Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 80 of 328
Found at i:22047694 original size:29 final size:28
Alignment explanation
Indices: 22047662--22047735 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
22047652 GATTCAAGCC
* *
22047662 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* *
22047691 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
22047720 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
22047736 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:22055664 original size:29 final size:28
Alignment explanation
Indices: 22055632--22055705 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
22055622 GATTCAAGCC
* *
22055632 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* *
22055661 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
22055690 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
22055706 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:22063250 original size:23 final size:23
Alignment explanation
Indices: 22063224--22063271 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
22063214 AATCAAATTC
*
22063224 GTTAATTTTGTAGCTTATCACAT
1 GTTAATTTTATAGCTTATCACAT
*
22063247 GTTATTTTTATAGCTTATCACAT
1 GTTAATTTTATAGCTTATCACAT
22063270 GT
1 GT
22063272 GTATCCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (23 bp):
GTTAATTTTATAGCTTATCACAT
Found at i:22071534 original size:40 final size:40
Alignment explanation
Indices: 22071432--22071615 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
22071422 AAATTGAATG
* * * * *
22071432 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
22071472 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
22071512 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
22071552 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
22071592 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22071616 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:22071640 original size:80 final size:80
Alignment explanation
Indices: 22071474--22071660 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
22071464 TGAAAATTAT
* * *
22071474 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
22071539 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
22071554 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
22071618 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
22071635 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
22071661 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:22073624 original size:26 final size:24
Alignment explanation
Indices: 22073594--22073643 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
22073584 AAATAAAAAA
*
22073594 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
22073620 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
22073644 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:22074500 original size:13 final size:13
Alignment explanation
Indices: 22074482--22074521 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
22074472 GGAGTAATCA
22074482 CACACGGGCGTGT
1 CACACGGGCGTGT
*
22074495 CACACGGGCATGT
1 CACACGGGCGTGT
22074508 CACACGGGCGTGT
1 CACACGGGCGTGT
22074521 C
1 C
22074522 CCTGCCGAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:22075553 original size:3 final size:3
Alignment explanation
Indices: 22075545--22075593 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
22075535 ATCACGCATC
22075545 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22075593 A
1 A
22075594 TTATTATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:22075598 original size:3 final size:3
Alignment explanation
Indices: 22075592--22075650 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
22075582 ATAATAATAA
22075592 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
22075640 TAT TAT TAT TA
1 TAT TAT TAT TA
22075651 AGATATTGGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:22078121 original size:25 final size:25
Alignment explanation
Indices: 22078084--22078184 Score: 132
Period size: 25 Copynumber: 4.0 Consensus size: 25
22078074 GCGGACACAC
*
22078084 TACAGCTCATATGAGCTTTCCGATT
1 TACAGCTCGTATGAGCTTTCCGATT
* * *
22078109 TACATCTTGTATGAGCTTTTCGATT
1 TACAGCTCGTATGAGCTTTCCGATT
*
22078134 TACAGCTCGTATGAGCTTCCCGATT
1 TACAGCTCGTATGAGCTTTCCGATT
*
22078159 TATAGCTCGTATGAGC-TTCACGATT
1 TACAGCTCGTATGAGCTTTC-CGATT
22078184 T
1 T
22078185 GTAGCTCATA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
24 2 0.03
25 63 0.97
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.39
Consensus pattern (25 bp):
TACAGCTCGTATGAGCTTTCCGATT
Found at i:22078183 original size:50 final size:50
Alignment explanation
Indices: 22078084--22078223 Score: 163
Period size: 50 Copynumber: 2.8 Consensus size: 50
22078074 GCGGACACAC
* * * **
22078084 TACAGCTCATATGAGCTTTCCGATTTACATCTTGTATGAGCTTTTCGATT
1 TACAGCTCATATGAGCTTACCGATTTATAGCTTGTATGAGCTTCACGATT
* * *
22078134 TACAGCTCGTATGAGCTTCCCGATTTATAGCTCGTATGAGCTTCACGATT
1 TACAGCTCATATGAGCTTACCGATTTATAGCTTGTATGAGCTTCACGATT
** * * *
22078184 TGTAGCTCATAAGAGCATACCGATTCATAGCTTGTATGAG
1 TACAGCTCATATGAGCTTACCGATTTATAGCTTGTATGAG
22078224 TATACATGTA
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 75 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (50 bp):
TACAGCTCATATGAGCTTACCGATTTATAGCTTGTATGAGCTTCACGATT
Found at i:22078189 original size:25 final size:25
Alignment explanation
Indices: 22078087--22078223 Score: 116
Period size: 25 Copynumber: 5.5 Consensus size: 25
22078077 GACACACTAC
* *
22078087 AGCTCATATGAGCTTTC-CGATTTAC
1 AGCTCGTATGAGC-TTCACGATTTAT
* * ** *
22078112 ATCTTGTATGAGCTTTTCGATTTAC
1 AGCTCGTATGAGCTTCACGATTTAT
*
22078137 AGCTCGTATGAGCTTCCCGATTTAT
1 AGCTCGTATGAGCTTCACGATTTAT
*
22078162 AGCTCGTATGAGCTTCACGATTTGT
1 AGCTCGTATGAGCTTCACGATTTAT
* * * *
22078187 AGCTCATAAGAGCAT-ACCGATTCAT
1 AGCTCGTATGAGCTTCA-CGATTTAT
*
22078212 AGCTTGTATGAG
1 AGCTCGTATGAG
22078224 TATACATGTA
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
24 3 0.03
25 88 0.97
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (25 bp):
AGCTCGTATGAGCTTCACGATTTAT
Found at i:22079502 original size:59 final size:60
Alignment explanation
Indices: 22079435--22079561 Score: 247
Period size: 59 Copynumber: 2.1 Consensus size: 60
22079425 ATGTTGTTAA
22079435 ACATGTTTTTATTTATCATTTAAGGTGCTTAAGGGCATATTGGTTGTCTGTGAATATACT
1 ACATGTTTTTATTTATCATTTAAGGTGCTTAAGGGCATATTGGTTGTCTGTGAATATACT
22079495 -CATGTTTTTATTTATCATTTAAGGTGCTTAAGGGCATATTGGTTGTCTGTGAATATACT
1 ACATGTTTTTATTTATCATTTAAGGTGCTTAAGGGCATATTGGTTGTCTGTGAATATACT
22079554 ACATGTTT
1 ACATGTTT
22079562 AGGGATTGAT
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
59 59 0.89
60 7 0.11
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46
Consensus pattern (60 bp):
ACATGTTTTTATTTATCATTTAAGGTGCTTAAGGGCATATTGGTTGTCTGTGAATATACT
Found at i:22081119 original size:42 final size:42
Alignment explanation
Indices: 22081070--22081186 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 42
22081060 CAAATTGTGG
*
22081070 TATCGTGTAAGACCATGTCTGGGACATTGGCATC-GTATATGA
1 TATCGTGTAAGACCATGTCTGGGACA-TGGCATCAATATATGA
* * * * *
22081112 TTTCGTGTAAGACCCTGTCTAGGACAACGGCATCAATATTTGA
1 TATCGTGTAAGACCATGTCTGGGAC-ATGGCATCAATATATGA
* * * *
22081155 TAACATGTAAGACCATATCTGGGATATGGCAT
1 TATCGTGTAAGACCATGTCTGGGACATGGCAT
22081187 TGTACAAGCT
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
42 34 0.58
43 25 0.42
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (42 bp):
TATCGTGTAAGACCATGTCTGGGACATGGCATCAATATATGA
Found at i:22083518 original size:40 final size:40
Alignment explanation
Indices: 22083454--22083626 Score: 188
Period size: 40 Copynumber: 4.3 Consensus size: 40
22083444 CATGAGCATT
* * * * *
22083454 TGATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
*
22083494 TGATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAG
1 TGATTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG
* *
22083534 TTG-TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAG
1 -TGATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
* * * * *
22083574 TTACTAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 TGATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
*
22083614 TGGTTATATCCGG
1 TGATTATATCCGG
22083627 TTAAATCCCG
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 104 0.93
41 5 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TGATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
Found at i:22083596 original size:80 final size:80
Alignment explanation
Indices: 22083463--22083640 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
22083453 TTGATGATAC
