Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 6 of 328
Found at i:1646332 original size:16 final size:16
Alignment explanation
Indices: 1646311--1646341 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1646301 GTTTAAAAAA
1646311 ATTGATACTAAAATAT
1 ATTGATACTAAAATAT
*
1646327 ATTGATACTAGAATA
1 ATTGATACTAAAATA
1646342 CACCAATTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.35
Consensus pattern (16 bp):
ATTGATACTAAAATAT
Found at i:1658946 original size:19 final size:19
Alignment explanation
Indices: 1658905--1658949 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
1658895 ATTGAATTGT
*
1658905 TTTAAAATTTAGACACTAC
1 TTTAAAATTTAGACACTAA
*
1658924 TTTAAAATTT-GACTCGTAA
1 TTTAAAATTTAGACAC-TAA
1658943 TTTAAAA
1 TTTAAAA
1658950 CATTTTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (19 bp):
TTTAAAATTTAGACACTAA
Found at i:1659526 original size:18 final size:17
Alignment explanation
Indices: 1659484--1659526 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
1659474 TATTTAAGTT
*
1659484 TGTAATGTTTTATATTA
1 TGTAATTTTTTATATTA
* *
1659501 TTTTATTTTTATATATTA
1 TGTAATTTTT-TATATTA
1659519 TGTAATTT
1 TGTAATTT
1659527 ATAACACGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (17 bp):
TGTAATTTTTTATATTA
Found at i:1666108 original size:21 final size:20
Alignment explanation
Indices: 1666070--1666108 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
1666060 ATATCCAATT
* *
1666070 AATTATTTTATTTTTCTTTG
1 AATTATTTTATGTGTCTTTG
1666090 AATTAGTTTTATGTGTCTT
1 AATTA-TTTTATGTGTCTT
1666109 ATCTGAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.21, C:0.05, G:0.10, T:0.64
Consensus pattern (20 bp):
AATTATTTTATGTGTCTTTG
Found at i:1669215 original size:60 final size:60
Alignment explanation
Indices: 1669122--1669239 Score: 227
Period size: 60 Copynumber: 2.0 Consensus size: 60
1669112 CGGCTTGACC
*
1669122 CAATTTGGATCAATTTAAATAAAATGGGTTTTTAGTGAAATATTTTTTTAAAACCAAAGT
1 CAATTTGGATCAATTTAAATAAAATGGGTTTTTAGTGAAATATTTATTTAAAACCAAAGT
1669182 CAATTTGGATCAATTTAAATAAAATGGGTTTTTAGTGAAATATTTATTTAAAACCAAA
1 CAATTTGGATCAATTTAAATAAAATGGGTTTTTAGTGAAATATTTATTTAAAACCAAA
1669240 CCCAAAATAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.39
Consensus pattern (60 bp):
CAATTTGGATCAATTTAAATAAAATGGGTTTTTAGTGAAATATTTATTTAAAACCAAAGT
Found at i:1669322 original size:16 final size:17
Alignment explanation
Indices: 1669301--1669335 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
1669291 ACAAAATAAG
1669301 AATAATTTTACTT-AAA
1 AATAATTTTACTTCAAA
*
1669317 AATAATTTTTCTTCAAA
1 AATAATTTTACTTCAAA
1669334 AA
1 AA
1669336 CTTTATATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (17 bp):
AATAATTTTACTTCAAA
Found at i:1677765 original size:23 final size:24
Alignment explanation
Indices: 1677713--1677765 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 24
1677703 TAATTGTTTG
* *
1677713 TAAATATGTTTAATTATATGTTTA
1 TAAACATGTTTAATTATATGTTCA
*
1677737 TGAACATG-TTAATCTA-ATGTTCA
1 TAAACATGTTTAAT-TATATGTTCA
1677760 TAAACA
1 TAAACA
1677766 AATCCTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (24 bp):
TAAACATGTTTAATTATATGTTCA
Found at i:1677829 original size:10 final size:10
Alignment explanation
Indices: 1677810--1677856 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
1677800 GTAATTTTAA
1677810 ATAAACAAAC
1 ATAAACAAAC
*
1677820 ATAAATAAAC
1 ATAAACAAAC
* *
1677830 TTAAA-AATAA
1 ATAAACAA-AC
1677840 ATAAACAAAC
1 ATAAACAAAC
1677850 ATAAACA
1 ATAAACA
1677857 GAGGCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
9 2 0.07
10 26 0.87
11 2 0.07
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (10 bp):
ATAAACAAAC
Found at i:1683398 original size:17 final size:16
Alignment explanation
Indices: 1683376--1683410 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
1683366 CTTAGATATG
*
1683376 AAGTTAAAGAAATAAAA
1 AAGTTAAA-AAAGAAAA
1683393 AAGTTAAAAAAGAAAA
1 AAGTTAAAAAAGAAAA
1683409 AA
1 AA
1683411 AAAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (16 bp):
AAGTTAAAAAAGAAAA
Found at i:1686023 original size:24 final size:24
Alignment explanation
Indices: 1685995--1686044 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
1685985 GACGTGATAA
*
1685995 ATATATTATCATATGTGTAATGCT
1 ATATATTATCATATGTGTAATACT
1686019 ATATATTATCATATGTGTAATACT
1 ATATATTATCATATGTGTAATACT
1686043 AT
1 AT
1686045 GTCAATTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (24 bp):
ATATATTATCATATGTGTAATACT
Found at i:1688376 original size:20 final size:20
Alignment explanation
Indices: 1688353--1688403 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
1688343 ATGTTATAAA
1688353 ATATATTATATTAATTATAT
1 ATATATTATATTAATTATAT
*
1688373 ATATTAATTA-A-GAATTATAT
1 ATA-T-ATTATATTAATTATAT
1688393 ATAT-TTATATT
1 ATATATTATATT
1688404 TATATTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 9
0.69 0.06 0.25
Matches are distributed among these distances:
17 3 0.12
18 1 0.04
19 1 0.04
20 14 0.56
21 2 0.08
22 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
ATATATTATATTAATTATAT
Found at i:1688377 original size:13 final size:14
Alignment explanation
Indices: 1688354--1688411 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 14
1688344 TGTTATAAAA
1688354 TATATTATATTAAT
1 TATATTATATTAAT
1688368 TATA-TATATTAAT
1 TATATTATATTAAT
* *
1688381 TAAGAATTATATATATT
1 T-A-TATTATAT-TAAT
1688398 TATATTTATATTAA
1 TATA-TTATATTAA
1688412 ATCACTAATC
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
13 10 0.29
14 5 0.14
15 4 0.11
16 12 0.34
17 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
TATATTATATTAAT
Found at i:1688591 original size:38 final size:38
Alignment explanation
Indices: 1688512--1688597 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 38
1688502 AAAATTTATA
* * * *
1688512 TTTAATACAATAAATATTTATTTATATTTGTTTGTGTT
1 TTTAATATAAAAAACATTTATTTATATTTGTTAGTGTT
1688550 TTTAATATAAAAAACATTTA-TTATATTTGTGGTAGTG-T
1 TTTAATATAAAAAACATTTATTTATATTTGT--TAGTGTT
1688588 TTT-ATATAAA
1 TTTAATATAAA
1688598 TATTTTTGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
37 17 0.40
38 21 0.50
39 4 0.10
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.52
Consensus pattern (38 bp):
TTTAATATAAAAAACATTTATTTATATTTGTTAGTGTT
Found at i:1696336 original size:26 final size:26
Alignment explanation
Indices: 1696300--1696365 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
1696290 AAATTAAAAC
* *
1696300 TTAATTTTATCATAAAAAG-TAAATAA
1 TTAAATTTATC-TAAAAAGAAAAATAA
***
1696326 TTAAATTTATCTAATCTGAAAAATAA
1 TTAAATTTATCTAAAAAGAAAAATAA
1696352 TTAAATTTATCTAA
1 TTAAATTTATCTAA
1696366 TTCAAACATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 4 0.12
26 30 0.88
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (26 bp):
TTAAATTTATCTAAAAAGAAAAATAA
Found at i:1705737 original size:21 final size:21
Alignment explanation
Indices: 1705711--1705750 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
1705701 ACCAAGTGTG
1705711 GGCTTAATTAGTAATTAAAAT
1 GGCTTAATTAGTAATTAAAAT
1705732 GGCTTAATTAGTAATTAAA
1 GGCTTAATTAGTAATTAAA
1705751 TTTTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.38
Consensus pattern (21 bp):
GGCTTAATTAGTAATTAAAAT
Found at i:1709865 original size:14 final size:15
Alignment explanation
Indices: 1709846--1709878 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
1709836 ATGTTATATC
*
1709846 ATTAAAATT-CATTT
1 ATTAAAATTAAATTT
1709860 ATTAAAATTAAATTT
1 ATTAAAATTAAATTT
1709875 ATTA
1 ATTA
1709879 CAATATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAAAATTAAATTT
Found at i:1715325 original size:35 final size:35
Alignment explanation
Indices: 1715286--1715358 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
1715276 TTTAGGCATG
* * *
1715286 TTTGTTGGGCCTTTGCCCGAAAAATGGGCTTAAAA
1 TTTGTTAGGCCTATGCCCGAAAAATGGGCCTAAAA
*
1715321 TTTGTTAGGCCTATGCTCGAAAAATGGGCCTAAAA
1 TTTGTTAGGCCTATGCCCGAAAAATGGGCCTAAAA
1715356 TTT
1 TTT
1715359 TTGCCCAAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (35 bp):
TTTGTTAGGCCTATGCCCGAAAAATGGGCCTAAAA
Found at i:1716526 original size:21 final size:21
Alignment explanation
Indices: 1716483--1716526 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1716473 AAATTGTTTT
**
1716483 TTATCTTTTATTTTTGATAAA
1 TTATCTTTTATTGATGATAAA
1716504 TTATCTTTT-TTGATGATATAA
