Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 81 of 328
Found at i:22381882 original size:40 final size:38
Alignment explanation
Indices: 22381833--22381940 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
22381823 ATCACGATTT
*
22381833 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
22381873 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
22381913 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
22381941 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:22388194 original size:14 final size:14
Alignment explanation
Indices: 22388177--22388209 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
22388167 CGTCAGTATT
22388177 GAACTGTCATTCTA
1 GAACTGTCATTCTA
22388191 GAACTGTCATTCTA
1 GAACTGTCATTCTA
22388205 GAACT
1 GAACT
22388210 TGTTTGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (14 bp):
GAACTGTCATTCTA
Found at i:22392975 original size:14 final size:15
Alignment explanation
Indices: 22392953--22392982 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
22392943 GAATATTAAA
22392953 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
22392968 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
22392982 A
1 A
22392983 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:22395664 original size:80 final size:80
Alignment explanation
Indices: 22395580--22395728 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
22395570 TATGGTAACC
* * * *
22395580 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
22395644 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
22395660 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
22395725 CCGG
66 CCGG
22395729 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:22395670 original size:40 final size:38
Alignment explanation
Indices: 22395621--22395728 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
22395611 ATCACGATTT
*
22395621 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
22395661 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
22395701 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
22395729 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:22406296 original size:20 final size:18
Alignment explanation
Indices: 22406258--22406301 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
22406248 AAACCCTAAT
22406258 TTTCCC-TTTTCTTTTTC
1 TTTCCCTTTTTCTTTTTC
22406275 TTTCCCTTTTTCCTTCTTTC
1 TTTCCCTTTTT-CTT-TTTC
22406295 TTTCCCT
1 TTTCCCT
22406302 ACTAATCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
18 4 0.17
19 3 0.12
20 11 0.46
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCCCTTTTTCTTTTTC
Found at i:22407973 original size:46 final size:46
Alignment explanation
Indices: 22407700--22407973 Score: 381
Period size: 46 Copynumber: 6.0 Consensus size: 46
22407690 TTTGACATGA
* * * * *
22407700 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * *
22407746 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *
22407792 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCA-ATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTT-CATATCAGGT
* *
22407838 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCGGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
22407884 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
22407930 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
22407974 AGAGCACACT
Statistics
Matches: 211, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
45 6 0.03
46 203 0.96
47 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:22411530 original size:13 final size:13
Alignment explanation
Indices: 22411512--22411571 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 13
22411502 TTGGCAATGC
22411512 TTTTGAAAAGTGT
1 TTTTGAAAAGTGT
22411525 TTTTGAAAAGTG-
1 TTTTGAAAAGTGT
* *
22411537 CTGTGAAAAAGTGT
1 TTTTG-AAAAGTGT
* *
22411551 TTTT-AGAAGTGC
1 TTTTGAAAAGTGT
22411563 TTTTGAAAA
1 TTTTGAAAA
22411572 TTTTGATTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
12 13 0.35
13 22 0.59
14 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.40
Consensus pattern (13 bp):
TTTTGAAAAGTGT
Found at i:22411571 original size:25 final size:26
Alignment explanation
Indices: 22411509--22411571 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
22411499 AGTTTGGCAA
22411509 TGCTTTTGAAAAGTGTTTTTGAAAAG
1 TGCTTTTGAAAAGTGTTTTTGAAAAG
* *
22411535 TGC-TGTGAAAAAGTGTTTTT-AGAAG
1 TGCTTTTG-AAAAGTGTTTTTGAAAAG
22411560 TGCTTTTGAAAA
1 TGCTTTTGAAAA
22411572 TTTTGATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
25 14 0.44
26 18 0.56
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.40
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGTTTTTGAAAAG
Found at i:22415220 original size:23 final size:23
Alignment explanation
Indices: 22415190--22415235 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
22415180 CACTCAACTT
22415190 TAAAAAATTACAAAATGTCACTA
1 TAAAAAATTACAAAATGTCACTA
22415213 TAAAAAATTACAAAATGTCACTA
1 TAAAAAATTACAAAATGTCACTA
22415236 GATTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.13, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAAAATTACAAAATGTCACTA
Found at i:22417531 original size:46 final size:45
Alignment explanation
Indices: 22417478--22417653 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 45
22417468 TATTTGGGCA
22417478 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-GCGAGCG
* * * * * *
22417524 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGAGCGA-GCG
*
22417571 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-GCGAGCG
* *
22417617 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22417654 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.65
47 37 0.34
48 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAGCGAGCG
Found at i:22417633 original size:93 final size:93
Alignment explanation
Indices: 22417474--22417645 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
22417464 GGGATATTTG
* *
22417474 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCGAACTCGTTGAG
22417539 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
22417567 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCGAACTCGTTGAG
22417632 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
22417646 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:22419329 original size:22 final size:24
Alignment explanation
Indices: 22419301--22419347 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
22419291 CTTTACTAAA
22419301 AATTTTT-TT-ATCTCCTCTTTTT
1 AATTTTTCTTCATCTCCTCTTTTT
*
22419323 AATTTTTCTTCCATCTCTTCTTTTT
1 AATTTTTCTT-CATCTCCTCTTTTT
22419348 TTCAATGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
25 12 0.57
ACGTcount: A:0.13, C:0.21, G:0.00, T:0.66
Consensus pattern (24 bp):
AATTTTTCTTCATCTCCTCTTTTT
Found at i:22422002 original size:20 final size:20
Alignment explanation
Indices: 22421977--22422022 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
22421967 ACACAACAAT
*
22421977 AAAATAGT-AGAAACATCAGC
1 AAAATAGTGA-AAACAGCAGC
*
22421997 AAAATAGTGAAAACAGCAGT
1 AAAATAGTGAAAACAGCAGC
22422017 AAAATA
1 AAAATA
22422023 CAGCAGCAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.59, C:0.11, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAATAGTGAAAACAGCAGC
Found at i:22423218 original size:27 final size:27
Alignment explanation
Indices: 22423176--22423240 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
22423166 GAAGAAGGTG
22423176 ACAGGCGGCACAGGTGGAGGCCCTG-C
1 ACAGGCGGCACAGGTGGAGGCCCTGCC
** * *
22423202 ATCAGGCGGCATTGGTGGTGGGCCTGCC
1 A-CAGGCGGCACAGGTGGAGGCCCTGCC
22423230 ACAGGCGGCAC
1 ACAGGCGGCAC
22423241 CGATAGTGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.03
27 29 0.91
28 2 0.06
ACGTcount: A:0.17, C:0.29, G:0.42, T:0.12
Consensus pattern (27 bp):
ACAGGCGGCACAGGTGGAGGCCCTGCC
Found at i:22423355 original size:3 final size:3
Alignment explanation
Indices: 22423335--22423381 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
22423325 TTAATTTCGC
* *
22423335 GAA GAAA GAA GGA GAA GAA GAA -AA GAA GAA -AA GAA GAA GAA GGA
1 GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
22423379 GAA
1 GAA
22423382 AGAGGCGGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 4 0.11
3 30 0.81
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22423356 original size:16 final size:16
Alignment explanation
Indices: 22423335--22423381 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
22423325 TTAATTTCGC
22423335 GAAGAAAGAAGGAGAA
1 GAAGAAAGAAGGAGAA
*
22423351 GAAGAAAAGAA-GAAAA
1 GAAG-AAAGAAGGAGAA
22423367 GAAG-AAGAAGGAGAA
1 GAAGAAAGAAGGAGAA
22423382 AGAGGCGGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 5 0.19
15 4 0.15
16 12 0.44
17 6 0.22
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (16 bp):
GAAGAAAGAAGGAGAA
Found at i:22423363 original size:11 final size:12
Alignment explanation
Indices: 22423335--22423381 Score: 53
Period size: 11 Copynumber: 4.0 Consensus size: 12
22423325 TTAATTTCGC
*
22423335 GAAGAAAGAAGGA
1 GAAG-AAGAAGAA
22423348 GAAGAAGAA-AA
1 GAAGAAGAAGAA
22423359 GAAGAA-AAGAA
1 GAAGAAGAAGAA
*
22423370 GAAGAAGGAGAA
1 GAAGAAGAAGAA
22423382 AGAGGCGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 2 0.07
11 15 0.50
12 9 0.30
13 4 0.13
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAGAA
Found at i:22423370 original size:25 final size:24
Alignment explanation
Indices: 22423335--22423382 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
22423325 TTAATTTCGC
*
22423335 GAAGAAAGAAGGAGAAGAAGAAAA
1 GAAGAAAGAAGAAGAAGAAGAAAA
*
22423359 GAAGAAAAGAAGAAGAAGGAGAAA
1 GAAG-AAAGAAGAAGAAGAAGAAA
22423383 GAGGCGGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (24 bp):
GAAGAAAGAAGAAGAAGAAGAAAA
Found at i:22425135 original size:40 final size:40
Alignment explanation
Indices: 22425086--22425236 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
22425076 ATCACGATTT
*
22425086 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