* * * * * *
22083463 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
22083527 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
22083543 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
22083608 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
22083623 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
22083641 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:22088635 original size:55 final size:55
Alignment explanation
Indices: 22088546--22088660 Score: 142
Period size: 55 Copynumber: 2.1 Consensus size: 55
22088536 TATAGCTCTG
* ***
22088546 CGCACGCCCGTGTTATTTTAACAGGTTCGCCCAC-GGTTGCTTGGCACGGGCGTGT
1 CGCACGCCCGTGTTAATTTAACAGGTTCGCCCACGGGTT-AAAGGCACGGGCGTGT
* * * *
22088601 CGCACGCCCTTGTTAATTTGATAGGTTCGGCCACGGGTTAAAGGCACGGGCGTGT
1 CGCACGCCCGTGTTAATTTAACAGGTTCGCCCACGGGTTAAAGGCACGGGCGTGT
22088656 CGCAC
1 CGCAC
22088661 ACCTGTGCTA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
55 47 0.92
56 4 0.08
ACGTcount: A:0.16, C:0.28, G:0.31, T:0.25
Consensus pattern (55 bp):
CGCACGCCCGTGTTAATTTAACAGGTTCGCCCACGGGTTAAAGGCACGGGCGTGT
Found at i:22093252 original size:16 final size:15
Alignment explanation
Indices: 22093219--22093247 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
22093209 ATTTTCTGCG
22093219 TTTATTGTGTGTGAA
1 TTTATTGTGTGTGAA
22093234 TTTA-TGTGTGTGAA
1 TTTATTGTGTGTGAA
22093248 AATTTCGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.52
Consensus pattern (15 bp):
TTTATTGTGTGTGAA
Found at i:22093967 original size:43 final size:43
Alignment explanation
Indices: 22093918--22094177 Score: 294
Period size: 43 Copynumber: 6.0 Consensus size: 43
22093908 TATGTGTTCT
* *
22093918 CGTGTAAGACTACGTCTGGGATGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* *
22093961 CGTGTAAGACCATGCCTGGGACGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
22094004 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* *
22094047 -ATGTAAGACC-CTGTCTGGGACAG-TGGCATCGAAATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTA
* * *
22094089 CATGTAAGACCACGTCTGGGATGTTGGCATTGTACGATATGTG-TGTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCA---T-CGATATGTGAT-TA
* * *** *
22094136 CGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATT
22094178 CCGATATGTG
Statistics
Matches: 187, Mismatches: 19, Indels: 22
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 37 0.20
43 114 0.61
44 3 0.02
46 2 0.01
47 30 0.16
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
Found at i:22094096 original size:85 final size:86
Alignment explanation
Indices: 22093920--22094118 Score: 312
Period size: 85 Copynumber: 2.3 Consensus size: 86
22093910 TGTGTTCTCG
* *
22093920 TGTAAGACTACGTCTGGGATGTTGGCATCGATATGTGATTACGTGTAAGACCATGCCTGGGACGT
1 TGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTACATGTAAGACCATGCCTGGGACGT
* *
22093985 TGGCATCGATATGTGATTACG
66 TGGCATCGAAATGTGATTACA
* * *
22094006 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA-ATGTAAGACCCTGTCTGGGACAG
1 TGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTACATGTAAGACCATGCCTGGGAC-G
22094070 -TGGCATCGAAATGTGATTACA
65 TTGGCATCGAAATGTGATTACA
22094091 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGATGTTGGCAT
22094119 TGTACGATAT
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
85 64 0.62
86 40 0.38
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (86 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTACATGTAAGACCATGCCTGGGACGT
TGGCATCGAAATGTGATTACA
Found at i:22094209 original size:56 final size:56
Alignment explanation
Indices: 22094123--22094411 Score: 393
Period size: 56 Copynumber: 5.2 Consensus size: 56
22094113 TGGCATTGTA
* *
22094123 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
1 CGATATGTGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTC
* * *
22094179 CGATATGTGTGTGTGAATAAGACCACGTTTAATACGTTGGCATCAATATGGGATTC
1 CGATATGTGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTC
* * * * * *
22094235 CGATCTGTGTGT-TCGAGTAAGATCACTTTTAATACGTTGGTATCGATATGTGATTC
1 CGATATGTGTGTGT-GAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTC
* * * * *
22094291 TGATATGTGTGTGCGAATAAGACCATGTTTAATACATTGGCATCAATGTGTGATT-
1 CGATATGTGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTC
* *
22094346 CGATATGTGTGTGTGAGTAAGATCACGTTTAATACTTTGGCATCAATATGTGATTC
1 CGATATGTGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTC
22094402 CGATATGTGT
1 CGATATGTGT
22094412 TTACAAGTAA
Statistics
Matches: 200, Mismatches: 30, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
55 49 0.25
56 151 0.75
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (56 bp):
CGATATGTGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTC
Found at i:22097833 original size:44 final size:45
Alignment explanation
Indices: 22097757--22097842 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
22097747 TCCAATATGT
*
22097757 ATTTTTGTGTAAGACCACGTTTGGAACATTGGCATCG-ATTTACG
1 ATTTATGTGTAAGACCACGTTTGGAACATTGGCATCGTATTTACG
* *
22097801 ATTTATGTGTAAGACCACGTTTGGGACGTTGGCATCGTATTT
1 ATTTATGTGTAAGACCACGTTTGGAACATTGGCATCGTATTT
22097843 GATTTCGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 34 0.89
45 4 0.11
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.37
Consensus pattern (45 bp):
ATTTATGTGTAAGACCACGTTTGGAACATTGGCATCGTATTTACG
Found at i:22097912 original size:43 final size:42
Alignment explanation
Indices: 22097764--22097920 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
22097754 TGTATTTTTG
* * * **
22097764 TGTAAGACCACGTTTGGAACATTGGCATCG-ATTTACGATTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTT--GA-TTACA
* * *
22097808 TGTAAGACCACGTTTGGGACGTTGGCATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
*
22097850 TATAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTACA
* *
22097893 TGTAATACCACGTCAGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
22097921 TATATGAGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 34 0.35
44 29 0.30
45 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
Found at i:22109023 original size:48 final size:46
Alignment explanation
Indices: 22108905--22109025 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 46
22108895 TGATATGTGT
* * * *
22108905 GCTAATGTAAGACATGTCTGGGACATGTATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAA
* * * *
22108951 GCCAGTGCAAGATATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGA-AA
*
22108999 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
22109026 GCGTTAGCTT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
46 31 0.52
47 2 0.03
48 27 0.45
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAA
Found at i:22113228 original size:35 final size:35
Alignment explanation
Indices: 22113189--22113260 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
22113179 GACGGAGAGG
22113189 TGTGTTTGCTAGATGGGAGGGTTTTATTACTTGAC
1 TGTGTTTGCTAGATGGGAGGGTTTTATTACTTGAC
22113224 TGTGTTTGCTAGATGGGAGGGTTTTATTACTTGAC
1 TGTGTTTGCTAGATGGGAGGGTTTTATTACTTGAC
22113259 TG
1 TG
22113261 CATTTCATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.17, C:0.08, G:0.32, T:0.43
Consensus pattern (35 bp):
TGTGTTTGCTAGATGGGAGGGTTTTATTACTTGAC
Found at i:22117861 original size:15 final size:15
Alignment explanation
Indices: 22117841--22117870 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22117831 TGTGTTAGAA
22117841 CACATTCGAGTGGCT
1 CACATTCGAGTGGCT
*
22117856 CACATTCTAGTGGCT
1 CACATTCGAGTGGCT
22117871 ATAGCAGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (15 bp):
CACATTCGAGTGGCT
Found at i:22123640 original size:153 final size:153
Alignment explanation
Indices: 22123437--22123889 Score: 687
Period size: 153 Copynumber: 3.0 Consensus size: 153
22123427 ACTATCCGAG
* * * **
22123437 TTTGTTTTTGAGTTTAATTTGAGATTTCTTAATACTAATTAAAAATTTAAAAATACTATTAAGCT
1 TTTGTTTTTGAGTTTAAATTGAGACTTCTTAATACTAATTAAAAAATTAAAAATGTTATTAAGCT
* * * *
22123502 TGTGAATTACTTAAATCTAGTATTCA-ATTACTCAAATCCAATCACCGTGATAACTACAATAATT
66 TGTGAAATACTTAAATCTAGTATT-AGAATACTCAAATCCAGTCACCGTGATAACTAGAATAATT
* *
22123566 TGTGAGAATACGTATTTCGTATAA
130 TCTGAGAATATGTATTTCGTATAA
*
22123590 TTTGTTTTTGAGTTTAAATTGAAACTTCTTAATACTAATTAAAAAATTAAAAATGTTATTAAGCT
1 TTTGTTTTTGAGTTTAAATTGAGACTTCTTAATACTAATTAAAAAATTAAAAATGTTATTAAGCT
* * *
22123655 TGTGAAATACTTAAATCTAGTATTAGAATACTCAAATCTAGT-AGCAGTGATAATTAGAATAATT
66 TGTGAAATACTTAAATCTAGTATTAGAATACTCAAATCCAGTCA-CCGTGATAACTAGAATAATT
* *
22123719 TCTGAGAATATGTATTTTGTATAG
130 TCTGAGAATATGTATTTCGTATAA
*
22123743 TTTGTTTTTGAGTTTAAATTGAGACTTCTTAATACTAATTAAAAACTTAAAAATGTTATTAAGCT
1 TTTGTTTTTGAGTTTAAATTGAGACTTCTTAATACTAATTAAAAAATTAAAAATGTTATTAAGCT