1 TTATCTTTTATTGATGATA-AA
1716525 TT
1 TT
1716527 TAGTCTTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (21 bp):
TTATCTTTTATTGATGATAAA
Found at i:1730444 original size:13 final size:13
Alignment explanation
Indices: 1730426--1730450 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1730416 TAGACGATAC
1730426 ACGATAAAATTAG
1 ACGATAAAATTAG
1730439 ACGATAAAATTA
1 ACGATAAAATTA
1730451 ACAAGAAGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (13 bp):
ACGATAAAATTAG
Found at i:1736670 original size:16 final size:16
Alignment explanation
Indices: 1736649--1736684 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1736639 TGGAGTATTA
*
1736649 TTATATTATATTAAAT
1 TTATATTACATTAAAT
*
1736665 TTATATTACATTATAT
1 TTATATTACATTAAAT
1736681 TTAT
1 TTAT
1736685 CTGTTAGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
TTATATTACATTAAAT
Found at i:1744725 original size:104 final size:104
Alignment explanation
Indices: 1744540--1744744 Score: 374
Period size: 104 Copynumber: 2.0 Consensus size: 104
1744530 TTCATCAACT
*
1744540 AAATCTAATTTAAATTAGTGAAATTGAATTGCAAAGGAATTATTGATCTATTGGCTATTGTCATG
1 AAATCTAATTTAAATTAGTGAAATTGAATTGCAAAGGAACTATTGATCTATTGGCTATTGTCATG
*
1744605 TTCCAGTGTTATTAATTTATTTCTTTGTTTTTATAATTA
66 TTCCAATGTTATTAATTTATTTCTTTGTTTTTATAATTA
* *
1744644 AAATTTAATTTAAATTAGTGAAATTGGATTGCAAAGGAACTATTGATCTATTGGCTATTGTCATG
1 AAATCTAATTTAAATTAGTGAAATTGAATTGCAAAGGAACTATTGATCTATTGGCTATTGTCATG
1744709 TTCCAATGTTATTAATTTATTTCTTTGTTTTTATAA
66 TTCCAATGTTATTAATTTATTTCTTTGTTTTTATAA
1744745 GCTTAATTAG
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 97 1.00
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.47
Consensus pattern (104 bp):
AAATCTAATTTAAATTAGTGAAATTGAATTGCAAAGGAACTATTGATCTATTGGCTATTGTCATG
TTCCAATGTTATTAATTTATTTCTTTGTTTTTATAATTA
Found at i:1747418 original size:24 final size:23
Alignment explanation
Indices: 1747391--1747440 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 23
1747381 TTTACGTGTT
1747391 TATTTTTA-AATTTATTAAATAATA
1 TATTTTTATAATTT-TTAAA-AATA
1747415 TATTTTTATAATTTTTAAAAATA
1 TATTTTTATAATTTTTAAAAATA
1747438 TAT
1 TAT
1747441 ATTTGCTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 7 0.28
24 13 0.52
25 5 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TATTTTTATAATTTTTAAAAATA
Found at i:1747450 original size:24 final size:25
Alignment explanation
Indices: 1747391--1747451 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
1747381 TTTACGTGTT
*
1747391 TATTTTTA-AATTTATTAAATAATA
1 TATTTTGATAATTTATTAAATAATA
*
1747415 TATTTTTATAATTT-TTAAA-AATA
1 TATTTTGATAATTTATTAAATAATA
*
1747438 TATATTTGCTAATT
1 TAT-TTTGATAATT
1747452 AAATGAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 7 0.21
24 21 0.64
25 5 0.15
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (25 bp):
TATTTTGATAATTTATTAAATAATA
Found at i:1748278 original size:31 final size:31
Alignment explanation
Indices: 1748236--1748296 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
1748226 CAAAATGGGC
*
1748236 ATTAAACTATTCTAAAGTTTTCATTTAAGTT
1 ATTAAACTATTCAAAAGTTTTCATTTAAGTT
* *
1748267 ATTAAATTATTCAAAAGTTTTTATTTAAGT
1 ATTAAACTATTCAAAAGTTTTCATTTAAGT
1748297 AATTTGATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.49
Consensus pattern (31 bp):
ATTAAACTATTCAAAAGTTTTCATTTAAGTT
Found at i:1755865 original size:47 final size:47
Alignment explanation
Indices: 1755756--1755866 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
1755746 CTGGGATAAG
* * *
1755756 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
1755803 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
1755850 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
1755867 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:1762382 original size:127 final size:122
Alignment explanation
Indices: 1762202--1762427 Score: 303
Period size: 127 Copynumber: 1.8 Consensus size: 122
1762192 TATAATGATA
* * * *
1762202 ATAATAATAATATTAAAGTAAAGTAAATAATAATACTATATATAAATATATATATATATGTATAT
1 ATAATAAAAATATTAAAGTAAAGTAAAAAACAATACTATATATAAATATATATATATA--TACAT
*
1762267 AATAGAAATACACACTACTATATAATAATAATAATAATAAATATAGAAATACAAAAGCAAAT
64 -A-A-AAATACACACTAATATATAATAATAATAATAATAAATATAGAAATACAAAAGCAAAT
*
1762329 ATAATAAAAATATTAAATTAAAGTAATAAAAACAATACTATATAT-AA-ATATATATATATACAT
1 ATAATAAAAATATTAAAGTAAAGT-A-AAAAACAATACTATATATAAATATATATATATATACAT
* *
1762392 AAAAATATACACTAATATATAATAATAATAGTAATA
64 AAAAATACACACTAATATATAATAATAATAATAATA
1762428 GCAAAAATAA
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
122 31 0.35
123 1 0.01
124 1 0.01
125 4 0.04
127 33 0.37
128 3 0.03
129 16 0.18
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (122 bp):
ATAATAAAAATATTAAAGTAAAGTAAAAAACAATACTATATATAAATATATATATATATACATAA
AAATACACACTAATATATAATAATAATAATAATAAATATAGAAATACAAAAGCAAAT
Found at i:1762509 original size:3 final size:3
Alignment explanation
Indices: 1762501--1762556 Score: 51
Period size: 3 Copynumber: 17.7 Consensus size: 3
1762491 CAATAGGGTG
*
1762501 ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CATA TATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA ATA
*
1762549 ATA GTA AT
1 ATA ATA AT
1762557 CAGAAATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 1 0.02
3 34 0.74
4 11 0.24
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1762674 original size:3 final size:3
Alignment explanation
Indices: 1762658--1762731 Score: 55
Period size: 3 Copynumber: 24.0 Consensus size: 3
1762648 CATAAGAAAT
*
1762658 TAA TAA T-A TAAA TAA TAA TATA TACA TAA GAAA TAA TAA TAA TAA T-A
1 TAA TAA TAA T-AA TAA TAA TA-A TA-A TAA -TAA TAA TAA TAA TAA TAA
* *
1762705 TAAA TAA TAG TAA AAA TAA TAA -AA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA
1762732 AAAAAATAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
2 6 0.11
3 39 0.68
4 12 0.21
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:1762675 original size:12 final size:12
Alignment explanation
Indices: 1762658--1762732 Score: 71
Period size: 12 Copynumber: 6.0 Consensus size: 12
1762648 CATAAGAAAT
1762658 TAATAATATAAA
1 TAATAATATAAA
1762670 TAATAATATATACA
1 TAATAATATA-A-A
*
1762684 TAAGAA-ATAATAA
1 TAATAATAT-A-AA
1762697 TAATAATATAAA
1 TAATAATATAAA
* *
1762709 TAATAGTAAAAA
1 TAATAATATAAA
*
1762721 TAATAAAATAAA
1 TAATAATATAAA
1762733 AAAAATAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
12 31 0.60
13 10 0.19
14 11 0.21
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (12 bp):
TAATAATATAAA
Found at i:1762688 original size:34 final size:36
Alignment explanation
Indices: 1762624--1762713 Score: 116
Period size: 34 Copynumber: 2.6 Consensus size: 36
1762614 GAGAGGGCAT
* * *
1762624 ATAATAAT-ATATACATAAGAAATACATAAGAAATTA
1 ATAATAATAATATAAATAATATATACATAAGAAA-TA
1762660 ATAAT-ATAA-AT-AATAATATATACATAAGAAATA
1 ATAATAATAATATAAATAATATATACATAAGAAATA
1762693 ATAATAATAATATAAATAATA
1 ATAATAATAATATAAATAATA
1762714 GTAAAAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
33 7 0.15
34 21 0.45
35 6 0.13
36 13 0.28
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (36 bp):
ATAATAATAATATAAATAATATATACATAAGAAATA
Found at i:1762722 original size:27 final size:27
Alignment explanation
Indices: 1762658--1762739 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 27
1762648 CATAAGAAAT
* * *
1762658 TAATAATATAAATAATAAT-ATATACA
1 TAATAGTAAAAATAATAATAATATAAA
1762684 T-A-AG-AAATAATAATAATAATATAAA
1 TAATAGTAAA-AATAATAATAATATAAA
*
1762709 TAATAGTAAAAATAATAA-AATAAAAA
1 TAATAGTAAAAATAATAATAATATAAA
*
1762735 AAATA
1 TAATA
1762740 AAACAAAGCT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
23 2 0.04
24 10 0.22
25 8 0.17
26 13 0.28
27 10 0.22
28 3 0.07
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.28
Consensus pattern (27 bp):
TAATAGTAAAAATAATAATAATATAAA
Found at i:1762728 original size:9 final size:9
Alignment explanation
Indices: 1762659--1762740 Score: 58
Period size: 9 Copynumber: 8.6 Consensus size: 9
1762649 ATAAGAAATT
*
1762659 AATAATATA
1 AATAATAAA
1762668 AATAATAATA
1 AATAATAA-A
*
1762678 TATACATAAGA
1 AATA-ATAA-A
*
1762689 AATAATAAT
1 AATAATAAA
1762698 AATAATATAAA
1 AAT-A-ATAAA
*
1762709 TAATAGTAAA
1 -AATAATAAA
1762719 AATAAT-AA
1 AATAATAAA
*
1762727 AATAAAAAA
1 AATAATAAA
1762736 AATAA
1 AATAA
1762741 AACAAAGCTC
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
