
15018094 ATTTTTTACG
15018104 ATTTTTATAAAAATTTCTA
1 ATTTTTATAAAAATTTCTA
*
15018123 ATTTTTA-ATAAATTT-TA
1 ATTTTTATAAAAATTTCTA
15018140 ATTTTT
1 ATTTTT
15018146 GTATTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 7 0.32
19 7 0.32
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTTATAAAAATTTCTA
Found at i:15018159 original size:25 final size:27
Alignment explanation
Indices: 15018123--15018176 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
15018113 AAAATTTCTA
15018123 ATTTTTAAT-AAATTT-TAATTTTTGT
1 ATTTTTAATAAAATTTATAATTTTTGT
*
15018148 ATTTTTATTAAAATTTAATAATTTTTGT
1 ATTTTTAATAAAATTT-ATAATTTTTGT
15018176 A
1 A
15018177 AAATTTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 8 0.32
26 6 0.24
28 11 0.44
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (27 bp):
ATTTTTAATAAAATTTATAATTTTTGT
Found at i:15018191 original size:19 final size:18
Alignment explanation
Indices: 15018147--15018192 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
15018137 TTAATTTTTG
15018147 TATTTTTATTAAAATTTAA
1 TATTTTT-TTAAAATTTAA
* *
15018166 TAATTTTTGTAAAATTTAT
1 T-ATTTTTTTAAAATTTAA
15018185 TATTTTTT
1 TATTTTTT
15018193 ATTTTTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTTTTTTAAAATTTAA
Found at i:15018414 original size:88 final size:87
Alignment explanation
Indices: 15018233--15018430 Score: 195
Period size: 88 Copynumber: 2.2 Consensus size: 87
15018223 AGAGTAGGGG
* *
15018233 CTTAATTGCTTTTTTGAAAAATTTTGAGAGTCTTTTTTATGCATTTTGAAAGTTCAATTGTACCC
1 CTTAATTG-TTTTTTGAAAAAGTTTGAGAGCCTTTTTTATGCATTTTGAAAGTTCAA-TGTACCC
* * * * *
15018298 AATTGAGTGAAAAAAAAGTAGGGG
64 AATTAAATGAAAAAAAAGGAGAGA
* * *
15018322 CTTAATTGTTTTTTGAAAAAGTTTGAG-GACCTTTTTGT-TGCATTTTGAAAGTTTTAA-GTGCT
1 CTTAATTGTTTTTTGAAAAAGTTTGAGAG-CCTTTTT-TATGCATTTTGAAAG-TTCAATGTACC
*
15018384 CAATTAAATGCAAGAAAAAGGAGAGA
63 CAATTAAATG-AAAAAAAAGGAGAGA
* *
15018410 CTTAATTACTTTTTTAAAAAA
1 CTTAATT-GTTTTTTGAAAAA
15018431 AATTTGTGAG
Statistics
Matches: 91, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
87 12 0.13
88 55 0.60
89 24 0.26
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (87 bp):
CTTAATTGTTTTTTGAAAAAGTTTGAGAGCCTTTTTTATGCATTTTGAAAGTTCAATGTACCCAA
TTAAATGAAAAAAAAGGAGAGA
Found at i:15029799 original size:23 final size:24
Alignment explanation
Indices: 15029770--15029815 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
15029760 TTTAATTTTC
15029770 AAAAATTTT-AAAAAATAAAAATA
1 AAAAATTTTCAAAAAATAAAAATA
15029793 AAAAATTTTCAAAAAATAAAAAT
1 AAAAATTTTCAAAAAATAAAAAT
15029816 TACATTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (24 bp):
AAAAATTTTCAAAAAATAAAAATA
Found at i:15029868 original size:29 final size:29
Alignment explanation
Indices: 15029812--15029922 Score: 118
Period size: 30 Copynumber: 3.8 Consensus size: 29
15029802 CAAAAAATAA
* *
15029812 AAATTACATTTTTACCCCTAAACTTTTCCT
1 AAATTTCATTTTAACCCCTAAAC-TTTCCT
* *
15029842 AAATTTCATTTTAACCCTTAAACTTTCTTT
1 AAATTTCATTTTAACCCCTAAACTTTC-CT
*
15029872 AAATTTCA-CTTAGACCCCTAAACTTTCCTT
1 AAATTTCATTTTA-ACCCCTAAACTTTCC-T
*
15029902 AAATTGCATTTTAA-CCCTAAA
1 AAATTTCATTTTAACCCCTAAA
15029923 TTTTTTAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
29 14 0.21
30 51 0.75
31 3 0.04
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.41
Consensus pattern (29 bp):
AAATTTCATTTTAACCCCTAAACTTTCCT
Found at i:15030170 original size:16 final size:17
Alignment explanation
Indices: 15030151--15030194 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 17
15030141 GAGAAAAAAG
15030151 AGCAAAAAAAAAATT-C
1 AGCAAAAAAAAAATTCC
**
15030167 AGC-AAAAAAATTTTCC
1 AGCAAAAAAAAAATTCC
15030183 AGCAAAAAAAAA
1 AGCAAAAAAAAA
15030195 CAACAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 9 0.39
16 7 0.30
17 7 0.30
ACGTcount: A:0.66, C:0.14, G:0.07, T:0.14
Consensus pattern (17 bp):
AGCAAAAAAAAAATTCC
Found at i:15030628 original size:35 final size:36
Alignment explanation