* *
22123808 TGTGAAATAATTAAATCTAGCATTAGAATA-TCAAATCCAGTCACCGTGATAACTAGAATAATTT
66 TGTGAAATACTTAAATCTAGTATTAGAATACTCAAATCCAGTCACCGTGATAACTAGAATAATTT
22123872 CTGAGAATATGTATTTCG
131 CTGAGAATATGTATTTCG
22123890 CTTAAGAAAG
Statistics
Matches: 272, Mismatches: 25, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
152 48 0.18
153 224 0.82
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (153 bp):
TTTGTTTTTGAGTTTAAATTGAGACTTCTTAATACTAATTAAAAAATTAAAAATGTTATTAAGCT
TGTGAAATACTTAAATCTAGTATTAGAATACTCAAATCCAGTCACCGTGATAACTAGAATAATTT
CTGAGAATATGTATTTCGTATAA
Found at i:22127611 original size:23 final size:22
Alignment explanation
Indices: 22127581--22127630 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
22127571 ATACCATGTA
* *
22127581 TATATGTATGTGTACGTGTAATG
1 TATATGTATGCGTACGCGT-ATG
*
22127604 TATATGTATGCGTATGCGTATG
1 TATATGTATGCGTACGCGTATG
22127626 TATAT
1 TATAT
22127631 ATAAAGTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.26, C:0.06, G:0.24, T:0.44
Consensus pattern (22 bp):
TATATGTATGCGTACGCGTATG
Found at i:22127870 original size:21 final size:21
Alignment explanation
Indices: 22127844--22127899 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
22127834 AACAGCGGTG
*
22127844 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
22127865 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
22127886 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
22127900 AACAGCGGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.25, C:0.09, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:22132840 original size:11 final size:11
Alignment explanation
Indices: 22132824--22132868 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
22132814 TTCCCACATT
22132824 AAAAAAAACAA
1 AAAAAAAACAA
22132835 AAAAAAAA-ACA
1 AAAAAAAACA-A
*
22132846 AAACAAAACAA
1 AAAAAAAACAA
*
22132857 AACAAAAACAA
1 AAAAAAAACAA
22132868 A
1 A
22132869 CAAACAGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 1 0.03
11 27 0.93
12 1 0.03
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:22132853 original size:15 final size:15
Alignment explanation
Indices: 22132833--22132872 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
22132823 TAAAAAAAAC
22132833 AAAAAAA-AAAACAA
1 AAAAAAACAAAACAA
*
22132847 AACAAAACAAAACAA
1 AAAAAAACAAAACAA
*
22132862 AAACAAACAAA
1 AAAAAAACAAA
22132873 CAGTTTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAACAA
Found at i:22132865 original size:6 final size:6
Alignment explanation
Indices: 22132827--22132868 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
22132817 CCACATTAAA
*
22132827 AAAAAC AAAAAA AAAAAC -AAAAC -AAAAC -AAAAC AAAAAC AAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAA
22132869 CAAACAGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 15 0.45
6 18 0.55
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:22132869 original size:10 final size:9
Alignment explanation
Indices: 22132824--22132872 Score: 64
Period size: 10 Copynumber: 5.3 Consensus size: 9
22132814 TTCCCACATT
22132824 AAAAAAAAC
1 AAAAAAAAC
22132833 AAAAAAAA-
1 AAAAAAAAC
*
22132841 AAACAAAAC
1 AAAAAAAAC
22132850 AAAACAAAAC
1 AAAA-AAAAC
22132860 AAAAACAAAC
1 AAAAA-AAAC
22132870 AAA
1 AAA
22132873 CAGTTTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
8 7 0.20
9 12 0.34
10 16 0.46
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:22133030 original size:2 final size:2
Alignment explanation
Indices: 22133018--22133048 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
22133008 ATACTAAAGA
22133018 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22133049 GGGGGTGGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22140996 original size:45 final size:45
Alignment explanation
Indices: 22140933--22141025 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
22140923 TAGTTGCCTT
22140933 AGCAGCACAATTGCAATGGAAAATCCATCAGCTTGATGTGAAGTC
1 AGCAGCACAATTGCAATGGAAAATCCATCAGCTTGATGTGAAGTC
22140978 AGCAGCACAATTGCAATGGAAAATCCATCAGCTTGATGTGAAGTC
1 AGCAGCACAATTGCAATGGAAAATCCATCAGCTTGATGTGAAGTC
22141023 AGC
1 AGC
22141026 CCGTCTCAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (45 bp):
AGCAGCACAATTGCAATGGAAAATCCATCAGCTTGATGTGAAGTC
Found at i:22143271 original size:2 final size:2
Alignment explanation
Indices: 22143264--22143292 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22143254 CTTGTTCTTA
22143264 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22143293 CATGTATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22143756 original size:44 final size:44
Alignment explanation
Indices: 22143706--22143792 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
22143696 GACACCTATG
*
22143706 TTTTCATGATAAAATGCTCAATTTAGAATGTTTGAAACTTTGAA
1 TTTTCATGATAAAATGCTCAACTTAGAATGTTTGAAACTTTGAA
* *
22143750 TTTTCATGATAAAATGCTCAACTTGGAATGTTTGAAATTTTGA
1 TTTTCATGATAAAATGCTCAACTTAGAATGTTTGAAACTTTGA
22143793 GATATTATTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.41
Consensus pattern (44 bp):
TTTTCATGATAAAATGCTCAACTTAGAATGTTTGAAACTTTGAA
Found at i:22144232 original size:13 final size:13
Alignment explanation
Indices: 22144214--22144240 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22144204 GAAGTAATTG
22144214 CACACGGGCGTGT
1 CACACGGGCGTGT
22144227 CACACGGGCGTGT
1 CACACGGGCGTGT
22144240 C
1 C
22144241 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:22156083 original size:21 final size:21
Alignment explanation
Indices: 22156054--22156103 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
22156044 AAATTTTTTA
* *
22156054 AAAAGTTTGAAA-TTAAATAAT
1 AAAATTTTGAAAGATAAA-AAT
22156075 AAAATTTTGAAAGATAAAAAT
1 AAAATTTTGAAAGATAAAAAT
*
22156096 ATAATTTT
1 AAAATTTT
22156104 ATAATGTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (21 bp):
AAAATTTTGAAAGATAAAAAT
Found at i:22156145 original size:30 final size:31
Alignment explanation
Indices: 22156095--22156158 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
22156085 AAGATAAAAA
*
22156095 TATAATTTTATAATGTATTAATTTATTATTTT
1 TATAATTTTATAATGTATTAA-ATATTATTTT
* *
22156127 TATATTTTTA-AATG-ATTAAATATTTTTTT
1 TATAATTTTATAATGTATTAAATATTATTTT
22156156 TAT
1 TAT
22156159 TTAAAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 11 0.38
30 5 0.17
31 4 0.14
32 9 0.31
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (31 bp):
TATAATTTTATAATGTATTAAATATTATTTT
Found at i:22158716 original size:31 final size:30
Alignment explanation
Indices: 22158654--22158717 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
22158644 TAAAATGGTG
*
22158654 ACTAAACTATTCAAAAAATTCATTTATGTC
1 ACTAAACTATTCAAAAAATTCATTTAAGTC
** *
22158684 ACTAAACTATTCAAAAGTTTTTATTTAAGTC
1 ACTAAACTATTCAAAA-AATTCATTTAAGTC
22158715 ACT
1 ACT
22158718 GAATTGTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 16 0.55
31 13 0.45
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.39
Consensus pattern (30 bp):
ACTAAACTATTCAAAAAATTCATTTAAGTC
Found at i:22165381 original size:29 final size:30
Alignment explanation
Indices: 22165348--22165409 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
22165338 ACTTAATTTA
22165348 TTGTTAATTTT-TTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
22165377 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
22165407 TTG
1 TTG
22165410 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 11 0.35
30 20 0.65
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:22165726 original size:2 final size:2
Alignment explanation
Indices: 22165719--22165745 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22165709 TAATTTATTT
22165719 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22165746 CAGTCAGGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22166090 original size:3 final size:3
Alignment explanation
Indices: 22166078--22166115 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
22166068 TTGTTGTTGC
22166078 TGG TGG -GG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG
22166116 GGATGAGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
TGG
Found at i:22175973 original size:6 final size:6
Alignment explanation
Indices: 22175917--22175964 Score: 96
Period size: 6 Copynumber: 8.0 Consensus size: 6
22175907 TTCCAATTTG
22175917 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
22175965 TGTTTTTGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:22176237 original size:27 final size:27
Alignment explanation
Indices: 22176199--22176254 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
22176189 CAATTATCAA
*
22176199 TTTTGTTGATAGTTTTTAAAAAAGTTG