8 7 0.12
9 22 0.38
10 13 0.22
11 13 0.22
12 3 0.05
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (9 bp):
AATAATAAA
Found at i:1763163 original size:13 final size:13
Alignment explanation
Indices: 1763131--1763164 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
1763121 GGAGTGGTTG
1763131 GGGTGGTTTAGTA
1 GGGTGGTTTAGTA
**
1763144 GAATGGTTTAGTA
1 GGGTGGTTTAGTA
1763157 GGGTGGTT
1 GGGTGGTT
1763165 GGGGTGGTTT
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38
Consensus pattern (13 bp):
GGGTGGTTTAGTA
Found at i:1765481 original size:30 final size:30
Alignment explanation
Indices: 1765446--1765503 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
1765436 TAGTTATATA
*
1765446 TTTATAATTTTTAAA-AGATTAAATTAAATT
1 TTTATAA-TTTTAAAGAGATTAAAGTAAATT
*
1765476 TTTATAATTTTAAAGGGATTAAAGTAAA
1 TTTATAATTTTAAAGAGATTAAAGTAAA
1765504 AATTTACCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (30 bp):
TTTATAATTTTAAAGAGATTAAAGTAAATT
Found at i:1767085 original size:16 final size:17
Alignment explanation
Indices: 1767055--1767088 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1767045 GTGGTTGGGA
*
1767055 TCAAAAATATTTTTATT
1 TCAAAAATATATTTATT
1767072 TCAAAAAT-TATTTATT
1 TCAAAAATATATTTATT
1767088 T
1 T
1767089 AGTATTGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
TCAAAAATATATTTATT
Found at i:1769624 original size:14 final size:14
Alignment explanation
Indices: 1769605--1769646 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
1769595 AAAAATATAA
1769605 TAATAATATAATAG
1 TAATAATATAATAG
* *
1769619 TAATAATACAATGG
1 TAATAATATAATAG
1769633 TAATAATACTAATA
1 TAATAATA-TAATA
1769647 AAAGTTAGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 20 0.87
15 3 0.13
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (14 bp):
TAATAATATAATAG
Found at i:1772343 original size:26 final size:26
Alignment explanation
Indices: 1772314--1772397 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
1772304 TGGTACAAAT
1772314 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
1772340 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
1772366 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
1772392 TGATAA
1 TGATAA
1772398 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:1775312 original size:3 final size:3
Alignment explanation
Indices: 1775306--1775343 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
1775296 TAATAACAGG
1775306 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1775344 GTGACGATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:1775619 original size:12 final size:12
Alignment explanation
Indices: 1775602--1775627 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1775592 AGAGATAGTG
1775602 ATAATAGTAATA
1 ATAATAGTAATA
1775614 ATAATAGTAATA
1 ATAATAGTAATA
1775626 AT
1 AT
1775628 GTAAATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (12 bp):
ATAATAGTAATA
Found at i:1775620 original size:21 final size:21
Alignment explanation
Indices: 1775596--1775639 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1775586 CATAAAAGAG
*
1775596 ATAGTGATAATAGT-AATAATA
1 ATAGTAATAAT-GTAAATAATA
1775617 ATAGTAATAATGTAAATAATA
1 ATAGTAATAATGTAAATAATA
1775638 AT
1 AT
1775640 GTATATATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (21 bp):
ATAGTAATAATGTAAATAATA
Found at i:1775636 original size:12 final size:12
Alignment explanation
Indices: 1775621--1775676 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
1775611 ATAATAATAG
1775621 TAATAATGTAAA
1 TAATAATGTAAA
*
1775633 TAATAATGTATA
1 TAATAATGTAAA
* *
1775645 T-ATGTATG-AGA
1 TAAT-AATGTAAA
1775656 -AATAATGTAAA
1 TAATAATGTAAA
1775667 TAATAATGTA
1 TAATAATGTA
1775677 TATATATATA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
10 3 0.09
11 8 0.23
12 24 0.69
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (12 bp):
TAATAATGTAAA
Found at i:1783602 original size:50 final size:50
Alignment explanation
Indices: 1783527--1783803 Score: 473
Period size: 50 Copynumber: 5.5 Consensus size: 50
1783517 CCATGGCAAC
* *
1783527 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1783577 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
1783627 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1783677 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
1783727 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
1783778 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
1783804 CTGATCATCG
Statistics
Matches: 216, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
50 193 0.89
51 23 0.11
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:1787285 original size:19 final size:21
Alignment explanation
Indices: 1787256--1787295 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
1787246 ATAGTCAATT
*
1787256 ATATGAATTTA-ATGTTTAAA
1 ATATGAATTTATATATTTAAA
1787276 ATAT-AATTTATATATTTAAA
1 ATATGAATTTATATATTTAAA
1787296 TTTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (21 bp):
ATATGAATTTATATATTTAAA
Found at i:1787321 original size:28 final size:27
Alignment explanation
Indices: 1787288--1787344 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
1787278 ATAATTTATA
* * *
1787288 TATTTAAATTTAATTTTTACAAATAATT
1 TATTTAAACTAAATTTTTAAAAAT-ATT
*
1787316 TATTTATACTAAATTTTTAAAAATATT
1 TATTTAAACTAAATTTTTAAAAATATT
1787343 TA
1 TA
1787345 AAATTTATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (27 bp):
TATTTAAACTAAATTTTTAAAAATATT
Found at i:1787329 original size:33 final size:33
Alignment explanation
Indices: 1787261--1787331 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
1787251 CAATTATATG
*
1787261 AATTTAATGTTTAAAATATAATTTATATATTTA
1 AATTTAATGTTTAAAATATAATTTATATATCTA
* * *
1787294 AATTTAATTTTTACAA-ATAATTTATTTATACTA
1 AATTTAATGTTTAAAATATAATTTATATAT-CTA
1787327 AATTT
1 AATTT
1787332 TTAAAAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 12 0.36
33 21 0.64
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (33 bp):
AATTTAATGTTTAAAATATAATTTATATATCTA
Found at i:1787387 original size:38 final size:38
Alignment explanation
Indices: 1787332--1787410 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
1787322 TACTAAATTT
*
1787332 TTAAAAATATTTAAAATTTATATTTATATATTATAATA
1 TTAAAAATATTTAAAATTTAAATTTATATATTATAATA
* *
1787370 TTAAATATCATTT-AAATTTAAATTTATGTATTATAATA
1 TTAAAAAT-ATTTAAAATTTAAATTTATATATTATAATA
1787408 TTA
1 TTA
1787411 GCAAATATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
38 33 0.89
39 4 0.11
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (38 bp):
TTAAAAATATTTAAAATTTAAATTTATATATTATAATA
Found at i:1788196 original size:23 final size:23
Alignment explanation
Indices: 1788152--1788197 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1788142 CAAATTTTTT
**
1788152 GAATTTTTTATTTTGACTATTTA
1 GAATTTTTTATTTTGAAAATTTA
*
1788175 GAATTTTTTATTTTTAAAATTTA
1 GAATTTTTTATTTTGAAAATTTA
1788198 TTACAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (23 bp):
GAATTTTTTATTTTGAAAATTTA
Found at i:1789944 original size:54 final size:54
Alignment explanation
Indices: 1789862--1789969 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
1789852 TCTTGCCTTC
1789862 TTTTAACGGTCTTATAAAATCTACTGCTAAAGATGTGTAAAAGTTAAGTGATTA
1 TTTTAACGGTCTTATAAAATCTACTGCTAAAGATGTGTAAAAGTTAAGTGATTA
1789916 TTTTAACGGTCTTATAAAATCTACTGCTAAAGATGTGTAAAAGTTAAGTGATTA
1 TTTTAACGGTCTTATAAAATCTACTGCTAAAGATGTGTAAAAGTTAAGTGATTA
1789970 AATTGATCAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (54 bp):
TTTTAACGGTCTTATAAAATCTACTGCTAAAGATGTGTAAAAGTTAAGTGATTA
Found at i:1790050 original size:14 final size:16
Alignment explanation
Indices: 1790026--1790057 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
1790016 AAATTTTCTC
1790026 TTAAGCCCAAA-TAAA
1 TTAAGCCCAAATTAAA
1790041 TTAA-CCCAAATTAAA
1 TTAAGCCCAAATTAAA
1790056 TT
1 TT
1790058 CTCAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.50, C:0.19, G:0.03, T:0.28
Consensus pattern (16 bp):
TTAAGCCCAAATTAAA
Found at i:1791229 original size:21 final size:21
Alignment explanation
Indices: 1791204--1791244 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1791194 CAGAAGAAGG
*
1791204 AAAAACTCAAGTACCAAATTA
1 AAAAAATCAAGTACCAAATTA
* *
1791225 AAAAAATTATGTACCAAATT
1 AAAAAATCAAGTACCAAATT
1791245 GAATATTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (21 bp):