Indices: 15030588--15030672 Score: 95
Period size: 35 Copynumber: 2.4 Consensus size: 36
15030578 GGTTAATTAG
* *
15030588 TGGGTTGGGTTG-GGT-GATATGTTAAGTTAGTGGGT
1 TGGGTTGGGTTGTGGTGGAT-TATTAAGTTAGTGGGC
*
15030623 TGGGTT-GGTTGTGTTGGATTATTAAGTTAGTGGGC
1 TGGGTTGGGTTGTGGTGGATTATTAAGTTAGTGGGC
*
15030658 TGAGGTTGGTTTGTG
1 TG-GGTTGGGTTGTG
15030673 TTGGGTTGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
34 5 0.12
35 24 0.57
36 7 0.17
37 6 0.14
ACGTcount: A:0.13, C:0.01, G:0.44, T:0.42
Consensus pattern (36 bp):
TGGGTTGGGTTGTGGTGGATTATTAAGTTAGTGGGC
Found at i:15031011 original size:17 final size:17
Alignment explanation
Indices: 15030972--15031013 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
15030962 TTTTTATAAC
*
15030972 TATATTATGTACATATA
1 TATATTTTGTACATATA
15030989 TATATTTTGTACATATCA
1 TATATTTTGTACATAT-A
15031007 T-TATTTT
1 TATATTTT
15031014 ATATTATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (17 bp):
TATATTTTGTACATATA
Found at i:15031171 original size:13 final size:13
Alignment explanation
Indices: 15031153--15031177 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15031143 TTTTTATGTA
15031153 TATATTATTATTT
1 TATATTATTATTT
15031166 TATATTATTATT
1 TATATTATTATT
15031178 ACCAAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATTATTATTT
Found at i:15041290 original size:8 final size:8
Alignment explanation
Indices: 15041277--15041309 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
15041267 TTATGCCTAA
15041277 AAAAAAAG
1 AAAAAAAG
15041285 AAAAAAAG
1 AAAAAAAG
15041293 AAAAAAAG
1 AAAAAAAG
15041301 AAAAAAAG
1 AAAAAAAG
15041309 A
1 A
15041310 GAGGGATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:15043754 original size:8 final size:8
Alignment explanation
Indices: 15043741--15043769 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
15043731 TTATGCCTAA
15043741 AAAAAAAG
1 AAAAAAAG
15043749 AAAAAAAG
1 AAAAAAAG
15043757 AAAAAAAG
1 AAAAAAAG
15043765 AAAAA
1 AAAAA
15043770 GAGAGAGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:15052113 original size:14 final size:14
Alignment explanation
Indices: 15052094--15052123 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15052084 GCTGAGGTAA
*
15052094 TTTCAATTTATGTT
1 TTTCAATTTATATT
15052108 TTTCAATTTATATT
1 TTTCAATTTATATT
15052122 TT
1 TT
15052124 GCAAAAAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.67
Consensus pattern (14 bp):
TTTCAATTTATATT
Found at i:15052168 original size:87 final size:87
Alignment explanation
Indices: 15052038--15052605 Score: 531
Period size: 87 Copynumber: 6.7 Consensus size: 87
15052028 TTTGTAAAAA
* * * *
15052038 AAAAAGTCGACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAATTTCAATTT
1 AAAAA-TCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
* *
15052103 ATGTTTTTCAATTTATATTTTGC
65 CTGTTTTTCAATTTATATTTTTC
* * * *
15052126 AAAAAGCAATTCATATTGAGACAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* *
15052191 TGTTCTT-AA-TGACTATTTTT-
66 TGTTTTTCAATTTA-TATTTTTC
*
15052211 --AAATCAACTCATATTGGGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
15052274 TGTTTTTTCCAATCTATATTTTTC
66 TG-TTTTT-CAATTTATATTTTTC
* * * * * *
15052298 AAAAATCAACTCATATTGCGAGAGCTGAATTTAGCCTCAGGACACGTTGAGGTATTTTCGATTTC
1 AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
15052363 TGTTTTTCAATTTATGTTTTTC
66 TGTTTTTCAATTTATATTTTTC
* * *
15052385 AAAAATCAATTCATATT-ACGAGAGGTGAGTTGAGCCT-GGGACACGCTGAGGTAATTTCAA-TT
1 AAAAATCAACTCATATTGA-GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
* ****
15052447 C-CTTTTT---TTT-T-TTAAAA
65 CTGTTTTTCAATTTATATTTTTC
* ** * ***
15052464 AAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATATTGAGGTATTTTCAATTT
1 AAAAA-TCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
*
15052529 CTGTCTTTC-----A-A------
65 CTGTTTTTCAATTTATATTTTTC
* *
15052540 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
15052605 T
64 T
15052606 TTTGCTTTTT
Statistics