1 TTTTGTTGATAGTTTTCAAAAAAGTTG
22176226 TTTTGTTGATAGTTTTCAAAAAAGTTG
1 TTTTGTTGATAGTTTTCAAAAAAGTTG
22176253 TT
1 TT
22176255 AACTTGATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.52
Consensus pattern (27 bp):
TTTTGTTGATAGTTTTCAAAAAAGTTG
Found at i:22176261 original size:27 final size:27
Alignment explanation
Indices: 22176204--22176263 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
22176194 ATCAATTTTG
* ***
22176204 TTGATAGTTTTTAAAAAAGTTGTTTTG
1 TTGATAGTTTTCAAAAAAGTTGTTAAC
22176231 TTGATAGTTTTCAAAAAAGTTGTTAAC
1 TTGATAGTTTTCAAAAAAGTTGTTAAC
22176258 TTGATA
1 TTGATA
22176264 TCTCTATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (27 bp):
TTGATAGTTTTCAAAAAAGTTGTTAAC
Found at i:22177755 original size:28 final size:28
Alignment explanation
Indices: 22177719--22177775 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
22177709 ATTATTTATT
22177719 TCTATTACATTTTTTTTCATATATTTTC
1 TCTATTACATTTTTTTTCATATATTTTC
22177747 TCTATTACATTTTTTTTCATATATTTTC
1 TCTATTACATTTTTTTTCATATATTTTC
22177775 T
1 T
22177776 TACTCTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.65
Consensus pattern (28 bp):
TCTATTACATTTTTTTTCATATATTTTC
Found at i:22177772 original size:14 final size:14
Alignment explanation
Indices: 22177727--22177773 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
22177717 TTTCTATTAC
22177727 ATTTTTTTTCATAT
1 ATTTTTTTTCATAT
* * *
22177741 ATTTTCTCT-ATTAC
1 ATTTTTTTTCA-TAT
22177755 ATTTTTTTTCATAT
1 ATTTTTTTTCATAT
22177769 ATTTT
1 ATTTT
22177774 CTTACTCTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
13 1 0.04
14 23 0.92
15 1 0.04
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (14 bp):
ATTTTTTTTCATAT
Found at i:22179108 original size:41 final size:41
Alignment explanation
Indices: 22179060--22179142 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
22179050 ATTTCTAGAG
*
22179060 TGAGCACTAAAAACAATTAATCACTGTATTAATGATTTCAT
1 TGAGCACTAAAAACAATTAATCACCGTATTAATGATTTCAT
*
22179101 TGAGCACTAAAAACAATTAATCACCGTATTAATGGTTTCAT
1 TGAGCACTAAAAACAATTAATCACCGTATTAATGATTTCAT
22179142 T
1 T
22179143 AATTTTACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.34
Consensus pattern (41 bp):
TGAGCACTAAAAACAATTAATCACCGTATTAATGATTTCAT
Found at i:22184266 original size:27 final size:27
Alignment explanation
Indices: 22184236--22184333 Score: 117
Period size: 27 Copynumber: 3.6 Consensus size: 27
22184226 TACACTACAA
*
22184236 GGGTATTTCGATAATTCTACAAATCGG
1 GGGTATTTCGATAATTTTACAAATCGG
* * *
22184263 GGGTGTTTCGGTAATTTTACAAATCAG
1 GGGTATTTCGATAATTTTACAAATCGG
* * *
22184290 AGGTATTTCGATAATTTTACAAGTCGA
1 GGGTATTTCGATAATTTTACAAATCGG
22184317 GGGTATTTC-AGTAATTT
1 GGGTATTTCGA-TAATTT
22184334 CTCTTTATTA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 58 0.98
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCGG
Found at i:22184266 original size:54 final size:54
Alignment explanation
Indices: 22184208--22184333 Score: 139
Period size: 54 Copynumber: 2.3 Consensus size: 54
22184198 TTACCCTATA
* *
22184208 GGGGTATGTCGGTTATTTTAC-ACTACA-AGGGTATTTCGATAATTCTACAAATCG
1 GGGGTATGTCGGTAATTTTACAAAT-CAGA-GGTATTTCGATAATTCTACAAATCG
* * * *
22184262 GGGGTGTTTCGGTAATTTTACAAATCAGAGGTATTTCGATAATTTTACAAGTCG
1 GGGGTATGTCGGTAATTTTACAAATCAGAGGTATTTCGATAATTCTACAAATCG
* * *
22184316 AGGGTATTTCAGTAATTT
1 GGGGTATGTCGGTAATTT
22184334 CTCTTTATTA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
54 58 0.95
55 3 0.05
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (54 bp):
GGGGTATGTCGGTAATTTTACAAATCAGAGGTATTTCGATAATTCTACAAATCG
Found at i:22191374 original size:12 final size:12
Alignment explanation
Indices: 22191357--22191381 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22191347 TTTGTACTGT
22191357 TAAAAACTGATG
1 TAAAAACTGATG
22191369 TAAAAACTGATG
1 TAAAAACTGATG
22191381 T
1 T
22191382 GGCTGATGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (12 bp):
TAAAAACTGATG
Found at i:22194833 original size:30 final size:31
Alignment explanation
Indices: 22194798--22194859 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
22194788 AACCCGGTCA
22194798 ACTTAAA-AAAAGCTTTTGAATAGTTAAGTG
1 ACTTAAATAAAAGCTTTTGAATAGTTAAGTG
* *
22194828 ACTTAAATAAAATCTTTTGAATAGTTTAGTG
1 ACTTAAATAAAAGCTTTTGAATAGTTAAGTG
22194859 A
1 A
22194860 TAATTTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.24
31 22 0.76
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.37
Consensus pattern (31 bp):
ACTTAAATAAAAGCTTTTGAATAGTTAAGTG
Found at i:22194963 original size:21 final size:17
Alignment explanation
Indices: 22194920--22194955 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
22194910 AGTTTAGTAA
22194920 CCTTGTATGTAGTTTGC
1 CCTTGTATGTAGTTTGC
22194937 CCTTGTATGTAGTTTGC
1 CCTTGTATGTAGTTTGC
22194954 CC
1 CC
22194956 AAAGTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (17 bp):
CCTTGTATGTAGTTTGC
Found at i:22200755 original size:22 final size:23
Alignment explanation
Indices: 22200713--22200756 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22200703 TTCTCTCAAT
*
22200713 TTTAAAATTAAATAAATTAATTC
1 TTTAAAATAAAATAAATTAATTC
22200736 TTTAAAA-AAAATGAAA-TAATT
1 TTTAAAATAAAAT-AAATTAATT
22200757 TAATTCCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
TTTAAAATAAAATAAATTAATTC
Found at i:22204787 original size:2 final size:2
Alignment explanation
Indices: 22204780--22204808 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22204770 CTGTTGGACT
22204780 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22204809 TATTTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22207142 original size:31 final size:31
Alignment explanation
Indices: 22207104--22207162 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
22207094 GGTATAATTA
*
22207104 TATACATGAAACTTCGGTTATGGTTCAAATG
1 TATACATGAAACTTCGATTATGGTTCAAATG
* *
22207135 TATACATGAAACTTTGATTGTGGTTCAA
1 TATACATGAAACTTCGATTATGGTTCAA
22207163 TCATACACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (31 bp):
TATACATGAAACTTCGATTATGGTTCAAATG
Found at i:22210345 original size:230 final size:230
Alignment explanation
Indices: 22209942--22210371 Score: 860
Period size: 230 Copynumber: 1.9 Consensus size: 230
22209932 TCTTCACAGC
22209942 TAATCGCCTCAGAATAATTAAATGGCTCTTGATTCGCATCTATATCTTCAGCCACATTTAAAGCA
1 TAATCGCCTCAGAATAATTAAATGGCTCTTGATTCGCATCTATATCTTCAGCCACATTTAAAGCA
22210007 TAAGCAACTAGATCAACCTCGGCATACTTCTTTGGAGGTTTAATTTCTCTTCTTGTCCTGTTTTT
66 TAAGCAACTAGATCAACCTCGGCATACTTCTTTGGAGGTTTAATTTCTCTTCTTGTCCTGTTTTT
22210072 GGCGATAGAGTATTGCGGTGAAGAAGCAACTCTATTCTCAATTTTTGTACTGGCTTGAGGAGTTG
131 GGCGATAGAGTATTGCGGTGAAGAAGCAACTCTATTCTCAATTTTTGTACTGGCTTGAGGAGTTG
22210137 ATTCTGTATTAATCTGATGCTCCACCTGCTTTTGG
196 ATTCTGTATTAATCTGATGCTCCACCTGCTTTTGG
22210172 TAATCGCCTCAGAATAATTAAATGGCTCTTGATTCGCATCTATATCTTCAGCCACATTTAAAGCA
1 TAATCGCCTCAGAATAATTAAATGGCTCTTGATTCGCATCTATATCTTCAGCCACATTTAAAGCA
22210237 TAAGCAACTAGATCAACCTCGGCATACTTCTTTGGAGGTTTAATTTCTCTTCTTGTCCTGTTTTT
66 TAAGCAACTAGATCAACCTCGGCATACTTCTTTGGAGGTTTAATTTCTCTTCTTGTCCTGTTTTT
22210302 GGCGATAGAGTATTGCGGTGAAGAAGCAACTCTATTCTCAATTTTTGTACTGGCTTGAGGAGTTG
131 GGCGATAGAGTATTGCGGTGAAGAAGCAACTCTATTCTCAATTTTTGTACTGGCTTGAGGAGTTG
22210367 ATTCT
196 ATTCT
22210372 CAATTTTAAT
Statistics
Matches: 200, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
230 200 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (230 bp):
TAATCGCCTCAGAATAATTAAATGGCTCTTGATTCGCATCTATATCTTCAGCCACATTTAAAGCA
TAAGCAACTAGATCAACCTCGGCATACTTCTTTGGAGGTTTAATTTCTCTTCTTGTCCTGTTTTT
GGCGATAGAGTATTGCGGTGAAGAAGCAACTCTATTCTCAATTTTTGTACTGGCTTGAGGAGTTG
ATTCTGTATTAATCTGATGCTCCACCTGCTTTTGG
Found at i:22211121 original size:30 final size:29
Alignment explanation
Indices: 22211060--22211125 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 29
22211050 TCTTTAAATG
* *
22211060 TATATAATTAAATCAAAATTAAAATTTTA
1 TATATAATTAAACCAAAATTAAAAGTTTA
22211089 TATATACATTTAAACCAAAATT-AAAGTTTA
1 TATATA-A-TTAAACCAAAATTAAAAGTTTA
22211119 TATATAA
1 TATATAA
22211126 AATTACATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 7 0.21
30 14 0.42
31 12 0.36
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (29 bp):
TATATAATTAAACCAAAATTAAAAGTTTA
Found at i:22211598 original size:2 final size:2
Alignment explanation
Indices: 22211593--22211628 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
22211583 TATATCATTT
22211593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22211629 AAAGTCTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22215309 original size:2 final size:2
Alignment explanation
Indices: 22215296--22215325 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
