Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 85 of 328
Found at i:23653095 original size:27 final size:27
Alignment explanation
Indices: 23653054--23653166 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
23653044 GAGGAAGCGT
*
23653054 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
23653081 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
23653108 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
23653136 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
23653162 TCTGG
1 TCTGG
23653167 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:23653159 original size:54 final size:54
Alignment explanation
Indices: 23653052--23653166 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
23653042 TGGAGGAAGC
*
23653052 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
23653106 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
23653160 GTTCTGG
1 GTTCTGG
23653167 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:23659426 original size:26 final size:26
Alignment explanation
Indices: 23659390--23659525 Score: 229
Period size: 26 Copynumber: 5.2 Consensus size: 26
23659380 TGATACAAAT
*
23659390 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATGGGTTAGGTAAATGTTTC-A
* *
23659416 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23659442 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23659468 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23659494 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
23659520 TGATAA
1 TGATAA
23659526 GAATTTCATG
Statistics
Matches: 106, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
26 104 0.98
27 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:23662511 original size:49 final size:49
Alignment explanation
Indices: 23662451--23662706 Score: 367
Period size: 49 Copynumber: 5.3 Consensus size: 49
23662441 GTATGAGATA
23662451 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
23662500 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
23662549 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
23662598 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG-G-G
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
23662645 TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
23662692 TATAAATGTGATAAG
1 TATATATGTGATAAG
23662707 TCCCGAAGGG
Statistics
Matches: 191, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.01
47 52 0.27
48 1 0.01
49 137 0.72
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:23665365 original size:27 final size:27
Alignment explanation
Indices: 23665324--23665463 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
23665314 GAGGAAGCGT
*
23665324 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
23665351 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
23665378 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
23665405 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
23665433 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
23665459 TCTGG
1 TCTGG
23665464 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:23665409 original size:54 final size:55
Alignment explanation
Indices: 23665324--23665463 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 55
23665314 GAGGAAGCGT
* * *
23665324 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
23665378 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
23665433 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
23665464 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 60 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:23669930 original size:477 final size:477
Alignment explanation
Indices: 23669036--23670292 Score: 2426
Period size: 477 Copynumber: 2.6 Consensus size: 477
23669026 TTATACAAAT
23669036 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
* *
23669101 AATAATATCAAAACAGAATCGTAGTTTAATTTTTATAAGGAAATTGGAAATAAATTAAGGTTATA
66 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
23669166 TAAATATTCAATAGCGATATAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGT
131 TAAATATTCAATAGCGATATAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGT
23669231 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
196 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
23669296 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
261 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
23669361 TATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAA
326 TATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAA
23669426 CCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTGTTTTGATAA
391 CCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTGTTTTGATAA
23669491 AAATTAGTTATAACTTTTAAAG
456 AAATTAGTTATAACTTTTAAAG
23669513 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
*
23669578 AATAATATCAAAAAAAAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
66 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
23669643 TAAATATTCAATAGCGATATAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGT
131 TAAATATTCAATAGCGATATAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGT
* *
23669708 GGCGTTGTTACACCTAGGGAGGATCTATTATATCTTGCAGATCGATATAAGGCAACCCGTCAGGT
196 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
23669773 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
261 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
23669838 TATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAA
326 TATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAA
23669903 CCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTGTTTTGATAA
391 CCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTGTTTTGATAA
23669968 AAATTAGTTATAACTTTTAAAG
456 AAATTAGTTATAACTTTTAAAG
*
23669990 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATATTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
23670055 AATAATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
66 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
*
23670119 TAAATATTCAATAACGATATAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGT
131 TAAATATTCAATAGCGATATAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGT
* *
23670184 GGCGTTATTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTTAGGT
196 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
23670249 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
261 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
23670293 TTGGAGAGAA
Statistics
Matches: 768, Mismatches: 12, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
476 224 0.29
477 544 0.71
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (477 bp):
ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
TAAATATTCAATAGCGATATAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGT
GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
TATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAA
CCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTGTTTTGATAA
AAATTAGTTATAACTTTTAAAG
Found at i:23673833 original size:10 final size:11
Alignment explanation
Indices: 23673816--23673862 Score: 58
Period size: 12 Copynumber: 4.0 Consensus size: 11
23673806 CCACTTTTCA
23673816 TATATATATATT
1 TATATATAT-TT
23673828 TATATATATTT
1 TATATATATTT
*
23673839 TAAAATAATATTT
1 T-ATAT-ATATTT
23673852 TATATATATTT
1 TATATATATTT
23673863 ATCTTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 9 0.29
12 15 0.48
13 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TATATATATTT
Found at i:23673871 original size:15 final size:15
Alignment explanation
Indices: 23673851--23673882 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23673841 AAATAATATT
*
23673851 TTATATATATTTATC
1 TTATATACATTTATC
23673866 TTATATACATTTATC
1 TTATATACATTTATC
23673881 TT
1 TT
23673883 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:23674714 original size:26 final size:25
Alignment explanation
Indices: 23674685--23674734 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
23674675 GAATTCATCA
23674685 TAAACCTTCAAATAC-TAGTTAACTCC
1 TAAACCTT-AAA-ACATAGTTAACTCC
*
23674711 TAAACCTTAAACCATAGTTAACTC
1 TAAACCTTAAAACATAGTTAACTC
23674735 ATAATTAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.59
26 8 0.36
ACGTcount: A:0.40, C:0.26, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAACCTTAAAACATAGTTAACTCC
Found at i:23675002 original size:41 final size:41
Alignment explanation
Indices: 23674945--23675165 Score: 343
Period size: 41 Copynumber: 5.4 Consensus size: 41
23674935 GGTTATGGGA
*
23674945 TTTTTAGCGGCGTTTTACCGAAAGCGCCTCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
* * *
23674986 TTTTTAGCGGCGTTTTACCAAAAGTGGCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
*
23675027 TTTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
* * * *
23675068 TTTTTAGCGACGTTTAACCAAAAGCGCCACTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
*
23675109 TTTTTCGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
*
23675150 TTTTTACCGGCGTTTT
1 TTTTTAGCGGCGTTTT
23675166 TTACTAAAAC
Statistics
Matches: 160, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 160 1.00
