Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 53 of 328
Found at i:15081253 original size:2 final size:2
Alignment explanation
Indices: 15081246--15081283 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
15081236 CTAATACTAT
*
15081246 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15081284 AGTATGTGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15081470 original size:16 final size:16
Alignment explanation
Indices: 15081451--15081489 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
15081441 TCTTATGTAT
15081451 ATATTACCTTATATTA
1 ATATTACCTTATATTA
15081467 ATATTACCTTATATTA
1 ATATTACCTTATATTA
*
15081483 TTATTAC
1 ATATTAC
15081490 TAAATGTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTACCTTATATTA
Found at i:15090112 original size:24 final size:22
Alignment explanation
Indices: 15090068--15090114 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 22
15090058 GGGTTCTTTA
15090068 TCATTTTCATTTTTTTAATGAT
1 TCATTTTCATTTTTTTAATGAT
15090090 TCATTTCTCATTCTTTTGT-ATGAT
1 TCATTT-TCATT-TTTT-TAATGAT
15090114 T
1 T
15090115 TTTATGAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 5 0.23
24 10 0.45
25 1 0.05
ACGTcount: A:0.19, C:0.13, G:0.06, T:0.62
Consensus pattern (22 bp):
TCATTTTCATTTTTTTAATGAT
Found at i:15093546 original size:27 final size:29
Alignment explanation
Indices: 15093516--15093575 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
15093506 TTTTTTACCT
* *
15093516 AAAAAAATAT-AAAAA-ATATTAATTATG
1 AAAAAAATATGAAAAATAAATTAATTACG
**
15093543 AAAAAGTTATGAAAAATAAATTAATTACG
1 AAAAAAATATGAAAAATAAATTAATTACG
15093572 AAAA
1 AAAA
15093576 TAGGCATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 8 0.30
28 5 0.19
29 14 0.52
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.27
Consensus pattern (29 bp):
AAAAAAATATGAAAAATAAATTAATTACG
Found at i:15096978 original size:12 final size:11
Alignment explanation
Indices: 15096910--15097009 Score: 62
Period size: 12 Copynumber: 8.8 Consensus size: 11
15096900 ACACATACAT
*
15096910 TAATATATATAT
1 TAATATA-ATAA
15096922 TAATATGAATAA
1 TAATAT-AATAA
* *
15096934 TAAAAATAATGA
1 T-AATATAATAA
**
15096946 TAATATGTTAA
1 TAATATAATAA
*
15096957 TAAATATAATAG
1 T-AATATAATAA
15096969 TAATAT--TAA
1 TAATATAATAA
*
15096978 TAATAATAATAG
1 TAAT-ATAATAA
15096990 TAAATATAATAA
1 T-AATATAATAA
15097002 TAA-ATAAT
1 TAATATAAT
15097010 GTTACAAGTA
Statistics
Matches: 68, Mismatches: 13, Indels: 16
0.70 0.13 0.16
Matches are distributed among these distances:
9 6 0.09
10 7 0.10
11 14 0.21
12 33 0.49
13 8 0.12
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (11 bp):
TAATATAATAA
Found at i:15096983 original size:3 final size:3
Alignment explanation
Indices: 15096929--15097009 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
15096919 TATTAATATG
* * ** *
15096929 AAT AAT AAA AAT AAT GAT AAT -AT GTT AAT AA- ATAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* *
15096973 ATT AAT AAT AAT AAT AGT AA- ATAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT -AAT AAT
15097010 GTTACAAGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
2 4 0.07
3 50 0.85
4 5 0.08
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:15096998 original size:15 final size:15
Alignment explanation
Indices: 15096954--15097004 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
15096944 GATAATATGT
*
15096954 TAATAAATATAATAG
1 TAATAAATATAATAA
15096969 TAATATTAATAATAATAA
1 TAATA--AAT-ATAATAA
*
15096987 TAGTAAATATAATAA
1 TAATAAATATAATAA
15097002 TAA
1 TAA
15097005 ATAATGTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 14 0.47
16 3 0.10
17 3 0.10
18 10 0.33
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (15 bp):
TAATAAATATAATAA
Found at i:15097684 original size:13 final size:13
Alignment explanation
Indices: 15097649--15097690 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
15097639 ACATGTAAAC
15097649 AAAGAAAAAAAGA
1 AAAGAAAAAAAGA
15097662 GTAAAG--AAAAAGA
1 --AAAGAAAAAAAGA
15097675 AAAGAAAAAAAGA
1 AAAGAAAAAAAGA
15097688 AAA
1 AAA
15097691 CCGATTCGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 4 0.16
13 17 0.68
15 4 0.16
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (13 bp):
AAAGAAAAAAAGA
Found at i:15098548 original size:43 final size:44
Alignment explanation
Indices: 15098495--15098741 Score: 247
Period size: 43 Copynumber: 5.7 Consensus size: 44
15098485 CATCATTGAT
*
15098495 CTGTTTCCCTACTGCTTAGGGGTTTAAGATCT-ATAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTCATAAATTTAGC
* *
15098538 CCGTTACCCTACTGCTTAGGGGTTTAAGATCTGA-AAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTCATAAATTTAGC
* * ** * *
15098581 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTCATCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTCATAAATTTAG-C
* *
15098625 CTGTTTCCCTACTGCTTAGGAGG-TTAAGATCT-GTAAATTTAGC
1 CTGTTACCCTACTGCTTAGG-GGTTTAAGATCTCATAAATTTAGC
* * * **
15098668 CTATTACCCTACTGCTTAGGGGTTTAAGACTCGTCAT--CTTCAAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGA-TC-TCATAAATTTAGC
* *
15098712 CTGTTTCCCTACTGCTTAGGGGGTTAAGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGAT
15098742 ATGTAAATCT
Statistics
Matches: 167, Mismatches: 28, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
42 5 0.03
43 95 0.57
44 61 0.37
45 5 0.03
46 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGATCTCATAAATTTAGC
Found at i:15098683 original size:130 final size:130
Alignment explanation
Indices: 15098450--15098696 Score: 392
Period size: 130 Copynumber: 1.9 Consensus size: 130
15098440 TGATTTTCAA
**
15098450 CCTGTTACCCTACTGCTTAAGGGGTTAAGGCTTGTCATCATTGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAAGGGGTTAAGGCTCATCATCATTGATCTGTTTCCCTACTGCTTAGG
*
15098515 GGTTTAAGATCTATAAATTTAGCCCGTTACCCTACTGCTTAGGGGTTTAAGATCTGAAAATTTAG
66 GGTTTAAGATCTATAAATTTAGCCCATTACCCTACTGCTTAGGGGTTTAAGATCTGAAAATTTAG
*
15098580 CCTGTTACCCTACTGCTT-AGGGGTTTAAGGCTCATCA-CCTTCGATCTGTTTCCCTACTGCTTA
1 CCTGTTACCCTACTGCTTAAGGGG-TTAAGGCTCATCATCATT-GATCTGTTTCCCTACTGCTTA
* *
15098643 GGAGG-TTAAGATCTGTAAATTTAGCCTATTACCCTACTGCTTAGGGGTTTAAGA
64 GG-GGTTTAAGATCTATAAATTTAGCCCATTACCCTACTGCTTAGGGGTTTAAGA
15098697 CTCGTCATCT
Statistics
Matches: 108, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
129 8 0.07
130 98 0.91
131 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (130 bp):
CCTGTTACCCTACTGCTTAAGGGGTTAAGGCTCATCATCATTGATCTGTTTCCCTACTGCTTAGG
GGTTTAAGATCTATAAATTTAGCCCATTACCCTACTGCTTAGGGGTTTAAGATCTGAAAATTTAG
Found at i:15098747 original size:87 final size:87
Alignment explanation
Indices: 15098501--15098749 Score: 331
Period size: 87 Copynumber: 2.9 Consensus size: 87
15098491 TGATCTGTTT
** * ** * * *
15098501 CCCTACTGCTTAGGGGTTTAAGA-TCTAT-AAATTTAGCCCGTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGGGGTTTAAGACTC-ATCACCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTA
* *
15098564 AGATCTGAAAATTTAGCCTGTTA
65 AGATCTGTAAATTTAGCCTATTA
* * *
15098587 CCCTACTGCTTAGGGGTTTAAGGCTCATCACCTTCGATCTGTTTCCCTACTGCTTAGGAGGTTAA
1 CCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTAA
15098652 GATCTGTAAATTTAGCCTATTA
66 GATCTGTAAATTTAGCCTATTA
* *
15098674 CCCTACTGCTTAGGGGTTTAAGACTCGTCATCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTAA
1 CCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTAA
*
15098739 GATATGTAAAT
66 GATCTGTAAAT
15098750 CTTCAATCTG
Statistics
Matches: 142, Mismatches: 19, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
86 24 0.17
87 118 0.83
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (87 bp):
CCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGGGGGTTAA
GATCTGTAAATTTAGCCTATTA
Found at i:15098952 original size:44 final size:44
Alignment explanation
Indices: 15098891--15099045 Score: 143
Period size: 44 Copynumber: 3.5 Consensus size: 44
15098881 AAATTTGGCT
* *
15098891 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATCTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGATCATTAACTTCGATC
* * * * * *
15098935 CGTTTCCCTACTGCTTAGGGTGAT-AAGATCTATGAACTTC-AGC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGATC-ATTAACTTCGATC
* * **
15098978 TTGTTACCCTACTGCTTAGGGGGTTAAAGTTCGTTGCCTTCGATC
1 -TGTTACCCTACTGCTTAGGGGGTTAAAGATCATTAACTTCGATC
* * *
15099023 TATTCCCCTACTGCTTATGGGGT
1 TGTTACCCTACTGCTTAGGGGGT
15099046 AAGATCTGGA
Statistics
Matches: 86, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
43 7 0.08
44 72 0.84
45 7 0.08
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (44 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGATCATTAACTTCGATC
Found at i:15098989 original size:88 final size:87
Alignment explanation
Indices: 15098888--15099052 Score: 242
Period size: 88 Copynumber: 1.9 Consensus size: 87
15098878 TGTAAATTTG
* * *
15098888 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATCTTCGATCCGTTTCCCTACTGCTTA-
1 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATCCATTCCCCTACTGCTTAT
15098952 GGGTGATAAGATCTATGAACTTCA
66 GGG-G-TAAGATCTATGAACTTCA
* * * *
15098976 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGTTCGTTGCCTTCGATCTATTCCCCTACTGCTTAT
1 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATCCATTCCCCTACTGCTTAT
15099041 GGGGTAAGATCT
66 GGGGTAAGATCT
15099053 GGAAATTCAC
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
87 8 0.12
88 58 0.84
89 3 0.04
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (87 bp):
GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTACCTTCGATCCATTCCCCTACTGCTTAT
GGGGTAAGATCTATGAACTTCA
Found at i:15099878 original size:8 final size:8
Alignment explanation
Indices: 15099865--15099897 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
15099855 TGGCCCATTT
15099865 TTTTTTTA
1 TTTTTTTA
15099873 TTTTTTTA
1 TTTTTTTA
15099881 TTTTTTTAA
1 TTTTTTT-A
15099890 TTTTTTTA
1 TTTTTTTA
15099898 GGCAAAGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTTA
Found at i:15099884 original size:17 final size:17
Alignment explanation
Indices: 15099864--15099897 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15099854 CTGGCCCATT
*
15099864 TTTTTTTTATTTTTTTA
1 TTTTTTTAATTTTTTTA
15099881 TTTTTTTAATTTTTTTA
1 TTTTTTTAATTTTTTTA
15099898 GGCAAAGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTTAATTTTTTTA
Found at i:15099897 original size:9 final size:9
Alignment explanation
Indices: 15099864--15099897 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
15099854 CTGGCCCATT