22215286 ACTAATTACT
22215296 TA TA TCA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T
22215326 GATAAATTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22215771 original size:2 final size:2
Alignment explanation
Indices: 22215764--22215794 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
22215754 ATGTTAAGGT
22215764 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22215795 ATCATATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:22217215 original size:14 final size:14
Alignment explanation
Indices: 22217186--22217230 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
22217176 ATATGTGAAG
**
22217186 AATATTATTTAAAA
1 AATATTATTTTTAA
22217200 AATATTATTTTTAA
1 AATATTATTTTTAA
*
22217214 AAT-TTATTATTAA
1 AATATTATTTTTAA
22217227 AATA
1 AATA
22217231 AAATTGAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 12 0.44
14 15 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
AATATTATTTTTAA
Found at i:22217221 original size:16 final size:17
Alignment explanation
Indices: 22217188--22217225 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
22217178 ATGTGAAGAA
22217188 TATTATTTAAAAAATAT
1 TATTATTTAAAAAATAT
**
22217205 TATT-TTTAAAATTTAT
1 TATTATTTAAAAAATAT
22217221 TATTA
1 TATTA
22217226 AAATAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTATTTAAAAAATAT
Found at i:22217226 original size:13 final size:14
Alignment explanation
Indices: 22217140--22217230 Score: 51
Period size: 14 Copynumber: 6.0 Consensus size: 14
22217130 TACAAAACAT
22217140 TTATTATTAAAATA
1 TTATTATTAAAATA
* *
22217154 TTAATATTAAATATT
1 TTATTATTAAA-ATA
22217169 TTCAATAATATGTGAAGAATA
1 TT--AT--TAT-T-AA-AATA
*
22217190 TTATT-TAAAAAATA
1 TTATTAT-TAAAATA
*
22217204 TTATTTTTAAAAT-
1 TTATTATTAAAATA
22217217 TTATTATTAAAATA
1 TTATTATTAAAATA
22217231 AAATTGAAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 20
0.68 0.09 0.23
Matches are distributed among these distances:
13 12 0.20
14 24 0.41
15 7 0.12
16 1 0.02
17 2 0.03
19 5 0.08
20 1 0.02
21 6 0.10
22 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.47
Consensus pattern (14 bp):
TTATTATTAAAATA
Found at i:22217297 original size:27 final size:24
Alignment explanation
Indices: 22217242--22217286 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
22217232 AATTGAAATA
* *
22217242 TTAA-ATAAATTATTATATATGAC
1 TTAATATAAATAATTAAATATGAC
22217265 TTAATATAAATAATTAAATATG
1 TTAATATAAATAATTAAATATG
22217287 TACATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.42
Consensus pattern (24 bp):
TTAATATAAATAATTAAATATGAC
Found at i:22222790 original size:46 final size:46
Alignment explanation
Indices: 22222728--22222992 Score: 354
Period size: 46 Copynumber: 5.7 Consensus size: 46
22222718 AGTGTGCTCT
22222728 CTGATA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
22222774 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
22222820 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
22222866 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** * *
22222912 GTGACGGGGAAATGAATAAGACCATGGTTGAATGATTCCATGGCAAC
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
22222959 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
22222993 CACTATGTCA
Statistics
Matches: 198, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
45 1 0.01
46 159 0.80
47 38 0.19
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:22226762 original size:8 final size:8
Alignment explanation
Indices: 22226749--22226777 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
22226739 TTATGTTTAG
22226749 TATATTAT
1 TATATTAT
22226757 TATATTAT
1 TATATTAT
22226765 TATATTAT
1 TATATTAT
22226773 TATAT
1 TATAT
22226778 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:22226810 original size:5 final size:5
Alignment explanation
Indices: 22226800--22226835 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
22226790 TTATGTTTTA
*
22226800 ATTAT ATTAT ATTAT ATTGT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
22226836 AAACTAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:22228125 original size:15 final size:15
Alignment explanation
Indices: 22228105--22228161 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
22228095 CGATGAATTT
22228105 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
22228120 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
*
22228135 ACTGAATTTATATTG
1 ATTGAATTTATATTG
22228150 ATTGAA-TTATAT
1 ATTGAATTTATAT
22228162 AATATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 6 0.17
15 30 0.83
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:22228634 original size:21 final size:21
Alignment explanation
Indices: 22228532--22228659 Score: 132
Period size: 21 Copynumber: 6.0 Consensus size: 21
22228522 GGCTTTATCG
* *
22228532 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
* * *
22228553 ATTTCAAGCACCTCGTGTGTTGT
1 A--TCAGGCACCTTGTGTGTCGT
22228576 ATCAGGCACCTCT-TGTGTCGT
1 ATCAGGCACCT-TGTGTGTCGT
*
22228597 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
22228618 ATCAGGCACCTTGTGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
* * * *
22228639 TTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
22228660 GTACTGATCA
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
21 73 0.82
23 16 0.18
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.37
Consensus pattern (21 bp):
ATCAGGCACCTTGTGTGTCGT
Found at i:22232577 original size:63 final size:63
Alignment explanation
Indices: 22232478--22232604 Score: 220
Period size: 63 Copynumber: 2.0 Consensus size: 63
22232468 GACACCTATG
22232478 TAAGAACATTGAGATACCATCTTCTTTGATAAAAGATTAAATTTCAAACTCTCCTTT-CCAATT
1 TAAGAACATTGAGATACCATCTTCTTTGATAAAAGATTAAATTTCAAACTCT-CTTTGCCAATT
* *
22232541 TAAGAACGTTGGGATACCATCTTCTTTGATAAAAGATTAAATTTCAAACTCTCTTTGCCAATT
1 TAAGAACATTGAGATACCATCTTCTTTGATAAAAGATTAAATTTCAAACTCTCTTTGCCAATT
22232604 T
1 T
22232605 GATTTGATTC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
62 4 0.07
63 57 0.93
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (63 bp):
TAAGAACATTGAGATACCATCTTCTTTGATAAAAGATTAAATTTCAAACTCTCTTTGCCAATT
Found at i:22237137 original size:62 final size:59
Alignment explanation
Indices: 22237032--22237147 Score: 169
Period size: 62 Copynumber: 1.9 Consensus size: 59
22237022 TTAATATTAA
* * * *
22237032 ATTAATATAATATAATATTTATCAAGATAAATATTAAATTAAATTTAATCTTAAATTTG
1 ATTAAAATAATAGAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATTTG
22237091 ATTAAAATAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATATTAA
1 ATTAAAATAATAGAATATTTA--T-CAAGATAAACATTAAATTAAATTTAATATTAA
22237148 GATAATCACC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 19 0.38
61 1 0.02
62 30 0.60
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (59 bp):
ATTAAAATAATAGAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATTTG
Found at i:22240756 original size:14 final size:14
Alignment explanation
Indices: 22240737--22240765 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22240727 TAGTTAAATA
22240737 ATAATCTATATAAC
1 ATAATCTATATAAC
22240751 ATAATCTATATAAC
1 ATAATCTATATAAC
22240765 A
1 A
22240766 AAGTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:22242710 original size:20 final size:21
Alignment explanation
Indices: 22242644--22242712 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
22242634 TCACTTCGTT
22242644 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
22242665 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
22242686 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
22242707 -CTTTTT
1 TCTTTTT
22242713 TATTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:22246129 original size:11 final size:11
Alignment explanation
Indices: 22246070--22246130 Score: 56
Period size: 11 Copynumber: 5.7 Consensus size: 11
22246060 AAAAAAAACT
22246070 AAAAATTA-AA
1 AAAAATTATAA
**
22246080 AAAGTTTAT-A
1 AAAAATTATAA
*
22246090 AAATATT-TAA
1 AAAAATTATAA
*
22246100 AATAAATAATAA
1 AA-AAATTATAA
22246112 AAAAATTATAA
1 AAAAATTATAA
22246123 AAAAATTA
1 AAAAATTA
22246131 ATCATGAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
9 1 0.03
10 15 0.38
11 19 0.47
12 5 0.12
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:22249908 original size:46 final size:46
Alignment explanation
Indices: 22249856--22250211 Score: 518
Period size: 46 Copynumber: 7.7 Consensus size: 46
22249846 AGTGTGCTCT
*
22249856 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
22249902 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
22249948 CTGATATGAAAT-ATGTAAGACAATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