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
Found at i:23675208 original size:42 final size:39
Alignment explanation
Indices: 23675013--23675230 Score: 116
Period size: 41 Copynumber: 5.3 Consensus size: 39
23675003 CCAAAAGTGG
* * **
23675013 CGCTAATGCTCTGGTTTTTAGCGGCG-TTTTACAGAAAGCGC
1 CGCTATTGCTCT-GTTTTTACCGGCGTTTTTTTA-AAA-CGC
* * * ****
23675054 CGCTAATGCTCTGGTTTTTAGCGACGTTTAACCAAAAGCGC
1 CGCTATTGCTCT-GTTTTTACCGGCGTTTTTTTAAAA-CGC
* * *** *
23675095 CACTAATGCTCTGGTTTTT-CGCGGCGTTTTACCGAAAGCGC
1 CGCTATTGCTCT-GTTTTTAC-CGGCGTTTT-TTTAAAACGC
*
23675136 CGCTAATGCTCTGGTTTTTACCGGCGTTTTTTACTAAAACGC
1 CGCTATTGCTCT-GTTTTTACCGGCGTTTTTT--TAAAACGC
* * * *
23675178 TGCTGTTGCTCTGTTTTTACCGGCATTTTTTTTAGAACGC
1 CGCTATTGCTCTGTTTTTACCGGC-GTTTTTTTAAAACGC
23675218 CGCTATTGCTCTG
1 CGCTATTGCTCTG
23675231 AATTTTAAAA
Statistics
Matches: 147, Mismatches: 23, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
40 18 0.12
41 99 0.67
42 30 0.20
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (39 bp):
CGCTATTGCTCTGTTTTTACCGGCGTTTTTTTAAAACGC
Found at i:23675227 original size:40 final size:41
Alignment explanation
Indices: 23675133--23675230 Score: 126
Period size: 40 Copynumber: 2.4 Consensus size: 41
23675123 TTACCGAAAG
* *
23675133 CGCCGCTAATGCTCTGGTTTTTACCGGCGTTTTTTACTAAAA
1 CGCCGCTATTGCTCT-GTTTTTACCGGCATTTTTTACTAAAA
* * * *
23675175 CGCTGCTGTTGCTCTGTTTTTACCGGCATTTTTT-TTAGAA
1 CGCCGCTATTGCTCTGTTTTTACCGGCATTTTTTACTAAAA
23675215 CGCCGCTATTGCTCTG
1 CGCCGCTATTGCTCTG
23675231 AATTTTAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 18 0.38
41 18 0.38
42 12 0.25
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.41
Consensus pattern (41 bp):
CGCCGCTATTGCTCTGTTTTTACCGGCATTTTTTACTAAAA
Found at i:23681933 original size:174 final size:174
Alignment explanation
Indices: 23681643--23681988 Score: 665
Period size: 174 Copynumber: 2.0 Consensus size: 174
23681633 GCCTATAGCA
23681643 TTACTACTGCAGGTAATAATCTATTTTATGCTTACATTACATATGTTTCATAAATATATGAAGAG
1 TTACTACTGCAGGTAATAATCTATTTTATGCTTACATTACATATGTTTCATAAATATATGAAGAG
*
23681708 GTAAAAGGAAGTTGATATGATATGAATGTATCGGGCAGTAATCCCTATTTGAGTGGCTTAGTAAG
66 GTAAAAGGAAGTTGATATGATATGAATGCATCGGGCAGTAATCCCTATTTGAGTGGCTTAGTAAG
23681773 CATCTTTCCTCATGGTCTTTGTTTCAGCATATGAGTAAACTGCC
131 CATCTTTCCTCATGGTCTTTGTTTCAGCATATGAGTAAACTGCC
* *
23681817 TTACTACTGCAGGTAATAATGTATTTTATGCTTACATTACGTATGTTTCATAAATATATGAAGAG
1 TTACTACTGCAGGTAATAATCTATTTTATGCTTACATTACATATGTTTCATAAATATATGAAGAG
23681882 GTAAAAGGAAGTTGATATGATATGAATGCATCGGGCAGTAATCCCTATTTGAGTGGCTTAGTAAG
66 GTAAAAGGAAGTTGATATGATATGAATGCATCGGGCAGTAATCCCTATTTGAGTGGCTTAGTAAG
23681947 CATCTTTCCTCATGGTCTTTGTTTCAGCATATGAGTAAACTG
131 CATCTTTCCTCATGGTCTTTGTTTCAGCATATGAGTAAACTG
23681989 TCTTTCTATC
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 169 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (174 bp):
TTACTACTGCAGGTAATAATCTATTTTATGCTTACATTACATATGTTTCATAAATATATGAAGAG
GTAAAAGGAAGTTGATATGATATGAATGCATCGGGCAGTAATCCCTATTTGAGTGGCTTAGTAAG
CATCTTTCCTCATGGTCTTTGTTTCAGCATATGAGTAAACTGCC
Found at i:23683342 original size:32 final size:32
Alignment explanation
Indices: 23683306--23683372 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
23683296 ACTTGCCACC
23683306 ATTAACACAATTAGAGCTTCTCTAATTTCGTA
1 ATTAACACAATTAGAGCTTCTCTAATTTCGTA
23683338 ATTAACACAATTAGAGCTTCTCTAATTTCGTA
1 ATTAACACAATTAGAGCTTCTCTAATTTCGTA
23683370 ATT
1 ATT
23683373 TTGTACTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (32 bp):
ATTAACACAATTAGAGCTTCTCTAATTTCGTA
Found at i:23683728 original size:21 final size:22
Alignment explanation
Indices: 23683704--23683744 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
23683694 TTGGTTTAAG
*
23683704 TAGTTAAAG-TATGTATTTAGT
1 TAGTTAAAGCTATCTATTTAGT
*
23683725 TAGTTCAAGCTATCTATTTA
1 TAGTTAAAGCTATCTATTTA
23683745 CTGATATTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.46
Consensus pattern (22 bp):
TAGTTAAAGCTATCTATTTAGT
Found at i:23686467 original size:26 final size:25
Alignment explanation
Indices: 23686438--23686486 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
23686428 ATATATCAAT
*
23686438 TTTAAAAAATTATAAAATATAAAAAA
1 TTTAAAAAAGTATAAAA-ATAAAAAA
*
23686464 TTTAGAAAAGTATAAAAATAAAA
1 TTTAAAAAAGTATAAAAATAAAA
23686487 TTATAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (25 bp):
TTTAAAAAAGTATAAAAATAAAAAA
Found at i:23686472 original size:18 final size:18
Alignment explanation
Indices: 23686440--23686481 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
23686430 ATATCAATTT
*
23686440 TAAAAAATTATAAAA-TA
1 TAAAAAATTAGAAAAGTA
23686457 TAAAAAATTTAGAAAAGTA
1 TAAAAAA-TTAGAAAAGTA
23686476 TAAAAA
1 TAAAAA
23686482 TAAAATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.32
18 7 0.32
19 8 0.36
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (18 bp):
TAAAAAATTAGAAAAGTA
Found at i:23686482 original size:18 final size:17
Alignment explanation
Indices: 23686440--23686482 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
23686430 ATATCAATTT
* *
23686440 TAAAAAATTATAAAATA
1 TAAAAATTTAGAAAATA
23686457 TAAAAAATTTAGAAAAGTA
1 T-AAAAATTTAGAAAA-TA
23686476 TAAAAAT
1 TAAAAAT
23686483 AAAATTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 18 0.82
19 3 0.14
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (17 bp):
TAAAAATTTAGAAAATA
Found at i:23686491 original size:14 final size:15
Alignment explanation
Indices: 23686469--23686501 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
23686459 AAAAATTTAG
23686469 AAAAGTAT-AAAAAT
1 AAAAGTATAAAAAAT
*
23686483 AAAATTATAAAAAAT
1 AAAAGTATAAAAAAT
23686498 AAAA
1 AAAA
23686502 AATCATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
AAAAGTATAAAAAAT
Found at i:23686502 original size:22 final size:23
Alignment explanation
Indices: 23686438--23686504 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 23
23686428 ATATATCAAT
23686438 TTTA-AAAAATTATAAAATATAAAAAA
1 TTTAGAAAAA-TATAAAA-AT--AAAA
*
23686464 TTTAGAAAAGTATAAAAATAAAA
1 TTTAGAAAAATATAAAAATAAAA
23686487 TTATA-AAAAATA-AAAAAT
1 TT-TAGAAAAATATAAAAAT
23686505 CATTAATTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 6 0.16
23 12 0.32
24 2 0.05
25 2 0.05
26 11 0.30
27 4 0.11
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (23 bp):
TTTAGAAAAATATAAAAATAAAA
Found at i:23692700 original size:46 final size:46
Alignment explanation
Indices: 23692650--23692825 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
23692640 TGGTTGAGCA
23692650 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23692696 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
23692741 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
23692789 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23692826 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23692806 original size:93 final size:93
Alignment explanation
Indices: 23692647--23692817 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
23692637 GGATGGTTGA
* *
23692647 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23692712 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
23692740 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23692805 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23692818 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23696939 original size:19 final size:19
Alignment explanation
Indices: 23696911--23696947 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23696901 CTGGTGCACA
23696911 AAGCGAATGCTAGCACACG
1 AAGCGAATGCTAGCACACG
* *
23696930 AAGCGCATGCTGGCACAC
1 AAGCGAATGCTAGCACAC
23696948 AAGGTGCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.30, G:0.27, T:0.11
Consensus pattern (19 bp):
AAGCGAATGCTAGCACACG
Found at i:23697292 original size:18 final size:18
Alignment explanation
Indices: 23697269--23697305 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
23697259 TTATATTTAT
23697269 CTAATTAACACATATAGG
1 CTAATTAACACATATAGG
23697287 CTAATTAACACATATAGG
1 CTAATTAACACATATAGG
23697305 C
1 C
23697306 AAGCACTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.27
Consensus pattern (18 bp):
CTAATTAACACATATAGG
Found at i:23700315 original size:43 final size:43
Alignment explanation
Indices: 23700247--23700405 Score: 175
Period size: 43 Copynumber: 3.7 Consensus size: 43
23700237 AACTCGTACA
*
23700247 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
**
23700290 ATGCC-ACTGTCCCAGACA-GGATCTTACATAAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGG-TCTTACATGTAATCAAATATCG
* * * *
23700332 ATGCCGATGTCCTAGATATGGTCTTACATGTAAAT-ATCAA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA--AATATCG
23700376 ATGCCAACGTCCCAGACATGGTCTTACATG
1 ATGCCAACGTCCCAGACATGGTCTTACATG
23700406 AAATTACATA
Statistics
Matches: 96, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
42 28 0.29
43 38 0.40
44 30 0.31
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
Found at i:23700357 original size:42 final size:41
Alignment explanation
Indices: 23700255--23700409 Score: 161
Period size: 44 Copynumber: 3.6 Consensus size: 41
23700245 CAATGCCAAC