AAAAAATCAAGTACCAAATTA
Found at i:1794560 original size:7 final size:8
Alignment explanation
Indices: 1794540--1794569 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
1794530 TTTTTTGCTT
1794540 GTTTTTGA
1 GTTTTTGA
1794548 GTTTTTGA
1 GTTTTTGA
1794556 GTTTTTGA
1 GTTTTTGA
1794564 GTTTTT
1 GTTTTT
1794570 CGGTTTGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.23, T:0.67
Consensus pattern (8 bp):
GTTTTTGA
Found at i:1794873 original size:14 final size:14
Alignment explanation
Indices: 1794854--1794888 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
1794844 CTGGTGGACA
1794854 TTGGCATTTGCCAT
1 TTGGCATTTGCCAT
1794868 TTGGCATTTGCCAT
1 TTGGCATTTGCCAT
1794882 TTGGCAT
1 TTGGCAT
1794889 CCTTTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.14, C:0.20, G:0.23, T:0.43
Consensus pattern (14 bp):
TTGGCATTTGCCAT
Found at i:1819715 original size:2 final size:2
Alignment explanation
Indices: 1819708--1819734 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1819698 GCATACACAA
1819708 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1819735 AGCAAACCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1821573 original size:15 final size:15
Alignment explanation
Indices: 1821553--1821582 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1821543 AGACTTGTAA
*
1821553 TAATAATGATAAAAG
1 TAATAATGAAAAAAG
1821568 TAATAATGAAAAAAG
1 TAATAATGAAAAAAG
1821583 CCTGCAACTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.23
Consensus pattern (15 bp):
TAATAATGAAAAAAG
Found at i:1824247 original size:39 final size:39
Alignment explanation
Indices: 1824204--1824280 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
1824194 ATTGCTTATA
*
1824204 AATTCTAAATATAGCATTTATTATACTTTTACGTATTTC
1 AATTCTAAATATAGCATTTATTATACTTTTACATATTTC
1824243 AATTCTAAATATAGCATTTATTATACTTTTACATATTT
1 AATTCTAAATATAGCATTTATTATACTTTTACATATTT
1824281 TATAAGTGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.35, C:0.12, G:0.04, T:0.49
Consensus pattern (39 bp):
AATTCTAAATATAGCATTTATTATACTTTTACATATTTC
Found at i:1830502 original size:17 final size:17
Alignment explanation
Indices: 1830482--1830579 Score: 53
Period size: 17 Copynumber: 5.8 Consensus size: 17
1830472 AATACTACTC
1830482 TAATATAAATATTAAAA
1 TAATATAAATATTAAAA
* * *
1830499 TAATGTTAATA-T-AAC
1 TAATATAAATATTAAAA
*
1830514 TATATATAAA-ATTTAATA
1 TA-ATATAAATA-TTAAAA
1830532 TAA-ATAAAATTATATAAAA
1 TAATAT-AAA-TAT-TAAAA
* *
1830551 TTAT-TAAATATTAAGA
1 TAATATAAATATTAAAA
*
1830567 TAAAATAAATATT
1 TAATATAAATATT
1830580 TTTTAAAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 20
0.65 0.13 0.22
Matches are distributed among these distances:
15 5 0.08
16 14 0.24
17 25 0.42
18 7 0.12
19 8 0.14
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (17 bp):
TAATATAAATATTAAAA
Found at i:1833261 original size:21 final size:21
Alignment explanation
Indices: 1833237--1833278 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1833227 GTGAGTTAGA
*
1833237 ATGGGATCTGTTGGCTTCTAT
1 ATGGGATCTGTTGGCTCCTAT
1833258 ATGGGATCTGTTGGCTCCTAT
1 ATGGGATCTGTTGGCTCCTAT
1833279 TCGTTCTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.17, G:0.29, T:0.40
Consensus pattern (21 bp):
ATGGGATCTGTTGGCTCCTAT
Found at i:1836128 original size:152 final size:152
Alignment explanation
Indices: 1835852--1836154 Score: 561
Period size: 152 Copynumber: 2.0 Consensus size: 152
1835842 CTTCATCATA
* * *
1835852 TAGTCATATTCCTGGTCGTGTAGTCGGTGAGGTGCAAGTTACCTTTGATTATGTTGTCAGTAGTC
1 TAGTCATATTCCTAGTAGTGTAGTCGGTGAGGTGCAAGTTACCTTTGATTATGTTGTCAGTAATC
1835917 TCTCTTGCTTGTCTCTCTCCGTTTGAATCTTTAGATTTTGAATCTGTTGTTGTGATGATATTACT
66 TCTCTTGCTTGTCTCTCTCCGTTTGAATCTTTAGATTTTGAATCTGTTGTTGTGATGATATTACT
*
1835982 GATTAGTAAATAATTACCGCAC
131 GATCAGTAAATAATTACCGCAC
1836004 TAGTCATATTCCTAGTAGTGTAGTCGGTGAGGTGCAAGTTACCTTTGATTATGTTGTCAGTAATC
1 TAGTCATATTCCTAGTAGTGTAGTCGGTGAGGTGCAAGTTACCTTTGATTATGTTGTCAGTAATC
*
1836069 TCTCTTGCTTGTCTCTCTTCGTTTGAATCTTTAGATTTTGAATCTGTTGTTGTGATGATATTACT
66 TCTCTTGCTTGTCTCTCTCCGTTTGAATCTTTAGATTTTGAATCTGTTGTTGTGATGATATTACT
1836134 GATCAGTAAATAATTACCGCA
131 GATCAGTAAATAATTACCGCA
1836155 TTTCATCTTC
Statistics
Matches: 146, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
152 146 1.00
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.42
Consensus pattern (152 bp):
TAGTCATATTCCTAGTAGTGTAGTCGGTGAGGTGCAAGTTACCTTTGATTATGTTGTCAGTAATC
TCTCTTGCTTGTCTCTCTCCGTTTGAATCTTTAGATTTTGAATCTGTTGTTGTGATGATATTACT
GATCAGTAAATAATTACCGCAC
Found at i:1838024 original size:12 final size:12
Alignment explanation
Indices: 1838007--1838032 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1837997 ATTTAATTTC
1838007 TTGTTAATCATA
1 TTGTTAATCATA
1838019 TTGTTAATCATA
1 TTGTTAATCATA
1838031 TT
1 TT
1838033 AATTTTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (12 bp):
TTGTTAATCATA
Found at i:1838081 original size:12 final size:12
Alignment explanation
Indices: 1838064--1838123 Score: 57
Period size: 12 Copynumber: 4.9 Consensus size: 12
1838054 ATAAATAAAA
1838064 TTTAATTTAATT
1 TTTAATTTAATT
1838076 TTTAATTTAATGT
1 TTTAATTTAAT-T
* * ** **
1838089 ATAAAAATAAAA
1 TTTAATTTAATT
1838101 TTTAATTTAATT
1 TTTAATTTAATT
1838113 TTTAATTTAAT
1 TTTAATTTAAT
1838124 GTATAAAAAT
Statistics
Matches: 35, Mismatches: 12, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
12 28 0.80
13 7 0.20
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TTTAATTTAATT
Found at i:1838106 original size:37 final size:37
Alignment explanation
Indices: 1838056--1838133 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
1838046 AAAAATAAAT
1838056 AAATAAAATTTAATTTAATTTTTAATTTAATGTATAA
1 AAATAAAATTTAATTTAATTTTTAATTTAATGTATAA
1838093 AAATAAAATTTAATTTAATTTTTAATTTAATGTATAA
1 AAATAAAATTTAATTTAATTTTTAATTTAATGTATAA
1838130 AAAT
1 AAAT
1838134 TAATTTATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (37 bp):
AAATAAAATTTAATTTAATTTTTAATTTAATGTATAA
Found at i:1839163 original size:31 final size:31
Alignment explanation
Indices: 1839078--1839179 Score: 107
Period size: 31 Copynumber: 3.3 Consensus size: 31
1839068 AAAAATCATC
* * *
1839078 ATTAAGCCCTTCAAAAATTCTGAAATTTTTA
1 ATTAAGCCCTACAAATATTTTGAAATTTTTA
* ** * *
1839109 CTTAAGATC-ACAATTTTTTTGAAATTTTTA
1 ATTAAGCCCTACAAATATTTTGAAATTTTTA
*
1839139 ATTAAGCCCTACAAATATTTTGAAACTTTTA
1 ATTAAGCCCTACAAATATTTTGAAATTTTTA
*
1839170 ATTAAACCCT
1 ATTAAGCCCT
1839180 TTAGAATTCC
Statistics
Matches: 55, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
30 22 0.40
31 33 0.60
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41
Consensus pattern (31 bp):
ATTAAGCCCTACAAATATTTTGAAATTTTTA
Found at i:1861773 original size:16 final size:16
Alignment explanation
Indices: 1861752--1861784 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1861742 AATAAATCAT
1861752 TAAAAAAT-TATAAAAA
1 TAAAAAATAT-TAAAAA
1861768 TAAAAAATATTAAAAA
1 TAAAAAATATTAAAAA
1861784 T
1 T
1861785 TCGATTCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
TAAAAAATATTAAAAA
Found at i:1864016 original size:42 final size:42
Alignment explanation
Indices: 1863957--1864129 Score: 172
Period size: 42 Copynumber: 4.0 Consensus size: 42
1863947 CGTTTTCTCG
** * *
1863957 ATGCCATAGTTCAGCTATGGTTTTACACATCTTCACATAAT-A
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-ATCA
* *
1863999 ATGCCATAGCCCAGCTATGGTCTTACACATATTCATATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATATCA
* *
1864041 ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATTACATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATATCA
1864090 ATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATATC
1 ATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATATC
1864130 TCACTGATGC
Statistics
Matches: 113, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
41 10 0.09
42 61 0.54
43 1 0.01
45 2 0.02
47 1 0.01
48 2 0.02
49 36 0.32
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACATATTCACATATCA
Found at i:1864097 original size:49 final size:48
Alignment explanation
Indices: 1864024--1864207 Score: 198
Period size: 49 Copynumber: 3.8 Consensus size: 48
1864014 TATGGTCTTA
*
1864024 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATATTC--ATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
*