*
15099864 TTTTTTTTA
1 TTTTTTTAA
15099873 TTTTTTT-A
1 TTTTTTTAA
15099881 TTTTTTTAA
1 TTTTTTTAA
15099890 TTTTTTTA
1 TTTTTTTA
15099898 GGCAAAGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:15111073 original size:2 final size:2
Alignment explanation
Indices: 15111066--15111090 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15111056 GAATATAATG
15111066 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
15111091 TTAAAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15111532 original size:12 final size:11
Alignment explanation
Indices: 15111464--15111563 Score: 62
Period size: 12 Copynumber: 8.8 Consensus size: 11
15111454 AAACATACAT
*
15111464 TAATATATATAT
1 TAATATA-ATAA
15111476 TAATATGAATAA
1 TAATAT-AATAA
* *
15111488 TAAAAATAATGA
1 T-AATATAATAA
**
15111500 TAATATGTTAA
1 TAATATAATAA
*
15111511 TAAATATAATAG
1 T-AATATAATAA
15111523 TAATAT--TAA
1 TAATATAATAA
*
15111532 TAATAATAATAG
1 TAAT-ATAATAA
15111544 TAAATATAATAA
1 T-AATATAATAA
15111556 TAA-ATAAT
1 TAATATAAT
15111564 GTTACAAGTA
Statistics
Matches: 68, Mismatches: 13, Indels: 16
0.70 0.13 0.16
Matches are distributed among these distances:
9 6 0.09
10 7 0.10
11 14 0.21
12 33 0.49
13 8 0.12
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (11 bp):
TAATATAATAA
Found at i:15111537 original size:3 final size:3
Alignment explanation
Indices: 15111483--15111563 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
15111473 TATTAATATG
* * ** *
15111483 AAT AAT AAA AAT AAT GAT AAT -AT GTT AAT AA- ATAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* *
15111527 ATT AAT AAT AAT AAT AGT AA- ATAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT -AAT AAT
15111564 GTTACAAGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
2 4 0.07
3 50 0.85
4 5 0.08
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:15111552 original size:15 final size:15
Alignment explanation
Indices: 15111508--15111558 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
15111498 GATAATATGT
*
15111508 TAATAAATATAATAG
1 TAATAAATATAATAA
15111523 TAATATTAATAATAATAA
1 TAATA--AAT-ATAATAA
*
15111541 TAGTAAATATAATAA
1 TAATAAATATAATAA
15111556 TAA
1 TAA
15111559 ATAATGTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 14 0.47
16 3 0.10
17 3 0.10
18 10 0.33
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (15 bp):
TAATAAATATAATAA
Found at i:15112203 original size:13 final size:13
Alignment explanation
Indices: 15112168--15112209 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
15112158 ACATGTAAAC
15112168 AAAGAAAAAAAGA
1 AAAGAAAAAAAGA
15112181 GTAAAG--AAAAAGA
1 --AAAGAAAAAAAGA
15112194 AAAGAAAAAAAGA
1 AAAGAAAAAAAGA
15112207 AAA
1 AAA
15112210 CCGATTCGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 4 0.16
13 17 0.68
15 4 0.16
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (13 bp):
AAAGAAAAAAAGA
Found at i:15113906 original size:3 final size:3
Alignment explanation
Indices: 15113900--15114287 Score: 140
Period size: 3 Copynumber: 127.7 Consensus size: 3
15113890 AACAATGATG
* * * * * *
15113900 ATA ATA ATA ATA ATA ATA AGTA ATA AAA ATG ACA ACA ATG ATA ACA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
* ** * * *
15113946 ATA ATA ATA ATA ATA ATA ATA ATA AGCA GCA AAA AAA AGTA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA A-TA ATA ATA
* * * * * * * *
15113993 ATA ATA TTA ACA GTA ATG ATA ATG GTA ATA ATAA ATA ATA GTA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
* * * * *
15114039 ATA ATA ATA TTA GTA ATA ATA AT- ATA TTA A-A TTA GTTA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
*
15114082 ATA ATA ACGT- ATA AGTA A-A CA-A AAA ATA TATA ATA ATAA ATA A-A
1 ATA ATA A--TA ATA A-TA ATA -ATA ATA ATA -ATA ATA AT-A ATA ATA
* * * * * *
15114126 AGA A-A GGTGA CA-A ATA TATA A-A ATA ATA GTA ACA GTA ATA A-G ATA
1 ATA ATA -AT-A -ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
15114171 A-A TATA AT- ATA ATA A-A TATA ATA ATA ATA AGA ATA AAA ATA ATA
1 ATA -ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
15114215 ACA CATTA CTA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TATA
1 ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* *
15114263 ATA ATA ACA ACA ATA A-A ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
15114288 GGCGATAATA
Statistics
Matches: 288, Mismatches: 64, Indels: 66
0.69 0.15 0.16
Matches are distributed among these distances:
2 21 0.07
3 233 0.81
4 31 0.11
5 3 0.01
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:15113926 original size:43 final size:42
Alignment explanation
Indices: 15113878--15113967 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 42
15113868 AATATAACAA
* *
15113878 AATAAAAATGACAACAATGATGATAATAATAATAATAATAAGT
1 AATAAAAATGACAACAATGATAACAATAATAATAATAATAA-T
15113921 AATAAAAATGACAACAATGATAACAATAATAATAATAATAAT
1 AATAAAAATGACAACAATGATAACAATAATAATAATAATAAT
15113963 AATAA
1 AATAA
15113968 TAAGCAGCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
42 6 0.13
43 39 0.87
ACGTcount: A:0.63, C:0.06, G:0.07, T:0.24
Consensus pattern (42 bp):
AATAAAAATGACAACAATGATAACAATAATAATAATAATAAT
Found at i:15121545 original size:132 final size:132
Alignment explanation
Indices: 15121363--15121611 Score: 383
Period size: 132 Copynumber: 1.9 Consensus size: 132
15121353 TACCTCAAGG
* * *
15121363 AGATAAGGCTAGTGACTTAAACCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCCTCTTCG
1 AGATAAGGCTAGTGACTTAAACCAGCTTCCCTACTACCTCGAGAAAATAAGATTCACCCTCTTCG
*
15121428 ATCTGCTCCACTACTGCTTTGGGAGATAAGATCTACAA-TCTTCAGTCTGCTCCACTGTTGCTTA
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAACT-TTCAGTCTGCTCCACTGTTGCTTA
15121492 GAT
130 GAT
* * * *
15121495 AGATAAGGCTAGTGGCTTAAATCAGCTTCTCTACTACCTCGAGAAAATAAGATTCACCGTCTTCG
1 AGATAAGGCTAGTGACTTAAACCAGCTTCCCTACTACCTCGAGAAAATAAGATTCACCCTCTTCG
* * *
15121560 ATCTGCTTCACTACTGCTTAGGGAGATAAGATTTGCAACTTTCAGTCTGCTC
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAACTTTCAGTCTGCTC
15121612 TACTACCACT
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
132 104 0.99
133 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
AGATAAGGCTAGTGACTTAAACCAGCTTCCCTACTACCTCGAGAAAATAAGATTCACCCTCTTCG
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAACTTTCAGTCTGCTCCACTGTTGCTTAG
AT
Found at i:15130348 original size:13 final size:13
Alignment explanation
Indices: 15130330--15130359 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
15130320 TTCCTGAAAC
15130330 TTTCACTCTACTT
1 TTTCACTCTACTT
15130343 TTTCACTCTACTT
1 TTTCACTCTACTT
15130356 TTTC
1 TTTC
15130360 TGTCACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.30, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTCACTCTACTT
Found at i:15135485 original size:21 final size:21
Alignment explanation
Indices: 15135459--15135501 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
15135449 CTCAGGTGGG
15135459 AAGAATTCTGGAAGTAAGAAT
1 AAGAATTCTGGAAGTAAGAAT
15135480 AAGAATTCTGGAAGTAAGAAT
1 AAGAATTCTGGAAGTAAGAAT
15135501 A
1 A
15135502 TCTCATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.05, G:0.23, T:0.23
Consensus pattern (21 bp):
AAGAATTCTGGAAGTAAGAAT
Found at i:15138172 original size:19 final size:20
Alignment explanation
Indices: 15138135--15138173 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
15138125 CCGGCCACAT
15138135 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
15138155 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
15138174 AAAAATAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:15140695 original size:253 final size:253
Alignment explanation
Indices: 15140247--15140715 Score: 893
Period size: 253 Copynumber: 1.9 Consensus size: 253
15140237 CCTTAATAAG
* **
15140247 TACACAGCCTTTTATTGACATTTAGCATAGTGGAAAATTTGGAAATAACCATAAAATCTGTCATT
1 TACACAGCCTTTTATTGACATTTAGCATAGTGGAAAATTTGGAAATAAACATAAAATCTACCATT
*
15140312 AAGGAGCAAAAAAATTAGTTTGATTTAAAAATTAAGTCAAATCAGATACTGTCTATAAATAAGTA
66 AAGGAGCAAAAAAATTAGTTTGATTTAAAAATTAAGTCAAATAAGATACTGTCTATAAATAAGTA
15140377 GATTATCTCTGCTGAGGAAAAATAAATTTGTGTTTGGCTTAAAATATTTGCAACCCATTTGGGCC
131 GATTATCTCTGCTGAGGAAAAATAAATTTGTGTTTGGCTTAAAATATTTGCAACCCATTTGGGCC
*
15140442 CGATCGATTTGAACATTTCACTTATCAATACCCTTAATAAGTAGAAAATTCTACAGAA
196 CGATCGATTTAAACATTTCACTTATCAATACCCTTAATAAGTAGAAAATTCTACAGAA
15140500 TACACAGCCTTTTATTGACATTTAGCATAGTGGAAAATTTGGAAATAAACATAAAATCTACCATT
1 TACACAGCCTTTTATTGACATTTAGCATAGTGGAAAATTTGGAAATAAACATAAAATCTACCATT
15140565 AAGGAGCAAAAAAATTAGTTTGATTTAAAAATTAAGTCAAATAAGATACTGTCTATAAATAAGTA
66 AAGGAGCAAAAAAATTAGTTTGATTTAAAAATTAAGTCAAATAAGATACTGTCTATAAATAAGTA
15140630 GATTATCTCTGCTGAGGAAAAATAAATTTGTGTTTGGCTTAAAATATTTGCAACCCATTTGGGCC
131 GATTATCTCTGCTGAGGAAAAATAAATTTGTGTTTGGCTTAAAATATTTGCAACCCATTTGGGCC
15140695 CGATCGATTTAAACATTTCAC
196 CGATCGATTTAAACATTTCAC
15140716 GTTGCCTGCA
Statistics
Matches: 211, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
253 211 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (253 bp):
TACACAGCCTTTTATTGACATTTAGCATAGTGGAAAATTTGGAAATAAACATAAAATCTACCATT
AAGGAGCAAAAAAATTAGTTTGATTTAAAAATTAAGTCAAATAAGATACTGTCTATAAATAAGTA
GATTATCTCTGCTGAGGAAAAATAAATTTGTGTTTGGCTTAAAATATTTGCAACCCATTTGGGCC
CGATCGATTTAAACATTTCACTTATCAATACCCTTAATAAGTAGAAAATTCTACAGAA
Found at i:15142214 original size:40 final size:39
Alignment explanation
Indices: 15142165--15142370 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
15142155 TCTTCGGAAT
* *
15142165 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** * * * *
15142204 TTAACCCGGATTTGGTAGCTTGTACAAATGCCTTCGGATC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
15142244 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
15142284 TTAGCCCGGATATAACAACTCGCACGAATACCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
15142324 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
15142364 TTAGCCC
1 TTAGCCC
15142371 TGGTATCATT
Statistics
Matches: 137, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 131 0.96
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:15147296 original size:31 final size:31
Alignment explanation
Indices: 15147260--15147323 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
15147250 ATCATCCACA
15147260 ATCATAATCAAACATTTTCATAAAGTCTCTT
1 ATCATAATCAAACATTTTCATAAAGTCTCTT
15147291 ATCATAATCAAACATTTTCATAAAGTCTCTT
1 ATCATAATCAAACATTTTCATAAAGTCTCTT
15147322 AT
1 AT
15147324 ATAGGTCATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.39