* **
23700255 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATAAAATCAAATA-CGATGCCA-T
23700298 GTCCCAGACA-GGATCTTACATAAAATCAAATACGATGCCGAT
1 GTCCCAGACATGG-TCTTACATAAAATCAAATACGATGCC-AT
* * *
23700340 GTCCTAGATATGGTCTTACATGTAAATATCAAAT-CGATGCCAAC
1 GTCCCAGACATGGTCTTACA--TAAA-ATCAAATACGATGCC-AT
*
23700384 GTCCCAGACATGGTCTTACATGAAAT
1 GTCCCAGACATGGTCTTACATAAAAT
23700410 TACATATTGG
Statistics
Matches: 96, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 29 0.30
44 30 0.31
45 7 0.07
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACATAAAATCAAATACGATGCCAT
Found at i:23702361 original size:22 final size:21
Alignment explanation
Indices: 23702335--23702386 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 21
23702325 TTAGTTTTTC
23702335 CTATAAAAATTCAGATAATTT
1 CTATAAAAATTCAGATAATTT
23702356 ACTATAAAAATTCAGATAATTT
1 -CTATAAAAATTCAGATAATTT
23702378 CTAGTAAAA
1 CTA-TAAAA
23702387 TCTCATGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.35
Consensus pattern (21 bp):
CTATAAAAATTCAGATAATTT
Found at i:23702448 original size:17 final size:18
Alignment explanation
Indices: 23702428--23702461 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23702418 AAAATTAATT
*
23702428 AAAATTAAAAA-ATAAAG
1 AAAATAAAAAAGATAAAG
23702445 AAAATAAAAAAGATAAA
1 AAAATAAAAAAGATAAA
23702462 ATAATTTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (18 bp):
AAAATAAAAAAGATAAAG
Found at i:23710117 original size:29 final size:30
Alignment explanation
Indices: 23710052--23710123 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
23710042 AAACCGAACA
* *
23710052 TAATTCTAT-TTTTTTAATTCATATATAAT
1 TAATTTTATATTTTTTAATTCATATAAAAT
23710081 TAATTTTA-ATTTTTT-ATT-ATATAAAAT
1 TAATTTTATATTTTTTAATTCATATAAAAT
23710108 TAAATATTTATATTTT
1 T-AAT-TTTATATTTT
23710124 AAAAAGTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
27 9 0.24
28 6 0.16
29 17 0.46
30 5 0.14
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (30 bp):
TAATTTTATATTTTTTAATTCATATAAAAT
Found at i:23711201 original size:62 final size:62
Alignment explanation
Indices: 23711125--23711247 Score: 192
Period size: 62 Copynumber: 2.0 Consensus size: 62
23711115 TGTTATTTGT
* *
23711125 ATGAGTAATTAGGTTCAAGTGGTAAATCCATAAAGTCAAGTGGTTTTAGAAAATGAGGTATA
1 ATGAGTAATTAGGTTCAAGTGGTAAATCCATAAAGTCAAGCGATTTTAGAAAATGAGGTATA
* ** *
23711187 ATGAGTAATTAGGTTTAAGTGGTAAATCTTTAAAGTTAAGCGATTTTAGAAAATGAGGTAT
1 ATGAGTAATTAGGTTCAAGTGGTAAATCCATAAAGTCAAGCGATTTTAGAAAATGAGGTAT
23711248 CGAGACCTCG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (62 bp):
ATGAGTAATTAGGTTCAAGTGGTAAATCCATAAAGTCAAGCGATTTTAGAAAATGAGGTATA
Found at i:23713830 original size:41 final size:42
Alignment explanation
Indices: 23713768--23713846 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 42
23713758 TACCTAGTAC
*
23713768 CTCATCGGATTTAATCCGAAGCAATCA-TACAACACATAGTGT
1 CTCATCGGAATTAATCCGAAGCAAT-ATTACAACACATAGTGT
*
23713810 CTCATCGGAATT-ATCCGAAGCAATATTACGACACATA
1 CTCATCGGAATTAATCCGAAGCAATATTACAACACATA
23713847 TAGTGCCTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
40 1 0.03
41 22 0.65
42 11 0.32
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (42 bp):
CTCATCGGAATTAATCCGAAGCAATATTACAACACATAGTGT
Found at i:23722186 original size:33 final size:33
Alignment explanation
Indices: 23722148--23722216 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
23722138 AGGTGAAAAG
23722148 TTAGAACTTAATTATAAATCATTTGAACTTTAA
1 TTAGAACTTAATTATAAATCATTTGAACTTTAA
23722181 TTAGAACTTAATTATAAATCATTTGAACTTTAA
1 TTAGAACTTAATTATAAATCATTTGAACTTTAA
23722214 TTA
1 TTA
23722217 CATATGTCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.43
Consensus pattern (33 bp):
TTAGAACTTAATTATAAATCATTTGAACTTTAA
Found at i:23727274 original size:2 final size:2
Alignment explanation
Indices: 23727267--23727292 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
23727257 CCAGACCAGA
23727267 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
23727293 GTCAGAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23729143 original size:28 final size:28
Alignment explanation
Indices: 23729111--23729165 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
23729101 GCAGAGTTTC
23729111 CCTCTTCATTGTTTTACAATATTTTATG
1 CCTCTTCATTGTTTTACAATATTTTATG
23729139 CCTCTTCATTGTTTTACAATATTTTAT
1 CCTCTTCATTGTTTTACAATATTTTAT
23729166 ATATTTGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.18, G:0.05, T:0.55
Consensus pattern (28 bp):
CCTCTTCATTGTTTTACAATATTTTATG
Found at i:23731712 original size:29 final size:29
Alignment explanation
Indices: 23731675--23731730 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
23731665 AAGCTTCTTC
23731675 AAAGAATGAAATATTCACAAAAAGGTGTA
1 AAAGAATGAAATATTCACAAAAAGGTGTA
* *
23731704 AAAGCATGAAATATTCATAAAAAGGTG
1 AAAGAATGAAATATTCACAAAAAGGTG
23731731 CAGTAGTGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.54, C:0.07, G:0.18, T:0.21
Consensus pattern (29 bp):
AAAGAATGAAATATTCACAAAAAGGTGTA
Found at i:23748608 original size:44 final size:44
Alignment explanation
Indices: 23748511--23748998 Score: 181
Period size: 44 Copynumber: 10.6 Consensus size: 44
23748501 GTTATTATTG
*
23748511 CAAATCTTATCGCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
1 CAAATCTTATCCCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * * *
23748555 TAAACCTTATCCCTCTGAAGTTGCAGTAGAGCAGGTTGAAA-TTA
1 CAAATCTTATCCCTCTGAAGTTGCAGTAGAGCAGATT-AAAGCTA
* * * * * *
23748599 CGAGTCTTATCTCC-CTGAAGTTGCAGTGGAGCAGACTGAAGATA
1 CAAATCTTATC-CCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
** * * * * *
23748643 GTGAATCTTATTTCCT-TGAAGTTGCAGTGGAACAAAATAAAGCTACAAATTA
1 -CAAATCTTA-TCCCTCTGAAGTTGCAGTAGAGCAGATTAAAG---C----TA
* **
23748695 CAAATCTTATCTCC-CTGAAGTTGCAGTGGAATAGATCAAGCTACAAG-TCA
1 CAAATCTTATC-CCTCTGAAGTTGCAGTAGAGCAGAT-----TA-AAGCT-A
* * * * * *
23748745 TAAATCTTATACCTTTGAAGTTACAGTAG-G-ATGGATCAAATCTA
1 CAAATCTTATCCCTCTGAAGTTGCAGTAGAGCA--GATTAAAGCTA
* *
23748789 CCATGGCGAATCTTATCTCC-CTGAAGTTGCAG-AGGAGCAGATTGAAGCCA
1 -CA-----AATCTTATC-CCTCTGAAGTTGCAGTA-GAGCAGATTAAAGCTA
* * * ** * *
23748839 CTAATCTTTTCTCCT-TGAAGTTGCAGTGGAGTGGATTGAAGATA
1 CAAATCTTATC-CCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
*
23748883 GCAAATCTTA-CCTCTCTGAAGTTGCATTAGAGCAGATTAAAGCTA
1 -CAAATCTTATCC-CTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * * * * *
23748928 TAAACCTTATCTCC-CTAAAGTTGCAGTGGAGCAGGTTAAAGTTA
1 CAAATCTTATC-CCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
* * *
23748972 CAAGTCTTATCTCACTGAAGTTGCAGT
1 CAAATCTTATCCCTCTGAAGTTGCAGT
23748999 GGAGTGGATC
Statistics
Matches: 329, Mismatches: 71, Indels: 88
0.67 0.15 0.18
Matches are distributed among these distances:
43 4 0.01
44 156 0.47
45 71 0.22
46 2 0.01
48 1 0.00
49 5 0.02
50 52 0.16
51 30 0.09
52 3 0.01
56 2 0.01
57 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
CAAATCTTATCCCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA
Found at i:23748764 original size:50 final size:51
Alignment explanation
Indices: 23748646--23748771 Score: 139
Period size: 50 Copynumber: 2.5 Consensus size: 51
23748636 GAAGATAGTG
* *
23748646 AATCTTATTTCCTTGAAGTTGCAGTGGAACAAAATAAAGCTACAAATTACA
1 AATCTTATCTCCTTGAAGTTGCAGTGGAACAAAATAAAGCTACAAATCACA
* * * * * *
23748697 AATCTTATCTCCCTGAAGTTGCAGTGGAA-TAGATCAAGCTACAAGTCATA
1 AATCTTATCTCCTTGAAGTTGCAGTGGAACAAAATAAAGCTACAAATCACA
* *
23748747 AATCTTATAC-CTTTGAAGTTACAGT
1 AATCTTAT-CTCCTTGAAGTTGCAGT
23748772 AGGATGGATC
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
50 35 0.56
51 28 0.44
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (51 bp):
AATCTTATCTCCTTGAAGTTGCAGTGGAACAAAATAAAGCTACAAATCACA
Found at i:23748999 original size:44 final size:44
Alignment explanation
Indices: 23748797--23749002 Score: 214
Period size: 44 Copynumber: 4.7 Consensus size: 44
23748787 TACCATGGCG
* * * *
23748797 AATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGCCACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * ** * *
23748841 AATCTTTTCTCCTTGAAGTTGCAGTGGAGTGGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CA
* * * * *
23748886 AATCTTACCTCTCTGAAGTTGCATTAGAGCAGATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * *
23748930 AACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* *
23748974 AGTCTTATCTCACTGAAGTTGCAGTGGAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG
23749003 TGGATCGACT
Statistics
Matches: 129, Mismatches: 32, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
44 96 0.74
45 33 0.26
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
Found at i:23749518 original size:14 final size:12
Alignment explanation
Indices: 23749487--23749596 Score: 57
Period size: 12 Copynumber: 8.8 Consensus size: 12
23749477 TTCTTTACTC
23749487 TTTTA-TTTATT
1 TTTTATTTTATT
23749498 TTCTTATTTTCAATT
1 TT-TTATTTT--ATT
23749513 TTTTATTTTATT
1 TTTTATTTTATT
23749525 TGTTTATTTACTTATT
1 T-TTTA-TT--TTATT
* *
23749541 TTTTAACTTGTATG
1 TTTT-A-TTTTATT
23749555 TTTTA-TTT-TT
1 TTTTATTTTATT
* *
23749565 ATTTCTTTTATT
1 TTTTATTTTATT
* *
23749577 ATTTATCTTA-T
1 TTTTATTTTATT
23749588 TTTTATTTT