Matches: 400, Mismatches: 61, Indels: 49
0.78 0.12 0.10
Matches are distributed among these distances:
75 32 0.08
76 5 0.01
77 20 0.05
79 7 0.02
80 28 0.07
81 20 0.05
82 3 0.01
83 64 0.16
84 9 0.02
85 5 0.01
86 36 0.09
87 102 0.25
88 10 0.03
89 59 0.15
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTATATTTTTC
Found at i:15052375 original size:14 final size:14
Alignment explanation
Indices: 15052352--15052386 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
15052342 CGTTGAGGTA
* *
15052352 TTTTCGATTTCTGT
1 TTTTCAATTTATGT
15052366 TTTTCAATTTATGT
1 TTTTCAATTTATGT
15052380 TTTTCAA
1 TTTTCAA
15052387 AAATCAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.09, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:15052641 original size:78 final size:76
Alignment explanation
Indices: 15052366--15052690 Score: 265
Period size: 78 Copynumber: 4.2 Consensus size: 76
15052356 CGATTTCTGT
* * * * *
15052366 TTTTCAA-TTTATGTTTTTC-AAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCT--GGGAC
1 TTTTCAATTTTTTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGCAC
15052427 ACGCTGAGGTA
66 ACGCTGAGGTA
* * * ** *
15052438 ATTTCAATTCCTTTTTTTTTTTAAAAAAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 TTTTCAA-T--TTTTTGTTTTT--CAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTAAGCCTC
* ***
15052503 AAG-ACATATTGAGGTA
60 AGGCACACGCTGAGGTA
* *
15052519 TTTTCAA-TTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTC
1 TTTTCAATTTTTTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG-C
15052583 ACACGCTGAGGTA
64 ACACGCTGAGGTA
* * *
15052596 TTTTCAATTTTTTGCTTTTTCAAAAGATCAACTCATAATT-CGAGAGGTGAGTTGAA-CTTCGGG
1 TTTTCAATTTTTTG-TTTTTCAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTT-AAGCCTCAGG
* *
15052659 TCGCATC-CCGAGGTA
63 -CACA-CGCTGAGGTA
15052674 TTTTCAA-TTTTTGTTTT
1 TTTTCAATTTTTTGTTTT
15052691 GTTTTTCAAT
Statistics
Matches: 204, Mismatches: 31, Indels: 32
0.76 0.12 0.12
Matches are distributed among these distances:
72 6 0.03
75 32 0.16
76 19 0.09
77 31 0.15
78 55 0.27
79 16 0.08
80 28 0.14
81 16 0.08
82 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (76 bp):
TTTTCAATTTTTTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGCAC
ACGCTGAGGTA
Found at i:15052647 original size:153 final size:151
Alignment explanation
Indices: 15052366--15052650 Score: 353
Period size: 153 Copynumber: 1.9 Consensus size: 151
15052356 CGATTTCTGT
* * * *
15052366 TTTTCAATTTATGTTTTTCAAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCTGGGACACGC
1 TTTTCAATTTATGTCTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCTGGCACACGC
**
15052431 TGAGGTAATTTCAATTCCTTTTTTTTTTTAAAAAAAAAGTCAACTCATATTGCGAGAAATGAGTT
66 TGAGGTAATTTCAATT-CTTTTGCTTTTT-AAAAAAAAGTCAACTCATATTGCGAGAAATGAGTT
15052496 GAGCCTCAAGACATATTGAGGTA
129 GAGCCTCAAGACATATTGAGGTA
* *
15052519 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCA
1 TTTTCAATTTATGTCTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCT--GG-CA
* * * **
15052584 CACGCTGAGGTATTTTCAATT-TTTTGCTTTTT-CAAAAGA-TCAACTCATAATT-CGAGAGGTG
61 CACGCTGAGGTAATTTCAATTCTTTTGCTTTTTAAAAAAAAGTCAACTCAT-ATTGCGAGAAATG
15052645 AGTTGA
125 AGTTGA
15052651 ACTTCGGGTC
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
153 39 0.35
154 8 0.07
155 34 0.30
156 9 0.08
157 2 0.02
158 21 0.19
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.35
Consensus pattern (151 bp):
TTTTCAATTTATGTCTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTAAGCCTGGCACACGC
TGAGGTAATTTCAATTCTTTTGCTTTTTAAAAAAAAGTCAACTCATATTGCGAGAAATGAGTTGA
GCCTCAAGACATATTGAGGTA
Found at i:15052893 original size:23 final size:24
Alignment explanation
Indices: 15052839--15052884 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
15052829 TTTAATTTTC
**
15052839 AAAATTTAAAAAAAATAAAAATAA
1 AAAATTTTCAAAAAATAAAAATAA
15052863 AAAATTTTCAAAAAATAAAAAT
1 AAAATTTTCAAAAAATAAAAAT
15052885 TACATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (24 bp):