Consensus pattern (31 bp):
ATCATAATCAAACATTTTCATAAAGTCTCTT
Found at i:15148595 original size:42 final size:43
Alignment explanation
Indices: 15148527--15148667 Score: 144
Period size: 42 Copynumber: 3.3 Consensus size: 43
15148517 TCCTAGACGT
* * *
15148527 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAATAG
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAATAG
* *
15148570 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGATAT
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAATAG
* * ** *
15148612 GGTCTTACACATAAATCATAA-GTCGATGCCAACATCCCAAA-CG
1 GGTCTTACAC-GAAATCA-AATATCGATGCCAATGTCCCAAATAG
15148655 TGGTCTTACACGA
1 -GGTCTTACACGA
15148668 GAACACATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
42 28 0.35
43 26 0.32
44 27 0.33
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAAATAG
Found at i:15148650 original size:44 final size:42
Alignment explanation
Indices: 15148526--15148667 Score: 135
Period size: 44 Copynumber: 3.3 Consensus size: 42
15148516 GTCCTAGACG
* * *
15148526 TGGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAAATA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAAC-ATCCCAAATA
* ** *
15148569 GGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGATA
1 TGGTCTTACACGAAATCAAATACGATGCCAACATCCCAAATA
* **
15148611 TGGTCTTACACATAAATCATAAGT-CGATGCCAACATCCCAAACG
1 TGGTCTTACAC-GAAATCA-AA-TACGATGCCAACATCCCAAATA
15148655 TGGTCTTACACGA
1 TGGTCTTACACGA
15148668 GAACACATAT
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
42 26 0.32
43 27 0.33
44 28 0.34
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATACGATGCCAACATCCCAAATA
Found at i:15153246 original size:26 final size:26
Alignment explanation
Indices: 15153210--15153319 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
15153200 CATGTAATTC
15153210 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
15153236 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
15153262 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
15153288 TTGTCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
15153314 TTATCA
1 TTATCA
15153320 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:15159835 original size:26 final size:26
Alignment explanation
Indices: 15159799--15159907 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
15159789 CATGAAATTC
15159799 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
15159825 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
15159851 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
15159877 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
15159902 TTATCA
1 TTATCA
15159908 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 21 0.27
26 57 0.73
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:15160582 original size:18 final size:16
Alignment explanation
Indices: 15160544--15160582 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
15160534 TGGATGAAAC
15160544 AATTAGTTTTTAATTT
1 AATTAGTTTTTAATTT
*
15160560 GATTAGTTTATTCAATTT
1 AATTAGTTT-TT-AATTT
15160578 AATTA
1 AATTA
15160583 AATAAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 8 0.42
17 2 0.11
18 9 0.47
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (16 bp):
AATTAGTTTTTAATTT
Found at i:15160770 original size:22 final size:22
Alignment explanation
Indices: 15160731--15160787 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
15160721 ATTTTTCTTT
* * *
15160731 TTTTTTTTCTTCTCCTTTCCCC
1 TTTTTTTTATTTTCCTTTCCCA
* *
15160753 TTTTTTTTATTTTTCTTTCTCA
1 TTTTTTTTATTTTCCTTTCCCA
*
15160775 TTTTCTTTATTTT
1 TTTTTTTTATTTT
15160788 ATATTCTTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTTTTTATTTTCCTTTCCCA
Found at i:15167113 original size:17 final size:18
Alignment explanation
Indices: 15167093--15167126 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15167083 CAATTCATAA
*
15167093 ATTATTCATAC-ATAAAC
1 ATTAATCATACAATAAAC
15167110 ATTAATCATACAATAAA
1 ATTAATCATACAATAAA
15167127 TCAATTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (18 bp):
ATTAATCATACAATAAAC
Found at i:15168770 original size:17 final size:17
Alignment explanation
Indices: 15168750--15168785 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15168740 CAACTTTCTG
*
15168750 TTTGTTTTTTTCTATCT
1 TTTGTTTCTTTCTATCT
*
15168767 TTTGTTTCTTTCTTTCT
1 TTTGTTTCTTTCTATCT
15168784 TT
1 TT
15168786 ATTTTGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.06, T:0.78
Consensus pattern (17 bp):
TTTGTTTCTTTCTATCT
Found at i:15168772 original size:21 final size:21
Alignment explanation
Indices: 15168743--15168794 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
15168733 TTCGTTTCAA
* *
15168743 CTTTCTGTTTGTTTTTTTCTAT
1 CTTT-TGTTTCTTTCTTTCTAT
*
15168765 CTTTTGTTTCTTTCTTTCTTT
1 CTTTTGTTTCTTTCTTTCTAT
*
15168786 ATTTTGTTT
1 CTTTTGTTT
15168795 TGTGTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.04, C:0.13, G:0.08, T:0.75
Consensus pattern (21 bp):
CTTTTGTTTCTTTCTTTCTAT
Found at i:15168813 original size:8 final size:8
Alignment explanation
Indices: 15168800--15168834 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
15168790 TGTTTTGTGT
15168800 TTATTATA
1 TTATTATA
15168808 TTATTATA
1 TTATTATA
15168816 TTATTAT-
1 TTATTATA
15168823 TATATTATA
1 T-TATTATA
15168832 TTA
1 TTA
15168835 AAATAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 1 0.04
8 23 0.92
9 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TTATTATA
Found at i:15168820 original size:11 final size:11
Alignment explanation
Indices: 15168806--15168834 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
15168796 GTGTTTATTA
15168806 TATTATTATAT
1 TATTATTATAT
15168817 TATTATTATAT
1 TATTATTATAT
15168828 TA-TATTA
1 TATTATTA
15168835 AAATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TATTATTATAT
Found at i:15168855 original size:15 final size:15
Alignment explanation
Indices: 15168835--15168878 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15168825 TATTATATTA
*
15168835 AAATAATAATTACTT
1 AAATAATAATTACAT
* *
15168850 AAATAATAAGTAAAT
1 AAATAATAATTACAT
*
15168865 ATATAATAATTACA
1 AAATAATAATTACA
15168879 AATATATGTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (15 bp):
AAATAATAATTACAT
Found at i:15169678 original size:45 final size:45
Alignment explanation
Indices: 15169618--15169704 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
15169608 GTCTTTCAGC
* * *
15169618 TATCATGATGCCATAGCGTCTTTTAATTATAGTCTTACTCATCCT
1 TATCATAATGCCATAGCATCTTTCAATTATAGTCTTACTCATCCT
* *
15169663 TATCATAATGTCATAGCATCTTTCAATTATGGTCTTACTCAT
1 TATCATAATGCCATAGCATCTTTCAATTATAGTCTTACTCAT
15169705 TTTAGGCGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (45 bp):
TATCATAATGCCATAGCATCTTTCAATTATAGTCTTACTCATCCT
Found at i:15170716 original size:15 final size:15
Alignment explanation
Indices: 15170696--15170728 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
15170686 ACTCCATTTT
15170696 ATTTATATTAGGATA
1 ATTTATATTAGGATA
15170711 ATTTATATTAGGATA
1 ATTTATATTAGGATA
15170726 ATT
1 ATT
15170729 ATTAGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (15 bp):
ATTTATATTAGGATA
Found at i:15173998 original size:42 final size:42
Alignment explanation
Indices: 15173950--15174033 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
15173940 TAGACACATG
15173950 ACATGAGGAAGGCCCAAGGCCCAATAGAGCATATAGATTATC
1 ACATGAGGAAGGCCCAAGGCCCAATAGAGCATATAGATTATC
15173992 ACATGAGGAAGGCCCAAGGCCCAATAGAGCATATAGATTATC
1 ACATGAGGAAGGCCCAAGGCCCAATAGAGCATATAGATTATC
15174034 TTTTTTTGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (42 bp):
ACATGAGGAAGGCCCAAGGCCCAATAGAGCATATAGATTATC
Found at i:15176289 original size:4 final size:4
Alignment explanation
Indices: 15176280--15176396 Score: 225
Period size: 4 Copynumber: 29.2 Consensus size: 4
15176270 ATCCTTGCAT
*
15176280 GATA GATA GATA GATA GATA GATA GATA AATA GATA GATA GATA GATA
1 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
15176328 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
1 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
15176376 GATA GATA GATA GATA GATA G
1 GATA GATA GATA GATA GATA G
15176397 CCACAAGGGT
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 111 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
GATA
Found at i:15180866 original size:3 final size:3
Alignment explanation
Indices: 15180858--15181503 Score: 291
Period size: 3 Copynumber: 217.7 Consensus size: 3
15180848 ATAATTTAAA
15180858 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * *
15180906 AAT AAT AAT AAT -AT GTT GAT AAT AAT AAAT AAT AA- AAT GAAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT AAT
* * * * * *
15180951 AAT AAT AGT AAT AAT ATT AAC AAT AGT AAT AAT AAC GAT AAT -AT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * * *
15180999 ACT AAT ATAT ACAT GAAA AAT AAT AAT AAT AAC AGT AAT AAT AAT AAT
1 AAT AAT A-AT A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
15181047 AAT AAC AAT ACATT AAT GAT AAT AAT -AT ACGTT AAT AAT GAT AAT AAT
1 AAT AAT AAT A-A-T AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AAT
* * ** * * *
15181095 AAT ATGT AA- AA- AAG AGG AAT AAT TAT -AG AAT AAT AAG AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * * * *
15181138 AAT ACT -AT GTT AAT AAG AAT AAT AGT AGT AGT AAT AAAT AA- AAGGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA--T
* * * * *
15181184 AAT AGT AAT AAA AAT AAA AAT AAT AGT AAT AAT GAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * * * * * * * *
15181232 AGT AAT AA- AGC AGAG AA- AA- AAA AAC AA- CAT AAC GAT AAG AAC
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
15181274 AAT AAT AAT TAT TAT AAT AGT AAT AAT -AT AA- AATT AAT GAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* * * * *
15181317 TAT AAT -AT AAT ACT AAT AAT AAG CA- AAT AAGT -AT AAA AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
* * * * * * *
15181359 AAT -AT AAC CAT AGT AAT AAT AGT -AT AGT -AT AAT AAT AAT AGT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
15181404 AAC AAT AAT GAT AAT -AT AAC AAT AAT AGT AAT -AT AAC AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
15181450 AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AGT -AT AAT AAAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT
15181496 AAT AAT AA
1 AAT AAT AA
15181504 AGCAGTAAAA
Statistics
Matches: 482, Mismatches: 120, Indels: 82
0.70 0.18 0.12
Matches are distributed among these distances:
2 43 0.09
3 400 0.83
4 32 0.07
5 7 0.01
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:15181309 original size:22 final size:22
Alignment explanation
Indices: 15181287--15181337 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
15181277 AATAATTATT
15181287 ATAATAGTAATAATATAAAATTA
1 ATAATA-TAATAATATAAAATTA
* * * *
15181310 ATGATATTATAATATAATACTA
1 ATAATATAATAATATAAAATTA
15181332 ATAATA
1 ATAATA
15181338 AGCAAATAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (22 bp):
ATAATATAATAATATAAAATTA
Found at i:15184854 original size:67 final size:67
Alignment explanation
Indices: 15184681--15184857 Score: 191
Period size: 67 Copynumber: 2.6 Consensus size: 67
15184671 ACTGTCCCGA
* * * * * *
15184681 CAGACTTTATTAGTTGCCATAGTCGAGCT-AGGTTCTTACACCTTAAACCCTATGTTTAATGTCC
1 CAGACTCTATTGGTTGCCATAGTCGAGCTAAGGTT-TTACACATTAAACCCCATATTTAATATCC
15184745 TAG
65 TAG
* * * *
15184748 CAGACTCTATTGGTTGCCATAGCCGAGCTATA-ATCTTACACATTATACCCCATATTTAATATCC
1 CAGACTCTATTGGTTGCCATAGTCGAGCTA-AGGTTTTACACATTAAACCCCATATTTAATATCC
15184812 TAG
65 TAG
*
15184815 CAGACTACCTA-T-GTTGCCATAGTCGAACTAAGGTTTTACACAT
1 CAGACT--CTATTGGTTGCCATAGTCGAGCTAAGGTTTTACACAT
15184858 GTAACTTCTT
Statistics
Matches: 91, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
66 1 0.01
67 84 0.92
68 2 0.02
69 4 0.04
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (67 bp):
CAGACTCTATTGGTTGCCATAGTCGAGCTAAGGTTTTACACATTAAACCCCATATTTAATATCCT
AG
Found at i:15190239 original size:2 final size:2
Alignment explanation
Indices: 15190229--15190259 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
15190219 TATTGACATA
15190229 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15190260 TAAAATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15190366 original size:21 final size:19
Alignment explanation
Indices: 15190332--15190393 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
15190322 TAAATTATGT
15190332 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
15190354 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
15190376 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
15190394 GTATTTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:15190460 original size:14 final size:14
Alignment explanation
Indices: 15190430--15190468 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
15190420 AATAATTACT
15190430 ATAAAAAATA-A-A
1 ATAAAAAATATATA
*
15190442 ATAAATAATATATA
1 ATAAAAAATATATA
15190456 ATAAAAAATATAT
1 ATAAAAAATATAT
15190469 GAGAAAGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 9 0.39
13 1 0.04
14 13 0.57
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
ATAAAAAATATATA
Found at i:15190609 original size:19 final size:18
Alignment explanation
Indices: 15190585--15190627 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
15190575 AGAAACATAG
*
15190585 TATATAAAAATATATAACA
1 TATATAAAAATATA-AAAA
*
15190604 TATATAAAAATTTAAAAA
1 TATATAAAAATATAAAAA
15190622 TATATA
1 TATATA
15190628 TGTTGTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
TATATAAAAATATAAAAA
Found at i:15190872 original size:20 final size:20
Alignment explanation
Indices: 15190838--15190876 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
15190828 ATTTGCCATT
15190838 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAA-AATAA
*
15190859 TACAATTTTA-TAAAAATA
1 TACAAATTTAGTAAAAATA
15190877 TATAAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (20 bp):
TACAAATTTAGTAAAAATAA
Found at i:15190901 original size:14 final size:14
Alignment explanation
Indices: 15190871--15190945 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
15190861 CAATTTTATA
15190871 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
15190883 GAAATATATAAAAT
1 AAAATATATAAAAT
*
15190897 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
15190911 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
*
15190927 AAAATATATGATAAT
1 AAAATATAT-AAAAT
15190942 AAAA
1 AAAA
15190946 AATAATGGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.17
13 3 0.06
14 16 0.33
15 13 0.27
16 8 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:15191011 original size:22 final size:22
Alignment explanation
Indices: 15190965--15191005 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
15190955 TAATAATAGT
15190965 AATATATAATAATATTTAAAAA
1 AATATATAATAATATTTAAAAA
*
15190987 AATATATAA-AGTATTTAAA
1 AATATATAATAATATTTAAA
15191006 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
AATATATAATAATATTTAAAAA
Found at i:15192937 original size:206 final size:205
Alignment explanation
Indices: 15192580--15193337 Score: 1176
Period size: 206 Copynumber: 3.7 Consensus size: 205
15192570 AATCTGCTTC
* * *
15192580 TTTGATTTGTTCTCTGACAATAGAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
1 TTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
* * * * * *
15192645 CAAAAACCAAATTAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATACCAAACCATCTTG
66 TAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
* *
15192710 GATCTGCTTCAGTCTAATCATCTGAAGGTTAAATCTGCTATGTGTCTGCCCTTCGTCGAATATGG
131 GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
15192775 AGACGCCAAA
196 AGACGCCAAA
* *
15192785 TTTAGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 TTT-GATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
15192850 GTAAAAGCTAAATCAGCTATGAT-TTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
65 GTAAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
15192914 TGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
129 TGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
15192979 GGAGACGCCAAA
194 GGAGACGCCAAA
* * * *
15192991 CTTTGATCTGCTCTCTAACAATACAGAGATGCTAAATTATCTTAGATTTGCTTCATCGTAAGCAC
1 -TTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
15193056 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTT
65 GTAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
*
15193121 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATG
130 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
15193186 GAGACTCCAAA
195 GAGACGCCAAA
* * * * *
15193197 CTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCGTCTTAGATTTACTTTATCGTAAGCAC
1 -TTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
15193262 GTGAAAGCTAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCAGAAGGATGCCAAATCATCTT
65 GTAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
15193327 GGATCTTGCTT
130 GGATC-TGCTT
15193338 TAGCCAGATC
Statistics
Matches: 514, Mismatches: 34, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
205 4 0.01
206 501 0.97
207 9 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (205 bp):
TTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACG
TAAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTG
GATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGG
AGACGCCAAA
Found at i:15205215 original size:21 final size:19
Alignment explanation
Indices: 15205181--15205242 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
15205171 TAAGTTATGT
15205181 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
15205203 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
15205225 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
15205243 GTATTTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:15205302 original size:21 final size:22
Alignment explanation
Indices: 15205268--15205315 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 22
15205258 AAATATGGTA
*
15205268 AAATAATTAGTATAAAAAACAAAAT
1 AAATAA-TA-TATAATAAA-AAAAT
15205293 AAATAATATATAATAAAAAAAT
1 AAATAATATATAATAAAAAAAT
15205315 A
1 A
15205316 TATGAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 6 0.27
23 8 0.36
24 2 0.09
25 6 0.27
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (22 bp):
AAATAATATATAATAAAAAAAT
Found at i:15205373 original size:18 final size:18
Alignment explanation
Indices: 15205350--15205390 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
15205340 GAATATTGAA
15205350 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
15205368 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
15205386 AAATA
1 TAATA
15205391 TAATATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:15205734 original size:19 final size:21
Alignment explanation
Indices: 15205707--15205745 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
15205697 CATTTACAAA
*
15205707 TTTAGTAAATAATA-ATAAAT
1 TTTAGTAAAAAATATATAAAT
15205727 TTTA-TAAAAAATATATAAA
1 TTTAGTAAAAAATATATAAA
15205746 GAAATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
TTTAGTAAAAAATATATAAAT
Found at i:15205744 original size:26 final size:28
Alignment explanation
Indices: 15205715--15205807 Score: 88
Period size: 30 Copynumber: 3.4 Consensus size: 28
15205705 AATTTAGTAA
15205715 ATAATAATAAAT-TTTATAA-AAAATAT
1 ATAATAATAAATATTTATAATAAAATAT
* * *
15205741 AT-A-AAGAAATATATAAAATAAAATAT
1 ATAATAATAAATATTTATAATAAAATAT
15205767 ATAAT-ATAATATAATTTATAGATAAAATAT
1 ATAATAATAA-AT-ATTTATA-ATAAAATAT
*
15205797 ATGATAATAAA
1 ATAATAATAAA
15205808 AAATAATGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
24 6 0.12
25 6 0.12
26 11 0.21
27 4 0.08
28 2 0.04
29 5 0.10
30 14 0.27
31 4 0.08
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (28 bp):
ATAATAATAAATATTTATAATAAAATAT
Found at i:15205750 original size:12 final size:11
Alignment explanation
Indices: 15205729--15205758 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
15205719 TAATAAATTT
15205729 TATAAAAAATA
1 TATAAAAAATA
15205740 TATAAAGAAATA
1 TATAAA-AAATA
15205752 TATAAAA
1 TATAAAA
15205759 TAAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (11 bp):
TATAAAAAATA
Found at i:15205764 original size:14 final size:14
Alignment explanation
Indices: 15205734--15205808 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
15205724 AATTTTATAA
15205734 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
15205746 GAAATATATAAAAT
1 AAAATATATAAAAT
*
15205760 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
15205774 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
*
15205790 AAAATATATGATAAT
1 AAAATATAT-AAAAT
15205805 AAAA
1 AAAA
15205809 AATAATGGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.17
13 3 0.06
14 16 0.33
15 13 0.27
16 8 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:15205812 original size:17 final size:17
Alignment explanation