22249994 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
22250040 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * *
22250086 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
22250132 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
22250178 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGA
22250212 CACTATGACA
Statistics
Matches: 288, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
45 1 0.00
46 287 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:22251405 original size:35 final size:35
Alignment explanation
Indices: 22251361--22251526 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
22251351 TCCTCATTGA
** *
22251361 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
22251396 AATGCCATACCTACATTT-TTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
22251435 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
22251470 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
22251505 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
22251527 CTTTGCCATG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
34 12 0.10
35 75 0.65
38 2 0.02
39 18 0.16
40 9 0.08
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:22251446 original size:74 final size:73
Alignment explanation
Indices: 22251356--22251526 Score: 217
Period size: 74 Copynumber: 2.4 Consensus size: 73
22251346 GGTTTTCCTC
** * * **
22251356 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTT-TTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
22251419 TCAGTATGG
65 TCAGTATGG
*
22251428 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
22251493 CTCAGTATGG
64 CTCAGTATGG
22251503 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
22251527 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
70 21 0.24
72 1 0.01
73 9 0.10
74 44 0.50
75 13 0.15
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:22254738 original size:22 final size:21
Alignment explanation
Indices: 22254708--22254767 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
22254698 TTTTCACTTT
*
22254708 TAATTTTTTATAATATTTTAAA
1 TAATATTTTATAATATTTT-AA
*
22254730 TAATATTTTGTAAT-TTTTAA
1 TAATATTTTATAATATTTTAA
* *
22254750 T-ATATTTTTTAAAATTTT
1 TAATATTTTATAATATTTT
22254768 GCTGATGTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 10 0.30
20 7 0.21
21 4 0.12
22 12 0.36
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TAATATTTTATAATATTTTAA
Found at i:22255448 original size:22 final size:23
Alignment explanation
Indices: 22255395--22255448 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
22255385 ATTATGTTAT
* *
22255395 ATATATTATATAATTTATAATAC
1 ATATATAATAAAATTTATAATAC
* *
22255418 ATA-AAAATAAAATTTATAGTA-
1 ATATATAATAAAATTTATAATAC
22255439 ATATATAATA
1 ATATATAATA
22255449 CTATAAAGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 3 0.12
22 19 0.76
23 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
ATATATAATAAAATTTATAATAC
Found at i:22257155 original size:39 final size:39
Alignment explanation
Indices: 22257101--22257180 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
22257091 AATATATGGC
22257101 GTAAGTTAATGGATGAAAGATGCTATAACAATTTGGTAT
1 GTAAGTTAATGGATGAAAGATGCTATAACAATTTGGTAT
*
22257140 GTAAGTTCATGGATGAAAGATGCTATAACAATTTGGTAT
1 GTAAGTTAATGGATGAAAGATGCTATAACAATTTGGTAT
22257179 GT
1 GT
22257181 GGTCTGTAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.34
Consensus pattern (39 bp):
GTAAGTTAATGGATGAAAGATGCTATAACAATTTGGTAT
Found at i:22259072 original size:37 final size:37
Alignment explanation
Indices: 22259019--22259121 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
22259009 CGAATAGTCC
*
22259019 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
22259056 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
22259093 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
22259122 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:22259347 original size:48 final size:48
Alignment explanation
Indices: 22259293--22259789 Score: 915
Period size: 48 Copynumber: 10.4 Consensus size: 48
22259283 GCCGAATCAC
* *
22259293 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
*
22259341 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
*
22259389 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
*
22259437 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAG
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
22259485 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
22259533 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
22259581 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
22259629 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
* *
22259677 TAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACAT
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
*
22259725 TAGCCATTCGGCTTTACCACATAT-CATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
22259772 TAGCCATTCGGCTTTACC
1 TAGCCATTCGGCTTTACC
22259790 ACACACATAT
Statistics
Matches: 441, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
47 40 0.09
48 401 0.91
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
Found at i:22261159 original size:2 final size:2
Alignment explanation
Indices: 22261152--22261178 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22261142 AATTCATTAT
22261152 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22261179 CTAAACACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22263366 original size:28 final size:27
Alignment explanation
Indices: 22263335--22263428 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 27
22263325 CTGACTGATT
22263335 TCGCACACATAGCGCTCGATTATAGAAC
1 TCGCACACATAGCGCTCGATTA-AGAAC
* * **
22263363 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGCG-CTCGATTAAGAA-C
22263392 TCGCACACATAGCGCTCGATTGAAGAAC
1 TCGCACACATAGCGCTCGATT-AAGAAC
*
22263420 TTGCACACA
1 TCGCACACA
22263429 CAGTTCCTCA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
28 30 0.56
29 24 0.44
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (27 bp):
TCGCACACATAGCGCTCGATTAAGAAC
Found at i:22263525 original size:40 final size:40
Alignment explanation
Indices: 22263444--22263717 Score: 403
Period size: 40 Copynumber: 6.9 Consensus size: 40
22263434 CCTCATAATT
* *
22263444 CCAGCACGAATGC-CTTCGAGG-TTTAGCCC-GATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACA
* *
22263482 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* *
22263522 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
22263562 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGA-CTAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* * *
22263601 CCAGCACGAATGCTCTTCGAGACTTAGCCCAGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
22263641 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
22263681 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
22263718 TAACTCTCAA
Statistics
Matches: 219, Mismatches: 13, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 14 0.06
39 48 0.22
40 157 0.72
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:22263617 original size:79 final size:79
Alignment explanation
Indices: 22263444--22263712 Score: 411
Period size: 79 Copynumber: 3.4 Consensus size: 79
22263434 CCTCATAATT
* * * *
22263444 CCAGCACGAATGC-CTTCGAGG-TTTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGGACT
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACT
22263506 TAGCCCGGA-TATATCA
65 TAGCCCGGACTA-A-CA
*
22263522 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTT
22263587 AGCCCGGACTAACA
66 AGCCCGGACTAACA
* *
22263601 CCAGCACGAATGCTCTTCGAGACTTAGCCCAGACATAACACCAGCACGAATGCTCTTCGGGACTT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTT
22263666 AGCCCGGACATAACA
66 AGCCCGGAC-TAACA
22263681 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
22263713 CTATATAACT
Statistics
Matches: 176, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
78 14 0.08
79 85 0.48
80 75 0.43
81 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.20
Consensus pattern (79 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTT
AGCCCGGACTAACA
Found at i:22263647 original size:119 final size:120
Alignment explanation
Indices: 22263444--22263718 Score: 425
Period size: 119 Copynumber: 2.3 Consensus size: 120
22263434 CCTCATAATT
* * *
22263444 CCAGCACGAATGC-CTTCGAGG-TTTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGGACT
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGAGACT
* * * *
22263506 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
65 TAGCCCAGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