AAAATTTTCAAAAAATAAAAATAA
Found at i:15052937 original size:29 final size:29
Alignment explanation
Indices: 15052881--15052997 Score: 130
Period size: 30 Copynumber: 4.0 Consensus size: 29
15052871 CAAAAAATAA
* *
15052881 AAATTACATTTTTACCCCTAAACTTTTCTT
1 AAATTTCATTTTAACCCCTAAAC-TTTCTT
*
15052911 AAATTTCATTTTAACCCTTAAACTTTCTTT
1 AAATTTCATTTTAACCCCTAAACTTTC-TT
*
15052941 AAATTTCA-CTTAGACCCCTAAACTTTCCTT
1 AAATTTCATTTTA-ACCCCTAAACTTT-CTT
* *
15052971 AAATTGCATTTTAA-CCCTAAATTTTCT
1 AAATTTCATTTTAACCCCTAAACTTTCT
15052998 AAAAATTACA
Statistics
Matches: 75, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
28 2 0.03
29 17 0.23
30 52 0.69
31 4 0.05
ACGTcount: A:0.31, C:0.23, G:0.02, T:0.44
Consensus pattern (29 bp):
AAATTTCATTTTAACCCCTAAACTTTCTT
Found at i:15053241 original size:16 final size:17
Alignment explanation
Indices: 15053222--15053263 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
15053212 AAAAAGAGCA
15053222 AAAAAAAAAATT-CAGC
1 AAAAAAAAAATTCCAGC
**
15053238 -AAAAAAATTTTCCAGC
1 AAAAAAAAAATTCCAGC
15053254 AAAAAAAAAA
1 AAAAAAAAAA
15053264 AACAAAAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 3
0.74 0.15 0.11
Matches are distributed among these distances:
15 9 0.45
16 4 0.20
17 7 0.35
ACGTcount: A:0.69, C:0.12, G:0.05, T:0.14
Consensus pattern (17 bp):
AAAAAAAAAATTCCAGC
Found at i:15054058 original size:17 final size:17
Alignment explanation
Indices: 15054000--15054060 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
15053990 TTCCAATTTA
15054000 ATATATATATTTT-T--
1 ATATATATATTTTGTAC
*
15054014 ATA-ACTATATTATGTAC
1 ATATA-TATATTTTGTAC
15054031 ATATATATATTTTGTAC
1 ATATATATATTTTGTAC
15054048 ATATCAT-TATTTT
1 ATAT-ATATATTTT
15054061 ATATTATTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
13 1 0.03
14 10 0.26
15 1 0.03
17 24 0.62
18 3 0.08
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (17 bp):
ATATATATATTTTGTAC
Found at i:15054155 original size:19 final size:20
Alignment explanation
Indices: 15054133--15054213 Score: 60
Period size: 19 Copynumber: 3.9 Consensus size: 20
15054123 TTTATTGTAG
15054133 ATATTATTATTATTAT-TAC
1 ATATTATTATTATTATATAC
*
15054152 ATA-TATTTATTATATGCATATAT
1 ATATTA-TTATTAT-T--ATATAC
* *
15054175 ATATATATGTATTTTTATGTAC
1 ATAT-TAT-TATTATTATATAC
15054197 ATATTATTATT-TTATAT
1 ATATTATTATTATTATAT
15054214 TATTATTACC
Statistics
Matches: 49, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
18 2 0.04
19 15 0.31
20 5 0.10
21 3 0.06
22 10 0.20
23 5 0.10
24 2 0.04
25 7 0.14
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
ATATTATTATTATTATATAC
Found at i:15059014 original size:38 final size:37
Alignment explanation
Indices: 15058943--15059015 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
15058933 TAATTATACA
*
15058943 TTTAAAAATTGTTAGAATTTAAATTATAATTATTAAT
1 TTTAAAAATTGTTAGAATTTAAAATATAATTATTAAT
**
15058980 TTTAAAAATTGTTCTAATTTTAAAATA-AAGTTATTA
1 TTTAAAAATTGTTAGAA-TTTAAAATATAA-TTATTA
15059016 GTTGAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 17 0.55
38 14 0.45
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (37 bp):
TTTAAAAATTGTTAGAATTTAAAATATAATTATTAAT
Found at i:15059257 original size:20 final size:21
Alignment explanation
Indices: 15059208--15059258 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
15059198 TGTATGTTGA
*
15059208 ATATGTTAAAATTTCTTTAATT
1 ATAT-TTAAAATTTCTCTAATT
15059230 ATATTTAAAATTT-TCT-ATT
1 ATATTTAAAATTTCTCTAATT
15059249 ATAATTTAAA
1 AT-ATTTAAA
15059259 TTGTAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 5 0.19
20 9 0.33
21 9 0.33
22 4 0.15
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (21 bp):
ATATTTAAAATTTCTCTAATT
Found at i:15059331 original size:300 final size:305
Alignment explanation
Indices: 15058994--15059586 Score: 1053
Period size: 299 Copynumber: 2.0 Consensus size: 305
15058984 AAAATTGTTC