1864074 CACATATTACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
1 CACATATT-CATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
* * * *
1864122 CACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AG
1 CACATAT-TCATATCGATGCCATAGCCCAGATATGGTCTTACAC-GTAAT
* * * *
1864169 CATATA-TCACACCGATGCCATATCCCAGATATGGTCTTA
1 CACATATTCATATCGATGCCATAGCCCAGATATGGTCTTA
1864208 TACGGAAATC
Statistics
Matches: 120, Mismatches: 8, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
45 3 0.03
46 26 0.22
47 34 0.28
48 12 0.10
49 36 0.30
50 8 0.07
51 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (48 bp):
CACATATTCATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
Found at i:1864210 original size:47 final size:46
Alignment explanation
Indices: 1864039--1864207 Score: 194
Period size: 47 Copynumber: 3.6 Consensus size: 46
1864029 ATTCATATAT
* * *
1864039 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATTACATAT
1 CGATGCCATAGCCCAGATATGGTCTTACACGT-ATCACATA-T-CACAC
* * *
1864088 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACAC
* * * * *
1864134 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATAGCCCAGATATGGTCTTACAC-GTATCACATATCACAC
*
1864181 CGATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATAGCCCAGATATGGTCTTA
1864208 TACGGAAATC
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
46 28 0.26
47 39 0.37
48 8 0.08
49 31 0.29
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (46 bp):
CGATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACAC
Found at i:1865661 original size:93 final size:93
Alignment explanation
Indices: 1865549--1865720 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
1865539 CGCCCATAAG
* *
1865549 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1865614 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
1865642 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1865707 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
1865721 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:1865717 original size:46 final size:46
Alignment explanation
Indices: 1865542--1865717 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
1865532 TGTAACCCGC
* * *
1865542 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
1865588 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
1865638 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
1865681 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
1865718 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:1873158 original size:46 final size:46
Alignment explanation
Indices: 1873091--1873264 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
1873081 TGTAACCCGC
*
1873091 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
1873137 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
1873187 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
1873229 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
1873265 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 26 0.24
46 36 0.33
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:1873256 original size:92 final size:93
Alignment explanation
Indices: 1873098--1873268 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
1873088 CGCCCATAAG
* *
1873098 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1873163 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
1873191 CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1873255 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
1873269 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 49 0.65
93 26 0.35
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:1874600 original size:31 final size:31
Alignment explanation
Indices: 1874564--1874631 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
1874554 CCACTATATA
1874564 TTCACTGATCAGGTAGCC-AGAGCTACCACTT
1 TTCACTGATCAGGTAGCCGA-AGCTACCACTT
1874595 TTCACTGATCAGGTAGCCGAAGCTACCACTT
1 TTCACTGATCAGGTAGCCGAAGCTACCACTT
1874626 TTCACT
1 TTCACT
1874632 TGTCATTTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 35 0.97
32 1 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (31 bp):
TTCACTGATCAGGTAGCCGAAGCTACCACTT
Found at i:1874712 original size:50 final size:51
Alignment explanation
Indices: 1874607--1874735 Score: 215
Period size: 50 Copynumber: 2.5 Consensus size: 51
1874597 CACTGATCAG
* * *
1874607 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
*
1874658 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
1874708 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
1874736 TGCCATGGTC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 48 0.66
51 25 0.34
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:1875153 original size:10 final size:9
Alignment explanation
Indices: 1875127--1875157 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
1875117 TTGTGTGTTC
1875127 TTTATTTTA
1 TTTATTTTA
1875136 TTTATTTTA
1 TTTATTTTA
1875145 TTCTATTTTA
1 TT-TATTTTA
1875155 TTT
1 TTT
1875158 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:1879601 original size:10 final size:9
Alignment explanation
Indices: 1879575--1879605 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
1879565 TTGTGTGTTC
1879575 TTTATTTTA
1 TTTATTTTA
1879584 TTTATTTTA
1 TTTATTTTA
1879593 TTCTATTTTA
1 TT-TATTTTA
1879603 TTT
1 TTT
1879606 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:1883198 original size:89 final size:89
Alignment explanation
Indices: 1883050--1883922 Score: 584
Period size: 89 Copynumber: 10.0 Consensus size: 89
1883040 TATTGTCTGT
* * * * * *
1883050 GGTCGGGGTTTTGT-T-TCGACTCTGCCTAGACTCC-GAT-AGGGTGACATAGTTGAGCGTCTTG
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTG-TCAGGGTGACAGAGTTGAGTGTCTTG
* *
1883111 TAGTAACAGGTGAATCTATGTCTTC
65 TAGTAACAGGTGAAACTATGTCCTC
* ** *
1883136 GGTCGAGGTTTTGTCTCCCGCCTCTGTCGAGAATCCTGTCAGGGTG-CTAGAGTTGAGTGTCTTG
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGTGAC-AGAGTTGAGTGTCTTG
* * * *
1883200 TAGTAGCAGTTGAATCTATATCCTC
65 TAGTAACAGGTGAAACTATGTCCTC
* * * * * * * * *
1883225 GGTGGAGCTTTTGTCTCCCGATTCTGCCGAGAATACTGTCAGGTTGATAGAGTCGAGTGTCTTGT
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGTGACAGAGTTGAGTGTCTTGT
*
1883290 AGTAACAGGTGAAACCATGTCGCT-
66 AGTAACAGGTGAAACTATGTC-CTC
* * * * *
1883314 -GTCTAGG--TTGTCTTCCGACTCTACCGAGACTCCTGAT-AGGATGACAGAGTTGTGTGTCATG
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTG-TCAGGGTGACAGAGTTGAGTGTCTTG
* *
1883375 TAGTAACAGGTGAAACTATATCCCC
65 TAGTAACAGGTGAAACTATGTCCTC
* * * * * *
1883400 GGTCGAGGTTTTGTCCCCCGGCTCTACAGAGACTCCTGTTA-GGTGGACAAAGTTGAGTGTTTTG
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGT-GACAGAGTTGAGTGTCTTG
* * *
1883464 -CGTTAACAAGTGAAACTGTGTCC-C
65 TAG-TAACAGGTGAAACTATGTCCTC
** * * * * * * *
1883488 TTTTGAGCTTTTGTCTCCCGACTCTATCAAGACTCCTATTAGGTTGACAGAGTTGAGTGTCTTGT
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGTGACAGAGTTGAGTGTCTTGT
* *
1883553 AGTAACAGGTGAAACCATGTCCTA
66 AGTAACAGGTGAAACTATGTCCTC
* * * ** * * *
1883577 GGTTGAGGTTTTGTCTCCTGACTCTACTGAGACTATTGT-AGGTTGACAGAATT--GTG--ATGT
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGTGACAGAGTTGAGTGTCTTGT
*
1883637 AGTAACAGGTGAAACCATGTTCCT-
66 AGTAACAGGTGAAACTATG-TCCTC
* ** ** * * * * * **
1883661 GGTCGAAGTTTCATCTCCTAACTCTACCGAGACTCTTATTAGGTTGATAGAGTTGAGTAACTTGT
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGTGACAGAGTTGAGTGTCTTGT
* * *
1883726 AGTAACAAGCGAAACCATGT-CTCC
66 AGTAACAGGTGAAACTATGTCCT-C
* * * * * * * * * * * *
1883750 TGTCAAGTTTTTGTTTCCCTACTTTACCGAGACTCATATTAGGTTGACAGAGTTGAGTGTTTTAT
1 GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGTGACAGAGTTGAGTGTCTTGT
* **
1883815 ACTAACAGGTG-AACCGTGTCC-C
66 AGTAACAGGTGAAACTATGTCCTC
* * ** * * * * * *
1883837 TGGTCAAGGTTCTGTCTCCTAACTCTACCAAGAATCCTATCAGGTTGACAGAGTTGAATTTCTTG
1 -GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGTGACAGAGTTGAGTGTCTTG
*
1883902 TAGTAACAGGTGAAACCATGT
65 TAGTAACAGGTGAAACTATGT
1883923 GAAACTAAAG
Statistics
Matches: 621, Mismatches: 137, Indels: 55
0.76 0.17 0.07
Matches are distributed among these distances:
84 53 0.09
85 17 0.03
86 78 0.13
87 13 0.02
88 171 0.28
89 287 0.46
90 2 0.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (89 bp):
GGTCGAGGTTTTGTCTCCCGACTCTACCGAGACTCCTGTCAGGGTGACAGAGTTGAGTGTCTTGT
AGTAACAGGTGAAACTATGTCCTC