1 TTTTATTTT
23749597 TTGCTCTTAT
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
10 4 0.05
11 15 0.19
12 17 0.22
13 8 0.10
14 16 0.21
15 8 0.10
16 9 0.12
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:23751150 original size:15 final size:15
Alignment explanation
Indices: 23751130--23751159 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23751120 CTTTTTAAAA
23751130 TTTAAAATTATATAT
1 TTTAAAATTATATAT
*
23751145 TTTAAAATTTTATAT
1 TTTAAAATTATATAT
23751160 AAAAGATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAAAATTATATAT
Found at i:23753299 original size:20 final size:20
Alignment explanation
Indices: 23753274--23753312 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23753264 TAAATGTATA
23753274 TTAAAAAAT-TACTAAAAATC
1 TTAAAAAATATA-TAAAAATC
*
23753294 TTAAAAGATATATAAAAAT
1 TTAAAAAATATATAAAAAT
23753313 ACTAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (20 bp):
TTAAAAAATATATAAAAATC
Found at i:23753836 original size:17 final size:17
Alignment explanation
Indices: 23753814--23753851 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
23753804 TCTCCATTGG
23753814 ATGTTCATTGATAGATA
1 ATGTTCATTGATAGATA
23753831 ATGTTCATTGATAGATA
1 ATGTTCATTGATAGATA
23753848 ATGT
1 ATGT
23753852 GCCTCGTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.42
Consensus pattern (17 bp):
ATGTTCATTGATAGATA
Found at i:23755665 original size:11 final size:11
Alignment explanation
Indices: 23755651--23755695 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
23755641 AAATAAATAT
23755651 TATTTTATTAA
1 TATTTTATTAA
*
23755662 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
23755675 TATTTTATTAT
1 TATTTTATTAA
23755686 TATTTTATTA
1 TATTTTATTA
23755696 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:23757587 original size:46 final size:46
Alignment explanation
Indices: 23757535--23757907 Score: 478
Period size: 46 Copynumber: 8.1 Consensus size: 46
23757525 GCTCCCTGAA
**
23757535 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** *
23757581 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
23757627 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACATGAG
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
23757673 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
23757719 ATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGAAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * *
23757765 GGGAAATGAATAAGACCATGGTTAAAAGATACCATGGCAGCGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * *
23757811 GTGAAATGAATAAGACCATGGTTGAAAGATACCAAGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
23757857 ATGAAAAGAATAAGACCATGGTTGAAAAATACCATGACAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
23757903 A-GAAA
1 ATGAAA
23757908 ATGAGTATTT
Statistics
Matches: 293, Mismatches: 34, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
45 4 0.01
46 289 0.99
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:23757783 original size:138 final size:139
Alignment explanation
Indices: 23757535--23757911 Score: 535
Period size: 138 Copynumber: 2.7 Consensus size: 139
23757525 GCTCCCTGAA
* * * **
23757535 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
* * ** *
23757600 GGTTGAAAGATACCATGACAACATGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGC
66 GGTTGAAAGATACCATGACAACATGACAGGAAATGAATAAAACCATGGTTAAAAGATACCATGGC
23757665 AACATGA-G
131 AACATGATG
23757673 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
* * *
23757738 GGTTGAGAGATACCATGGA-AACATGACGGGAAATGAATAAGACCATGGTTAAAAGATACCATGG
66 GGTTGAAAGATACCAT-GACAACATGACAGGAAATGAATAAAACCATGGTTAAAAGATACCATGG
* *
23757802 CAGCGTGATG
130 CAACATGATG
** *
23757812 -TGAAATGAATAAGACCATGGTTGAAAGATACCAAGGCAACGTGACATGAAAAGAATAAGACCAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
* * *
23757876 GGTTGAAAAATACCATGACAACATGATAGAAAATGA
66 GGTTGAAAGATACCATGACAACATGACAGGAAATGA
23757912 GTATTTATAA
Statistics
Matches: 213, Mismatches: 23, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
137 2 0.01
138 208 0.98
139 3 0.01
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.20
Consensus pattern (139 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCAT
GGTTGAAAGATACCATGACAACATGACAGGAAATGAATAAAACCATGGTTAAAAGATACCATGGC
AACATGATG
Found at i:23760514 original size:20 final size:20
Alignment explanation
Indices: 23760489--23760527 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23760479 TAAATGTATA
23760489 TTAAAAAAT-TACTAAAAATC
1 TTAAAAAATATA-TAAAAATC
*
23760509 TTAAAAGATATATAAAAAT
1 TTAAAAAATATATAAAAAT
23760528 ACTAATCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (20 bp):
TTAAAAAATATATAAAAATC
Found at i:23762525 original size:48 final size:48
Alignment explanation
Indices: 23762408--23762540 Score: 148
Period size: 48 Copynumber: 2.8 Consensus size: 48
23762398 GTGATAATTT
* * *
23762408 TAAATTTTCAATACTA-TTCAATATTTTTTTAATTTATGCAAATTTAAA
1 TAAATTTGCAATACTACTT-GATATTTTTTTCATTTATGCAAATTTAAA
* * *
23762456 TAAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAAT
1 TAAATTTGCAATACTACTTGATATTTTTTTCATTTATGCAAATT-TAAA
*
23762504 TACAATTT-CAATACTGCTTGAT-TTTTTTTCATTTATG
1 TA-AATTTGCAATACTACTTGATATTTTTTTCATTTATG
23762541 ATGTTTGCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
47 18 0.24
48 49 0.66
49 7 0.09
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.51
Consensus pattern (48 bp):
TAAATTTGCAATACTACTTGATATTTTTTTCATTTATGCAAATTTAAA
Found at i:23764153 original size:18 final size:18
Alignment explanation
Indices: 23764130--23764167 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
23764120 TGATAGGTGC
*
23764130 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
23764148 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
23764166 GT
1 GT
23764168 TTCTTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:23768086 original size:16 final size:16
Alignment explanation
Indices: 23768067--23768097 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23768057 CTTCTTCACT
23768067 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
23768083 TACTTACTTACTTAA
1 TACTCACTTACTTAA
23768098 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:23768103 original size:20 final size:20
Alignment explanation
Indices: 23768064--23768103 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23768054 AAACTTCTTC
* *
23768064 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
23768084 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
23768104 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:23768421 original size:53 final size:53
Alignment explanation
Indices: 23768341--23768545 Score: 232
Period size: 55 Copynumber: 3.8 Consensus size: 53
23768331 ATCCTTTTGA
* * *
23768341 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGTTATCTTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATG
* * * *
23768394 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTAT-G
* * * * * *
23768448 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATG
*
23768502 AACCTTACCAATTGCCATACCTT-AGCATGGTCTTACATGGTATC
1 AA-CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATC
23768546 CTTGAACCCT
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
53 47 0.38
54 10 0.08
55 68 0.54
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATG
Found at i:23768485 original size:108 final size:110
Alignment explanation
Indices: 23768341--23768541 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
23768331 ATCCTTTTGA
* * *
23768341 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG-TTATCTTTGCCTTATGAA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATT-TCCTTGCCTTAGGAACCTCACCAA
* *
23768404 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATACCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* *
23768449 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGGAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGGAACCTCACCAAT
23768514 TGCCATACCTTAGCATGGTCTTACATGG
66 TGCCATACCTTAGCATGGTCTTACATGG
23768542 TATCCTTGAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
108 48 0.58
109 9 0.11
110 26 0.31
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGGAACCTCACCAAT
TGCCATACCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:23768548 original size:55 final size:53
Alignment explanation
Indices: 23768294--23768549 Score: 224
Period size: 55 Copynumber: 4.8 Consensus size: 53
23768284 ACACGGGTAC
* * * *
23768294 CTTACC-ATTGCCATGACTTTCCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATG-CCTTGCATGGTCTTACATGGTATCCTTGCCTTAGGAA
* * * *
23768343 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGTTATCTTTGCCTTATGAA
1 CTTACCAATTGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTAGGAA
* * *
23768396 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTT-GCATGGTCTTACATGGTATCC-TTGCC-T-TAGGAA
* * * *
23768451 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGGAA
1 CTTACCAATTGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTAGGAA
*
23768504 CCTTACCAATTGCCATACCTTAGCATGGTCTTACATGGTATCCTTG
1 -CTTACCAATTGCCATGCCTT-GCATGGTCTTACATGGTATCCTTG