15058994 TAATTTTAAAATAAAGTTATTAGTTGAATAAAATTCTAAGTATAAAATATAGGAAAAATGTTGTG
1 TAATTTTAAAATAAAGTTATTAGTTGAATAAAATTCTAAGTATAAAATATAGG-AAAATGTTGTG
15059059 ATAATTTTATTGATGTAAAATAGAGTTATTATTTCAATAGAATTCTAAGCATATTAATTATCACT
65 ATAATTTTATTGATGTAAAATAGAGTTATTATTTCAATAGAATTCTAAGCATATTAATTA--ACT
*
15059124 AAATTAATATTAGAGTTAATTAGTTATT-TTTTGAATAATGTTA-TTTACATTAATTACATAAAA
128 AAATTAATATTA-AATTAATTAGTTATTATTTTGAATAATGTTACTTTACATTAATTACATAAAA
15059187 TAAAACCATATTGTATGTTGAATATGTTAAAATTTCTTTAATTA-TATTT-AAAATTTTCTATTA
192 TAAAACCATATTGTATGTTGAATATGTTAAAATTTCTTTAATTATTATTTGAAAATTTTCTATTA
15059250 T-A-ATTTAAATTG-TAAATTAATATATTTT-ATTATTTTAATTAAAAA
257 TAATATTTAAATTGATAAATTAATATATTTTGATTATTTTAATTAAAAA
15059295 TAATTTTATAAAT-AAGTTATTAGTTGAA-AAAATTCTAAGTATAAAATATAGGAAAATGTTGTG
1 TAATTTTA-AAATAAAGTTATTAGTTGAATAAAATTCTAAGTATAAAATATAGGAAAATGTTGTG
15059358 ATAATTTTATTGATGTAAAATAGAGTTATTATTTCAATAGAATTCTAAGCATATTAATTAACTAA
65 ATAATTTTATTGATGTAAAATAGAGTTATTATTTCAATAGAATTCTAAGCATATTAATTAACTAA
15059423 ATTAATATTAAATTAATTAGTTATTATTTTGAATAATGTTACTTTACATTAATTACATAAAATAA
130 ATTAATATTAAATTAATTAGTTATTATTTTGAATAATGTTACTTTACATTAATTACATAAAATAA
15059488 AACCATATTGTATGTTGAATATGTTAAAATTTCTTTAATTATTATTTGAAAATTTTCTATTATAA
195 AACCATATTGTATGTTGAATATGTTAAAATTTCTTTAATTATTATTTGAAAATTTTCTATTATAA
*
15059553 TATTTAAATTGATAAGTTAATATATTTTGATTAT
260 TATTTAAATTGATAAATTAATATATTTTGATTAT
15059587 ATTCAATAAT
Statistics
Matches: 281, Mismatches: 2, Indels: 15
0.94 0.01 0.05
Matches are distributed among these distances:
296 14 0.05
297 30 0.11
298 64 0.23
299 76 0.27
300 39 0.14
301 24 0.09
302 14 0.05
303 15 0.05
304 5 0.02
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (305 bp):
TAATTTTAAAATAAAGTTATTAGTTGAATAAAATTCTAAGTATAAAATATAGGAAAATGTTGTGA
TAATTTTATTGATGTAAAATAGAGTTATTATTTCAATAGAATTCTAAGCATATTAATTAACTAAA
TTAATATTAAATTAATTAGTTATTATTTTGAATAATGTTACTTTACATTAATTACATAAAATAAA
ACCATATTGTATGTTGAATATGTTAAAATTTCTTTAATTATTATTTGAAAATTTTCTATTATAAT
ATTTAAATTGATAAATTAATATATTTTGATTATTTTAATTAAAAA
Found at i:15059869 original size:18 final size:18
Alignment explanation
Indices: 15059848--15059882 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15059838 AAAATTAAAA
*
15059848 ATATTATAAAAAATAACG
1 ATATTAGAAAAAATAACG
*
15059866 ATATTAGAAATAATAAC
1 ATATTAGAAAAAATAAC
15059883 ATGAGTGATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
ATATTAGAAAAAATAACG
Found at i:15060982 original size:26 final size:26
Alignment explanation
Indices: 15060951--15061000 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15060941 AAACATAATT
15060951 TCAAATGAGAGACTTTTGAGTTTTCA
1 TCAAATGAGAGACTTTTGAGTTTTCA
* *
15060977 TCAAATGAGGGATTTTTGAGTTTT
1 TCAAATGAGAGACTTTTGAGTTTT
15061001 AGGTGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (26 bp):
TCAAATGAGAGACTTTTGAGTTTTCA
Found at i:15062191 original size:36 final size:37
Alignment explanation
Indices: 15062135--15062210 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 37
15062125 ATAATTTATG
15062135 GTACAAATTGATACAAATTGATAATAGGTTAGGTAAAT
1 GTACAAATTGATAC-AATTGATAATAGGTTAGGTAAAT
15062173 GTACAAATTGATAC-ATTGATAATAGGTTAGGTAAAT
1 GTACAAATTGATACAATTGATAATAGGTTAGGTAAAT
15062209 GT
1 GT
15062211 TTCATGACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 24 0.63
38 14 0.37
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (37 bp):
GTACAAATTGATACAATTGATAATAGGTTAGGTAAAT
Found at i:15062232 original size:26 final size:26
Alignment explanation
Indices: 15062189--15062298 Score: 157
Period size: 26 Copynumber: 4.2 Consensus size: 26
15062179 ATTGATACAT
*
15062189 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * * * *
15062215 TGACAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15062241 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
15062267 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
15062293 TGATAA
1 TGATAA
15062299 GAATTTCATG
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:15066026 original size:25 final size:25