Found at i:1883556 original size:177 final size:175
Alignment explanation
Indices: 1883184--1883922 Score: 600
Period size: 177 Copynumber: 4.2 Consensus size: 175
1883174 TCAGGGTGCT
* * * * * * * * *
1883184 AGAGTTGAGTGTCTTGTAGTAGCAGTTGAATCTATATCCTCGGTGGAGCTTTTGTCTCCCGATTC
1 AGAGTTGAGTGTCTTGTAGTAACAGGTGAAACCATGTCCCCGGTCGAGGTTTTGTCTCCCGACTC
* * * * * * * * *
1883249 TGCCGAGAAT-ACTGTCAGGTTGATAGAGTCGAGTGTCTTGTAGTAACAGGTGAAACCATGTCGC
66 TACAGAGACTCA-TGTTAGGTTGACAAAGTTGAGTGT-TT-TAGTAACAGGTGAAACCGTGTCCC
* * * * * *
1883313 T-GTCTAG-GTTGTCTTCCGACTCTACCGAGACTCCTGA-TAGGATGAC
128 TGGTCGAGTTTTGTCTCCCAACTCTACCAAGACTCCT-ATTAGGTTGAC
* * * * * *
1883359 AGAGTTGTGTGTCATGTAGTAACAGGTGAAACTATATCCCCGGTCGAGGTTTTGTCCCCCGGCTC
1 AGAGTTGAGTGTCTTGTAGTAACAGGTGAAACCATGTCCCCGGTCGAGGTTTTGTCTCCCGACTC
* * * * *
1883424 TACAGAGACTCCTGTTAGGTGGACAAAGTTGAGTGTTTTGCGTTAACAAGTGAAACTGTGTCCCT
66 TACAGAGACTCATGTTAGGTTGACAAAGTTGAGTGTTTT-AG-TAACAGGTGAAACCGTGTCCCT
* * * *
1883489 -TTTGAGCTTTTGTCTCCCGACTCTATCAAGACTCCTATTAGGTTGAC
129 GGTCGAG-TTTTGTCTCCCAACTCTACCAAGACTCCTATTAGGTTGAC
** * *
1883536 AGAGTTGAGTGTCTTGTAGTAACAGGTGAAACCATGTCCTAGGTTGAGGTTTTGTCTCCTGACTC
1 AGAGTTGAGTGTCTTGTAGTAACAGGTGAAACCATGTCCCCGGTCGAGGTTTTGTCTCCCGACTC
* * * * *
1883601 TACTGAGACT-AT-TGTAGGTTGACAGAA-TT--GTGATGTAGTAACAGGTGAAACCATGTTCCT
66 TACAGAGACTCATGT-TAGGTTGACA-AAGTTGAGTGTTTTAGTAACAGGTGAAACCGTGTCCCT
** * * * *
1883661 GGTCGAAGTTTCATCTCCTAACTCTACCGAGACTCTTATTAGGTTGAT
129 GGTCG-AGTTTTGTCTCCCAACTCTACCAAGACTCCTATTAGGTTGAC
** * * * * * * * * *
1883709 AGAGTTGAGTAACTTGTAGTAACAAGCGAAACCATGTCTCCTGTCAAGTTTTTGTTTCCCTACTT
1 AGAGTTGAGTGTCTTGTAGTAACAGGTGAAACCATGTCCCCGGTCGAGGTTTTGTCTCCCGACTC
* * * *
1883774 TACCGAGACTCATATTAGGTTGACAGAGTTGAGTGTTTTATACTAACAGGTG-AACCGTGTCCCT
66 TACAGAGACTCATGTTAGGTTGACAAAGTTGAGTG-TTT-TAGTAACAGGTGAAACCGTGTCCCT
* * * * *
1883838 GGTCAAGGTTCTGTCTCCTAACTCTACCAAGAATCCTATCAGGTTGAC
129 GGTCGA-GTTTTGTCTCCCAACTCTACCAAGACTCCTATTAGGTTGAC
* *
1883886 AGAGTTGAATTTCTTGTAGTAACAGGTGAAACCATGT
1 AGAGTTGAGTGTCTTGTAGTAACAGGTGAAACCATGT
1883923 GAAACTAAAG
Statistics
Matches: 447, Mismatches: 99, Indels: 34
0.77 0.17 0.06
Matches are distributed among these distances:
172 18 0.04
173 96 0.21
174 24 0.05
175 103 0.23
176 17 0.04
177 178 0.40
178 11 0.02
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (175 bp):
AGAGTTGAGTGTCTTGTAGTAACAGGTGAAACCATGTCCCCGGTCGAGGTTTTGTCTCCCGACTC
TACAGAGACTCATGTTAGGTTGACAAAGTTGAGTGTTTTAGTAACAGGTGAAACCGTGTCCCTGG
TCGAGTTTTGTCTCCCAACTCTACCAAGACTCCTATTAGGTTGAC
Found at i:1883728 original size:173 final size:173
Alignment explanation
Indices: 1883508--1883922 Score: 464
Period size: 173 Copynumber: 2.4 Consensus size: 173
1883498 TTGTCTCCCG
* *
1883508 ACTCTATCAAGACTCCTATTAGGTTGACAGAGTTGAGTGTCTTGTAGTAACAGGTGAAACCATGT
1 ACTCTACCAAGACTCCTATTAGGTTGACAGAGTTGAGTATCTTGTAGTAACAGGTGAAACCATGT
** *
1883573 CCTAGGTTGAGGTTTTGTCT-CCTGACTCTACTGAGACT-AT-TGTAGGTTGACAGAATT-GTG-
66 CCT--GTCAAGGTTTTGTCTCCCT-ACTCTACCGAGACTCATAT-TAGGTTGACAGAATTAGTGT
* * * *
1883633 ATGTAGTAACAGGTGAAACCATGTTCCTGGTCGAAGTTTC-ATCTCCTA
127 ATATACTAACAGGTG-AACCATGTCCCTGGTC-AAGGTTCTATCTCCTA
* * * * * *
1883681 ACTCTACCGAGACTCTTATTAGGTTGATAGAGTTGAGTAACTTGTAGTAACAAGCGAAACCATGT
1 ACTCTACCAAGACTCCTATTAGGTTGACAGAGTTGAGTATCTTGTAGTAACAGGTGAAACCATG-
* * * *
1883746 CTCCTGTCAAGTTTTTGTTTCCCTACTTTACCGAGACTCATATTAGGTTGACAGAGTTGAGTGTT
65 -TCCTGTCAAGGTTTTGTCTCCCTACTCTACCGAGACTCATATTAGGTTGACAGAATT-AGTG-T
* * *
1883811 TTATACTAACAGGTGAACCGTGTCCCTGGTCAAGGTTCTGTCTCCTA
127 ATATACTAACAGGTGAACCATGTCCCTGGTCAAGGTTCTATCTCCTA
* * * *
1883858 ACTCTACCAAGAATCCTATCAGGTTGACAGAGTTGAATTTCTTGTAGTAACAGGTGAAACCATGT
1 ACTCTACCAAGACTCCTATTAGGTTGACAGAGTTGAGTATCTTGTAGTAACAGGTGAAACCATGT
1883923 GAAACTAAAG
Statistics
Matches: 200, Mismatches: 32, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
173 79 0.40
174 19 0.09
175 6 0.03
176 9 0.05
177 75 0.38
178 12 0.06
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (173 bp):
ACTCTACCAAGACTCCTATTAGGTTGACAGAGTTGAGTATCTTGTAGTAACAGGTGAAACCATGT
CCTGTCAAGGTTTTGTCTCCCTACTCTACCGAGACTCATATTAGGTTGACAGAATTAGTGTATAT
ACTAACAGGTGAACCATGTCCCTGGTCAAGGTTCTATCTCCTA
Found at i:1893087 original size:12 final size:13
Alignment explanation
Indices: 1893072--1893100 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1893062 GATTCATATT
1893072 TAATTTA-TTTAA
1 TAATTTATTTTAA
1893084 TAATTTATTTTAA
1 TAATTTATTTTAA
1893097 TAAT
1 TAAT
1893101 AAATAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TAATTTATTTTAA
Found at i:1897126 original size:3 final size:3
Alignment explanation
Indices: 1897118--1897154 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
1897108 AGTGTTATAT
1897118 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1897155 AGGAAATTGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1899040 original size:151 final size:150
Alignment explanation
Indices: 1898726--1899067 Score: 349
Period size: 151 Copynumber: 2.3 Consensus size: 150
1898716 TCAGCCAAAT
1898726 TTTTGGAAAA-TTTTTATTATACCCTTTAAAATTTTTAAAAAAATTCAATTAGCTCCCTGGAAAT
1 TTTT-GAAAATTTTTTATTATACCCTTTAAAATTTTTAAAAAAATTCAATTAGCTCCCTGGAAAT
* * * **
1898790 TTTTAAAAATTTCATTAATGCTTTCGATATTTTTAAAAATGTTAATTAAATCCTAAAATTTTTGT
65 TTTTAAAAATTTCA-TAATGCTTTCGAAAATTTTAAAAATGTTAATTAAACCCTAAAAGCTTTGT
1898855 AAATTCTTATCAAGACCTTAAA
129 AAATTCTTATCAAGACCTTAAA
* * * * ** * * * *
1898877 ATTTGGAGATTTTTTATTATGCCCTTTAATTTTTTTAAAAATATTTAATTAGCTCCGTTGAAATT
1 TTTTGAAAATTTTTTATTATACCCTTTAAAATTTTTAAAAAAATTCAATTAGCTCCCTGGAAATT
* *
1898942 TTTAAAAA-TTC-TAATAGCCTTTC-AAAATTTTAAAAATTTTAA-TAAGACCCTCCAAAGCTTT
66 TTTAAAAATTTCATAAT-G-CTTTCGAAAATTTTAAAAATGTTAATTAA-ACCCT-AAAAGCTTT
* *
1899003 -TAAATTTCTTATTAAGATCTTAAA
127 GTAAA-TTCTTATCAAGACCTTAAA
* * * *
1899027 TTTATGAAAA--TTTTAATAAACTCTTTAAATTTTTTAAAAAA
1 TTT-TGAAAATTTTTTATTATACCCTTTAAAATTTTTAAAAAA
1899068 TTTAAATAAA
Statistics
Matches: 156, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
148 7 0.04
149 50 0.32
150 36 0.23
151 63 0.40
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.44
Consensus pattern (150 bp):
TTTTGAAAATTTTTTATTATACCCTTTAAAATTTTTAAAAAAATTCAATTAGCTCCCTGGAAATT
TTTAAAAATTTCATAATGCTTTCGAAAATTTTAAAAATGTTAATTAAACCCTAAAAGCTTTGTAA
ATTCTTATCAAGACCTTAAA
Found at i:1902883 original size:23 final size:23
Alignment explanation
Indices: 1902838--1902883 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
1902828 ATTATATTAA
* * *
1902838 AATTAAAATTAAAATATAAATAT
1 AATTAAAAATAAAAAACAAATAT
*
1902861 AATTAAAAATAAAAAACATATAT
1 AATTAAAAATAAAAAACAAATAT
1902884 TTATTATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
AATTAAAAATAAAAAACAAATAT
Found at i:1904942 original size:14 final size:14
Alignment explanation
Indices: 1904921--1904957 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1904911 AAATTATCTT
1904921 ATTTTTTTTCAAATA
1 ATTTTTTTTC-AATA
*
1904936 ATTTTTTTTCAATG
1 ATTTTTTTTCAATA
1904950 ATTTTTTT
1 ATTTTTTT
1904958 ATGCTATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (14 bp):
ATTTTTTTTCAATA
Found at i:1907001 original size:93 final size:93
Alignment explanation
Indices: 1906842--1907031 Score: 326
Period size: 93 Copynumber: 2.0 Consensus size: 93
1906832 AGCCGCCGCA
* *
1906842 GCGAGGTTCGCGAACTCGGAGCCTTCGACTATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
1 GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
*
1906907 GGAGTCACCGTCGCCGTCAGTTTCGGAC
66 GGAATCACCGTCGCCGTCAGTTTCGGAC
* *
1906935 GCGAGGTTTGCAAACTTGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
1 GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
*
1907000 GGAATCACCGTCGCCGTCAGTTTCGTAC
66 GGAATCACCGTCGCCGTCAGTTTCGGAC
1907028 GCGA
1 GCGA
1907032 CGGTACAATT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (93 bp):
GCGAGGTTCGCAAACTCGGAGCCTTCGACGATCCATTCGGAGCAAACTGATTCTGCGTTCCAAAT
GGAATCACCGTCGCCGTCAGTTTCGGAC
Found at i:1916167 original size:30 final size:30
Alignment explanation
Indices: 1916110--1916167 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
1916100 TGTTGCTGCT
* *
1916110 GCTGCTGCTGTAGAGGTGGCTGAGGCTGAG
1 GCTGCTGCTGAAGAGGTGACTGAGGCTGAG
* * *
1916140 GCTGCTGTTGAAGATGTGACTGTGGCTG
1 GCTGCTGCTGAAGAGGTGACTGAGGCTG
1916168 CAGCTGTGAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.14, C:0.16, G:0.43, T:0.28