22263562 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACTA-A-CACCAGCACGAATGCTCTTCGAGACT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGA-TATATCACCAGCACGAATGCTCTTCGAGACT
22263625 TAGCCCAGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
65 TAGCCCAGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
22263681 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
22263719 AACTCTCAAT
Statistics
Matches: 143, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
118 17 0.12
119 121 0.85
120 3 0.02
121 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.21
Consensus pattern (120 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAGCACGAATGCTCTTCGAGACTT
AGCCCAGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
Found at i:22265048 original size:37 final size:37
Alignment explanation
Indices: 22264995--22265097 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
22264985 CGAATAGTCC
*
22264995 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
22265032 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
22265069 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
22265098 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:22265324 original size:48 final size:48
Alignment explanation
Indices: 22265270--22265674 Score: 720
Period size: 48 Copynumber: 8.4 Consensus size: 48
22265260 GCCGAATCAC
*
22265270 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
22265318 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
22265366 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
22265414 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
22265462 TAGCGATTCGGCTTTACCGCATATACATATCTCATACGTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
22265510 TAGCCATTCGGCTTTACCGCATATACATATCTCATACGTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
22265558 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
22265606 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
22265654 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
22265675 CACATATATA
Statistics
Matches: 346, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 346 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:22271824 original size:6 final size:6
Alignment explanation
Indices: 22271788--22271850 Score: 67
Period size: 6 Copynumber: 10.5 Consensus size: 6
22271778 ATAAGTCTTC
* **
22271788 AAAAAT AAATAAG AGAAAAT -AAAAT TTAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAA-AAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
22271837 AAAAAT -AAAAT AAA
1 AAAAAT AAAAAT AAA
22271851 GGGCCTCAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
5 10 0.21
6 31 0.65
7 5 0.10
8 2 0.04
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:22282578 original size:6 final size:6
Alignment explanation
Indices: 22282567--22282612 Score: 65
Period size: 6 Copynumber: 7.5 Consensus size: 6
22282557 AAAATTTAAT
* *
22282567 AAATAA AAATAA AATCTAA AACTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AA-ATAA AAATAA AAATAA AAATAA AAATAA AAA
22282613 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 32 0.86
7 5 0.14
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:22282594 original size:19 final size:18
Alignment explanation
Indices: 22282567--22282612 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
22282557 AAAATTTAAT
*
22282567 AAATAAAAATAAAATCTAA
1 AAATAAAAATAAAA-ATAA
*
22282586 AACTAAAAATAAAAATAA
1 AAATAAAAATAAAAATAA
22282604 AAATAAAAA
1 AAATAAAAA
22282613 ACATATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATAAAAATAAAAATAA
Found at i:22282650 original size:9 final size:9
Alignment explanation
Indices: 22282632--22282700 Score: 68
Period size: 9 Copynumber: 7.7 Consensus size: 9
22282622 TTTATACAAA
*
22282632 TAATTTGGT
1 TAATTCGGT
22282641 TAATTCGGT
1 TAATTCGGT
* *
22282650 TAATTTGGG
1 TAATTCGGT
22282659 TAATTCGAG-
1 TAATTCG-GT
*
22282668 TAATTCAGT
1 TAATTCGGT
* *
22282677 TAATTTGAT
1 TAATTCGGT
22282686 TAATTCGGT
1 TAATTCGGT
22282695 TAATTC
1 TAATTC
22282701 TATACTTATT
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
8 1 0.02
9 46 0.96
10 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:22282671 original size:27 final size:27
Alignment explanation
Indices: 22282632--22282700 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
22282622 TTTATACAAA
* * *
22282632 TAATTTGGTTAATTCGGTTAATTTGGG
1 TAATTCGGTTAATTCAGTTAATTTGAG
*
22282659 TAATTCGAG-TAATTCAGTTAATTTGAT
1 TAATTCG-GTTAATTCAGTTAATTTGAG
22282686 TAATTCGGTTAATTC
1 TAATTCGGTTAATTC
22282701 TATACTTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 34 0.94
28 1 0.03
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (27 bp):
TAATTCGGTTAATTCAGTTAATTTGAG
Found at i:22283898 original size:17 final size:17
Alignment explanation
Indices: 22283876--22283908 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22283866 AAGAATTATT
*
22283876 ATTTATTTTATGATTAC
1 ATTTATTTTAAGATTAC
22283893 ATTTATTTTAAGATTA
1 ATTTATTTTAAGATTA
22283909 TTTTATAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (17 bp):
ATTTATTTTAAGATTAC
Found at i:22286302 original size:74 final size:75
Alignment explanation
Indices: 22286181--22286319 Score: 262
Period size: 74 Copynumber: 1.9 Consensus size: 75
22286171 TAATTCATGT
22286181 AAGTTAATATTAATTATTGAAGTAACATATATTACAATACGCAAACCAAAGTTTTAATTT-TTTC
1 AAGTTAATATTAATTATTGAAGTAACATATATTACAATACGCAAACCAAAGTTTTAATTTCTTTC
22286245 TGTAAAATGG
66 TGTAAAATGG
*
22286255 AAGTTAATATTAATTATTGAAGTAACATATATTACAATATGCAAACCAAAGTTTTAATTTCTTTC
1 AAGTTAATATTAATTATTGAAGTAACATATATTACAATACGCAAACCAAAGTTTTAATTTCTTTC
22286320 AGTACCTTCT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
74 59 0.94
75 4 0.06
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (75 bp):
AAGTTAATATTAATTATTGAAGTAACATATATTACAATACGCAAACCAAAGTTTTAATTTCTTTC
TGTAAAATGG
Found at i:22302055 original size:19 final size:18
Alignment explanation
Indices: 22302031--22302090 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 18
22302021 ATGATTTTTG
*
22302031 ATATAATCAGTTAAAAAAA
1 ATATAAACAG-TAAAAAAA
*
22302050 ATATAAACAGT-AAACAA
1 ATATAAACAGTAAAAAAA
*
22302067 A-ATAAA-AGCTGAAAAAA
1 ATATAAACAG-TAAAAAAA
22302084 ATATAAA
1 ATATAAA
22302091 AATATAGAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
15 2 0.06
16 6 0.17
17 12 0.34
18 6 0.17
19 9 0.26
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (18 bp):
ATATAAACAGTAAAAAAA
Found at i:22302356 original size:38 final size:39
Alignment explanation
Indices: 22302305--22302381 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
22302295 GGGAGAAGAG
22302305 AAGAGAAGAAAT-AAAAGGTATTTTCTTTTTTGTTATTT
1 AAGAGAAGAAATAAAAAGGTATTTTCTTTTTTGTTATTT
22302343 AAGAGAAGAAATAAAAAGGTATTTTCTTTTTTGTTATTT
1 AAGAGAAGAAATAAAAAGGTATTTTCTTTTTTGTTATTT
22302382 TTAAATAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 12 0.32
39 26 0.68
ACGTcount: A:0.38, C:0.03, G:0.16, T:0.44
Consensus pattern (39 bp):
AAGAGAAGAAATAAAAAGGTATTTTCTTTTTTGTTATTT
Found at i:22312932 original size:93 final size:93
Alignment explanation
Indices: 22312820--22313020 Score: 366
Period size: 93 Copynumber: 2.2 Consensus size: 93
22312810 CGCCCATAAG
* *
22312820 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
22312885 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
*
22312913 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22312978 ACAAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
22313006 CGAACTCGGACTCAA
1 CGAACTCGGACTCAA
22313021 TCACGAACTT
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 104 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:22312935 original size:47 final size:47
Alignment explanation
Indices: 22312867--22313020 Score: 201
Period size: 47 Copynumber: 3.3 Consensus size: 47
22312857 ATCCATAAGT
22312867 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
22312914 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
*
22312960 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
22313007 GAACTCGGACTCAA
1 GAACTCGGACTCAA
22313021 TCACGAACTT
Statistics
Matches: 91, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 28 0.31
47 43 0.47
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:22312988 original size:46 final size:46
Alignment explanation
Indices: 22312813--22312988 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
22312803 TGTAACCCGC
* * *
22312813 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
22312859 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
22312909 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