23768550 AACCCTAATG
Statistics
Matches: 165, Mismatches: 27, Indels: 24
0.76 0.12 0.11
Matches are distributed among these distances:
48 2 0.01
49 34 0.21
52 3 0.02
53 42 0.25
54 12 0.07
55 69 0.42
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATTGCCATGCCTTGCATGGTCTTACATGGTATCCTTGCCTTAGGAA
Found at i:23770682 original size:126 final size:126
Alignment explanation
Indices: 23770457--23770964 Score: 854
Period size: 126 Copynumber: 4.0 Consensus size: 126
23770447 TTATAGCCTC
* *
23770457 ATTTTTCTACGATCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTACTG
*
23770522 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
23770583 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTACTG
* *
23770648 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAACGTCTACTCGGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
23770709 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCAAGTGAGAGCATTTTCCAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTACTG
*
23770774 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAATGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
*
23770835 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTACTG
* * * * *
23770900 ACAGTGCATCCTGCTTAAAGCATTTTTTGACACTATTTGTCCAGAAACGTCTGCTCAGAATT
66 ACAGTGCATCCTGCTTGAAGC-GTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
23770962 ATT
1 ATT
23770965 CTTACAGAAA
Statistics
Matches: 359, Mismatches: 22, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
126 321 0.89
127 38 0.11
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTACTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:23771534 original size:20 final size:20
Alignment explanation
Indices: 23771509--23771581 Score: 64
Period size: 20 Copynumber: 3.8 Consensus size: 20
23771499 ACCATTATGT
23771509 ATCAATTAACCCTAAAATTA
1 ATCAATTAACCCTAAAATTA
* * *
23771529 ATCAATTAATCCTAAACCCTAA
1 ATCAATTAACCCTAAA--ATTA
*
23771551 ATCAA-T--CCCT-AATTTA
1 ATCAATTAACCCTAAAATTA
23771567 ATCAATTAACCCTAA
1 ATCAATTAACCCTAA
23771582 TACCCTAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
16 7 0.17
17 1 0.02
18 2 0.05
19 7 0.17
20 16 0.39
21 1 0.02
22 7 0.17
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (20 bp):
ATCAATTAACCCTAAAATTA
Found at i:23771602 original size:34 final size:36
Alignment explanation
Indices: 23771526--23771602 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 36
23771516 AACCCTAAAA
*
23771526 TTAATCAATTAATCCTAAACCCTAAATCAATCCCTAAT
1 TTAATCAATTAACCCTAAACCCTAAATC-AT-CCTAAT
23771564 TTAATCAATTAACCCTAATACCCTAAA-C-T-CTAAT
1 TTAATCAATTAACCCTAA-ACCCTAAATCATCCTAAT
23771598 TTAAT
1 TTAAT
23771603 ATTTAGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
34 10 0.27
36 1 0.03
38 18 0.49
39 8 0.22
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.34
Consensus pattern (36 bp):
TTAATCAATTAACCCTAAACCCTAAATCATCCTAAT
Found at i:23771673 original size:8 final size:8
Alignment explanation
Indices: 23771660--23771732 Score: 60
Period size: 8 Copynumber: 9.2 Consensus size: 8
23771650 TTTTTTCCTA
23771660 AAAACCCT
1 AAAACCCT
23771668 AAAACCCT
1 AAAACCCT
* *
23771676 AAGACCCA
1 AAAACCCT
*
23771684 AAAAACCT
1 AAAACCCT
*
23771692 AAAACCCA
1 AAAACCCT
*
23771700 AAAAACCT
1 AAAACCCT
* *
23771708 -TAACCAT
1 AAAACCCT
23771715 -AAACCCT
1 AAAACCCT
23771722 AAAAACCCT
1 -AAAACCCT
23771731 AA
1 AA
23771733 CCCTAAATCA
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
7 9 0.18
8 33 0.67
9 7 0.14
ACGTcount: A:0.55, C:0.33, G:0.01, T:0.11
Consensus pattern (8 bp):
AAAACCCT
Found at i:23771687 original size:16 final size:16
Alignment explanation
Indices: 23771660--23771707 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
23771650 TTTTTTCCTA
* *
23771660 AAAACCCTAAAACCCT
1 AAAACCCAAAAAACCT
*
23771676 AAGACCCAAAAAACCT
1 AAAACCCAAAAAACCT
23771692 AAAACCCAAAAAACCT
1 AAAACCCAAAAAACCT
23771708 TAACCATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.56, C:0.33, G:0.02, T:0.08
Consensus pattern (16 bp):
AAAACCCAAAAAACCT
Found at i:23771718 original size:22 final size:22
Alignment explanation
Indices: 23771693--23771739 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
23771683 AAAAAACCTA
*
23771693 AAACCCAAAAAACCTTAACCAT
1 AAACCCAAAAAACCCTAACCAT
* *
23771715 AAACCCTAAAAACCCTAACCCT
1 AAACCCAAAAAACCCTAACCAT
23771737 AAA
1 AAA
23771740 TCAATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.13
Consensus pattern (22 bp):
AAACCCAAAAAACCCTAACCAT
Found at i:23774382 original size:21 final size:21
Alignment explanation
Indices: 23774358--23774398 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
23774348 TCAAAACGAT
*
23774358 ATAGTTTAGCCTTTTAACTTA
1 ATAGTTTAGACTTTTAACTTA
*
23774379 ATAGTTTTGACTTTTAACTT
1 ATAGTTTAGACTTTTAACTT
23774399 TAGAAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (21 bp):
ATAGTTTAGACTTTTAACTTA
Found at i:23774600 original size:21 final size:21
Alignment explanation
Indices: 23774571--23774619 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
23774561 TGTAATACCA
23774571 TGTAGTTGGTCGGAGGTTGAAT
1 TGTA-TTGGTCGGAGGTTGAAT
23774593 TGTATTGGTCGGAGGTTGAAT
1 TGTATTGGTCGGAGGTTGAAT
23774614 TGTATT
1 TGTATT
23774620 ATTATCTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.18, C:0.04, G:0.37, T:0.41
Consensus pattern (21 bp):
TGTATTGGTCGGAGGTTGAAT
Found at i:23787481 original size:4 final size:4
Alignment explanation
Indices: 23787474--23787500 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
23787464 AGTGTATGAT
23787474 TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA
23787501 TAACAACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:23787755 original size:30 final size:28
Alignment explanation
Indices: 23787719--23787776 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
23787709 ACTATTGAAG
*
23787719 TATTTTTAGTTTCACACTTTGATACTTAAA
1 TATTTTTAGTCTCA-A-TTTGATACTTAAA
* *
23787749 TATTTTTTGTCTCAATTTGGTACTTAAA
1 TATTTTTAGTCTCAATTTGATACTTAAA
23787777 GAATCAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.48
29 1 0.04
30 12 0.48
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.52
Consensus pattern (28 bp):
TATTTTTAGTCTCAATTTGATACTTAAA
Found at i:23794476 original size:23 final size:23
Alignment explanation
Indices: 23794395--23794480 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 23
23794385 CTGATCAGAG
*
23794395 TACGACACATAAAGTGCCT-AAA
1 TACGACACACAAAGTGCCTGAAA
* * *
23794417 -ATGACACACGAGGTGCCTG--A
1 TACGACACACAAAGTGCCTGAAA
* * *
23794437 CACGACACACGAGGTGCCTGAAA
1 TACGACACACAAAGTGCCTGAAA
*
23794460 TACGACACATAAAGTGCCTGA
1 TACGACACACAAAGTGCCTGA
23794481 TCAGTAAAGC
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.63
23 18 0.35
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (23 bp):
TACGACACACAAAGTGCCTGAAA
Found at i:23794876 original size:15 final size:15
Alignment explanation
Indices: 23794851--23794904 Score: 81
Period size: 15 Copynumber: 3.5 Consensus size: 15
23794841 TCATATATAT
23794851 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
23794867 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
23794882 AATAATTTCAATCAA
1 TATAAATTCAATCAA
23794897 TATAAATT
1 TATAAATT
23794905 TAATAAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:23796152 original size:20 final size:20
Alignment explanation
Indices: 23796127--23796173 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
23796117 CGTTTCATTC
23796127 TGTTTCTATTTCCTTTCTTT
1 TGTTTCTATTTCCTTTCTTT
23796147 TGTTTCTATTTCCTTTCTTT
1 TGTTTCTATTTCCTTTCTTT
23796167 TGTTTCT
1 TGTTTCT
23796174 TTAGTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.04, C:0.19, G:0.06, T:0.70
Consensus pattern (20 bp):
TGTTTCTATTTCCTTTCTTT
Found at i:23796238 original size:8 final size:8
Alignment explanation
Indices: 23796225--23796253 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
23796215 TATCTTTATT
23796225 ATATAATA
1 ATATAATA
23796233 ATATAATA
1 ATATAATA
23796241 ATATAATA
1 ATATAATA
23796249 ATATA
1 ATATA
23796254 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:23797511 original size:20 final size:20
Alignment explanation
Indices: 23797486--23797523 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23797476 AAAATAGAGA
23797486 AAATTGAAACTTTAAGTACT
1 AAATTGAAACTTTAAGTACT
* *
23797506 AAATTGGAAGTTTAAGTA
1 AAATTGAAACTTTAAGTA
23797524 TCAAAATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (20 bp):
AAATTGAAACTTTAAGTACT
Found at i:23803204 original size:21 final size:21
Alignment explanation
Indices: 23803180--23803220 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
23803170 TCAAAACGAC
*
23803180 ATAGTTTAGCCTTTTAACTTA
1 ATAGTTTAGACTTTTAACTTA
*
23803201 ATAGTTTTGACTTTTAACTT
1 ATAGTTTAGACTTTTAACTT
23803221 TAAAAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (21 bp):
ATAGTTTAGACTTTTAACTTA
Found at i:23807455 original size:20 final size:23
Alignment explanation
Indices: 23807425--23807473 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
23807415 TGCTTTTGTC
*
23807425 TTCTATCTTGTT-TT-TGTTTTT
1 TTCTATCTTGTTGTTATGTTATT