22425126 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
22425166 GCATAAATGTCC-TCGGGACTTAGCCCGGAT-GTA-GCCACTA
1 GCACAAATG-CCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* *
22425206 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
22425237 TAATTTCCAG
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.03
40 87 0.95
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:22425174 original size:80 final size:80
Alignment explanation
Indices: 22425090--22425276 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
22425080 CGATTTGCAC
* * *
22425090 AAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTCGCACGAA-TGCCTTCGGGTCTTAGCCCG
1 AAATGCCTTCGGGACTTAGCCCGGATAGAA-GCACTAGCAC-AATTGCCTTCGGGTCTTAACCCG
*
22425153 GATATAATTACTAGCAT
64 GATATAATTACCAGCAT
*
22425170 AAATGTCC-TCGGGACTTAGCCCGGAT-GTAGCCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 AAATG-CCTTCGGGACTTAGCCCGGATAGAAG-CACTAGCACAATTGCCTTCGGGTCTTAACCCG
*
22425233 GATATAATTTCCAGCAT
64 GATATAATTACCAGCAT
* * *
22425250 TAACGTCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
22425277 TCATTCAATT
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 84 0.91
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCGGATAGAAGCACTAGCACAATTGCCTTCGGGTCTTAACCCGGA
TATAATTACCAGCAT
Found at i:22426431 original size:16 final size:16
Alignment explanation
Indices: 22426400--22426483 Score: 60
Period size: 16 Copynumber: 5.1 Consensus size: 16
22426390 ACCTTTTACA
*
22426400 AAAATAGTATAAAAAAT
1 AAAATACTA-AAAAAAT
*
22426417 AAAATATTAAAAAAAT
1 AAAATACTAAAAAAAT
**** * *
22426433 TTCTTAATGAAAAAAT
1 AAAATACTAAAAAAAT
*
22426449 AAAATACGAAAAGAAAT
1 AAAATACTAAAA-AAAT
*
22426466 AAAATACGAAAAAAAT
1 AAAATACTAAAAAAAT
22426482 AA
1 AA
22426484 CTTTTTTGGG
Statistics
Matches: 52, Mismatches: 14, Indels: 3
0.75 0.20 0.04
Matches are distributed among these distances:
16 28 0.54
17 24 0.46
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (16 bp):
AAAATACTAAAAAAAT
Found at i:22426862 original size:149 final size:147
Alignment explanation
Indices: 22426518--22427196 Score: 902
Period size: 149 Copynumber: 4.6 Consensus size: 147
22426508 CGGGTTTTTT
* * *
22426518 TACTAAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAAAATTT
1 TACTAAAATAATATAAAAATAAAATACTAAAATAGTATATTTTAAAAAATAAAATCCGAAAA-TA
* * * * *
22426583 AAAAAATACAAACAAAGGGCCAAGATCAGGGTTATTTACTAAATTAATATAAAAAATATTAAAAT
65 AAAAAATACCAACAAAGGGCCAAAATCAAGGTTATTTATTAAATTAATATAAAAAA-CTT-AAAT
22426648 AATACATTTGAAAC-----G
128 AATACATTTGAAACATTATG
* *
22426663 ----AAAATAATATAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCTGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACTAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
* *
22426724 AAAAATACCAACAAAGTGCCAAAATCAAGGTTATTTTTTAAATTAATATAAAAAACGCTTAAATA
66 AAAAATACCAACAAAGGGCCAAAATCAAGGTTATTTATTAAATTAATATAAAAAA--CTTAAATA
22426789 ATACATTTGAAACATTATG
129 ATACATTTGAAACATTATG
*
22426808 TACTAAAATAATATAAAAATAAAATACTAAAATAGTATATTTTAAAAATTAAAATCCGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACTAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
* * * * *
22426873 AAAAATACAAACAAAGGACCAAAATCAGGGTTATTTAATAAATTAATTAAAAAAACACTTAAATA
66 AAAAATACCAACAAAGGGCCAAAATCAAGGTTATTTATTAAATTAA-TATAAAAA-ACTTAAATA
22426938 ATACATTTGAAACATTATG
129 ATACATTTGAAACATTATG
* *
22426957 TACAAAAATAATAT--AAA-AAAATACTAAAATAATATATTTTAAAAAATAAAATCCGAAAATAA
1 TACTAAAATAATATAAAAATAAAATACTAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
* * *
22427019 AAAAATACCAACAAATGGCCAAAAT-AAGGGTTATTTATTCAATTAATATAAAGATACTTAAATA
66 AAAAATACCAACAAAGGGCCAAAATCAA-GGTTATTTATTAAATTAATATAAA-AAACTTAAATA
22427083 ATACATTTGAAACATTATG
129 ATACATTTGAAACATTATG
*
22427102 TACTAAAATAATATAAAAATAAAATA-TGAAAATAGTATATTTTAAAATATAAAATCAC-AAAAT
1 TACTAAAATAATATAAAAATAAAATACT-AAAATAGTATATTTTAAAAAATAAAATC-CGAAAAT
*
22427165 AAAAAAAAAAAACCAACAAAGGGCCAAAATCA
64 ---AAAAAAATACCAACAAAGGGCCAAAATCA
22427197 CCGAACAAAA
Statistics
Matches: 476, Mismatches: 35, Indels: 39
0.87 0.06 0.07
Matches are distributed among these distances:
140 69 0.14
141 60 0.13
145 48 0.10
146 82 0.17
147 7 0.01
148 37 0.08
149 139 0.29
150 7 0.01
151 26 0.05
152 1 0.00
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.27
Consensus pattern (147 bp):
TACTAAAATAATATAAAAATAAAATACTAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
AAAAATACCAACAAAGGGCCAAAATCAAGGTTATTTATTAAATTAATATAAAAAACTTAAATAAT
ACATTTGAAACATTATG
Found at i:22428410 original size:43 final size:43
Alignment explanation
Indices: 22428360--22428494 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 43
22428350 TCCCGGACGT
* *
22428360 GGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTATATGTAATTCAATATCGATGCCTATGTCCCAGACAC
* * * * *
22428403 GGTCTTATACG-AAATCAGATA-CGATGCCGATGTTCCAGACAT
1 GGTCTTATATGTAATTCA-ATATCGATGCCTATGTCCCAGACAC
* *
22428445 GGTCTTATATGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTATATGT-AAT-TCAATATCGATGCCTATGTCCCAGACAC
22428488 GGTCTTA
1 GGTCTTA
22428495 CACGATATCT
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
42 33 0.45
43 37 0.50
44 2 0.03
45 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (43 bp):
GGTCTTATATGTAATTCAATATCGATGCCTATGTCCCAGACAC
Found at i:22435736 original size:43 final size:41
Alignment explanation
Indices: 22435630--22435744 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 41
22435620 GTAATTCAAT
* *
22435630 ATCGATGCCTCTGTCCCAGACAGGGTCTTATACAAAATCAG
1 ATCGATGCCTGTGTCCCAGACACGGTCTTATACAAAATCAG
*
22435671 ATACGATGCC-GATGTCCCAGACATGGTCTTATACATAAATCTCA-
1 AT-CGATGCCTG-TGTCCCAGACACGGTCTTATACA-AAA--TCAG
* *
22435715 ATCGAGGCCTGTGTCCTAGACACGGTCTTA
1 ATCGATGCCTGTGTCCCAGACACGGTCTTA
22435745 CACGATATCT
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
41 2 0.03
42 29 0.46
43 26 0.41
44 3 0.05
45 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (41 bp):
ATCGATGCCTGTGTCCCAGACACGGTCTTATACAAAATCAG
Found at i:22438282 original size:40 final size:39
Alignment explanation
Indices: 22438114--22438293 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
22438104 AGAAATTGAA
* *
22438114 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
22438154 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
22438194 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
22438234 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
22438274 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
22438294 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:22445502 original size:40 final size:39
Alignment explanation
Indices: 22445334--22445504 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
22445324 AGAAATTGAA
* *
22445334 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
22445374 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
22445414 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
22445454 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
22445494 TGATATCCGGG
1 TGATATCCGGG
22445505 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:22452710 original size:40 final size:39
Alignment explanation
Indices: 22452610--22452714 Score: 147
Period size: 40 Copynumber: 2.6 Consensus size: 39
22452600 TGAAATTTAT
* * *
22452610 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGCTAA
* *
22452650 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAGCTAA
22452690 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
22452715 TGTCCAAATC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.05
40 56 0.95
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGCTAA
Found at i:22452734 original size:40 final size:39
Alignment explanation
Indices: 22452566--22452736 Score: 132
Period size: 40 Copynumber: 4.3 Consensus size: 39
22452556 AGAAATTGAA
* * *
22452566 TGATATCCGGGCTAAGCCCCGAAGACAATTATG-CTGAAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TGTC-CAAATG
* * * * * *
22452606 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTCCAAAT-G
* * *
22452646 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTCCAA-ATG
* *
22452686 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTCCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTCCAAAT-G
22452726 TGATATCCGGG
1 TGATATCCGGG
22452737 TAAAGTCCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
38 4 0.04
39 4 0.04
40 94 0.90
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTCCAAATG
Found at i:22457675 original size:21 final size:21
Alignment explanation
Indices: 22457651--22457713 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
22457641 TAAACTATTA
22457651 ATTTTCAAAAGAAAACAGAGG
1 ATTTTCAAAAGAAAACAGAGG
* *
22457672 ATTTCCAAAATAAAACAGAGG
1 ATTTTCAAAAGAAAACAGAGG
* * *
22457693 ATTTTTAATAGAAAACTGAGG
1 ATTTTCAAAAGAAAACAGAGG
22457714 CGTCTATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (21 bp):
ATTTTCAAAAGAAAACAGAGG
Found at i:22466730 original size:29 final size:29
Alignment explanation
Indices: 22466667--22466828 Score: 146
Period size: 29 Copynumber: 5.6 Consensus size: 29
22466657 GATGGTTGAA
* *
22466667 ACCATCCCTTTTCATTAATCGATGGTCTTC
1 ACCATCCCTTTTCA-TAATTGATGGTCGTC
* * *
22466697 ACCATCCCTTTTCATAGTTAATGGCCGTC
1 ACCATCCCTTTTCATAATTGATGGTCGTC
* * ** * *
22466726 ACCATCCTTTTTCATAATTAATATTTG-A
1 ACCATCCCTTTTCATAATTGATGGTCGTC
** * *
22466754 AGATATCCATTTTCATATTTGATGGTCGTC
1 A-CCATCCCTTTTCATAATTGATGGTCGTC
* *
22466784 ACCATCCCTTTTCATAGTTGATGGTTGTC
1 ACCATCCCTTTTCATAATTGATGGTCGTC
22466813 ACCATCCCTTTTCATA
1 ACCATCCCTTTTCATA
22466829 TTCGATAGCT
Statistics
Matches: 104, Mismatches: 26, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
28 1 0.01
29 88 0.85
30 15 0.14
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (29 bp):
ACCATCCCTTTTCATAATTGATGGTCGTC
Found at i:22466825 original size:58 final size:58
Alignment explanation
Indices: 22466628--22466830 Score: 176
Period size: 58 Copynumber: 3.5 Consensus size: 58
22466618 TGTGCTAAAC
* * ** * ** *