22312952 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
22312989 TGCCTAGTTA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:22313026 original size:18 final size:18
Alignment explanation
Indices: 22313003--22313038 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
22312993 TAGTTACATC
22313003 TCACGAACTCGGACTCAA
1 TCACGAACTCGGACTCAA
*
22313021 TCACGAACTTGGACTCAA
1 TCACGAACTCGGACTCAA
22313039 CTCAACGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.31, G:0.17, T:0.19
Consensus pattern (18 bp):
TCACGAACTCGGACTCAA
Found at i:22313118 original size:46 final size:45
Alignment explanation
Indices: 22313025--22313110 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
22313015 ACTCAATCAC
* * *
22313025 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
22313071 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
22313111 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:22315054 original size:29 final size:29
Alignment explanation
Indices: 22315015--22315102 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
22315005 CAAAGATAAC
*
22315015 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
22315044 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
22315073 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
22315103 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:22315073 original size:15 final size:15
Alignment explanation
Indices: 22315015--22315093 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
22315005 CAAAGATAAC
*
22315015 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
22315029 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
22315044 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
22315058 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
22315073 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
22315088 AAGAAA
1 AAGAAA
22315094 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:22315102 original size:15 final size:15
Alignment explanation
Indices: 22315026--22315102 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
22315016 AGAAAACCGA
22315026 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
22315041 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
22315055 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
22315069 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
22315085 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
22315100 ATA
1 ATA
22315103 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:22318094 original size:93 final size:93
Alignment explanation
Indices: 22317981--22318246 Score: 505
Period size: 93 Copynumber: 2.9 Consensus size: 93
22317971 CCCGCCCATA
* * *
22317981 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
22318046 AACGAGTTCGGATGCCTAGTTACATCTC
66 AACGAGTTCGGATGCCTAGTTACATCTC
22318074 ACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
22318139 AACGAGTTCGGATGCCTAGTTACATCTC
66 AACGAGTTCGGATGCCTAGTTACATCTC
22318167 ACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 ACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
22318232 AACGAGTTCGGATGC
66 AACGAGTTCGGATGC
22318247 TCAACCATCC
Statistics
Matches: 170, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 170 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
ACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
AACGAGTTCGGATGCCTAGTTACATCTC
Found at i:22318243 original size:46 final size:46
Alignment explanation
Indices: 22317983--22318243 Score: 295
Period size: 46 Copynumber: 5.6 Consensus size: 46
22317973 CGCCCATAAC
* * *
22317983 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
* * *
22318029 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
22318076 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
* * *
22318122 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
22318169 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
22318215 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
22318244 TGCTCAACCA
Statistics
Matches: 182, Mismatches: 15, Indels: 36
0.78 0.06 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 4 0.02
45 4 0.02
46 85 0.47
47 58 0.32
48 4 0.02
49 4 0.02
50 7 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:22341317 original size:21 final size:21
Alignment explanation
Indices: 22341286--22341337 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
22341276 TTGAGCGAGT
* * *
22341286 TCCTGTTGCATCAGTCCCATG
1 TCCTTTTGCATCACTCCCATA
* *
22341307 TCTTTTTGCATGACTCCCATA
1 TCCTTTTGCATCACTCCCATA
22341328 TCCTTTTGCA
1 TCCTTTTGCA
22341338 ATCTCGTGGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.15, C:0.31, G:0.13, T:0.40
Consensus pattern (21 bp):
TCCTTTTGCATCACTCCCATA
Found at i:22355259 original size:25 final size:24
Alignment explanation
Indices: 22355230--22355304 Score: 63
Period size: 25 Copynumber: 3.3 Consensus size: 24
22355220 ATCATACTAC
22355230 TTTTTAACAATAGAAATTGATAAAA
1 TTTTTAA-AATAGAAATTGATAAAA
**
22355255 TTTTT--AATAGAAA---A-ATTA
1 TTTTTAAAATAGAAATTGATAAAA
*
22355273 TTTTTAATAATAGAAATTGATGAAA
1 TTTTTAA-AATAGAAATTGATAAAA
22355298 TTTTTAA
1 TTTTTAA
22355305 TAAAAAAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
18 7 0.18
19 1 0.03
21 8 0.21
22 8 0.21
24 1 0.03
25 13 0.34
ACGTcount: A:0.48, C:0.01, G:0.08, T:0.43
Consensus pattern (24 bp):
TTTTTAAAATAGAAATTGATAAAA
Found at i:22355266 original size:22 final size:21
Alignment explanation
Indices: 22355238--22355306 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
22355228 ACTTTTTAAC
22355238 AATAGAAATTGATAAAATTTTT
1 AATAGAAATTGAT-AAATTTTT
* * *
22355260 AATAGAAA--AATTATTTTTAAT
1 AATAGAAATTGATAAATTTT--T
22355281 AATAGAAATTGATGAAATTTTT
1 AATAGAAATTGAT-AAATTTTT
22355303 AATA
1 AATA
22355307 AAAAAATTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
19 5 0.14
20 2 0.06
21 9 0.25
22 13 0.36
23 2 0.06
24 5 0.14
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.41
Consensus pattern (21 bp):
AATAGAAATTGATAAATTTTT
Found at i:22355278 original size:43 final size:43
Alignment explanation
Indices: 22355230--22355315 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
22355220 ATCATACTAC
*
22355230 TTTTTAACAATAGAAATTGATAAAATTTTTAATAGAAAAATTA
1 TTTTTAACAATAGAAATTGATAAAATTTTTAATAAAAAAATTA
* *
22355273 TTTTTAATAATAGAAATTGATGAAATTTTTAATAAAAAAATTA
1 TTTTTAACAATAGAAATTGATAAAATTTTTAATAAAAAAATTA
22355316 ATTTACTCTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (43 bp):
TTTTTAACAATAGAAATTGATAAAATTTTTAATAAAAAAATTA
Found at i:22361645 original size:13 final size:13
Alignment explanation
Indices: 22361627--22361653 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22361617 GCTCGACAGG
22361627 GACACACCCGTGT
1 GACACACCCGTGT
22361640 GACACACCCGTGT
1 GACACACCCGTGT
22361653 G
1 G
22361654 CAATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACACCCGTGT
Found at i:22363734 original size:20 final size:20
Alignment explanation
Indices: 22363697--22363734 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22363687 ATAAAATCTA
*
22363697 AAAATGAAATAGTATTAAAT
1 AAAATGAAAAAGTATTAAAT
22363717 AAAAT-AAAAAGTACTTAA
1 AAAATGAAAAAGTA-TTAA
22363735 CGAAGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.26
Consensus pattern (20 bp):
AAAATGAAAAAGTATTAAAT
Found at i:22373760 original size:80 final size:80
Alignment explanation
Indices: 22373676--22373824 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
22373666 TATGGTAACC
* * * *
22373676 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
22373740 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
22373756 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
22373821 CCGG
66 CCGG
22373825 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:22373766 original size:40 final size:38
Alignment explanation
Indices: 22373717--22373824 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
22373707 ATCACGATTT
*
22373717 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
22373757 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
22373797 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
22373825 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:22381876 original size:80 final size:80
Alignment explanation
Indices: 22381792--22381940 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
22381782 TATGGTAACC
* * * *
22381792 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
22381856 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
22381872 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
22381937 CCGG
66 CCGG
22381941 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Done.