Indices: 15205790--15205823 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
15205780 ATTTATAGAT
15205790 AAAATATAT-GATAATAA
1 AAAATA-ATGGATAATAA
15205807 AAAATAATGGATAATAA
1 AAAATAATGGATAATAA
15205824 TAGTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAATAATGGATAATAA
Found at i:15209992 original size:20 final size:19
Alignment explanation
Indices: 15209967--15210004 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
15209957 AATTACTTAT
15209967 TAATTATAATTAGTAATAAA
1 TAATTATAATTA-TAATAAA
15209987 TAATTATAATTATAATAA
1 TAATTATAATTATAATAA
15210005 TATGAGACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TAATTATAATTATAATAAA
Found at i:15215050 original size:20 final size:20
Alignment explanation
Indices: 15215025--15215063 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
15215015 AGTAGGGAGA
15215025 AAGTATAATAAATAATACGG
1 AAGTATAATAAATAATACGG
15215045 AAGTATAATAAATAATACG
1 AAGTATAATAAATAATACG
15215064 CAAGAGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.05, G:0.13, T:0.26
Consensus pattern (20 bp):
AAGTATAATAAATAATACGG
Found at i:15216700 original size:32 final size:32
Alignment explanation
Indices: 15216664--15216733 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
15216654 GGTTTTTTTT
* * * *
15216664 TTTGTTATTTATTGTTTGAATGTGTTGGGTTA
1 TTTGTTATTTATTATTTGAATGTGCTGAGATA
* *
15216696 TTTGTTATTTGTTATTTGATTGTGCTGAGATA
1 TTTGTTATTTATTATTTGAATGTGCTGAGATA
15216728 TTTGTT
1 TTTGTT
15216734 TTTTTTTTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.16, C:0.01, G:0.23, T:0.60
Consensus pattern (32 bp):
TTTGTTATTTATTATTTGAATGTGCTGAGATA
Found at i:15217444 original size:26 final size:26
Alignment explanation
Indices: 15217407--15217541 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
15217397 TGATACAAAT
*
15217407 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15217433 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15217458 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15217484 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15217510 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15217536 TGATAA
1 TGATAA
15217542 GAATTTCATG
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15217462 original size:51 final size:52
Alignment explanation
Indices: 15217407--15217541 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
15217397 TGATACAAAT
15217407 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
15217458 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
15217510 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
15217542 GAATTTCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 47 0.58
52 34 0.42
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:15219558 original size:137 final size:137
Alignment explanation
Indices: 15219312--15219735 Score: 812
Period size: 137 Copynumber: 3.1 Consensus size: 137
15219302 TGAGTAGTCT
15219312 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15219377 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15219442 ACTGTTA
131 ACTGTTA
15219449 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
15219514 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGACCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15219579 ACTGTTA
131 ACTGTTA
15219586 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15219651 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15219716 ACTGTTA
131 ACTGTTA
**
15219723 CCTGAATGGGCTT
1 CCCAAATGGGCTT
15219736 AGGCCCAATG
Statistics
Matches: 281, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 281 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:15224795 original size:26 final size:26
Alignment explanation
Indices: 15224708--15224841 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
15224698 TGATACAAAT
15224708 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15224734 TGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
15224758 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15224784 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15224810 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15224836 TGATAA
1 TGATAA
15224842 GAATTTCATG
Statistics
Matches: 104, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
24 9 0.09
25 30 0.29
26 65 0.62
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:15227035 original size:137 final size:137
Alignment explanation
Indices: 15226615--15227025 Score: 804
Period size: 137 Copynumber: 3.0 Consensus size: 137
15226605 GAGTAGTCTC
15226615 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15226680 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15226745 ACTGTTA
131 ACTGTTA
*
15226752 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGTCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
15226817 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15226882 ACTGTTA
131 ACTGTTA
15226889 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
15226954 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
15227019 ACTGTTA
131 ACTGTTA
15227026 ACTGAATGGG
Statistics
Matches: 270, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 270 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:15233954 original size:21 final size:20
Alignment explanation
Indices: 15233922--15233970 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 20
15233912 TTCTTCGAAT
*
15233922 TTGTTTACCTATTATTATTA
1 TTGTTTATCTATTATTATTA
15233942 TTCGTTTATCTATTATTATTA
1 TT-GTTTATCTATTATTATTA
15233963 TTGTTTAT
1 TTGTTTAT
15233971 ATTACAGGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.22, C:0.08, G:0.06, T:0.63
Consensus pattern (20 bp):
TTGTTTATCTATTATTATTA
Found at i:15236306 original size:11 final size:10
Alignment explanation
Indices: 15236272--15236322 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
15236262 ATCTTCTCGA
15236272 TTTGG-TCTGT
1 TTTGGCTCT-T
*
15236282 TTTGTCTCTT
1 TTTGGCTCTT
15236292 TTTGGCTCATT
1 TTTGGCTC-TT
*
15236303 TTTGGCTCCT
1 TTTGGCTCTT
*
15236313 TTTGACTCTT
1 TTTGGCTCTT
15236323 GGTGCTCTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
10 21 0.62
11 13 0.38
ACGTcount: A:0.04, C:0.20, G:0.18, T:0.59
Consensus pattern (10 bp):
TTTGGCTCTT
Found at i:15245513 original size:13 final size:13
Alignment explanation
Indices: 15245495--15245520 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15245485 AAGTAATCGT
15245495 ACACGGGCGTGTC
1 ACACGGGCGTGTC
15245508 ACACGGGCGTGTC
1 ACACGGGCGTGTC
15245521 CTTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:15247908 original size:3 final size:3
Alignment explanation
Indices: 15247900--15247964 Score: 112
Period size: 3 Copynumber: 21.0 Consensus size: 3
15247890 ACCATTCTTT
15247900 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
15247946 TTTA TTA TTA TTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA
15247965 GTGCTAGAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 54 0.89
4 7 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15248599 original size:24 final size:24
Alignment explanation
Indices: 15248567--15248615 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
15248557 AATTTATTTA
15248567 TTTATTCTAAATATCAAGTGGTTG
1 TTTATTCTAAATATCAAGTGGTTG
15248591 TTTATTCTAAATATCAAGTGGTTG
1 TTTATTCTAAATATCAAGTGGTTG
15248615 T
1 T
15248616 GTAACACCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.16, T:0.47
Consensus pattern (24 bp):
TTTATTCTAAATATCAAGTGGTTG
Found at i:15249138 original size:31 final size:31
Alignment explanation
Indices: 15249103--15249166 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
15249093 GAAGCTTAGT
15249103 AAGTTCATAGGCATAAAACATAAATCTTACC
1 AAGTTCATAGGCATAAAACATAAATCTTACC
*
15249134 AAGTTCATAGGTATAAAACATAAATCTTACC
1 AAGTTCATAGGCATAAAACATAAATCTTACC
15249165 AA
1 AA
15249167 ATATTTATAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (31 bp):
AAGTTCATAGGCATAAAACATAAATCTTACC
Found at i:15249514 original size:51 final size:51
Alignment explanation
Indices: 15249444--15249556 Score: 199
Period size: 51 Copynumber: 2.2 Consensus size: 51
15249434 TGATCACATG
*
15249444 TATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACT
1 TATCACTTGTCACTGATCAGATAAGTGTAACTAAAACTACCACTTATCACT
*
15249495 TATCACTTGTCACTGATCAGATAAGTGTAACTAAAGCTACCACTTATCACT
1 TATCACTTGTCACTGATCAGATAAGTGTAACTAAAACTACCACTTATCACT
*
15249546 TGTCACTTGTC
1 TATCACTTGTC
15249557 GCTTGTCACT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (51 bp):
TATCACTTGTCACTGATCAGATAAGTGTAACTAAAACTACCACTTATCACT
Found at i:15249551 original size:7 final size:7
Alignment explanation
Indices: 15249535--15249573 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
15249525 CTAAAGCTAC
*
15249535 CACTTAT
1 CACTTGT
15249542 CACTTGT
1 CACTTGT
15249549 CACTTGT
1 CACTTGT
*
15249556 CGCTTGT
1 CACTTGT
*
15249563 CACTTAT
1 CACTTGT
15249570 CACT
1 CACT
15249574 GATCAGATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.18, C:0.31, G:0.10, T:0.41
Consensus pattern (7 bp):
CACTTGT
Found at i:15253618 original size:21 final size:20
Alignment explanation
Indices: 15253593--15253636 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
15253583 CTCTTAACAA
15253593 AAATTATAAAAAAATCAAAAT
1 AAATT-TAAAAAAATCAAAAT
* * *
15253614 AAATTTCAAAAATTGAAAAT
1 AAATTTAAAAAAATCAAAAT
15253634 AAA
1 AAA
15253637 ATAATAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (20 bp):
AAATTTAAAAAAATCAAAAT
Found at i:15253685 original size:3 final size:3
Alignment explanation
Indices: 15253677--15253705 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
15253667 TAAAATAATT
15253677 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
15253706 ATTATTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:15253710 original size:3 final size:3
Alignment explanation
Indices: 15253704--15253753 Score: 91
Period size: 3 Copynumber: 16.3 Consensus size: 3
15253694 CTTCTTCTTC
15253704 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
15253750 TTA T
1 TTA T
15253754 GCTTTAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:15254005 original size:21 final size:21
Alignment explanation
Indices: 15253979--15254019 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
15253969 ACTTTATCTA
*
15253979 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAGGCAAAACTATC
15254000 AAGTTAAAAGGCAAAACTAT
1 AAGTTAAAAGGCAAAACTAT
15254020 GTTCTTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.22