Consensus pattern (30 bp):
GCTGCTGCTGAAGAGGTGACTGAGGCTGAG
Found at i:1920404 original size:8 final size:8
Alignment explanation
Indices: 1920386--1920417 Score: 50
Period size: 7 Copynumber: 4.2 Consensus size: 8
1920376 TTTAATTTGG
1920386 TTTTTAA-
1 TTTTTAAT
1920393 TTTTTAAT
1 TTTTTAAT
1920401 TTTTT-AT
1 TTTTTAAT
1920408 TTTTTAAT
1 TTTTTAAT
1920416 TT
1 TT
1920418 GAGTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 14 0.61
8 9 0.39
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTAAT
Found at i:1920406 original size:15 final size:15
Alignment explanation
Indices: 1920386--1920417 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1920376 TTTAATTTGG
1920386 TTTTTAATTTTTAAT
1 TTTTTAATTTTTAAT
*
1920401 TTTTTATTTTTTAAT
1 TTTTTAATTTTTAAT
1920416 TT
1 TT
1920418 GAGTTTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTAATTTTTAAT
Found at i:1920966 original size:21 final size:21
Alignment explanation
Indices: 1920938--1920978 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1920928 TTTTTAAAAT
1920938 AAATATTAAT-ATTTTAATTG
1 AAATATTAATGATTTTAATTG
*
1920958 AAATAATTAATGGTTTTAATT
1 AAAT-ATTAATGATTTTAATT
1920979 ATTTTTTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 8 0.44
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (21 bp):
AAATATTAATGATTTTAATTG
Found at i:1921224 original size:73 final size:71
Alignment explanation
Indices: 1921138--1921288 Score: 203
Period size: 73 Copynumber: 2.1 Consensus size: 71
1921128 TTTAACCATT
** *
1921138 GCGCGTGCTACTTCACGCGTGGCGTAATGCAATTAGAGGAAAGTTAAAATTGGCACCAAATTTTG
1 GCGCGTGAGACTTCACGAGTGGCGTAATGCAATTAGAGGAAAGTTAAAATTGGCACCAAA--TTG
1921203 GGAGATGC
64 GGAGATGC
* * * * *
1921211 GCGCGTGAGACTTCACGATTGGTGTAATGCAATTGGCGGAAAGTTAAAATTGGCACCGAATTGGG
1 GCGCGTGAGACTTCACGAGTGGCGTAATGCAATTAGAGGAAAGTTAAAATTGGCACCAAATTGGG
*
1921276 ATATGC
66 AGATGC
1921282 GCGCGTG
1 GCGCGTG
1921289 CGGCATTCTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
71 17 0.25
73 52 0.75
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (71 bp):
GCGCGTGAGACTTCACGAGTGGCGTAATGCAATTAGAGGAAAGTTAAAATTGGCACCAAATTGGG
AGATGC
Found at i:1926088 original size:27 final size:26
Alignment explanation
Indices: 1926058--1926117 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
1926048 AATCATTAAA
1926058 ATTTAATGTAAAGTAAAAAATT-TAATT
1 ATTTAATGTAAA-TAAAAAATTAT-ATT
* * *
1926085 ATTTATTTTATATAAAAAATTATATT
1 ATTTAATGTAAATAAAAAATTATATT
1926111 ATTTAAT
1 ATTTAAT
1926118 AAATATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (26 bp):
ATTTAATGTAAATAAAAAATTATATT
Found at i:1926115 original size:21 final size:20
Alignment explanation
Indices: 1926081--1926120 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
1926071 TAAAAAATTT
1926081 AATTATTTATTTTATATAAAA
1 AATTATTTATTTTA-ATAAAA
1926102 AATTATATTA-TTTAATAAA
1 AATTAT-TTATTTTAATAAA
1926121 TATTAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 10 0.56
22 3 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATTATTTATTTTAATAAAA
Found at i:1926123 original size:26 final size:26
Alignment explanation
Indices: 1926071--1926123 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
1926061 TAATGTAAAG
* **
1926071 TAAAAAATTTAATTATTTATTTTATA
1 TAAAAAATTTAATTATTTAATAAATA
1926097 TAAAAAA-TTATATTATTTAATAAATA
1 TAAAAAATTTA-ATTATTTAATAAATA
1926123 T
1 T
1926124 TAATTTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
TAAAAAATTTAATTATTTAATAAATA
Found at i:1934984 original size:2 final size:2
Alignment explanation
Indices: 1934977--1935001 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1934967 AGTCTTACTT
1934977 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1935002 CATTTTCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1935665 original size:16 final size:16
Alignment explanation
Indices: 1935644--1935682 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
1935634 GCAATAATGG
*
1935644 AATTAATGCATTAATA
1 AATTAATGCATAAATA
*
1935660 AATTAATACATAAATA
1 AATTAATGCATAAATA
1935676 AA-TAATG
1 AATTAATG
1935683 TTTTTGTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (16 bp):
AATTAATGCATAAATA
Found at i:1948518 original size:30 final size:28
Alignment explanation
Indices: 1948484--1948546 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 28
1948474 AAGTTGTAAT
*
1948484 TAAAATT-TTAAATTTTAATAAATATAAAAC
1 TAAAATTATTAAA--TTAAAAAATAT-AAAC
1948514 TAAAAATTATTAAATTAAAAAATATAAAC
1 T-AAAATTATTAAATTAAAAAATATAAAC
1948543 TAAA
1 TAAA
1948547 CCCAAAACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
28 3 0.10
29 5 0.17
30 11 0.37
31 6 0.20
32 5 0.17
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (28 bp):
TAAAATTATTAAATTAAAAAATATAAAC
Found at i:1958056 original size:28 final size:28
Alignment explanation
Indices: 1958016--1958071 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
1958006 TTTACTATTG
1958016 GAAGCTTATTCAAATAATGGCAGATTAT
1 GAAGCTTATTCAAATAATGGCAGATTAT
1958044 GAAGCTTATTCAAATAATGGCAGATTAT
1 GAAGCTTATTCAAATAATGGCAGATTAT
1958072 TTACTTTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (28 bp):
GAAGCTTATTCAAATAATGGCAGATTAT
Found at i:1981723 original size:59 final size:59
Alignment explanation
Indices: 1981585--1981731 Score: 152
Period size: 59 Copynumber: 2.5 Consensus size: 59
1981575 TTTTAAGGAT
* * * * * *
1981585 TAACTTGGACAAAAAAAAAGTTTAAGCCTCAATATGAGAACAATTATTAAGTTCAGGTCT
1 TAACTTAGAC-AAAAAAAAGTTTAAGCCCCAATATAAGAACAATTATCAAGTTCAGGGCG
* * * *
1981645 TAACTTTGATAAAAAAAAGTTTAAGCCCCAATGTAAGAATAATTATCAAGCTT-AGGGCG
1 TAACTTAGACAAAAAAAAGTTTAAGCCCCAATATAAGAACAATTATCAAG-TTCAGGGCG
* * *
1981704 TAACTTAGACCAAATAAAGTTCAAGCCC
1 TAACTTAGACAAAAAAAAGTTTAAGCCC
1981732 TACTTTAGGA
Statistics
Matches: 72, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
59 62 0.86
60 10 0.14
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.27
Consensus pattern (59 bp):
TAACTTAGACAAAAAAAAGTTTAAGCCCCAATATAAGAACAATTATCAAGTTCAGGGCG
Found at i:1983463 original size:16 final size:16
Alignment explanation
Indices: 1983439--1983470 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1983429 TGTACTTCAC
*
1983439 TATACTTGATTTTGAT
1 TATAATTGATTTTGAT
1983455 TATAATTGATTTTGAT
1 TATAATTGATTTTGAT
1983471 ATTATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.56
Consensus pattern (16 bp):
TATAATTGATTTTGAT
Found at i:1988130 original size:16 final size:16
Alignment explanation
Indices: 1988078--1988133 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
1988068 ATTCTAATTT
*
1988078 TTCAAATTTTTTATGC
1 TTCAATTTTTTTATGC
*
1988094 TTTCAATTTGACTTT-TG-
1 -TTCAATTT--TTTTATGC
1988111 TTCAATTTTTTTATGC
1 TTCAATTTTTTTATGC
1988127 TTCAATT
1 TTCAATT
1988134 ATTCTCTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
14 3 0.09
15 2 0.06
16 15 0.47
17 7 0.22
18 2 0.06
19 3 0.09
ACGTcount: A:0.21, C:0.12, G:0.07, T:0.59
Consensus pattern (16 bp):
TTCAATTTTTTTATGC
Found at i:1995004 original size:38 final size:38
Alignment explanation
Indices: 1994926--1995004 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
1994916 AAAAATTATA
* *
1994926 TTTAATACAATAAAACATTTATTATATTTATTTATGTT
1 TTTAATACAATAAAACATTTATTATATTTATGTATATT
* * *
1994964 TTTAATATAATAAAATATTTATTTTATTTATGGTA-ATT
1 TTTAATACAATAAAACATTTATTATATTTAT-GTATATT
1995002 TTT
1 TTT
1995005 TTTAATATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 33 0.94
39 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.56
Consensus pattern (38 bp):
TTTAATACAATAAAACATTTATTATATTTATGTATATT
Found at i:1996486 original size:29 final size:29
Alignment explanation
Indices: 1996441--1996505 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
1996431 TTCGGTCACT
*
1996441 CAACTATGAAAAATTATAAAATGATCATC
1 CAACTATGAAAAATTATAAAACGATCATC
* *
1996470 CAACTAT-AAAAAGTTATAAAACGGTCATT
1 CAACTATGAAAAA-TTATAAAACGATCATC
1996499 CAACTAT
1 CAACTAT
1996506 TCAATTTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 5 0.16
29 27 0.84
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (29 bp):
CAACTATGAAAAATTATAAAACGATCATC
Found at i:2000441 original size:3 final size:3
Alignment explanation
Indices: 2000433--2000480 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
2000423 GAATTTGACC
2000433 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