22466628 GATGGTTGTAATCGTCCCTTTTCATATGAGATGGTTGAAACCATCCCTTTTCATTAATC
1 GATGGTTGTAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCA-TAATT
* * * * *
22466687 GATGGTCT-TCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCTTTTTCATAATT
1 GATGGT-TGTAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATT
* ** ** * *
22466745 AATATTTG-AAGATATCCATTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAGTT
1 GATGGTTGTAA-CCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATT
*
22466803 GATGGTTGTCACCATCCCTTTTCATATT
1 GATGGTTGTAACCATCCCTTTTCATATT
22466831 CGATAGCTAA
Statistics
Matches: 108, Mismatches: 32, Indels: 9
0.72 0.21 0.06
Matches are distributed among these distances:
57 2 0.02
58 65 0.60
59 40 0.37
60 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (58 bp):
GATGGTTGTAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATT
Found at i:22466848 original size:87 final size:87
Alignment explanation
Indices: 22466687--22466856 Score: 225
Period size: 87 Copynumber: 2.0 Consensus size: 87
22466677 TTCATTAATC
* * **
22466687 GATGGTCTTCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCTTTTTCATAATTAATATTT
1 GATGGTCGTCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCCTTTTCATAATTAATAGCT
*
22466752 GAAGATATCCATTTTCATATTT
66 AAAGATATCCATTTTCATATTT
* ** *
22466774 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTTGTCACCATCCCTTTTCAT-ATTCGATAGC
1 GATGGTCGTCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCCTTTTCATAATT-AATAGC
* *
22466838 TAAAGCTATCCCTTTTCAT
65 TAAAGATATCCATTTTCAT
22466857 TGGTCGATGA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
86 3 0.04
87 68 0.96
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (87 bp):
GATGGTCGTCACCATCCCTTTTCATAGTTAATGGCCGTCACCATCCCTTTTCATAATTAATAGCT
AAAGATATCCATTTTCATATTT
Found at i:22473348 original size:414 final size:413
Alignment explanation
Indices: 22472570--22473396 Score: 1280
Period size: 414 Copynumber: 2.0 Consensus size: 413
22472560 GCAACAATAT
* *
22472570 TTTCGAAGATTGGTCTGAGATCTAGTTATTATCAATTGCGGGTTAAAGATTCGAATGTGCCAAAA
1 TTTCGAAGATTGATCTGAGATCTAGTTATTATCAATTGCGGGATAAAGATTCGAATGTGCCAAAA
* *
22472635 AATGCGTTCAAAACCATGTACGGGCATTATGAATTTCTTGTTTGCCATTTGGGTTAACTAACGCT
66 AATGCGTTCAAAACCAGGTACAGGCATTATGAATTTCTTGTTTGCCATTTGGGTTAACTAACGCT
* * * * *
22472700 TCTGTAGTTTTTATGGACTTAACGAATAGAATTTTTAGACTGCATTTAGATAGATTTGTAGTTGT
131 TCTGCAATTTTTATGGACTTAACGAATAGAATTTTCAGACTGCATTTAGACAAATTTGTAGTTGT
***
22472765 ATTCTTTGATGACATACTAATCTATTCTCGATACAAATCTGAGCATGTTGAGCATTTGAGGATTG
196 ATTCTTTGATGACATACTAATCTATTCTCGATACAAATCTGAGCATGCCAAGCATTTGAGGATTG
* * *
22472830 TGTTACAAACGTTGAGAGATAAGCAGCTATTTGCTAAATTTAGTAAATTCGAATTTTGGCTCTAG
261 TATTACAAACATTGAGAGATAAGCAGCTATTTGCTAAATTTAGTAAATGCGAATTTTGGCTCTAG
** * *
22472895 GAAGTTGGATTTTTGGGACACATTGTTTCGGCGGAAGGCACCAGAGTTGATCTGAGCAAGATGTC
326 GAAGTTAAATTTTTGGGACACATTGTTTCGGCAGAAGGCACCAGAGTTGATCCGAGCAAGATGTC
22472960 AGCGGTTGTTGACTGGAAAACAC
391 AGCGGTTGTTGACTGGAAAACAC
* * * * * * **
22472983 TTTCGAAGATTTATCTGAGATCTGGTTATTATCAGTTGTGGGATAAAGATTCGGATGTGTCGGAA
1 TTTCGAAGATTGATCTGAGATCTAGTTATTATCAATTGCGGGATAAAGATTCGAATGTGCCAAAA
* * *
22473048 ACTGCGTTCAAAACTAGGTACAGGCATTATGAATTTCTTGTTATGCCGTTTGGGTTAACTAACGC
66 AATGCGTTCAAAACCAGGTACAGGCATTATGAATTTCTTGTT-TGCCATTTGGGTTAACTAACGC
*
22473113 -TCTTGCAATTTTTATGGACTTAACGAATAGAATTTTCAGACTGTATTTAGACAAATTTGTAGTT
130 TTC-TGCAATTTTTATGGACTTAACGAATAGAATTTTCAGACTGCATTTAGACAAATTTGTAGTT
22473177 GTATTCTTTGATGACATAC-AGATCTATTCTCGATACAAATCTGAGCATGCCAAGCATTTGAGGA
194 GTATTCTTTGATGACATACTA-ATCTATTCTCGATACAAATCTGAGCATGCCAAGCATTTGAGGA
*
22473241 TTGTATTACAAACATTGAGAGATAAGCAGCTGTTTGCTAAATTTAGTAAATGCGAATTTTGGCTC
258 TTGTATTACAAACATTGAGAGATAAGCAGCTATTTGCTAAATTTAGTAAATGCGAATTTTGGCTC
* ** *
22473306 TGGGAAGTTAAATTTTTGGGACACATTGTTTTTGCAGAAGGCATCAGAGTTGATCCGAGCAAGAT
323 TAGGAAGTTAAATTTTTGGGACACATTGTTTCGGCAGAAGGCACCAGAGTTGATCCGAGCAAGAT
*
22473371 TTCAGCGGTTGTTGACTGGAAAACAC
388 GTCAGCGGTTGTTGACTGGAAAACAC
22473397 CAAGAAATGT
Statistics
Matches: 374, Mismatches: 37, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
413 96 0.26
414 278 0.74
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (413 bp):
TTTCGAAGATTGATCTGAGATCTAGTTATTATCAATTGCGGGATAAAGATTCGAATGTGCCAAAA
AATGCGTTCAAAACCAGGTACAGGCATTATGAATTTCTTGTTTGCCATTTGGGTTAACTAACGCT
TCTGCAATTTTTATGGACTTAACGAATAGAATTTTCAGACTGCATTTAGACAAATTTGTAGTTGT
ATTCTTTGATGACATACTAATCTATTCTCGATACAAATCTGAGCATGCCAAGCATTTGAGGATTG
TATTACAAACATTGAGAGATAAGCAGCTATTTGCTAAATTTAGTAAATGCGAATTTTGGCTCTAG
GAAGTTAAATTTTTGGGACACATTGTTTCGGCAGAAGGCACCAGAGTTGATCCGAGCAAGATGTC
AGCGGTTGTTGACTGGAAAACAC
Found at i:22475904 original size:2 final size:2
Alignment explanation
Indices: 22475899--22475932 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
22475889 TTCGCCACAC
22475899 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22475933 CTGTTCTGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22482845 original size:2 final size:2
Alignment explanation
Indices: 22482838--22482869 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22482828 GCTTCGCCAC
22482838 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22482870 CTGTTCTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22493850 original size:73 final size:73
Alignment explanation
Indices: 22493730--22493874 Score: 272
Period size: 73 Copynumber: 2.0 Consensus size: 73
22493720 TAATTATAGT
22493730 AAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTACGTGGTTGTAATTTGGCCTTACT
1 AAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTACGTGGTTGTAATTTGGCCTTACT
22493795 CTCTTTAC
66 CTCTTTAC
* *
22493803 AAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTAGGTGGTTGTAATTTGGCCTTATT
1 AAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTACGTGGTTGTAATTTGGCCTTACT
22493868 CTCTTTA
66 CTCTTTA
22493875 TAAATGAAGG
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.38
Consensus pattern (73 bp):
AAGTAAAACTTGGTCATCACTAATTAAAATAGAAAATATTTACGTGGTTGTAATTTGGCCTTACT
CTCTTTAC
Found at i:22501003 original size:30 final size:30
Alignment explanation
Indices: 22500963--22501020 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
22500953 AAGACTATTT
* *
22500963 CCACATGGGCT-GAGCACACGCCCTTGTGAG
1 CCACACGGGCTGGA-CACACGCCCGTGTGAG
22500993 CCACACGGGCTGGACACACGCCCGTGTG
1 CCACACGGGCTGGACACACGCCCGTGTG
22501021 GCAACCCGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.19, C:0.36, G:0.31, T:0.14
Consensus pattern (30 bp):
CCACACGGGCTGGACACACGCCCGTGTGAG
Found at i:22509765 original size:23 final size:23
Alignment explanation
Indices: 22509708--22509790 Score: 97
Period size: 23 Copynumber: 3.9 Consensus size: 23
22509698 TGATCAGTAA
22509708 ACGACACAT-AAGTGCCTGAAAT
1 ACGACACATAAAGTGCCTGAAAT
*
22509730 --GACAC---AAGAGCCTGAAAT
1 ACGACACATAAAGTGCCTGAAAT
* *
22509748 ACGTCACATAAAGTGCCTGATAT
1 ACGACACATAAAGTGCCTGAAAT
22509771 ACGACACATAAAGTGCCTGA
1 ACGACACATAAAGTGCCTGA
22509791 TCGGCAAAGC
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
18 12 0.24
20 9 0.18
23 30 0.59
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.18
Consensus pattern (23 bp):
ACGACACATAAAGTGCCTGAAAT
Found at i:22510751 original size:9 final size:9
Alignment explanation
Indices: 22510703--22510733 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
22510693 GAATGCTCTC
22510703 TGTTTC-TT
1 TGTTTCTTT
22510711 TGTTTCTTT
1 TGTTTCTTT
22510720 TGTTTCTTT
1 TGTTTCTTT
22510729 TGTTT
1 TGTTT
22510734 TATGTTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 6 0.27
9 16 0.73
ACGTcount: A:0.00, C:0.10, G:0.13, T:0.77
Consensus pattern (9 bp):
TGTTTCTTT
Found at i:22510767 original size:31 final size:31
Alignment explanation
Indices: 22510709--22510767 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
22510699 TCTCTGTTTC
* * **
22510709 TTTGTTTCTTTTGTTTCTTTTGTTTTATGTT
1 TTTGTTTCTTTTATTTCATTTACTTTATGTT
22510740 TTTGTTTCTTTTATTTCATTTACTTTAT
1 TTTGTTTCTTTTATTTCATTTACTTTAT
22510768 ATTATTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.75
Consensus pattern (31 bp):
TTTGTTTCTTTTATTTCATTTACTTTATGTT
Found at i:22510993 original size:3 final size:3
Alignment explanation
Indices: 22510987--22511052 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
22510977 AATTATAAAT
22510987 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22511035 TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA
22511053 ATATCTATTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:22511211 original size:19 final size:22
Alignment explanation
Indices: 22511174--22511216 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 22
22511164 AAAATCTTAT
22511174 AATATAGTTATTTAATT-AATA
1 AATATAGTTATTTAATTAAATA
*
22511195 AATATA-TT-TTTACTTAAATA
1 AATATAGTTATTTAATTAAATA
22511215 AA
1 AA
22511217 AAGTAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 8 0.40
21 6 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
AATATAGTTATTTAATTAAATA
Found at i:22515740 original size:46 final size:46
Alignment explanation
Indices: 22515690--22515782 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
22515680 ATATTATTTA
22515690 CCCACACTAATTAAAATAGAAAATATTTAGTTGGTTGTAATTTGGC
1 CCCACACTAATTAAAATAGAAAATATTTAGTTGGTTGTAATTTGGC
22515736 CCCACACTAATTAAAATAGAAAATATTTAGTTGGTTGTAATTTGGC
1 CCCACACTAATTAAAATAGAAAATATTTAGTTGGTTGTAATTTGGC
22515782 C
1 C
22515783 TTACTCTCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (46 bp):
CCCACACTAATTAAAATAGAAAATATTTAGTTGGTTGTAATTTGGC
Found at i:22523682 original size:42 final size:42
Alignment explanation
Indices: 22523579--22523738 Score: 126
Period size: 42 Copynumber: 3.7 Consensus size: 42
22523569 AAGCTCGTAC
* ** * *
22523579 AATGCCAACGTCCCAGATGTGGTCTTACATGTAAAC-AAATATT
1 AATGCCAATGTCCCAGACATGGTCTTACACG-AAACTAAA-ATA
* * * * *
22523622 GATGCCACTATCTCAGACAGGGTCTTACACGAAA-TAAAATAA
1 AATGCCAATGTCCCAGACATGGTCTTACACGAAACTAAAAT-A
* * * *
22523664 AATGCCGATGTCCCAGACATGGTCTTACACTTAAATCTCAAATC
1 AATGCCAATGTCCCAGACATGGTCTTACAC-GAAA-CTAAAATA