23807446 TTCT-TCTTGTTGTTATGTTATT
1 TTCTATCTTGTTGTTATGTTATT
23807468 TTCTAT
1 TTCTAT
23807474 TTCAATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 7 0.29
21 6 0.25
22 10 0.42
23 1 0.04
ACGTcount: A:0.08, C:0.10, G:0.10, T:0.71
Consensus pattern (23 bp):
TTCTATCTTGTTGTTATGTTATT
Found at i:23808412 original size:6 final size:6
Alignment explanation
Indices: 23808401--23808429 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
23808391 TTCTCCTTAT
23808401 TCTTCA TCTTCA TCTTCA TCTTCA TCTTC
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTC
23808430 TTTTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.34, G:0.00, T:0.52
Consensus pattern (6 bp):
TCTTCA
Found at i:23809594 original size:32 final size:31
Alignment explanation
Indices: 23809558--23809664 Score: 115
Period size: 32 Copynumber: 3.4 Consensus size: 31
23809548 CGTGGTTCTA
* * *
23809558 TGAAATAATAACAAATATCAGCTTTCATTTTG
1 TGAAATGATAACAAAT-TCAACTTTAATTTTG
* *
23809590 TGAAATGGTAACAAATTACAACTTTAATTTTT
1 TGAAATGATAACAAATT-CAACTTTAATTTTG
* *
23809622 TGAAATGATAATAATTGTCAACTTTAATTTTG
1 TGAAATGATAACAAAT-TCAACTTTAATTTTG
*
23809654 TTAAATGATAA
1 TGAAATGATAA
23809665 TAATATTCTT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
31 1 0.02
32 61 0.97
33 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.40
Consensus pattern (31 bp):
TGAAATGATAACAAATTCAACTTTAATTTTG
Found at i:23817439 original size:19 final size:19
Alignment explanation
Indices: 23817411--23817449 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
23817401 AGAGCGAAAG
23817411 AAACGAG-AAATAGGCCAA
1 AAACGAGAAAATAGGCCAA
23817429 AAACAGAGAAAATAGGCCAA
1 AAAC-GAGAAAATAGGCCAA
23817449 A
1 A
23817450 GTACGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 3 0.16
20 12 0.63
ACGTcount: A:0.59, C:0.15, G:0.21, T:0.05
Consensus pattern (19 bp):
AAACGAGAAAATAGGCCAA
Found at i:23824430 original size:6 final size:6
Alignment explanation
Indices: 23824378--23824451 Score: 51
Period size: 6 Copynumber: 11.5 Consensus size: 6
23824368 TTTAGAAATA
** *
23824378 TTTATT TATTATT TTATATT TTTAATT TTTATT CAAACTACT TTTATT
1 TTTATT T-TTATT TT-TATT TTT-ATT TTTATT ---TTTATT TTTATT
*
23824426 TTTATT TTTA-T TTTATT CTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
23824452 TAGCAGATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
5 5 0.09
6 27 0.51
7 18 0.34
9 3 0.06
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (6 bp):
TTTATT
Found at i:23824441 original size:17 final size:17
Alignment explanation
Indices: 23824419--23824451 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23824409 TTCAAACTAC
*
23824419 TTTTATTTTTATTTTTA
1 TTTTATTCTTATTTTTA
23824436 TTTTATTCTTATTTTT
1 TTTTATTCTTATTTTT
23824452 TAGCAGATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTATTCTTATTTTTA
Found at i:23827593 original size:14 final size:13
Alignment explanation
Indices: 23827573--23827604 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
23827563 AATATTTAAC
23827573 TTGTTCTTAATTA
1 TTGTTCTTAATTA
23827586 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
23827600 TTGTT
1 TTGTT
23827605 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:23834791 original size:11 final size:11
Alignment explanation
Indices: 23834775--23834803 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
23834765 AATTTTTTTT
23834775 AAAAAATAATA
1 AAAAAATAATA
23834786 AAAAAAT-ATA
1 AAAAAATAATA
23834796 AAAAAATA
1 AAAAAATA
23834804 TTTTAATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAAATAATA
Found at i:23841944 original size:22 final size:22
Alignment explanation
Indices: 23841910--23841973 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
23841900 TCAACATTTT
*
23841910 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
23841932 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
23841953 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
23841974 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:23841970 original size:16 final size:15
Alignment explanation
Indices: 23841947--23841988 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 15
23841937 ATATATAATA
23841947 ATATAAAATTACATT
1 ATATAAAATTACATT
23841962 ATATAAAAATTACATT
1 ATAT-AAAATTACATT
23841978 A-A-AAAATTACA
1 ATATAAAATTACA
23841989 AAACACTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 9 0.35
15 5 0.19
16 12 0.46
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (15 bp):
ATATAAAATTACATT
Found at i:23842390 original size:112 final size:113
Alignment explanation
Indices: 23842036--23842704 Score: 1062
Period size: 112 Copynumber: 5.9 Consensus size: 113
23842026 ATACTAACAC
* * *
23842036 AAAATAACTATAAAATTATTTTTTT-AAATACATTACTAAATAAAAATCACAATACATTAATACA
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACT-AA-AAAAATCACAATACACTAAT--A
23842100 CACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAAT
62 -ACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
23842151 AAAATAGCTATAAAAATATTTTTTTTAAATATATTACTAAAAAAAAATCACAATACACTAATACA
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACT--AAAAAAATCACAATACACTAATA-A
*
23842216 CTAAACCACTAAACACTAATAATTTATATAACCTAATCTTAAATTACTAAT
63 CTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* * *
23842267 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAAT-ACTA
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATAACTA
23842331 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
23842379 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAAT-ACTA
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATAACTA
23842443 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
23842491 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAAT-ACTA
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATAACTA
*
23842555 AACCGCTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
23842603 AAAATAGCTATAAAATTATTTTTTTAAAAATATATTACTAAAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAATTATTTTTTT-AAAATATATTACTAAAAAAATCACAATACACTAATA-AC
* *
23842668 TAAACTACTAAACACTAACAATTTATATAACCAAATC
64 TAAACCACTAAACACTAACAATTTATATAACCTAATC
23842705 AACTATAACT
Statistics
Matches: 531, Mismatches: 16, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
112 298 0.56
113 33 0.06
114 44 0.08
115 59 0.11
116 94 0.18
117 3 0.01
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.33
Consensus pattern (113 bp):
AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATAACTA
AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:23842982 original size:3 final size:3
Alignment explanation
Indices: 23842976--23843058 Score: 67
Period size: 3 Copynumber: 26.3 Consensus size: 3
23842966 CTTTTTTTTT
* **
23842976 TTC TTC TTCC TTC TTC TTC TTTC TTC TTC TTC TCC TTC ACC TTCC TTC
1 TTC TTC TT-C TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TT-C TTC
* ** *
23843024 TTC TTC TCC TTC ACC TTCC TTC TTC TTC TCC TTC T
1 TTC TTC TTC TTC TTC TT-C TTC TTC TTC TTC TTC T
23843059 CCTTTCTCTC
Statistics
Matches: 62, Mismatches: 14, Indels: 8
0.74 0.17 0.10
Matches are distributed among these distances:
3 50 0.81
4 12 0.19
ACGTcount: A:0.02, C:0.41, G:0.00, T:0.57
Consensus pattern (3 bp):
TTC
Found at i:23842991 original size:10 final size:10
Alignment explanation
Indices: 23842976--23843051 Score: 63
Period size: 10 Copynumber: 7.9 Consensus size: 10
23842966 CTTTTTTTTT
23842976 TTCTTCTTCC
1 TTCTTCTTCC
23842986 TTCTTCTT-C
1 TTCTTCTTCC
23842995 -T-TTCTT-C
1 TTCTTCTTCC
23843002 TTCTTC-TCC
1 TTCTTCTTCC
**
23843011 TTCACCTTCC
1 TTCTTCTTCC
23843021 TTCTTCTTCTCC
1 TTCTTC-T-TCC
**
23843033 TTCACCTTCC
1 TTCTTCTTCC
23843043 TTCTTCTTC
1 TTCTTCTTC
23843052 TCCTTCTCCT
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.12
8 3 0.06
9 9 0.17
10 25 0.48
11 2 0.04
12 7 0.13
ACGTcount: A:0.03, C:0.41, G:0.00, T:0.57
Consensus pattern (10 bp):
TTCTTCTTCC
Found at i:23843028 original size:28 final size:24
Alignment explanation
Indices: 23842976--23843062 Score: 101
Period size: 22 Copynumber: 3.7 Consensus size: 24
23842966 CTTTTTTTTT
**
23842976 TTCTTCTTCCTTCTTCTTCTTTCTTC
1 TTCTTC-TCCTTCACCTTC-TTCTTC
23843002 TTCTTCTCCTTCACCTTC--CTTC
1 TTCTTCTCCTTCACCTTCTTCTTC
23843024 TTCTTCTCCTTCACCTTC--CTTC
1 TTCTTCTCCTTCACCTTCTTCTTC
*
23843046 TTCTTCTCCTTCTCCTT
1 TTCTTCTCCTTCACCTT
23843063 TCTCTCCTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
22 42 0.72
25 10 0.17
26 6 0.10
ACGTcount: A:0.02, C:0.41, G:0.00, T:0.56
Consensus pattern (24 bp):
TTCTTCTCCTTCACCTTCTTCTTC
Found at i:23843074 original size:22 final size:22
Alignment explanation
Indices: 23842998--23843062 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
23842988 CTTCTTCTTT
23842998 CTTCTTCTTCTCCTTCACCTTC
1 CTTCTTCTTCTCCTTCACCTTC
23843020 CTTCTTCTTCTCCTTCACCTTC
1 CTTCTTCTTCTCCTTCACCTTC
*
23843042 CTTCTTCTTCTCCTTCTCCTT
1 CTTCTTCTTCTCCTTCACCTT
23843063 TCTCTCCTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.03, C:0.45, G:0.00, T:0.52
Consensus pattern (22 bp):
CTTCTTCTTCTCCTTCACCTTC
Found at i:23848752 original size:46 final size:44
Alignment explanation