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATC
Found at i:15255927 original size:21 final size:22
Alignment explanation
Indices: 15255903--15255943 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
15255893 ATTCTTACCT
15255903 ATATAT-TTATTATTA-ATATCA
1 ATATATGTT-TTATTATATATCA
15255924 ATATATGTTTTATTATATAT
1 ATATATGTTTTATTATATAT
15255944 ATTTAACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
ATATATGTTTTATTATATATCA
Found at i:15262101 original size:2 final size:2
Alignment explanation
Indices: 15262094--15262140 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
15262084 ATGTGCAAAA
* *
15262094 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15262136 AT AT A
1 AT AT A
15262141 AAATATACAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15262329 original size:20 final size:21
Alignment explanation
Indices: 15262300--15262351 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
15262290 AACTAATGGC
*
15262300 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
15262321 A-ATACACATAATATATATAT
1 ATATACACATAATATATATAT
*
15262341 ATATATACATA
1 ATATACACATA
15262352 TTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:15262887 original size:11 final size:11
Alignment explanation
Indices: 15262873--15262907 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
15262863 AAAAAAAAAA
15262873 GAAGAGAGAGG
1 GAAGAGAGAGG
15262884 GAAGAGAGAGG
1 GAAGAGAGAGG
15262895 G-AGAGAGAAGG
1 GAAGAGAG-AGG
15262906 GA
1 GA
15262908 GGGGAATCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAGG
Found at i:15263021 original size:12 final size:12
Alignment explanation
Indices: 15263004--15263058 Score: 101
Period size: 12 Copynumber: 4.6 Consensus size: 12
15262994 AGGTAAATTT
15263004 TTTTTTTGTATA
1 TTTTTTTGTATA
15263016 TTTTTTTGTATA
1 TTTTTTTGTATA
15263028 TTTTTTTGTATA
1 TTTTTTTGTATA
*
15263040 TCTTTTTGTATA
1 TTTTTTTGTATA
15263052 TTTTTTT
1 TTTTTTT
15263059 TATGTTTTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 41 1.00
ACGTcount: A:0.15, C:0.02, G:0.07, T:0.76
Consensus pattern (12 bp):
TTTTTTTGTATA
Found at i:15263035 original size:24 final size:24
Alignment explanation
Indices: 15263004--15263066 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 24
15262994 AGGTAAATTT
15263004 TTTTTTTGTATATTTTTTTGTATA
1 TTTTTTTGTATATTTTTTTGTATA
*
15263028 TTTTTTTGTATATCTTTTTGTATA
1 TTTTTTTGTATATTTTTTTGTATA
*
15263052 TTTTTTT-TATGTTTT
1 TTTTTTTGTATATTTT
15263067 AATATATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 6 0.17
24 30 0.83
ACGTcount: A:0.14, C:0.02, G:0.08, T:0.76
Consensus pattern (24 bp):
TTTTTTTGTATATTTTTTTGTATA
Found at i:15263483 original size:35 final size:35
Alignment explanation
Indices: 15263443--15263513 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
15263433 GGAGTGTGTG
*
15263443 ATGGTGTTGGTGGCAGACAGCATGGGAGAATGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
*
15263478 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
15263513 A
1 A
15263514 GAGACAAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.10, G:0.46, T:0.18
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
Found at i:15263888 original size:44 final size:45
Alignment explanation
Indices: 15263824--15263923 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 45
15263814 TTGCATCTTC
* * *
15263824 TGATATATGCTTTGTGGCTTCAATCCACTTTAATGTAACTTCA-A
1 TGATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
* ** * *
15263868 TGATATAAGATTTGTAGCTTCGATCTGCTTTACTGTGACTTCAGA
1 TGATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
*
15263913 -AATATAAGATT
1 TGATATAAGATT
15263924 AACAGCTTCA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
44 45 0.98
45 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (45 bp):
TGATATAAGATTTGTAGCTTCAATCCACTTTAATGTAACTTCAGA
Found at i:15264454 original size:72 final size:72
Alignment explanation
Indices: 15264317--15265210 Score: 838
Period size: 72 Copynumber: 11.8 Consensus size: 72
15264307 CATGTGAACC
* * *
15264317 GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAA
15264382 CGTGTCTT
65 CGTGTCTT
**
15264390 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
15264455 GTGTCTT
66 GTGTCTT
*
15264462 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
15264527 GTGTCTT
66 GTGTCTT
* *
15264534 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGACGAACAGAAATTGAAA-AACAGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTAC-----
* * *
15264597 TTGAAAATACCTCAG-CGTGT
60 CT---CA-ACGT--GTC-T-T
* * * *
15264617 GA-GCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAAT
1 GAGGCTCA-ACT-----CACCTCTCGCAATATGAGTTGA--ATTTTGA-AAACAGAAATTGAAAT
*
15264681 TACCTCAACGTGTCCT
57 TACCTCAACGTGTCTT
* *
15264697 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGACGAACAGAAATTGAAA-AACAGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTAC-----
* * * *
15264760 TTGAAAATACGTCAGCGCGT
60 CT---CA-ACGT--G-TCTT
* * *
15264780 GA-GCTGAGACTCAACTCACCTCTCGCAATATGAGTT-AATTTTTTTGATGAACAGAAATTAAAA
1 GAGGCTCA-ACT-----CACCTCTCGCAATATGAGTTGAA---TTTTGA-AAACAGAAATTGAAA
*
15264843 TTACCTCAACGTGTCCT
56 TTACCTCAACGTGTCTT
*
15264860 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAGAA-TACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTGAAA-ACAGAAATTGA-AATTACC
* * *
15264924 TCAGCATGTGAAC-C
61 TCA--ACGTG-TCTT
* * *
15264938 GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCA
15265003 ACGTGTCTT
64 ACGTGTCTT
** *
15265012 GAGGCTCAACTCATTTCTTGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
15265077 GTGTCTT
66 GTGTCTT
*
15265084 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
15265149 GTGTCTT
66 GTGTCTT
* *
15265156 GAGGCTCAACTCACTTCTCGCAATATGAGTTG-ATTTTGACGAACAGAAATTGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAA
15265211 AACAGAAATT
Statistics
Matches: 695, Mismatches: 64, Indels: 125
0.79 0.07 0.14
Matches are distributed among these distances:
71 16 0.02
72 322 0.46
73 31 0.04
74 33 0.05
75 44 0.06
76 44 0.06
77 13 0.02
78 36 0.05
79 3 0.00
80 20 0.03
81 11 0.02
82 12 0.02
83 20 0.03
84 2 0.00
87 2 0.00
88 42 0.06
91 40 0.06
92 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (72 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
GTGTCTT
Found at i:15264592 original size:14 final size:14
Alignment explanation
Indices: 15264575--15264603 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15264565 GATTTTGACG
15264575 AACAGAAATTGAAA
1 AACAGAAATTGAAA
15264589 AACAGAAATTGAAA
1 AACAGAAATTGAAA
15264603 A
1 A
15264604 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:15264702 original size:163 final size:163
Alignment explanation
Indices: 15264429--15265614 Score: 1692
Period size: 163 Copynumber: 7.5 Consensus size: 163
15264419 TTGAATTTTG
* * *
15264429 AAAACAGAAATTGAAATTACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGC-TGAGACTCAACTCACCTCTCGCAATATGAG
* * *
15264491 TTGA--TTTTTGA-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
65 TTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
15264553 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
130 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
15264587 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
15264652 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
66 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
15264717 CAATATGAGTTGATTTTGACGAACAGAAATTGA
131 CAATATGAGTTGATTTTGACGAACAGAAATTGA
* *
15264750 AAAACAGAAATTGAAAATACGTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
*
15264815 TAATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
66 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
**
15264880 CAATATGAGTTGATTTT----------TTTTGA
131 CAATATGAGTTGATTTTGACGAACAGAAATTGA
* * * * * * *
15264903 AAGACAGAAATTGAGAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
* * ** *
15264968 TGATTTTTTTGA-AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTT
66 TGATTTTTTTGATGAACAGAAATT-AAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
*
15265031 GCAATATGAGTTGA-ATT------------TTG-
130 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
* * *
15265051 AAAACAGAAATTGAAATTACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGC-TGAGACTCAACTCACCTCTCGCAATATGAG
* * * *
15265113 TTGA--TTTTTGA-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTC
65 TTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
15265175 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
130 GCAATATGAGTTGATTTTGACGAACAGAAATTGA
15265209 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
15265274 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
66 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
* *
15265339 CAATATGAGTTGATTTTGATGAACATAAATTGA
131 CAATATGAGTTGATTTTGACGAACAGAAATTGA
* *
15265372 AAAACAGAAATTGGAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
15265437 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
66 TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
*
15265502 CAATATGAGTTGATTTTTTTTGATGAACAGAAATTGA
131 CAATATGAGTTGA----TTTTGACGAACAGAAATTGA
** *
15265539 AAAACAGAAATTGAAAATACCTCAGCGCATGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
15265604 TGATTTTTTTG
66 TGATTTTTTTG
15265615 GTAGAATTTG
Statistics
Matches: 942, Mismatches: 53, Indels: 57
0.90 0.05 0.05
Matches are distributed among these distances:
143 3 0.00
144 65 0.07
145 3 0.00
146 32 0.03
148 25 0.03
149 3 0.00
151 2 0.00
152 55 0.06
153 75 0.08
157 3 0.00
158 56 0.06
160 66 0.07
161 2 0.00
162 14 0.01
163 446 0.47
167 92 0.10
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (163 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTGACGAACAGAAATTGA
Found at i:15264755 original size:14 final size:14
Alignment explanation
Indices: 15264738--15264766 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15264728 GATTTTGACG
15264738 AACAGAAATTGAAA
1 AACAGAAATTGAAA
15264752 AACAGAAATTGAAA
1 AACAGAAATTGAAA
15264766 A
1 A
15264767 TACGTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:15265214 original size:14 final size:14
Alignment explanation
Indices: 15265197--15265225 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15265187 GATTTTGACG
15265197 AACAGAAATTGAAA
1 AACAGAAATTGAAA
15265211 AACAGAAATTGAAA
1 AACAGAAATTGAAA
15265225 A
1 A
15265226 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:15265454 original size:622 final size:621
Alignment explanation