*
22523708 GATGCCAATGTCCCAGACATGGTCTTACACG
1 AATGCCAATGTCCCAGACATGGTCTTACACG
22523739 GAATCACATA
Statistics
Matches: 90, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 25 0.28
44 28 0.31
45 5 0.06
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
AATGCCAATGTCCCAGACATGGTCTTACACGAAACTAAAATA
Found at i:22523763 original size:44 final size:44
Alignment explanation
Indices: 22523580--22523746 Score: 132
Period size: 43 Copynumber: 3.9 Consensus size: 44
22523570 AGCTCGTACA
* ** *
22523580 ATGCCAACGTCCCAGATGTGGTCTTACA-TGTAAA-CA-AATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACTG-AAATCACAA-ATCG
* * * * **
22523623 ATGCCACTATCTCAGACAGGGTCTTACAC-GAAAT-A-AAATAAA
1 ATGCCAATGTCCCAGACATGGTCTTACACTGAAATCACAAAT-CG
* * *
22523665 ATGCCGATGTCCCAGACATGGTCTTACACTTAAATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACTGAAATCACAAATCG
*
22523709 ATGCCAATGTCCCAGACATGGTCTTACAC-GGAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACTGAAATCACA
22523747 TATCAGAATC
Statistics
Matches: 96, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.02
42 30 0.31
43 32 0.33
44 28 0.29
45 4 0.04
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACTGAAATCACAAATCG
Found at i:22524670 original size:17 final size:17
Alignment explanation
Indices: 22524645--22524679 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
22524635 AATAAACATT
*
22524645 TAAAGTTATAATAGATG
1 TAAACTTATAATAGATG
22524662 TAAACTTATAATAGATG
1 TAAACTTATAATAGATG
22524679 T
1 T
22524680 CCAACAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (17 bp):
TAAACTTATAATAGATG
Found at i:22529504 original size:50 final size:50
Alignment explanation
Indices: 22529385--22529813 Score: 345
Period size: 50 Copynumber: 8.6 Consensus size: 50
22529375 GTTGTGAGAA
* * *
22529385 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* * *
22529437 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
22529487 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * * * * *
22529537 CCCGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
22529587 CACGTATGTAGTACTAAGTGCATGCTACTACGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * ** * *
22529637 CGCATGTGTAGTACTAAGTGCGGGCT--T-TGCCTACC-G-TTAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTT-AGGT
* * * * * * *
22529684 CACGTGTGTAGTACTAAGTGCAAGCTACTACGAGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
22529734 CACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATACGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
22529784 CGCATGTGTAGTACTAAGTGCAAGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
22529814 TTCGTACCAG
Statistics
Matches: 299, Mismatches: 65, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
45 2 0.01
46 1 0.00
47 29 0.10
48 5 0.02
49 9 0.03
50 216 0.72
51 5 0.02
52 32 0.11
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:22529748 original size:147 final size:148
Alignment explanation
Indices: 22529435--22529810 Score: 495
Period size: 147 Copynumber: 2.5 Consensus size: 148
22529425 ACAGTTTTAG
* * * *
22529435 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTATGACACATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCAGATTGATACGTCGCATGTGTAGTA
* ** * * * *
22529500 CTAAGTGCAGGCTACTATGCGTACCGATAGTTTCGATCCCGTGTGTAGTACTAAGTGTAGGCTAC
65 CTAAGTGCAGGCTA-TATGCCTACCGATAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTAC
* * * *
22529565 TATGTGTATCAGATGGTTAG
129 TACGAGTATCAGATGGATAA
* * *
22529585 GTCACGTATGTAGTACTAAGTGCATGCTACTACGTGTACCGGATTGATAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCAGATTGATACGTCGCATGTGTAGTA
* *
22529650 CTAAGTGCGGGCT-T-TGCCTACCGTTAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTACT
65 CTAAGTGCAGGCTATATGCCTACCGATAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTACT
22529713 ACGAGTATCAGATGGATAA
130 ACGAGTATCAGATGGATAA
* *
22529732 GTCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATACGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAG-CTACTACGTGTACCAGATTGATACGTCGCATGTGTAGTA
*
22529797 CTAAGTGCAAGCTA
65 CTAAGTGCAGGCTA
22529811 CTATTCGTAC
Statistics
Matches: 197, Mismatches: 27, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
146 1 0.01
147 125 0.63
148 1 0.01
150 70 0.36
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (148 bp):
GTCACGTGTGTAGTACTAAGTGCAGCTACTACGTGTACCAGATTGATACGTCGCATGTGTAGTAC
TAAGTGCAGGCTATATGCCTACCGATAACTTCAATCACGTGTGTAGTACTAAGTGCAAGCTACTA
CGAGTATCAGATGGATAA
Found at i:22530045 original size:16 final size:16
Alignment explanation
Indices: 22530024--22530055 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22530014 AGAATGGAGT
22530024 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
22530040 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
22530056 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:22533301 original size:15 final size:14
Alignment explanation
Indices: 22533281--22533340 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
22533271 TATGATATTA
22533281 TATCTTGGATTTTCT
1 TATCTTGGA-TTTCT
22533296 TATCTTGGATTTCT
1 TATCTTGGATTTCT
* *
22533310 CTATCTTAGACTTCT
1 -TATCTTGGATTTCT
*
22533325 TAATCTTGGTTTTCT
1 T-ATCTTGGATTTCT
22533340 T
1 T
22533341 GTTATCTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.15, C:0.17, G:0.12, T:0.57
Consensus pattern (14 bp):
TATCTTGGATTTCT
Found at i:22536427 original size:50 final size:50
Alignment explanation
Indices: 22536300--22536694 Score: 339
Period size: 50 Copynumber: 7.8 Consensus size: 50
22536290 GTTGTGAGAA
** * *
22536300 CACATGTGTAGTACTCTGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCG--T-A-CCAGATTGTTAGGT
* * * * * * *
22536352 CACGTGTGCAGTACTGAGTGCAGGCTACTACGTGTACCAAATTGTTAGGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGTTAGGT
* * * * *
22536402 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCA-ATAGTTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCAGATTG-TTAGGT
* * ** * *
22536453 CACGTGTGTAGTACTAAGTGTAGGCTACTACCCGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGTTAGGT
* * * *
22536503 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGTTAGGT
** * * * *
22536553 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GTTTACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATT-GTTAGGT
** * * *
22536604 CATGTGTGTAGTACTAAGTGCGGGCTACTATGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGTTAGGT
* *
22536654 CGCATGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
22536695 GAGCTTCGGT
Statistics
Matches: 275, Mismatches: 60, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
48 2 0.01
49 3 0.01
50 162 0.59
51 79 0.29
52 29 0.11
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGTTAGGT
Found at i:22536500 original size:101 final size:102
Alignment explanation
Indices: 22536300--22536532 Score: 263
Period size: 101 Copynumber: 2.3 Consensus size: 102
22536290 GTTGTGAGAA
** * *** * *
22536300 CACATGTGTAGTACTCTGTGCAGGCTACTATGTGT-TTAAGACAGTTTTAGGTCACGTGTGCAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAGTTTTAGATCACGTGTGCAGT
* ** *
22536364 ACTGAGTGCAGGCTACTACGTGTACCAAATTGTTAGGC
65 ACTAAGTGCAGGCTACTACCCGTACCAAATGGTTAGGC
* * *
22536402 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCAATAGTTTT-GATCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAGTTTTAGATCACGTGTGCAGTA
* * * *
22536466 CTAAGTGTAGGCTACTACCCGTATCAGATGGTTAGGT
66 CTAAGTGCAGGCTACTACCCGTACCAAATGGTTAGGC
*
22536503 CACGTGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
22536533 CGTGTACCAG
Statistics
Matches: 108, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
101 70 0.65
102 37 0.34
103 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (102 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAATAGTTTTAGATCACGTGTGCAGTA
CTAAGTGCAGGCTACTACCCGTACCAAATGGTTAGGC
Found at i:22536611 original size:101 final size:101
Alignment explanation
Indices: 22536506--22536690 Score: 334
Period size: 101 Copynumber: 1.8 Consensus size: 101
22536496 GTTAGGTCAC
* *
22536506 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAG
22536571 TGCAGGCTACTATGCGTACTCGTTTACTTCGATCAT
66 TGCAGGCTACTATGCGTACTCGTTTACTTCGATCAT
* *
22536607 GTGTGTAGTACTAAGTGCGGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAG
22536672 TGCAGGCTACTATGCGTAC
66 TGCAGGCTACTATGCGTAC
22536691 CAGAGAGCTT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 80 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAG
TGCAGGCTACTATGCGTACTCGTTTACTTCGATCAT
Found at i:22536620 original size:151 final size:151
Alignment explanation
Indices: 22536346--22536694 Score: 448
Period size: 151 Copynumber: 2.3 Consensus size: 151
22536336 TAAGACAGTT
* * * *
22536346 TTAGGTCACGTGTGCAGTACTGAGTGCAGGCTACTACGTGTACCAAATTGTTAGGCCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGCCGCATGTGT
* * * *
22536411 AGTACTAAGTGTAGGCTACTATGCGTACCCAATAGTTTTGATCACGTGTGTAGTACTAAGTGTAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
*
22536476 GCTACTACCCGTATCAGATGG
131 GCTACTACCCGTACCAGATGG
**
22536497 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGCCGCATGTGT
*** * *
22536562 AGTACTAAGTGCAGGCTACTATGCGTACTCGTTTA-CTTCGATCATGTGTGTAGTACTAAGTGCG
66 AGTACTAAGTGCAGGCTACTATGCGTAC-CCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCA
*** *
22536626 GGCTACTATGTGTACCAGATTG
130 GGCTACTACCCGTACCAGATGG
* * * * * *
22536648 ATAGGTCGCATGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
22536695 GAGCTTCGGT
Statistics
Matches: 171, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
151 168 0.98
152 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGCCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCAATAGCTTCGATCACGTGTGTAGTACTAAGTGCAG
GCTACTACCCGTACCAGATGG
Found at i:22536702 original size:101 final size:101
Alignment explanation
Indices: 22536457--22536702 Score: 320
Period size: 101 Copynumber: 2.4 Consensus size: 101
22536447 TTTGATCACG
* ** * * *