Indices: 23848648--23848755 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
23848638 TGTCTTTGAC
** * * *
23848648 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
23848692 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
23848738 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
23848756 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:23854694 original size:46 final size:44
Alignment explanation
Indices: 23854590--23854697 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
23854580 TGTCTTTGAC
** * * *
23854590 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
23854634 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
23854680 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
23854698 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:23864366 original size:34 final size:34
Alignment explanation
Indices: 23864320--23864385 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
23864310 CATCATTTAC
* * *
23864320 TGCCAAGCAATAACTCCATTGACAATAATAGAAA
1 TGCCAAGAAATAACTCCACTAACAATAATAGAAA
23864354 TGCCAAGAAATAACTCCACTAACAATAATAGA
1 TGCCAAGAAATAACTCCACTAACAATAATAGA
23864386 CATCCTACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.48, C:0.21, G:0.11, T:0.20
Consensus pattern (34 bp):
TGCCAAGAAATAACTCCACTAACAATAATAGAAA
Found at i:23869127 original size:21 final size:21
Alignment explanation
Indices: 23869103--23869143 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23869093 ATGTTGAATA
*
23869103 ATATTTTTTAATAAA-TAATTT
1 ATATTTTGTAA-AAATTAATTT
23869124 ATATTTTGTAAAAATTAATT
1 ATATTTTGTAAAAATTAATT
23869144 AATTATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
ATATTTTGTAAAAATTAATTT
Found at i:23871542 original size:131 final size:130
Alignment explanation
Indices: 23871394--23871769 Score: 303
Period size: 130 Copynumber: 2.9 Consensus size: 130
23871384 AATAAAGACC
* * * * *
23871394 TAAAGGAATACTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACAATAAGGCATGATTC
1 TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACAATAAGGCACGATCC
* * * *
23871459 C-CGAATTGCCAAACACC-GAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGAGC-CGAGTGAA
66 CACGAATTGCCAAACACCAGA-TATCGCCTTCGTTTT-AAGGA-TTTTAAAAGA-CACAAGCGAA
23871521 ATTT
127 ATTT
* * * ** ** * ** *
23871525 TGAAGGGATATTTGATTGTTTTAAAC-AATTAGAAATTGCTACCCAACACGTTAGGGCACGATCC
1 TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACAATAAGGCACGATCC
* *
23871589 CACGAATTGCCAAATACCAGATATCGCCTTCGTTTTAGGGATTTTAAAAGACACAAGCGAAATTT
66 CACGAATTGCCAAACACCAGATATCGCCTTCGTTTTAAGGATTTTAAAAGACACAAGCGAAATTT
* * * * * ** ** * **
23871654 TAAAGTGATATTCGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATTT
1 TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACAATAAGGCACGATCC
* * * * * **
23871719 CGCGAATTGCAAAACATCAAATCTCATCTTCG-TTTAAGGGATTTTAAAAGA
66 CACGAATTGCCAAACACCAGATATCGCCTTCGTTTTAA-GGATTTTAAAAGA
23871770 TGTGAATGGA
Statistics
Matches: 198, Mismatches: 42, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
128 1 0.01
129 43 0.22
130 102 0.52
131 50 0.25
132 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (130 bp):
TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACAATAAGGCACGATCC
CACGAATTGCCAAACACCAGATATCGCCTTCGTTTTAAGGATTTTAAAAGACACAAGCGAAATTT
Found at i:23871703 original size:130 final size:129
Alignment explanation
Indices: 23871460--23871884 Score: 408
Period size: 130 Copynumber: 3.3 Consensus size: 129
23871450 GCATGATTCC
* * * *
23871460 CGAATTGCCAAACACC-GAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGAGCCGAGTGAAATT
1 CGAATTGCCAAACACCAGA-TATCGCCTTCGTTTT-AGGGA-TTTTAAAAGAGCCAAG-GAAATT
* * * * ** *
23871524 TTGAAGGGATATTTGATTGTTTTAAAC-AATTAGAAATTGCTACCCAACACGTTAGGGCACGATC
62 TTGAAGGGATATTCGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATC
23871588 CCA
127 CCA
*
23871591 CGAATTGCCAAATACCAGATATCGCCTTCGTTTTAGGGATTTTAAAAGA-CACAAGCGAAATTTT
1 CGAATTGCCAAACACCAGATATCGCCTTCGTTTTAGGGATTTTAAAAGAGC-CAAG-GAAATTTT
* * **
23871655 AAAGTGATATTCGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATTTC
64 GAAGGGATATTCGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATCCC
*
23871720 G
129 A
* * * * ** * ** *
23871721 CGAATTGCAAAACATCAAATCTCATCTTCGTTTAAGGGATTTTAAAAGATGTGAATGG-AATTTC
1 CGAATTGCCAAACACCAGATATCGCCTTCGTTTTAGGGATTTTAAAAGA-GCCAA-GGAAATTTT
* * * **
23871785 GAAGGGAAATTCAATTATTTTGAGCAAATGCAAAATTGCAACCCAACACGTTAGGGCACGATTTC
64 GAAGGGATATTCGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATCCC
*
23871850 G
129 A
* * * * *
23871851 CGAATTGCCGAACATCAAATTTCGTCTTCGTTTT
1 CGAATTGCCAAACACCAGATATCGCCTTCGTTTT
23871885 GAAGAATTTT
Statistics
Matches: 249, Mismatches: 39, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
128 1 0.00
129 39 0.16
130 174 0.70
131 32 0.13
132 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (129 bp):
CGAATTGCCAAACACCAGATATCGCCTTCGTTTTAGGGATTTTAAAAGAGCCAAGGAAATTTTGA
AGGGATATTCGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATCCCA
Found at i:23874866 original size:87 final size:88
Alignment explanation
Indices: 23874700--23874871 Score: 238
Period size: 87 Copynumber: 2.0 Consensus size: 88
23874690 TCCACTGGAG
** * * * * **
23874700 ACGAGATCTGCAATTGTCAGCCTACTTCGCTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATC
1 ACGAGATCTAAAATTGTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATAGTAACTTAAATC
23874765 TGCTCTACTACAACTTCAGGGAA
66 TGCTCTACTACAACTTCAGGGAA
*
23874788 ACGAGATCTAAAATT-TCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTAACTTAAATC
1 ACGAGATCTAAAATTGTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATAGTAACTTAAATC
* *
23874852 TGCTTTACTGCAACTTCAGG
66 TGCTCTACTACAACTTCAGG
23874872 AAGTCAAGAT
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
87 60 0.82
88 13 0.18
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (88 bp):
ACGAGATCTAAAATTGTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATAGTAACTTAAATC
TGCTCTACTACAACTTCAGGGAA
Found at i:23874999 original size:132 final size:132
Alignment explanation
Indices: 23874762--23875180 Score: 676
Period size: 132 Copynumber: 3.2 Consensus size: 132
23874752 GGTGGCTTAA
* *
23874762 ATCTGCTCTACTACAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTA
* * * *
23874827 GGGAGCTAGGTTAGTAACTTAAATCTGCTTTACTGCAACTTCAGGAAGTCAAGATTCCTTGTCTT
66 GGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTT
23874892 TG
131 TG
*
23874894 ATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATGTCAACCTACTCCACTACAACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTA
* *
23874959 GGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGAGGTCAAGATTCGTCATCTT
66 GGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTT
23875024 TG
131 TG
* * *
23875026 ATCTACTCCACTGTAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAATTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTA
*
23875091 GGGAGTTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTT
66 GGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTT
**
23875156 CA
131 TG
* * *
23875158 ATCTGCTTCACTGAAACCTCAGG
1 ATCTGCTCCACTGCAACTTCAGG
23875181 AAGTCAAGAT
Statistics
Matches: 265, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 265 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (132 bp):
ATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTA
GGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTT
TG
Found at i:23875180 original size:45 final size:45
Alignment explanation
Indices: 23875112--23875369 Score: 204
Period size: 45 Copynumber: 5.8 Consensus size: 45
23875102 TAGTGACTTA
23875112 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
* * * *
23875157 AATCTGCTTCACTGAAACCTCAGGAAGTCAAGATTCATCGTCTTT
1 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
* * * * * * **
23875202 GATTTGCTCCACTGTAACTTCAGGGAA-ACGAGA-TC-TAAAAT-TTC
1 AATCTGCTTCACTGCAACTTCA-GGAAGTCAAGATTCGT--CGTCTTC
* * * * * * * ** * * *
23875246 AACCTACTCCACTACAACTTTAGGGAG-CTAGGCTAGT-GACTTA
1 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
23875289 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
* * *
23875334 GATCTGCTTCACTGCAACCTCAGGAAGCCAAGATTC
1 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTC
23875370 ACCGATATTG
Statistics
Matches: 161, Mismatches: 43, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
43 30 0.19
44 26 0.16
45 101 0.63
46 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (45 bp):
AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
Found at i:23875214 original size:177 final size:177
Alignment explanation
Indices: 23874980--23875370 Score: 674
Period size: 177 Copynumber: 2.2 Consensus size: 177
23874970 TAGTGACTTA
* * *
23874980 AATCTGCTTCACTGCAACTTCAGGAGGTCAAGATTCGTCATCTTTGATCTACTCCACTGTAACTT
1 AATCTGCTTCACTGCAACCTCAGGAAGTCAAGATTCATCATCTTTGATCTACTCCACTGTAACTT
* * *
23875045 CAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAATTTTAGGGAGTTAGGTTAGTGACT
66 CAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGCTAGTGACT
23875110 TAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
131 TAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