Indices: 15264233--15265538 Score: 2461
Period size: 622 Copynumber: 2.1 Consensus size: 621
15264223 AGTGTGTGAT
* *
15264233 CTGAAGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTGAAAGACAGAAATTGAGA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTTTGAAAGACAGAAATTGAGA
15264298 ATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACA
62 ATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACA
15264363 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
127 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
15264428 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
192 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
15264493 GATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
257 GATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
15264558 ATGAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTG
322 ATGAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTG
15264623 AGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCA
387 AGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCA
15264688 ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAA
452 ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAA
*
15264753 ACAGAAATTGAAAATACGTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTAA
517 ACAGAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTAA
15264818 TTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
582 TTTTTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
15264858 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAGAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAGAATAC
15264923 CTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAA
66 CTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTGAAAACAGAA
*
15264988 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGAATTTTGAA
130 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAA
15265053 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
195 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
15265118 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATG
260 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
15265183 AGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGA
325 AGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGA
15265248 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACG
390 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACG
* *
15265313 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGATGAACATAAATTGAAAAACA
455 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAACA
* *
15265378 GAAATTGGAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTT
520 GAAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTAATTT
15265443 TTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
585 TTTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
*
15265480 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTG-ATGAACAGAAATTGA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAG-ACAGAAATTGA
15265539 AAAACAGAAA
Statistics
Matches: 669, Mismatches: 10, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
621 80 0.12
622 556 0.83
625 33 0.05
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (621 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAGAATAC
CTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAA
TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
ACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCTGAGAC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAACAGAAATTAAAATTACCTCAACGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAACAG
AAATTGAAAATACCTCAGCGCGTGAGCTGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTT
TTTGATGAACAGAAATTAAAATTACCTCAACGTGTC
Found at i:15265544 original size:14 final size:14
Alignment explanation
Indices: 15265527--15265555 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15265517 TTTTTTGATG
15265527 AACAGAAATTGAAA
1 AACAGAAATTGAAA
15265541 AACAGAAATTGAAA
1 AACAGAAATTGAAA
15265555 A
1 A
15265556 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:15277893 original size:2 final size:2
Alignment explanation
Indices: 15277888--15277954 Score: 77
Period size: 2 Copynumber: 35.0 Consensus size: 2
15277878 AACTAATGGC
* * *
15277888 AT AT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT A- AT AC AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
15277928 AT A- AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15277955 TAGAAATGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
1 3 0.05
2 53 0.95
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:15278490 original size:11 final size:11
Alignment explanation
Indices: 15278474--15278507 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
15278464 GAAAAAAAAA
15278474 AAGAGAGAGGG
1 AAGAGAGAGGG
15278485 AAGAGAGAGGG
1 AAGAGAGAGGG
15278496 -AGAGAGAAGGG
1 AAGAGAG-AGGG
15278507 A
1 A
15278508 GGGGAATCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.29
11 15 0.71
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (11 bp):
AAGAGAGAGGG
Found at i:15278614 original size:12 final size:12
Alignment explanation
Indices: 15278597--15278650 Score: 92
Period size: 12 Copynumber: 4.6 Consensus size: 12
15278587 AATTTTTTTT
15278597 TTTTTTTGTATA
1 TTTTTTTGTATA
15278609 -TTTTTTGTATA
1 TTTTTTTGTATA
15278620 TTTTTTTGTATA
1 TTTTTTTGTATA
*
15278632 TCTTTTTGTATA
1 TTTTTTTGTATA
15278644 TTTTTTT
1 TTTTTTT
15278651 TATGTTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
11 11 0.28
12 28 0.72
ACGTcount: A:0.15, C:0.02, G:0.07, T:0.76
Consensus pattern (12 bp):
TTTTTTTGTATA
Found at i:15278637 original size:24 final size:23
Alignment explanation
Indices: 15278597--15278658 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
15278587 AATTTTTTTT
15278597 TTTTTTTGTATATTTTTTGTATA
1 TTTTTTTGTATATTTTTTGTATA
15278620 TTTTTTTGTATATCTTTTTGTATA
1 TTTTTTTGTATAT-TTTTTGTATA
*
15278644 TTTTTTT-TATGTTTT
1 TTTTTTTGTATATTTT
15278659 AATATATATA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
22 3 0.08
23 17 0.46
24 17 0.46
ACGTcount: A:0.15, C:0.02, G:0.08, T:0.76
Consensus pattern (23 bp):
TTTTTTTGTATATTTTTTGTATA
Found at i:15278667 original size:35 final size:35
Alignment explanation
Indices: 15278599--15278667 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
15278589 TTTTTTTTTT
** *
15278599 TTTTTGTATATTTTTTGTATATTTTTTTGTATATC
1 TTTTTGTATATTTTTTGTATATTTTAATATATATC
* *
15278634 TTTTTGTATATTTTTTTTATGTTTTAATATATAT
1 TTTTTGTATATTTTTTGTATATTTTAATATATAT
15278668 ATAGGTAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.20, C:0.01, G:0.07, T:0.71
Consensus pattern (35 bp):
TTTTTGTATATTTTTTGTATATTTTAATATATATC
Found at i:15279080 original size:35 final size:35
Alignment explanation
Indices: 15279034--15279104 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
15279024 GGAGTGTGTG
*
15279034 ATGGTGTTGGTGGCAGACAGCATGGGAGAATGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
*
15279069 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
15279104 A
1 A
15279105 GAGACAAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.10, G:0.46, T:0.18
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
Found at i:15280663 original size:9 final size:9
Alignment explanation
Indices: 15280651--15280734 Score: 59
Period size: 9 Copynumber: 9.4 Consensus size: 9
15280641 TATTTTTAAA
15280651 ATTTAAAAT
1 ATTTAAAAT
15280660 ATTTAAAAT
1 ATTTAAAAT
*
15280669 ATTT--ATT
1 ATTTAAAAT
*
15280676 TTTTAAAA-
1 ATTTAAAAT
*
15280684 ATTTAAAAA
1 ATTTAAAAT
15280693 ATTCTAAAAAT
1 ATT-T-AAAAT
*
15280704 ATTTAAAGAA
1 ATTTAAA-AT
*
15280714 AATTAAAAT
1 ATTTAAAAT
*
15280723 TTTTAAAA-
1 ATTTAAAAT
15280731 ATTT
1 ATTT
15280735 CTAAAATAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
7 5 0.09
8 10 0.17
9 27 0.47
10 9 0.16
11 7 0.12
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (9 bp):
ATTTAAAAT
Found at i:15280685 original size:63 final size:62
Alignment explanation
Indices: 15280617--15280734 Score: 150
Period size: 63 Copynumber: 1.9 Consensus size: 62
15280607 CTCTCTCAGC
* ** *
15280617 AAAAATTATAAAATAATTC-AAAATTATTTTTA-AAATTTAAAATATTTAAAATATTTATTTTTT
1 AAAAATT-TAAAA-AATTCTAAAAATATTTAAAGAAAATTAAAATATTTAAAA-ATTTATTTTTT
*
15280680 AAAAATTTAAAAAATTCTAAAAATATTTAAAGAAAATTAAAATTTTTAAAAATTT
1 AAAAATTTAAAAAATTCTAAAAATATTTAAAGAAAATTAAAATATTTAAAAATTT
15280735 CTAAAATAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
61 5 0.10
62 19 0.40
63 24 0.50
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (62 bp):
AAAAATTTAAAAAATTCTAAAAATATTTAAAGAAAATTAAAATATTTAAAAATTTATTTTTT
Found at i:15280700 original size:10 final size:9
Alignment explanation
Indices: 15280680--15280731 Score: 50
Period size: 10 Copynumber: 5.4 Consensus size: 9
15280670 TTTATTTTTT
15280680 AAAAATTTA
1 AAAAATTTA
15280689 AAAAATTCTA
1 AAAAATT-TA
15280699 AAAATATTTA
1 AAAA-ATTTA
*
15280709 AAGAAAATTA
1 AA-AAATTTA
**
15280719 AAATTTTTA
1 AAAAATTTA
15280728 AAAA
1 AAAA
15280732 TTTCTAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
9 14 0.40
10 16 0.46
11 5 0.14
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTTA
Found at i:15286327 original size:40 final size:41
Alignment explanation
Indices: 15286264--15286345 Score: 157
Period size: 40 Copynumber: 2.0 Consensus size: 41
15286254 AAAACTTTAA
15286264 TACTTATACTTTTTTATATATATTTAACTAACAAACATACT
1 TACTTATACTTTTTTATATATATTTAACTAACAAACATACT
15286305 TACTTATAC-TTTTTATATATATTTAACTAACAAACATACT
1 TACTTATACTTTTTTATATATATTTAACTAACAAACATACT
15286345 T
1 T
15286346 TATAAAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 32 0.78
41 9 0.22
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (41 bp):
TACTTATACTTTTTTATATATATTTAACTAACAAACATACT
Found at i:15286566 original size:16 final size:16
Alignment explanation
Indices: 15286540--15286583 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
15286530 GTCAAATTTG
15286540 AAGAATATAAAATAAAA
1 AAGAAT-TAAAATAAAA
15286557 AAGAATT-AAATAAAA
1 AAGAATTAAAATAAAA
* *
15286572 AATAAATAAAAT
1 AAGAATTAAAAT
15286584 TGTCTTCGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 13 0.54
16 5 0.21
17 6 0.25
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (16 bp):
AAGAATTAAAATAAAA
Found at i:15290708 original size:88 final size:85
Alignment explanation
Indices: 15290592--15291023 Score: 291
Period size: 88 Copynumber: 5.0 Consensus size: 85
15290582 GACTCTCTAA
* * *