Alignment explanation
Indices: 15065995--15066045 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
15065985 TAAGAGTTTG
15065995 TACTCATCCTCAATTTCACTGTAGT
1 TACTCATCCTCAATTTCACTGTAGT
*
15066020 TACTCATCCTCAATTTCATTGTAGT
1 TACTCATCCTCAATTTCACTGTAGT
15066045 T
1 T
15066046 TTAGCATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.25, G:0.08, T:0.43
Consensus pattern (25 bp):
TACTCATCCTCAATTTCACTGTAGT
Found at i:15067560 original size:3 final size:3
Alignment explanation
Indices: 15067552--15067609 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
15067542 TAATTCCTAC
15067552 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15067600 TAT TAT TAT T
1 TAT TAT TAT T
15067610 TGTAAAATAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:15069057 original size:11 final size:11
Alignment explanation
Indices: 15069038--15069070 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
15069028 CCCCTTCCCC
15069038 CTCCCTTCTCT
1 CTCCCTTCTCT
15069049 CTCCCTTCTCT
1 CTCCCTTCTCT
15069060 CTTCCC-TCTCT
1 C-TCCCTTCTCT
15069071 TTTCTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:15069559 original size:3 final size:3
Alignment explanation
Indices: 15069551--15069810 Score: 231
Period size: 3 Copynumber: 83.7 Consensus size: 3
15069541 TGTATTTCAA
15069551 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
15069599 TAT TAT TAT CAT TAT TAT CAT TAT TAT TGT ACAT TAGT GTAT ATCT TCAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA-T -TAT -TAT T-AT
* * * * *
15069649 GTAT GTAT ATAT ATAT GTAG TAA TAT TTT TAT TAC T-T TAT T-T TAA
1 -TAT -TAT -TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
15069694 TAT TTT TAT TA- TAA TAGCT TTT GTAT T-T CAA TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TA--T TAT -TAT TAT TAT TAT TAT TAT TAT TAT
15069740 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
15069788 TAT TAT TAT TAT TAT TAT CAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
15069811 ACATTACTAT
Statistics
Matches: 212, Mismatches: 33, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
2 6 0.03
3 179 0.84
4 23 0.11
5 4 0.02
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:15078650 original size:73 final size:75
Alignment explanation
Indices: 15078470--15078682 Score: 259
Period size: 73 Copynumber: 2.8 Consensus size: 75
15078460 TCCAAAGATA
* * * *
15078470 AACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGACAAGTTGAGGTATTGTCAATTTTTTGGATT
1 AACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTATTTTCAA-TTTCT-GTTT
15078535 GTTCAAAAAATC
64 GTTCAAAAAATC
* * * * * *
15078547 AACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACGCTGTGGTATTTTCAATTACTGTTTG-
1 AACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTATTTTCAATTTCTGTTTGT
15078611 TC-AAAAATC
66 TCAAAAAATC
* ** * *
15078620 AACTCATACTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTCTGTTT
1 AACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTATTTTCAATTTCTGTTT
15078683 TCTCCAATTT
Statistics
Matches: 117, Mismatches: 19, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
73 61 0.52
74 2 0.02
75 4 0.03
76 3 0.03
77 47 0.40
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (75 bp):
AACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTATTTTCAATTTCTGTTTGT
TCAAAAAATC
Found at i:15078783 original size:76 final size:75
Alignment explanation
Indices: 15078692--15078914 Score: 270
Period size: 75 Copynumber: 2.9 Consensus size: 75
15078682 TTCTCCAATT
* ** * *
15078692 TATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTTGGGACACGCCGAGATATT
1 TATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
*
15078757 GTCAATTTTTTA
65 TTCAA-TTTTTA
* * *
15078769 TATGTTTCAAAAATCAATTCATATTGCAAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTATTT
1 TATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
*
15078834 TCAA--TTTC
66 TCAATTTTTA
* ** *