2000481 CCTGAATAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:2012000 original size:26 final size:26
Alignment explanation
Indices: 2011944--2012003 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
2011934 GTGAACAAAT
*
2011944 TTTATAATTTTTTAAATAATTATTAGT
1 TTTA-AATTTTTTAAATAATTATTAGC
2011971 TTTAAATTTTTT-AATAATTTATTTA-C
1 TTTAAATTTTTTAAATAA-TTA-TTAGC
2011997 TTTAAAT
1 TTTAAAT
2012004 CGATCGAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 5 0.17
26 18 0.60
27 7 0.23
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTAAATTTTTTAAATAATTATTAGC
Found at i:2021016 original size:2 final size:2
Alignment explanation
Indices: 2021009--2021035 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2020999 TAATTTTATC
2021009 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
2021036 AAAATTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2021679 original size:2 final size:2
Alignment explanation
Indices: 2021672--2021698 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2021662 TAACATTGTT
2021672 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2021699 GATAATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2030752 original size:22 final size:22
Alignment explanation
Indices: 2030727--2030771 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
2030717 ATTTAAACAT
*
2030727 AAAATAAAAAAGAA-AAAAGAA
1 AAAAAAAAAAAGAAGAAAAGAA
* *
2030748 AAAAAGAAGAAGAAGAAAAGAA
1 AAAAAAAAAAAGAAGAAAAGAA
2030770 AA
1 AA
2030772 GAATCGTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAAAGAAGAAAAGAA
Found at i:2033375 original size:11 final size:11
Alignment explanation
Indices: 2033351--2033385 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
2033341 TTATAGATTA
2033351 TTTTTAAT--T
1 TTTTTAATAAT
2033360 TTTTTAATAAT
1 TTTTTAATAAT
2033371 TTTTTAATAAT
1 TTTTTAATAAT
2033382 TTTT
1 TTTT
2033386 ATATATCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTTAATAAT
Found at i:2033485 original size:21 final size:21
Alignment explanation
Indices: 2033459--2033501 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
2033449 CTTCAACTAC
*
2033459 ACTTACTGTTCCTATTATCTA
1 ACTTACTGTTCCTATTAGCTA
2033480 ACTTACTGTTCCTATTAGCTA
1 ACTTACTGTTCCTATTAGCTA
2033501 A
1 A
2033502 TCAATGATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (21 bp):
ACTTACTGTTCCTATTAGCTA
Found at i:2042502 original size:46 final size:47
Alignment explanation
Indices: 2042394--2042503 Score: 127
Period size: 46 Copynumber: 2.4 Consensus size: 47
2042384 CCGGGATAAG
* * *
2042394 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
2042441 CACAAAGTACTTCATCGGAACAAATCC-AAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
2042487 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
2042504 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.02
46 26 0.49
47 26 0.49
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:2050482 original size:4 final size:4
Alignment explanation
Indices: 2050469--2050503 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
2050459 TAAAATTTCC
2050469 CTTT -TTT CTTT CTTT CTTT CTTT C-TT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
2050504 ACGTTTGCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 6 0.21
4 23 0.79
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:2053148 original size:23 final size:23
Alignment explanation
Indices: 2053122--2053169 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
2053112 TAAAAGTTAC
*
2053122 AAAAATTA-TTAAAATTTAATAA
1 AAAAACTACTTAAAATTTAATAA
*
2053144 AAAAACTACTTAAAATTTATTAA
1 AAAAACTACTTAAAATTTAATAA
2053167 AAA
1 AAA
2053170 CTAATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (23 bp):
AAAAACTACTTAAAATTTAATAA
Found at i:2053532 original size:9 final size:9
Alignment explanation
Indices: 2053514--2053592 Score: 55
Period size: 9 Copynumber: 9.4 Consensus size: 9
2053504 CCATTTTATA
*
2053514 TTTTACAAT
1 TTTTATAAT
2053523 TTTTATAAT
1 TTTTATAAT
2053532 TTTTA-AAT
1 TTTTATAAT
2053540 ATTTT-T--T
1 -TTTTATAAT
* *
2053547 TATTA-AAA
1 TTTTATAAT
*
2053555 TTTAATAAT
1 TTTTATAAT
*
2053564 TTCTATAAT
1 TTTTATAAT
2053573 TTTTAT--T
1 TTTTATAAT
2053580 TTTTATAAT
1 TTTTATAAT
2053589 TTTT
1 TTTT
2053593 TGTCACATAT
Statistics
Matches: 53, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
6 3 0.06
7 8 0.15
8 6 0.11
9 36 0.68
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:2066621 original size:6 final size:7
Alignment explanation
Indices: 2066603--2066630 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
2066593 CATGGTGGAC
2066603 CAAAAAG
1 CAAAAAG
2066610 CAAAAAG
1 CAAAAAG
2066617 CAAAAAG
1 CAAAAAG
2066624 CAAAAAG
1 CAAAAAG
2066631 AGAAACTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.14, G:0.14, T:0.00
Consensus pattern (7 bp):
CAAAAAG
Found at i:2066715 original size:28 final size:28
Alignment explanation
Indices: 2066684--2066739 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
2066674 AAAAAGGAAG
2066684 TTGATTTCCAACCACAAAAACAACCAAA
1 TTGATTTCCAACCACAAAAACAACCAAA
2066712 TTGATTTCCAACCACAAAAACAACCAAA
1 TTGATTTCCAACCACAAAAACAACCAAA
2066740 CGTTTATAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.29, G:0.04, T:0.18
Consensus pattern (28 bp):
TTGATTTCCAACCACAAAAACAACCAAA
Found at i:2066787 original size:33 final size:33
Alignment explanation
Indices: 2066743--2066815 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
2066733 AACCAAACGT
* * *
2066743 TTATAGAGTGAGAGTACCTATGAGATCCCTGTA
1 TTATAGGGTGAGACTACCCATGAGATCCCTGTA
*
2066776 TTATAGGGTGAGACTACCCATGAGATCCTTGTA
1 TTATAGGGTGAGACTACCCATGAGATCCCTGTA
2066809 TTATAGG
1 TTATAGG
2066816 AGTTGTATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (33 bp):
TTATAGGGTGAGACTACCCATGAGATCCCTGTA
Found at i:2076186 original size:29 final size:30
Alignment explanation
Indices: 2076074--2076184 Score: 86
Period size: 31 Copynumber: 3.7 Consensus size: 30
2076064 GGGCTTAATC
2076074 TTTACAAATGTGCTCAAATAAAGGTCAAACTT
1 TTTA-AAATGTGCTCAAATAAAGGT-AAACTT
* * *
2076106 TTTAAAAT-AG-TCAAATAAGGGCTAAGCCTT
1 TTTAAAATGTGCTCAAATAAAGG-TAA-ACTT
* * *
2076136 TTCAAAAATAT--TAAAATAAAGGTAAACTT
1 TT-TAAAATGTGCTCAAATAAAGGTAAACTT
*
2076165 TTTTAAATGTGCTCAAATAA
1 TTTAAAATGTGCTCAAATAA
2076185 GGGCTTCTCA
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
28 5 0.08
29 17 0.28
30 17 0.28
31 18 0.30
32 4 0.07
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (30 bp):
TTTAAAATGTGCTCAAATAAAGGTAAACTT
Found at i:2083710 original size:2 final size:2
Alignment explanation
Indices: 2083703--2083750 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
2083693 GGAATTAAAG
2083703 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2083745 AT AT AT
1 AT AT AT
2083751 CGTACGGGAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2092507 original size:18 final size:19
Alignment explanation
Indices: 2092473--2092509 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
2092463 TTTCCATCTT
2092473 TTTAATTGTGCAAAAAAAAA
1 TTTAATTGT-CAAAAAAAAA
2092493 TTTAATTGT-AAAAAAAA
1 TTTAATTGTCAAAAAAAA
2092510 TAAATCACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (19 bp):
TTTAATTGTCAAAAAAAAA
Found at i:2095352 original size:14 final size:14
Alignment explanation
Indices: 2095329--2095366 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
2095319 TTAAAATTCA
*
2095329 AAAAAATAAAAAAT
1 AAAAACTAAAAAAT
*
2095343 AAAAACTAAAACAT
1 AAAAACTAAAAAAT
2095357 AAAAACTAAA
1 AAAAACTAAA
2095367 TCCCAAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAACTAAAAAAT
Found at i:2110459 original size:4 final size:4
Alignment explanation
Indices: 2110442--2110471 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
2110432 TCCCTCCGCA
2110442 CCTC CCTC CTCTC CCTC CCTC CCTC CCTC C
1 CCTC CCTC C-CTC CCTC CCTC CCTC CCTC C
2110472 GGTATGCTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.00, C:0.73, G:0.00, T:0.27
Consensus pattern (4 bp):
CCTC
Found at i:2112546 original size:23 final size:23
Alignment explanation
Indices: 2112519--2112563 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
2112509 GCCCAAACCA
*
2112519 TAATTATCCAAAGTGACCAAAAT
1 TAATTATCCAAACTGACCAAAAT
2112542 TAATTATCCAAACTGACCAAAA
1 TAATTATCCAAACTGACCAAAA
2112564 ATTGAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (23 bp):
TAATTATCCAAACTGACCAAAAT
Done.