22536457 TGTGTAGTACTAAGTGTAGGCTACTACCCGTATCAGATG-G-TTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA-GAGCTTCGATCACGTGTGTAGTACTAA
*
22536520 GTGCAGGCTACTACGTGTACCAGATTGATAGGTTGCA
65 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
** *
22536557 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GTTTA-CTTCGATCATGTGTGTAGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAG-AGAGCTTCGATCACGTGTGTAGTACTA
* *
22536620 AGTGCGGGCTACTATGTGTACCAGATTGATAGGTCGCA
64 AGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
*
22536658 TGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTCG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTCG
22536703 GTTACAAAGG
Statistics
Matches: 125, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
100 32 0.26
101 93 0.74
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAGAGCTTCGATCACGTGTGTAGTACTAAG
TGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
Found at i:22536915 original size:16 final size:16
Alignment explanation
Indices: 22536894--22536925 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22536884 AGAATGGAGT
22536894 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
22536910 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
22536926 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:22537554 original size:180 final size:180
Alignment explanation
Indices: 22537249--22537605 Score: 549
Period size: 180 Copynumber: 2.0 Consensus size: 180
22537239 TTCAAGAGCT
* * * * * * *
22537249 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGATCTGTTGGATAGTGAAACATGGGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTTGGACACTAAAACAGGGGTA
*
22537314 TTTTTAATGAATAAACTGTACTAATTGGCTAAACTAAAAATTCTGAAAATTTTATGGTAAGAATA
66 TTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
* *
22537379 TA-AGTTAGTCGAGTTTCTAG-GAAAATTAGT-GATTCTTAATTTGGAGTCCC
131 TATA-TGAGTCGAGTTTC-AGAGAAAATTAATGGA-TCTTAATTTGGAGTCCC
*
22537429 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTTGGACACTAAAATAGGGGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTTGGACACTAAAACAGGGGTA
*
22537494 TTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTTTGGTAAGAATA
66 TTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
*
22537559 TATATGAGTCTAGTTTCAGAGAAAATTAATGGATCTTAATTTGGAGT
131 TATATGAGTCGAGTTTCAGAGAAAATTAATGGATCTTAATTTGGAGT
22537606 TTCATAGCTT
Statistics
Matches: 161, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
179 2 0.01
180 156 0.97
181 3 0.02
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (180 bp):
GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTTGGACACTAAAACAGGGGTA
TTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
TATATGAGTCGAGTTTCAGAGAAAATTAATGGATCTTAATTTGGAGTCCC
Found at i:22541339 original size:28 final size:28
Alignment explanation
Indices: 22541307--22541405 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
22541297 GCAATAAGCC
*
22541307 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
22541335 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
22541363 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
22541392 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22541406 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:22549023 original size:28 final size:28
Alignment explanation
Indices: 22548991--22549089 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
22548981 GCAATAAGCC
*
22548991 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
22549019 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
22549047 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
22549076 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22549090 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:22550602 original size:40 final size:40
Alignment explanation
Indices: 22550520--22550776 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
22550510 AAGCCAAGTA
* * * *
22550520 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
22550558 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
22550598 CCTTCGGGACTTAGCCCGGATATAGTAGCTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
22550638 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22550678 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
22550718 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
22550758 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22550777 TTATCATCCG
Statistics
Matches: 195, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 166 0.85
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22552709 original size:29 final size:29
Alignment explanation
Indices: 22552675--22552806 Score: 158
Period size: 29 Copynumber: 4.6 Consensus size: 29
22552665 TACTCGATTT
* * *
22552675 CGCACACTTAGTGCCATGTGATTT-AAGCC
1 CGCACACTTAGTGCCATAT-ATTTCCAGCA
* *** * *
22552704 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
22552733 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
22552762 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
22552791 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
22552807 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:22560178 original size:29 final size:29
Alignment explanation
Indices: 22560144--22560275 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
22560134 TACTCGATTT
** * *
22560144 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
22560173 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
22560202 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
22560231 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
22560260 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
22560276 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:22567020 original size:4 final size:4
Alignment explanation
Indices: 22567011--22567166 Score: 312
Period size: 4 Copynumber: 39.0 Consensus size: 4
22567001 TTACTACTAA
22567011 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
22567059 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
22567107 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
22567155 TATG TATG TATG
1 TATG TATG TATG
22567167 CATTTTTTTT
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 152 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:22582014 original size:49 final size:49
Alignment explanation
Indices: 22581951--22582282 Score: 376
Period size: 49 Copynumber: 6.7 Consensus size: 49
22581941 CTGGTATGCA
*
22581951 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * * * ** *
22582000 TCGTACCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * *
22582050 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* * **
22582101 TAGTAGCCTGCACTCAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * * * * *
22582150 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATCTGGTACACG
* *
22582201 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* *
22582250 TAGTAACCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
22582283 TCACAATAGT
Statistics
Matches: 231, Mismatches: 47, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
49 107 0.46
50 48 0.21
51 76 0.33
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:22582164 original size:100 final size:100
Alignment explanation
Indices: 22581951--22582280 Score: 448
Period size: 100 Copynumber: 3.3 Consensus size: 100
22581941 CTGGTATGCA
* * * * * * * * *
22581951 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCTGGTACACGTCGTACCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGTAGCCTGCACT
* * * *
22582014 TAGTACTACACACGTGACCTAACCATCTGATACACG
66 TAGTACTACACATGCGACC-AACAATCTGGTACACG
22582050 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGTAGCCTGCACT
*
22582115 CAGTACTACACATGCGACCAACAATCTGGTACACG
66 TAGTACTACACATGCGACCAACAATCTGGTACACG
* * *
22582150 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGTAGCCTGCACT
** *
22582215 TAGTACTACACATGCGACCAATTATCCGGTACACG
66 TAGTACTACACATGCGACCAACAATCTGGTACACG
*
22582250 TAGTAACCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
22582281 CCTCACAATA
Statistics
Matches: 207, Mismatches: 22, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
99 29 0.14
100 140 0.68
101 38 0.18
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGTAGCCTGCACT
TAGTACTACACATGCGACCAACAATCTGGTACACG
Found at i:22592979 original size:42 final size:41
Alignment explanation
Indices: 22592932--22593045 Score: 104
Period size: 44 Copynumber: 2.7 Consensus size: 41
22592922 GATGTCACTA
* *
22592932 TCCCAGACAGGGTCTTACACGAAATCAAATTCGATACCGATG
1 TCCCAGACAGGGTCTTACACGAAATCAAA-TCGATACCAACG
* * * *
22592974 TCCCAGACATGGACTTACACATAAACGTCAAATCGATGCCAACG
1 TCCCAGACAGGGTCTTACAC-GAAA--TCAAATCGATACCAACG
* *
22593018 TCCTAGAC-GTGCTCTTACACGAAATCAA
1 TCCCAGACAG-GGTCTTACACGAAATCAA
22593046 CGACTTTCGA
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
41 4 0.07
42 18 0.32
43 6 0.11
44 24 0.42
45 5 0.09
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (41 bp):
TCCCAGACAGGGTCTTACACGAAATCAAATCGATACCAACG
Found at i:22595456 original size:46 final size:45
Alignment explanation
Indices: 22595386--22595491 Score: 151
Period size: 46 Copynumber: 2.3 Consensus size: 45
22595376 AGACTCACCA
*
22595386 TAGCTCATTGGAGCTTACCAATTCAGCTC-ATAAGACCTTACTATTT
1 TAGCTCATTGGAGCTAACCAATTCAGCTCGAT-AGACCTTACTA-TT
* * *
22595432 TAGCTCATTGGAGGTAACCGATTCAGCTCGATAGAGCTTACTATT
1 TAGCTCATTGGAGCTAACCAATTCAGCTCGATAGACCTTACTATT
22595477 TAGCTCATTGGAGCT
1 TAGCTCATTGGAGCT
22595492 TACCGTTTTA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
45 16 0.30
46 36 0.67
47 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (45 bp):
TAGCTCATTGGAGCTAACCAATTCAGCTCGATAGACCTTACTATT
Found at i:22595513 original size:23 final size:23
Alignment explanation
Indices: 22595386--22595517 Score: 94
Period size: 23 Copynumber: 5.8 Consensus size: 23
22595376 AGACTCACCA
* *
22595386 TAGCTCATTGGAGCTTACCAATT
1 TAGCTCATTAGAGCTTACCTATT
* * *
22595409 CAGCTCATAAGACCTTA-CTATTT
1 TAGCTCATTAGAGCTTACCTA-TT