15078842 TGTCCTTCAAAAAAATCAACTCATATTTCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
1 TATGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
15078907 TTTCAATT
64 TTTCAATT
15078915 GATGATTTGC
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
73 8 0.06
75 57 0.46
76 56 0.45
77 4 0.03
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (75 bp):
TATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
TCAATTTTTA
Found at i:15078828 original size:164 final size:161
Alignment explanation
Indices: 15078540--15078844 Score: 414
Period size: 164 Copynumber: 1.9 Consensus size: 161
15078530 GGATTGTTCA
* * * * *
15078540 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACGCTGTGGTATTTTCAATTAC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGCCGAGATATTGTCAATTAC
* * *
15078605 TGTTTGTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTAATT
66 TGTTTGTCAAAAATCAACTCATACTGCAAGAGGTGAGTTAAGCCTCAAGACACGCTGAGGTAATT
15078670 TCAATTTCTGTTTTCTCCAATTTATGTTTTC
131 TCAATTTCTGTTTTCTCCAATTTATGTTTTC
* * * *
15078701 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTTGGGACACGCCGAGATATTGTCAATT-T
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGCCGAGATATTGTCAATTAC
* * * *
15078765 TTTATATGTTTCAAAAATCAATTCATATTGCAAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGT
66 TGT-T-TG--TCAAAAATCAACTCATACTGCAAGAGGTGAGTTAAGCCTCAAGACACGCTGAGGT
*
15078830 ATTTTCAATTTCTGT
127 AATTTCAATTTCTGT
15078845 CCTTCAAAAA
Statistics
Matches: 123, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
160 2 0.02
161 56 0.46
162 2 0.02
164 63 0.51
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (161 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGCCGAGATATTGTCAATTAC
TGTTTGTCAAAAATCAACTCATACTGCAAGAGGTGAGTTAAGCCTCAAGACACGCTGAGGTAATT
TCAATTTCTGTTTTCTCCAATTTATGTTTTC
Found at i:15078937 original size:237 final size:238
Alignment explanation
Indices: 15078470--15078978 Score: 661
Period size: 239 Copynumber: 2.1 Consensus size: 238
15078460 TCCAAAGATA
* * ** *
15078470 AACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGACAAGTTGAGGTATTGTCAATTTTTTGGATT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACAAGCCGAGATATTGTCAATTTTTT-GATT
* * * * *
15078535 GTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACGCTGTGGTATTTTCA
65 GTTCAAAAAATCAACTCATATTACAAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTATTTTCA
* *
15078600 ATTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGG
130 ATTACTGTCTGTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
** * *
15078665 TAATTTCAATTTCTGTTTTCTCCAATTTATGTTTTC-AAAAATC
195 TAATTTCAATTGATGTATTCTCCAAATTATGTTTTCAAAAAATC
* *
15078708 AACTCATATTGCGAGAGGTGAGTTGAGGCTTGGGACACGCCGAGATATTGTCAATTTTTT-ATAT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACAAGCCGAGATATTGTCAATTTTTTGAT-T
* *
15078772 GTTTC-AAAAATCAATTCATATTGCAAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTATTTTC
65 G-TTCAAAAAATCAACTCATATTACAAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTATTTTC
* * * *
15078836 AATTTCTGTCCT-TCAAAAAAATCAACTCATATTTCGAGAGGTGAGTTGAGCCTCAGGACACGCT
129 AATTACTGT-CTGTC--AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAAGACACGCT
* * *
15078900 GAGGTATTTTCAATTGATG-ATT-TGCAAATTCTGTTTTCAAAAAAATC
191 GAGGTAATTTCAATTGATGTATTCTCCAAATTATGTTTTC-AAAAAATC
*
15078947 AACTCATATTGCGAGAAGTGAGTTGAGCCTTG
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTTG
15078979 ACTCGCGTGC
Statistics
Matches: 235, Mismatches: 29, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
236 2 0.01
237 77 0.33
238 59 0.25
239 97 0.41
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (238 bp):
AACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACAAGCCGAGATATTGTCAATTTTTTGATTG
TTCAAAAAATCAACTCATATTACAAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTATTTTCAA
TTACTGTCTGTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTGATGTATTCTCCAAATTATGTTTTCAAAAAATC