15290592 AAACAGACATTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCT
1 AAACAGA-ATTAAAAGCAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCT
15290657 CGCAATATGAGTTGATTTTTTG
64 CGCAATATGAGTTGATTTTTTG
** * * * * *
15290679 AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGAAGGTTCAACTCACCT
1 AAACAGAA-TT-AAAAGCAGATATTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCT
15290743 CTCGCAATATGAGTTGA-TTTTTG
62 CTCGCAATATGAGTTGATTTTTTG
** * * * ** *** * *
15290766 AAAAACAGAAATTAAAAGACTCA-ACT-CAACT--CTCGCA-GAAATTAAAAAGCTTAACTCACC
1 --AAACAG-AATTAAAAG-CAGATATTGAAAATACCTCGCACGTGA-GCCAAGGCTCAACTCACC
15290826 TCTCGCAATATGAGTTGAATTTTTTTG
61 TCTCGCAATATGAGTTG-A-TTTTTTG
* * * *
15290853 --A-A-AA--AAAA-CAGAAATTGAAAATAGCTCAGCACGTGAGCTAAGGCTCAACTCACTTCTC
1 AAACAGAATTAAAAGCAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTC
15290911 GCAATATGAGTTGA-TTTTTG
65 GCAATATGAGTTGATTTTTTG
* * * * * *
15290931 AAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACAT
1 -AAACAGAAT-T-AAAAGCAGATATTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCT
*
15290996 CTCGCAATGTGAGTTGATTTTTTTG
62 CTCGCAATATGAGTTGA-TTTTTTG
15291021 AAA
1 AAA
15291024 AATATAAATT
Statistics
Matches: 265, Mismatches: 48, Indels: 62
0.71 0.13 0.17
Matches are distributed among these distances:
76 2 0.01
77 2 0.01
78 13 0.05
80 6 0.02
81 33 0.12
82 4 0.02
83 5 0.02
84 30 0.11
85 5 0.02
86 1 0.00
87 29 0.11
88 116 0.44
89 11 0.04
90 8 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (85 bp):
AAACAGAATTAAAAGCAGATATTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTG
Found at i:15290807 original size:30 final size:30
Alignment explanation
Indices: 15290771--15290832 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
15290761 TTTTGAAAAA
15290771 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
* *
15290801 CAGAAATTAAAAAGCTTAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
15290831 CA
1 CA
15290833 ATATGAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.27, G:0.10, T:0.21
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:15291161 original size:75 final size:77
Alignment explanation
Indices: 15290983--15291194 Score: 266
Period size: 79 Copynumber: 2.7 Consensus size: 77
15290973 GTGACCCGAG
* * * * *
15290983 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCTCA
* * * *
15291048 GTGTGTGATCTGAA
64 GCGCGTGAGCTCAA
*
15291062 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACA-AAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
15291126 GCGTGAGC-CAA
66 GCGTGAGCTCAA
* *
15291137 GGTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAGAAATTGAAAA
15291195 ACGGAAATTG
Statistics
Matches: 119, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
75 31 0.26
76 17 0.14
77 14 0.12
78 16 0.13
79 41 0.34
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (77 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
GCGTGAGCTCAA
Found at i:15291259 original size:168 final size:165
Alignment explanation
Indices: 15291037--15291507 Score: 455
Period size: 168 Copynumber: 2.9 Consensus size: 165
15291027 ATAAATTGAA
* * * *
15291037 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
*
15291102 AGACA-AAATTGAAAATAGCTCAGCGCGTGAGCC-AAGG-TCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
**
15291164 TGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
127 TGA--TTTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
* * * *
15291205 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * *
15291270 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
15291335 TTTTTTGAAAAAC------------A--GAAATTG
131 TTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
* * * ** *
15291356 AAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTG
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGA--TTTTTTTG
* * * * * **
15291419 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTT
64 -AAAACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
*
15291484 GA--ATTTTG-AAAACAGAAATTGAAA
128 GATTTTTTTGAAAAACAGAAATTGAAA
15291508 TTACCTCAGC
Statistics
Matches: 257, Mismatches: 29, Indels: 42
0.78 0.09 0.13
Matches are distributed among these distances:
149 36 0.14
150 5 0.02
151 30 0.12
152 59 0.23
153 1 0.00
165 14 0.05
166 8 0.03
167 31 0.12
168 73 0.28
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (165 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
Found at i:15291340 original size:242 final size:241
Alignment explanation
Indices: 15290603--15291436 Score: 911
Period size: 253 Copynumber: 3.4 Consensus size: 241
15290593 AACAGACATT
15290603 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
** * * *
15290668 TTGATTTTTTG-AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGAAGG
66 TTGATTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTG-AGG
* * * *
15290731 TTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTAAAAGACTCAACTCA
130 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT-GAA-A-TTACCTCA
* * * *
15290794 AC-TCTCGCAGAAATTAAAAAGCTTAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
192 GCGTGTC-C------T--GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG
* *
15290853 AAAAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCTAAGGCTCAACTCACTTCTCGCAATAT
1 ---AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
15290918 GAGTTGA-TTTTTGAAAACAG-AATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCG
63 GAGTTGATTTTTTGAAAACAGAAAT-TGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTG
* * * * *
15290981 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
127 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG--AAATTACCT
* *
15291046 CAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
190 CAGCGTGT--CCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* *
15291100 AAAGACA-AAATTGAAAATAGCTCAGCGCGTGAGCCAAGG-TCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * ** * *
15291163 TTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTG
66 TTGA---TTTTTTGAAA-ACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTG
* * * *
15291228 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTACCTCA
127 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAATTACCTCA
*
15291292 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
192 GCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * ** ** *
15291342 AAAAACAGAAATTGAAAATACCTCAGCA--TG-TCTTGAGGCTCAACTCATTTCTCACAATATGA
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
15291404 GTTGATTTTTTTTTGAAAAACAGAAATTGAAAA
65 GTTGA---TTTTTTG-AAAACAGAAATTGAAAA
15291437 TACCTCAGCA
Statistics
Matches: 505, Mismatches: 56, Indels: 51
0.83 0.09 0.08
Matches are distributed among these distances:
240 1 0.00
241 5 0.01
242 123 0.24
243 51 0.10
244 21 0.04
246 19 0.04
247 80 0.16
248 33 0.07
250 1 0.00
252 8 0.02
253 133 0.26
254 7 0.01
255 20 0.04
256 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (241 bp):
AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAACAGAAATTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
GTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:15291444 original size:77 final size:75
Alignment explanation
Indices: 15291188--15291540 Score: 462
Period size: 77 Copynumber: 4.7 Consensus size: 75
15291178 AAGGCAGAAA
* * * *** *
15291188 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAT
15291253 GAGTTGATTTTT
64 GAGTTGATTTTT
* * * ** *
15291265 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
15291329 GTTGATTTTT
66 GTTGATTTTT
*
15291339 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
15291404 GTTGATTTTTTT
66 GTTGA--TTTTT
* * *
15291416 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
*
15291481 GTTGA--ATT
66 GTTGATTTTT
* *
15291489 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTTATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
15291541 TGAACAGAAA
Statistics
Matches: 253, Mismatches: 20, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
72 46 0.18
73 5 0.02
74 41 0.16
75 59 0.23
76 26 0.10
77 76 0.30
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
GTTGATTTTT
Found at i:15291514 original size:149 final size:148
Alignment explanation
Indices: 15291188--15291540 Score: 476
Period size: 149 Copynumber: 2.4 Consensus size: 148
15291178 AAGGCAGAAA
* * * ***
15291188 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAC
* * * *
15291253 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
64 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTC
*
15291318 TCGCAATATGAGTTGATTTTT
129 TCGCAATATGAGTTGA-TATT
* *
15291339 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
* **
15291404 GTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTT
66 GTTGA--TTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCT
15291469 CTCGCAATATGAGTTGA-ATT
128 CTCGCAATATGAGTTGATATT
* *
15291489 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTTATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
15291541 TGAACAGAAA
Statistics
Matches: 180, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
149 77 0.43
150 5 0.03
151 39 0.22
152 59 0.33
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
GCAATATGAGTTGATATT
Found at i:15291560 original size:49 final size:49
Alignment explanation
Indices: 15291494--15291589 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 49
15291484 GAATTTTGAA
* *
15291494 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTTATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
*
15291543 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGTCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
15291590 CTCGCAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:15291575 original size:121 final size:121
Alignment explanation
Indices: 15291422--15291656 Score: 416
Period size: 121 Copynumber: 1.9 Consensus size: 121
15291412 TTTTTTGAAA
*
15291422 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
15291487 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTTATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTTATTTTG
* * * *
15291543 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGTCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
15291608 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
15291657 CATTCTCGCA
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 108 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTTATTTTG
Done.