* * * *
22595432 TAGCTCATTGGAGGTAACCGATT
1 TAGCTCATTAGAGCTTACCTATT
*
22595455 CAGCTCGA-TAGAGCTTA-CTATT
1 TAGCTC-ATTAGAGCTTACCTATT
*
22595477 TAGCTCATTGGAGCTTACCGT-TT
1 TAGCTCATTAGAGCTTACC-TATT
22595500 TAGCT-ACTTAGAGCTTAC
1 TAGCTCA-TTAGAGCTTAC
22595518 TGTCCATCAA
Statistics
Matches: 82, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
21 1 0.01
22 20 0.24
23 57 0.70
24 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (23 bp):
TAGCTCATTAGAGCTTACCTATT
Found at i:22601670 original size:6 final size:6
Alignment explanation
Indices: 22601659--22601686 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
22601649 TAATCGAAAT
22601659 TAAAAA TAAAAA TAAAAA TAAAAA TAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAA
22601687 CTTTCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:22609343 original size:49 final size:49
Alignment explanation
Indices: 22609289--22609513 Score: 324
Period size: 49 Copynumber: 4.5 Consensus size: 49
22609279 CTGGTACGCA
* * *
22609289 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
22609338 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
22609387 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * *
22609437 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
22609488 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
22609514 TGCAACCTCA
Statistics
Matches: 159, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
49 79 0.50
50 43 0.27
51 36 0.23
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:22609460 original size:99 final size:100
Alignment explanation
Indices: 22609276--22609513 Score: 336
Period size: 99 Copynumber: 2.4 Consensus size: 100
22609266 TAGCCAAAGC
* * * * ** *
22609276 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
22609341 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * *
22609374 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
22609439 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* *
22609475 TTTCGGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
22609514 TGCAACCTCA
Statistics
Matches: 123, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
98 40 0.33
99 43 0.35
100 1 0.01
101 39 0.32
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:22613383 original size:4 final size:4
Alignment explanation
Indices: 22613374--22613411 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
22613364 TTGCATTTTC
22613374 TTTA TTTA -TTA -TTA TTTA TTTA TTTA TTTA TTTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTT
22613412 TAGATTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 6 0.19
4 22 0.69
5 4 0.12
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:22615103 original size:20 final size:20
Alignment explanation
Indices: 22615078--22615119 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22615068 AGTCCTTTTA
22615078 TTTTATTATCATTATTATTT
1 TTTTATTATCATTATTATTT
* * *
22615098 TTTTATTTTTATTTTTATTT
1 TTTTATTATCATTATTATTT
22615118 TT
1 TT
22615120 ATTTTTCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTATTATCATTATTATTT
Found at i:22615106 original size:6 final size:6
Alignment explanation
Indices: 22615097--22615134 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
22615087 CATTATTATT
*
22615097 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT- CTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
22615135 ATTTTTGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:22615109 original size:17 final size:17
Alignment explanation
Indices: 22615075--22615125 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
22615065 TTCAGTCCTT
* **
22615075 TTATTTTATTATCATTA
1 TTATTTTTTTATTTTTA
22615092 TTATTTTTTTATTTTTA
1 TTATTTTTTTATTTTTA
*
22615109 TTTTTATTTTTATTTTT
1 TTATT-TTTTTATTTTT
22615126 CTTTTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (17 bp):
TTATTTTTTTATTTTTA
Found at i:22615112 original size:11 final size:11
Alignment explanation
Indices: 22615089--22615140 Score: 56
Period size: 11 Copynumber: 4.7 Consensus size: 11
22615079 TTTATTATCA
22615089 TTATTATTT-TT
1 TTATT-TTTATT
22615100 TTATTTTTATTT
1 TTATTTTTA-TT
22615112 TTATTTTTATT
1 TTATTTTTATT
22615123 TT-TCTTTTA-T
1 TTAT-TTTTATT
22615133 TTATTTTT
1 TTATTTTT
22615141 GAAGACTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 11 0.30
11 15 0.41
12 11 0.30
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:22625807 original size:2 final size:2
Alignment explanation
Indices: 22625800--22625824 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22625790 GTCATTTAAC
22625800 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
22625825 CAATGACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22629139 original size:29 final size:29
Alignment explanation
Indices: 22629106--22629179 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
22629096 GTGACGAGAT
22629106 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
22629135 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
22629164 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
22629180 ATTTACTATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:22629189 original size:24 final size:24
Alignment explanation
Indices: 22629162--22629276 Score: 203
Period size: 24 Copynumber: 4.8 Consensus size: 24
22629152 GCTGGAAATA
22629162 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22629186 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
22629210 TATGGCACTATGTGTGCAATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
22629234 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
22629258 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
22629277 ACATAATAAG
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 87 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:22629290 original size:72 final size:72
Alignment explanation
Indices: 22629162--22629298 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
22629152 GCTGGAAATA
* ** * *
22629162 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
22629227 AATTTAC
66 AATTTAC
*
22629234 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATAGCACTATGTGTG
22629298 C
65 C
22629299 CACATTCGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 53 0.91
73 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
AATTTAC
Found at i:22633012 original size:24 final size:24
Alignment explanation
Indices: 22632985--22633036 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
22632975 AATGCACTGA
22632985 GTGTACG-GTGTGCTACG-GCACTAT
1 GTGTACGAGTGTG--ACGAGCACTAT
*
22633009 GTGTGCGAGTGTGACGAGCACTAT
1 GTGTACGAGTGTGACGAGCACTAT
22633033 GTGT
1 GTGT
22633037 GCAAATTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 3 0.12
24 17 0.68
25 5 0.20
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (24 bp):
GTGTACGAGTGTGACGAGCACTAT
Found at i:22635244 original size:24 final size:24
Alignment explanation
Indices: 22634905--22635242 Score: 606
Period size: 24 Copynumber: 14.1 Consensus size: 24
22634895 GCAAAGACCA
*
22634905 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
22634929 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22634953 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22634977 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22635001 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
22635025 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
22635049 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22635073 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
22635097 TATGGCACTATGTGTGCGA-TCAC
1 TATGGCACTATGTGTGCGATTTAC
22635120 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22635144 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22635168 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
22635192 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
22635216 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
22635240 TAT
1 TAT
22635243 AGTCACATTC
Statistics
Matches: 304, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
23 22 0.07
24 282 0.93
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:22641341 original size:24 final size:24
Alignment explanation
Indices: 22641168--22641339 Score: 301
Period size: 24 Copynumber: 7.2 Consensus size: 24
22641158 AAGGATTTAC
22641168 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
*
22641192 ACTATGGCACTATGTGTGCGATTC
1 ACTATGGCACTATGTGTGCGATTT
22641216 A-TATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
22641239 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
22641263 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
22641287 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
* *
22641311 GCTATAGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
*
22641335 GCTAT
1 ACTAT
22641340 AGTCACATTC
Statistics
Matches: 143, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
23 22 0.15
24 121 0.85
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
ACTATGGCACTATGTGTGCGATTT
Found at i:22649425 original size:24 final size:24
Alignment explanation
Indices: 22649085--22649423 Score: 606
Period size: 24 Copynumber: 14.1 Consensus size: 24
22649075 GCAAAGACCA
*
22649085 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
22649109 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22649133 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22649157 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22649181 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
22649205 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
22649229 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22649253 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
22649277 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
22649301 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22649325 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
22649349 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
22649373 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