Found at i:15080124 original size:13 final size:13
Alignment explanation
Indices: 15080106--15080160 Score: 58
Period size: 13 Copynumber: 4.1 Consensus size: 13
15080096 TATATACATC
15080106 ATAATAAAAAAAT
1 ATAATAAAAAAAT
*
15080119 ATAATAAAAATAT
1 ATAATAAAAAAAT
*
15080132 ATATACAAAACAAAT
1 ATA-ATAAAA-AAAT
15080147 ATTAA-AAAAAAAT
1 A-TAATAAAAAAAT
15080160 A
1 A
15080161 CCTTTTCCGG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
13 20 0.56
14 9 0.25
15 5 0.14
16 2 0.06
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAATAAAAAAAT
Found at i:15080273 original size:11 final size:11
Alignment explanation
Indices: 15080257--15080289 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
15080247 CCCTTCCCCC
15080257 CTCCCTTCTCT
1 CTCCCTTCTCT
15080268 CTCCCTTCTCT
1 CTCCCTTCTCT
15080279 CTTCCC-TCTCT
1 C-TCCCTTCTCT
15080290 TTTCTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:15080777 original size:3 final size:3
Alignment explanation
Indices: 15080769--15080960 Score: 122
Period size: 3 Copynumber: 61.0 Consensus size: 3
15080759 TTTATTTCAA
15080769 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
15080817 TGT ACAT TAGT GTAT ATCT TCAT GTAT GTAT ATAT ATAT GTAG TAA TAT
1 TAT -TAT TA-T -TAT -TAT T-AT -TAT -TAT -TAT -TAT -TAT TAT TAT
* * * * * *
15080866 TTT TAT TAC T-T TAT T-T TAA TAT TTT TAT TA- TAA TAGCT TTT GTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA--T TAT -TAT
* *
15080911 T-T CAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15080958 TAT
1 TAT
15080961 CATTGACATT
Statistics
Matches: 150, Mismatches: 27, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
2 6 0.04
3 117 0.78
4 23 0.15
5 4 0.03
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:15080998 original size:147 final size:149
Alignment explanation
Indices: 15080756--15081047 Score: 423
Period size: 147 Copynumber: 2.0 Consensus size: 149
15080746 AATATTAAAA
* *
15080756 TTTTTTATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTA
1 TTTTGTATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTGTA
* * * *
15080821 CATTAGTGTATATCTTCATGTATGTATATATATATGTAGTAATATTTTT-ATTACTTTATTTTAA
66 CATTACTATATATCTTCATGTATGTATATATATATATAGTAATATTTTTAATGACTTTATTTTAA
15080885 TAT-TTTTATTATAATAGC
131 TATATTTTATTATAATAGC
15080903 TTTTGTATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTG-A
1 TTTTGTATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTGTA
* * * *
15080967 CATTACTATATATTCTT-AT-TAGATGTGTATATATATATATTACTGTTTTTAATGACTTTATTT
66 CATTACTATATA-TCTTCATGT--ATGTATATATATATATAGTAATATTTTTAATGACTTTATTT
15081030 TAATATCATTTTATTATA
128 TAATAT-ATTTTATTATA
15081048 TTTATTTTTT
Statistics
Matches: 129, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
145 1 0.01
146 13 0.10
147 88 0.68
148 17 0.13
150 10 0.08
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (149 bp):
TTTTGTATTTCAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTGTA
CATTACTATATATCTTCATGTATGTATATATATATATAGTAATATTTTTAATGACTTTATTTTAA
TATATTTTATTATAATAGC
Found at i:15081235 original size:10 final size:9
Alignment explanation
Indices: 15081154--15081283 Score: 63
Period size: 8 Copynumber: 13.3 Consensus size: 9
15081144 AAATTTTTTA
15081154 ATATATATT
1 ATATATATT
15081163 ATATGAATAATT
1 ATAT--AT-ATT
*
15081175 -TATATATA
1 ATATATATT
15081183 ATAT-TATGT
1 ATATATAT-T
*
15081192 ATATATTTT
1 ATATATATT
15081201 AGTATTATCAGTT
1 A-TA-TAT-A-TT
*
15081214 ATATATCTTT
1 ATATAT-ATT
15081224 ATACTATATT
1 ATA-TATATT
15081234 ATCTAATACTATT
1 A--T-ATA-TATT
15081247 ATATATA-T
1 ATATATATT
15081255 ATATATA-T
1 ATATATATT
15081263 ATATATA-T
1 ATATATATT
15081271 ATATATATGT
1 ATATATAT-T
15081281 ATA
1 ATA
15081284 AGTATGTGTG
Statistics
Matches: 98, Mismatches: 6, Indels: 33
0.72 0.04 0.24
Matches are distributed among these distances:
8 29 0.30
9 17 0.17
10 19 0.19
11 16 0.16
12 8 0.08
13 9 0.09
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (9 bp):
ATATATATT
Done.