22649397 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
22649421 TAT
1 TAT
22649424 AGTCACATTC
Statistics
Matches: 304, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 304 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:22652943 original size:23 final size:23
Alignment explanation
Indices: 22652913--22653036 Score: 124
Period size: 23 Copynumber: 5.4 Consensus size: 23
22652903 CATCTTATTG
* *
22652913 GAGCTTACTGATTTAGCTCGTAA
1 GAGCTTACTGATTCAGCTCGTTA
* * *
22652936 GAGCTTACTAATTCAGCTCATTG
1 GAGCTTACTGATTCAGCTCGTTA
* *
22652959 GAGCTTACCGATTCAGCTCGATA
1 GAGCTTACTGATTCAGCTCGTTA
* * *
22652982 GAACTTACTG-TTCAGCTCATTG
1 GAGCTTACTGATTCAGCTCGTTA
* * *
22653004 GAGCATACCGTTTCAGCTCGTTA
1 GAGCTTACTGATTCAGCTCGTTA
22653027 GAGCTTACTG
1 GAGCTTACTG
22653037 TCCATCAACT
Statistics
Matches: 78, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
22 16 0.21
23 62 0.79
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (23 bp):
GAGCTTACTGATTCAGCTCGTTA
Found at i:22653013 original size:45 final size:44
Alignment explanation
Indices: 22652909--22653037 Score: 168
Period size: 45 Copynumber: 2.8 Consensus size: 44
22652899 ACCACATCTT
* * *
22652909 ATTGGAGCTTACTGATTTAGCTCGTAAGAGCTTACTAATTCAGCTC
1 ATTGGAGCTTACCGATTCAGCTCGT-AGAGCTTACT-GTTCAGCTC
*
22652955 ATTGGAGCTTACCGATTCAGCTCGATAGAACTTACTGTTCAGCTC
1 ATTGGAGCTTACCGATTCAGCTCG-TAGAGCTTACTGTTCAGCTC
* *
22653000 ATTGGAGCATACCGTTTCAGCTCGTTAGAGCTTACTGT
1 ATTGGAGCTTACCGATTCAGCTCG-TAGAGCTTACTGT
22653038 CCATCAACTC
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
45 42 0.57
46 31 0.42
47 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (44 bp):
ATTGGAGCTTACCGATTCAGCTCGTAGAGCTTACTGTTCAGCTC
Found at i:22654984 original size:42 final size:43
Alignment explanation
Indices: 22654885--22654985 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 43
22654875 GCCAGCGTCT
* ** *
22654885 CAGACGTGGTCTTACATGTAATCAAATATTGATACCACTATCC
1 CAGACATGGTCTTACATAAAATCAAATATCGATACCACTATCC
* * *
22654928 CAAACAGGGTCTTACATAAAATCAAAT-TCGATACCGA-TGTCC
1 CAGACATGGTCTTACATAAAATCAAATATCGATACC-ACTATCC
*
22654970 CAGACATGGACTTACA
1 CAGACATGGTCTTACA
22654986 CGTAAACCTC
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
42 24 0.51
43 23 0.49
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
CAGACATGGTCTTACATAAAATCAAATATCGATACCACTATCC
Found at i:22656100 original size:31 final size:31
Alignment explanation
Indices: 22656062--22656156 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
22656052 CCTTTTCATA
*
22656062 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
22656093 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
22656124 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
22656155 TT
1 TT
22656157 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:22656399 original size:24 final size:24
Alignment explanation
Indices: 22656348--22656490 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
22656338 GCTTTATCAT
*
22656348 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
22656373 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
22656397 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
22656420 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
22656444 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
22656468 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
22656491 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:22656427 original size:47 final size:48
Alignment explanation
Indices: 22656348--22656489 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
22656338 GCTTTATCAT
* *
22656348 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
22656397 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
22656444 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
22656490 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:22656448 original size:71 final size:72
Alignment explanation
Indices: 22656347--22656490 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
22656337 TGCTTTATCA
*
22656347 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
22656412 GCCCTTT
66 GCCCTTT
* * **
22656419 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
22656482 AGCCCTTT
65 AGCCCTTT
22656490 T
1 T
22656491 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:22656569 original size:20 final size:20
Alignment explanation
Indices: 22656541--22656600 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
22656531 TATGATTACC
*
22656541 TCATCTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
22656561 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
22656581 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
22656601 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:22656675 original size:25 final size:25
Alignment explanation
Indices: 22656643--22656690 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22656633 ATACATAAAC
* * *
22656643 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
22656668 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
22656691 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:22660675 original size:23 final size:23
Alignment explanation
Indices: 22660649--22660759 Score: 100
Period size: 23 Copynumber: 4.9 Consensus size: 23
22660639 ATACTCACCA
*
22660649 CAGCTCATTGGAGCTTACCAATT
1 CAGCTCATTGGAGCTTACCGATT
** * * *
22660672 CAGCTCATAAGAACTTACTGTTT
1 CAGCTCATTGGAGCTTACCGATT
* *
22660695 TAGCTCATTGGAGCTAACCGATT
1 CAGCTCATTGGAGCTTACCGATT
* * *
22660718 CAGATCGA-TAGAGCTTACTG-TT
1 CAGCTC-ATTGGAGCTTACCGATT
22660740 CAGCTCATTGGAGCTTACCG
1 CAGCTCATTGGAGCTTACCG
22660760 TTTTAGCTAG
Statistics
Matches: 65, Mismatches: 21, Indels: 5
0.71 0.23 0.05
Matches are distributed among these distances:
21 1 0.02
22 17 0.26
23 46 0.71
24 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (23 bp):
CAGCTCATTGGAGCTTACCGATT
Found at i:22660719 original size:46 final size:45
Alignment explanation
Indices: 22660649--22660759 Score: 152
Period size: 46 Copynumber: 2.4 Consensus size: 45
22660639 ATACTCACCA
* *
22660649 CAGCTCATTGGAGCTTACCAATTCAGCTC-ATAAGAACTTACTGTTT
1 CAGCTCATTGGAGCTTACCGATTCAGATCGAT-AGAACTTACTG-TT
* * *
22660695 TAGCTCATTGGAGCTAACCGATTCAGATCGATAGAGCTTACTGTT
1 CAGCTCATTGGAGCTTACCGATTCAGATCGATAGAACTTACTGTT
22660740 CAGCTCATTGGAGCTTACCG
1 CAGCTCATTGGAGCTTACCG
22660760 TTTTAGCTAG
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
45 20 0.35
46 35 0.61
47 2 0.04
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (45 bp):
CAGCTCATTGGAGCTTACCGATTCAGATCGATAGAACTTACTGTT
Found at i:22675701 original size:40 final size:39
Alignment explanation
Indices: 22675656--22675785 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
22675646 CGGAATATAA
22675656 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
22675696 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
22675736 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
22675776 CCGGATATAA
1 CCGGATATAA
22675786 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22675800 original size:40 final size:40
Alignment explanation
Indices: 22675672--22675823 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
22675662 ATAACCATGT
* * *
22675672 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
22675712 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
22675752 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
22675792 GCATAATTGTCTTCGGGAT-TTAGCCCAGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
22675824 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 85 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:22680138 original size:16 final size:17
Alignment explanation
Indices: 22680113--22680144 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
22680103 ATTCAGTCCC
22680113 AAATTCATACTTTTGCA
1 AAATTCATACTTTTGCA
22680130 AAATT-ATACTTTTGC
1 AAATTCATACTTTTGC
22680145 CCTTAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (17 bp):
AAATTCATACTTTTGCA
Found at i:22681981 original size:27 final size:27
Alignment explanation
Indices: 22681946--22682001 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
22681936 AGATTAAAAA
22681946 GTAAGAATAAATCAAATTTGATTATGG
1 GTAAGAATAAATCAAATTTGATTATGG
22681973 GTAAGAATAAATCAAATTTGATTATGG
1 GTAAGAATAAATCAAATTTGATTATGG
22682000 GT
1 GT
22682002 GATTAGTTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAAGAATAAATCAAATTTGATTATGG
Found at i:22684799 original size:14 final size:14
Alignment explanation
Indices: 22684780--22684809 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22684770 ATTTAACCGA
22684780 ATATACATAAACTC
1 ATATACATAAACTC
*
22684794 ATATACATAAATTC
1 ATATACATAAACTC
22684808 AT
1 AT
22684810 GCATCATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATACATAAACTC
Found at i:22685285 original size:45 final size:44
Alignment explanation
Indices: 22685135--22685291 Score: 153
Period size: 45 Copynumber: 3.6 Consensus size: 44
22685125 ATATCGTACA
* * *
22685135 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
* * * *
22685178 ATGCC-ACTATCTCATACAGGGTCTTACACG-AATCA-AATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACAATATCG
* * * *
22685219 ATGACGATGTCCCAGACATGGTCTTACACGTAATCACATATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACA-ATATCG
*
22685264 ATGCCAACGTCCCAGATATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
22685292 TGAGAACACA
Statistics
Matches: 89, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
41 24 0.27
42 16 0.18
43 21 0.24
44 3 0.03
45 25 0.28
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
Found at i:22692602 original size:40 final size:40
Alignment explanation
Indices: 22692532--22692669 Score: 226
Period size: 40 Copynumber: 3.5 Consensus size: 40
22692522 AAACCAAGTA
* * *
22692532 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
22692571 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22692611 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22692651 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22692670 TTATCATCCG
Statistics
Matches: 94, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
39 14 0.15
40 80 0.85
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22704254 original size:124 final size:122
Alignment explanation
Indices: 22704034--22704255 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
22704024 GAATTATGTG
* * * *
22704034 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
22704099 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
22704156 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
22704220 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
22704256 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:22704299 original size:40 final size:40
Alignment explanation
Indices: 22704214--22704364 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
22704204 AATTGAATGA
* * * *
22704214 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
22704254 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
22704295 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
22704334 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
22704365 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:22704378 original size:40 final size:40
Alignment explanation
Indices: 22704251--22704380 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
22704241 ATGCTGGAAA
* * *
22704251 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
22704291 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
22704331 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
22704371 TTATATCCGG
1 TTATATCCGG
22704381 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:22704379 original size:80 final size:80
Alignment explanation
Indices: 22704213--22704380 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
22704203 AAATTGAATG
* *
22704213 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
22704278 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
22704293 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
22704356 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
22704373 ATATCCGG
1 ATATCCGG
22704381 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:22716422 original size:31 final size:28
Alignment explanation
Indices: 22716380--22716469 Score: 76
Period size: 31 Copynumber: 3.1 Consensus size: 28
22716370 ATGTGCACAT
22716380 AATGT-AT-ATATACATATAATAAAATA
1 AATGTAATAATATACATATAATAAAATA
* *
22716406 CATGTATTGATAATATATATATAAGAATAAAATA
1 AATGTA---ATAATATACATAT---AATAAAATA
* *
22716440 AATGTAATAATATACATATAAGAATATA
1 AATGTAATAATATACATATAATAAAATA
22716468 AA
1 AA
22716470 ATCTAGTTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
26 4 0.08
28 9 0.18
30 2 0.04
31 21 0.42
34 14 0.28
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (28 bp):
AATGTAATAATATACATATAATAAAATA
Found at i:22716445 original size:34 final size:31
Alignment explanation
Indices: 22716397--22716465 Score: 93
Period size: 31 Copynumber: 2.1 Consensus size: 31
22716387 ATATACATAT
* *
22716397 AATAAAATACATGTATTGATAATATATATATAAG
1 AATAAAATAAATGTA---ATAATATACATATAAG
22716431 AATAAAATAAATGTAATAATATACATATAAG
1 AATAAAATAAATGTAATAATATACATATAAG
22716462 AATA
1 AATA
22716466 TAAAATCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 19 0.58
34 14 0.42
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (31 bp):
AATAAAATAAATGTAATAATATACATATAAG
Found at i:22717956 original size:21 final size:22
Alignment explanation
Indices: 22717922--22717962 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
22717912 TTTGTTTATA
22717922 TTTTATATACTTTAAATATTGT
1 TTTTATATACTTTAAATATTGT
* *
22717944 TTTTATTTA-TTTAGATATT
1 TTTTATATACTTTAAATATT
22717963 TAGATATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (22 bp):
TTTTATATACTTTAAATATTGT
Found at i:22721510 original size:31 final size:29
Alignment explanation
Indices: 22721474--22721548 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
22721464 CGGTTCAAGA
*
22721474 ACTAAAATGTTACAACATATT-AACGTAAGTG
1 ACTAAAATGTT--AACAT-TTAAACATAAGTG
22721505 ACTAAAATG-TAACATTTCAAACATAAGTG
1 ACTAAAATGTTAACATTT-AAACATAAGTG
22721534 ACTAAAATG-TAACAT
1 ACTAAAATGTTAACAT
22721549 GAGGTAAACA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
27 2 0.05
28 5 0.12
29 24 0.59
30 1 0.02
31 9 0.22
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (29 bp):
ACTAAAATGTTAACATTTAAACATAAGTG
Found at i:22721564 original size:31 final size:29
Alignment explanation
Indices: 22721500--22721568 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
22721490 ATATTAACGT
* *
22721500 AAGTGACTAAAATGTAACATTTCAAACAT
1 AAGTGACTAAAATGTAACATGTCAAACAA
22721529 AAGTGACTAAAATGTAACATGAGGT-AAACAA
1 AAGTGACTAAAATGTAACAT---GTCAAACAA
22721560 AAGTGACTA
1 AAGTGACTA
22721569 TTTTAATAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 20 0.57
31 14 0.40
32 1 0.03
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.23
Consensus pattern (29 bp):
AAGTGACTAAAATGTAACATGTCAAACAA
Found at i:22729369 original size:25 final size:25
Alignment explanation
Indices: 22729333--22729385 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
22729323 AGGCAAAACT
*
22729333 ATTATATTGTTTATGTTGTTAAATA
1 ATTATATCGTTTATGTTGTTAAATA
22729358 ATTATATCGTTTATGTTGTTAAATA
1 ATTATATCGTTTATGTTGTTAAATA
22729383 ATT
1 ATT
22729386 TTATACTTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.55
Consensus pattern (25 bp):
ATTATATCGTTTATGTTGTTAAATA
Found at i:22731569 original size:14 final size:14
Alignment explanation
Indices: 22731550--22731578 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22731540 AACCCCTAGA
22731550 ATTTTATTTTTATC
1 ATTTTATTTTTATC
22731564 ATTTTATTTTTATC
1 ATTTTATTTTTATC
22731578 A
1 A
22731579 ATAATGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTTATTTTTATC
Found at i:22738689 original size:2 final size:2
Alignment explanation
Indices: 22738684--22738727 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
22738674 AAATACAAGC
22738684 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22738726 TA
1 TA
22738728 AAAGACTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22747792 original size:21 final size:21
Alignment explanation
Indices: 22747746--22747794 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
22747736 AATTTTTTCT
*
22747746 TAATTTTAAAAATTAATTTTA
1 TAATTTTAAAAATTAATATTA
22747767 TAATTTTAGAAAA-TAA-ATTA
1 TAATTTTA-AAAATTAATATTA
22747787 TGAATTTT
1 T-AATTTT
22747795 CAGATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 17 0.68
22 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (21 bp):
TAATTTTAAAAATTAATATTA
Found at i:22749744 original size:199 final size:200
Alignment explanation
Indices: 22749403--22749789 Score: 659
Period size: 199 Copynumber: 1.9 Consensus size: 200
22749393 GAATAGTCTC
* *
22749403 TTACATTTATTCATATAATTAACATGAAATCTGATAAGTAACTATAACAACCTTGCATGAGTATG
1 TTACATTTATTCAAATAATTAACATGAAATCTGATAAGTAACTATAACAACCTTACATGAGTATG
* *
22749468 ATCTGAATTGTTATTTTTGTATACACATATTTGACATATGTTAAATCTGCATCTACATTGGGTTG
66 ATCTGAATTGTTATTTATGTATACACATATCTGACATATGTTAAATCTGCATCTACATTGGGTTG
*
22749533 GGATTGTGAAAAAGACAAAGCGTGGGCAATTTAATAATCTACTGAACTTAGTGGCTAAGCCACAA
131 GGATTGTGAAAAAGACAAAGCGTGGGCAATTTAATAATCTACAGAACTTAGTGGCTAAGCCACAA
22749598 ATCTG
196 ATCTG
* * *
22749603 TTACATTTATTTAAATAGTTAACATGAAATCTGATAAGTAACTATGACAACCTTACATGAGTAT-
1 TTACATTTATTCAAATAATTAACATGAAATCTGATAAGTAACTATAACAACCTTACATGAGTATG
*
22749667 ATCTGAATTGTTATTTATGTATACGCATATCTGACATATGTTAAATCTGCATCTACATTGGGTTG
66 ATCTGAATTGTTATTTATGTATACACATATCTGACATATGTTAAATCTGCATCTACATTGGGTTG
* **
22749732 GGATTGTGAAAAATAGGAAGCGTGGGCAATTTAATAATCTACAGAACTTAGTGGCTAA
131 GGATTGTGAAAAAGACAAAGCGTGGGCAATTTAATAATCTACAGAACTTAGTGGCTAA
22749790 ACTACAAACT
Statistics
Matches: 175, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
199 116 0.66
200 59 0.34
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (200 bp):
TTACATTTATTCAAATAATTAACATGAAATCTGATAAGTAACTATAACAACCTTACATGAGTATG
ATCTGAATTGTTATTTATGTATACACATATCTGACATATGTTAAATCTGCATCTACATTGGGTTG
GGATTGTGAAAAAGACAAAGCGTGGGCAATTTAATAATCTACAGAACTTAGTGGCTAAGCCACAA
ATCTG
Found at i:22750668 original size:18 final size:20
Alignment explanation
Indices: 22750645--22750687 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
22750635 AACATTTAGC
*
22750645 AAAATTAT-AA-AAAATCTA
1 AAAATTATAAAGAAAATATA
*
22750663 AAAATTTTAAAGAAAATATA
1 AAAATTATAAAGAAAATATA
22750683 AAAAT
1 AAAAT
22750688 AAAATTCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 2 0.10
20 12 0.57
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAATTATAAAGAAAATATA
Found at i:22750710 original size:25 final size:25
Alignment explanation
Indices: 22750663--22750711 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
22750653 AAAAAATCTA
*
22750663 AAAATTTTAAAGAAAATATAAAAAT
1 AAAATTTTAAAGAAAATACAAAAAT
*
22750688 AAAATTCTTAAA-AAATTACAAAAA
1 AAAATT-TTAAAGAAAATACAAAAA
22750712 GATCTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (25 bp):
AAAATTTTAAAGAAAATACAAAAAT
Found at i:22751084 original size:89 final size:89
Alignment explanation
Indices: 22750991--22751155 Score: 188
Period size: 89 Copynumber: 1.9 Consensus size: 89
22750981 ATGATGTATA
* ** * *
22750991 AAAAAAACCCTTAAACTTTTTAAAAAAAAGTAATTAAGACCTTGCTTTTTTTAT-CACTCAATTG
1 AAAAAAACCCTCAAACTTTTT-AAAAAAACCAATTAAGACCCTACTTTTTTTATGCACTCAATTG
22751055 GGTACATGAACTTTCAAAATACATC
65 GGTACATGAACTTTCAAAATACATC
**** * * * *
22751080 AAAAAGGTTCTCAAACTTTTTCAAAAAACCAATTAAGCCCCTATTTTTTTTTTGCACTCAATTGG
1 AAAAAAACCCTCAAACTTTTTAAAAAAACCAATTAAGACCCTACTTTTTTTATGCACTCAATTGG
*
22751145 GTACTTGAACT
66 GTACATGAACT
22751156 ACCTCTAATT
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
88 24 0.39
89 37 0.61
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (89 bp):
AAAAAAACCCTCAAACTTTTTAAAAAAACCAATTAAGACCCTACTTTTTTTATGCACTCAATTGG
GTACATGAACTTTCAAAATACATC
Done.