* * * *
23875157 AATCTGCTTCACTGAAACCTCAGGAAGTCAAGATTCATCGTCTTTGATTTGCTCCACTGTAACTT
1 AATCTGCTTCACTGCAACCTCAGGAAGTCAAGATTCATCATCTTTGATCTACTCCACTGTAACTT
23875222 CAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGCTAGTGACT
66 CAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGCTAGTGACT
23875287 TAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
131 TAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
* *
23875334 GATCTGCTTCACTGCAACCTCAGGAAGCCAAGATTCA
1 AATCTGCTTCACTGCAACCTCAGGAAGTCAAGATTCA
23875371 CCGATATTGC
Statistics
Matches: 201, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
177 201 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (177 bp):
AATCTGCTTCACTGCAACCTCAGGAAGTCAAGATTCATCATCTTTGATCTACTCCACTGTAACTT
CAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGCTAGTGACT
TAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
Found at i:23875310 original size:264 final size:261
Alignment explanation
Indices: 23874700--23875312 Score: 617
Period size: 264 Copynumber: 2.3 Consensus size: 261
23874690 TCCACTGGAG
** * * * *
23874700 ACGAGATCTGCAATTGTCAGCCTACTTCGCTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATC
1 ACGAGATCTAAAATT-TCAACCTACTTCACTACAACTTTAGGGAGCTAGGATAGTGACTTAAATC
*
23874765 TGC-TCTACTACAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGG
65 TGCTTC-ACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGG
* * **
23874829 GAGCTAGGTTAGTAACTTAAATCTGCTTTACTGCAACTTCAGGAAGTCAAGATTCCTTGTCTTTG
129 GAGCTAGGTTAGTAACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCCTCGTCTTCA
* * * *
23874894 ATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATGTCAACCTACTCCACTACAACTTTA
194 ATCTGCTCCACTGAAACCTCAGGGAAACAAGATCT-AAATGTCAACCTACTCCACTACAACTTCA
23874959 GGGA
258 GGGA
* * * ** * * * * * * * * * * **
23874963 GCTAGGT-TAGTGACTTAAATCTGCTTCACTGCAACTTCA-GGAGGTCAAGATTCGTCATCTTTG
1 ACGAGATCTA-AAATTTCAACCTACTTCACTACAACTTTAGGGAGCT-AGGA-TAGTGA-CTTAA
* * * *
23875026 ATCTACTCCACTGTAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAATTTTA
62 ATCTGCTTCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTA
* * *
23875091 GGGAGTTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTT
127 GGGAGCTAGGTTAGTAACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCCTCGTCTT
* * * * ** * **
23875156 CAATCTGCTTCACTGAAACCTCA-GGAAGTCAAGAT-T-CATCGTCTTTGATTTGCTCCACTGTA
192 CAATCTGCTCCACTGAAACCTCAGGGAA-ACAAGATCTAAAT-GTC---AACCTACTCCACTACA
23875218 ACTTCAGGGAA
252 ACTTCAGGG-A
* *
23875229 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGCTAGTGACTTAAATCT
1 ACGAGATCTAAAATTTCAACCTACTTCACTACAACTTTAGGGAGCTAGGATAGTGACTTAAATCT
23875294 GCTTCACTGCAACTTCAGG
66 GCTTCACTGCAACTTCAGG
23875313 AAGTCAAGAT
Statistics
Matches: 269, Mismatches: 68, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
261 7 0.03
262 24 0.09
263 14 0.05
264 167 0.62
265 23 0.09
266 27 0.10
267 7 0.03
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (261 bp):
ACGAGATCTAAAATTTCAACCTACTTCACTACAACTTTAGGGAGCTAGGATAGTGACTTAAATCT
GCTTCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGA
GCTAGGTTAGTAACTTAAATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCCTCGTCTTCAAT
CTGCTCCACTGAAACCTCAGGGAAACAAGATCTAAATGTCAACCTACTCCACTACAACTTCAGGG
A
Found at i:23887328 original size:130 final size:130
Alignment explanation
Indices: 23887119--23887471 Score: 377
Period size: 130 Copynumber: 2.7 Consensus size: 130
23887109 TTGCCCTCGT
* * * * * *
23887119 TTTAAAGGATTTTTAGAAGAGC-CGAGTGAAATTTTGAAGGGATATTTGATTGTTTTAAAC-AAT
1 TTTAAGGGA-TTTTAAAAGA-CACGAGTGAAATTTTAAAGGGATATTCGATTATTTTAAGCAAAT
* * * * * * *
23887182 CGAGAAATTGCTACCCAACACGTTAAGGCACGATCCCACGAACTGCCAAATACCAGATATCGCCT
64 -GCGAAATTGCAACCCAACACGTTAGGGCACGATCCCACGAACTGCAAAACACCAAATATCACCT
*
23887247 TTG
128 TCG
* * * *
23887250 TTTCAGGGATTTTAAAAGACACGAGCGAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATGC
1 TTTAAGGGATTTTAAAAGACACGAGTGAAATTTTAAAGGGATATTCGATTATTTTAAGCAAATGC
** * * *
23887315 GAAATTGCAACCCAACACGTTAGGGCACGATTTCACGAATTGCAAAACATCAAATCTCACCTTCG
66 GAAATTGCAACCCAACACGTTAGGGCACGATCCCACGAACTGCAAAACACCAAATATCACCTTCG
*** * * * * * *
23887380 TTTAAGGGATTTTAAAAGATGTGAATGGAATTTAAAAGGGAAATTCAATTATTTTTAGCAAATGC
1 TTTAAGGGATTTTAAAAGACACGAGTGAAATTTTAAAGGGATATTCGATTATTTTAAGCAAATGC
23887445 GAAATTGCAACCCAACACGTTAGGGCA
66 GAAATTGCAACCCAACACGTTAGGGCA
23887472 TGATTCTGCG
Statistics
Matches: 185, Mismatches: 35, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
129 1 0.01
130 174 0.94
131 10 0.05
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (130 bp):
TTTAAGGGATTTTAAAAGACACGAGTGAAATTTTAAAGGGATATTCGATTATTTTAAGCAAATGC
GAAATTGCAACCCAACACGTTAGGGCACGATCCCACGAACTGCAAAACACCAAATATCACCTTCG
Found at i:23887487 original size:130 final size:130
Alignment explanation
Indices: 23887185--23887512 Score: 370
Period size: 130 Copynumber: 2.5 Consensus size: 130
23887175 AAACAATCGA
* * ** * * * * * * * *
23887185 GAAATTGCTACCCAACACGTTAAGGCACGATCCCACGAACTGCCAAATACCAGATATCGCCTTTG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTTCACGAATTGCAAAACATCAAATCTCACCTTCG
* *** ** * * * * *
23887250 TTTCAGGGATTTTAAAAGACACGAGCGAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATGC
66 TTTAAGGGATTTTAAAAGATGTGAATGGAATTTAAAAGGGAAATTCAATTATTTTGAGCAAATGC
23887315 GAAATTGCAACCCAACACGTTAGGGCACGATTTCACGAATTGCAAAACATCAAATCTCACCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTTCACGAATTGCAAAACATCAAATCTCACCTTCG
*
23887380 TTTAAGGGATTTTAAAAGATGTGAATGGAATTTAAAAGGGAAATTCAATTATTTTTAGCAAATGC
66 TTTAAGGGATTTTAAAAGATGTGAATGGAATTTAAAAGGGAAATTCAATTATTTTGAGCAAATGC
* * ** * *
23887445 GAAATTGCAACCCAACACGTTAGGGCATGA-TTCTGCGAATTGCCGAACATCAAATTTCATCTTC
1 GAAATTGCAACCCAACACGTTAGGGCACGATTTC-ACGAATTGCAAAACATCAAATCTCACCTTC
23887509 GTTT
65 GTTT
23887513 TGAAGAATTT
Statistics
Matches: 167, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
129 3 0.02
130 164 0.98
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (130 bp):
GAAATTGCAACCCAACACGTTAGGGCACGATTTCACGAATTGCAAAACATCAAATCTCACCTTCG
TTTAAGGGATTTTAAAAGATGTGAATGGAATTTAAAAGGGAAATTCAATTATTTTGAGCAAATGC
Found at i:23904589 original size:52 final size:52
Alignment explanation
Indices: 23904519--23904670 Score: 162
Period size: 52 Copynumber: 2.9 Consensus size: 52
23904509 GACGGAAAAG
**
23904519 ATGTGATATGTGCACCCGTATAAGACCATAGCTGGGCTATGGCATTGATGCA
1 ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATTGATGCA
* * * * * * * **
23904571 ATGTGATACGTGTTCCCGTATAAAACCATAGCTGAGCTATGACGTCGGTGTG
1 ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATTGATGCA
* *
23904623 ATGTGATAATGTGATT-CCGTATAAGACCATATCTGGGATATGGCATTG
1 ATGTGAT-ATGTG-TTCCCGTATAAGACCATAGCTGGGCTATGGCATTG
23904671 GTATTACATG
Statistics
Matches: 79, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
52 48 0.61
53 29 0.37
54 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (52 bp):
ATGTGATATGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATTGATGCA
Found at i:23906956 original size:3 final size:3
Alignment explanation
Indices: 23906948--23907002 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
23906938 ACTTGTGCCT
23906948 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23906996 TTA TTA T
1 TTA TTA T
23907003 CACTCGTTCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23907104 original size:26 final size:26
Alignment explanation
Indices: 23907075--23907127 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23907065 TTGTCATTCC
* *
23907075 TATTATTAT-ATGGTTATCATTATTAT
1 TATTATTATCATCGTCA-CATTATTAT
23907101 TATTATTATCATCGTCACATTATTAT
1 TATTATTATCATCGTCACATTATTAT
23907127 T
1 T
23907128 CTTTACATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (26 bp):
TATTATTATCATCGTCACATTATTAT
Found at i:23908068 original size:22 final size:22
Alignment explanation
Indices: 23908018--23908068 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
23908008 AAAATTCGTA
23908018 GACCAAAATCATTGTTTTAAAT
1 GACCAAAATCATTGTTTTAAAT
* *
23908040 AATCAAAAT-ATT-TTATTAAAAT
1 GACCAAAATCATTGTT-TT-AAAT
23908062 GACCAAA
1 GACCAAA
23908069 TTTCTAGGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
20 2 0.09
21 5 0.22
22 16 0.70
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.33
Consensus pattern (22 bp):
GACCAAAATCATTGTTTTAAAT
Found at i:23915816 original size:38 final size:38
Alignment explanation
Indices: 23915765--23915846 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
23915755 ACATATTGAT
23915765 ACATGTAACGTGGTGCTAAGTGGATATACCACAGTTAA
1 ACATGTAACGTGGTGCTAAGTGGATATACCACAGTTAA
* *
23915803 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTAT
1 ACATGTAACGTGGTGCTAAGTGGATATACCACAGTTAA
23915841 ACATGT
1 ACATGT
23915847 TAATTAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (38 bp):
ACATGTAACGTGGTGCTAAGTGGATATACCACAGTTAA
Found at i:23917030 original size:72 final size:72
Alignment explanation
Indices: 23916895--23917078 Score: 205
Period size: 72 Copynumber: 2.6 Consensus size: 72
23916885 ATTGATCGGT
* * *
23916895 TATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA-TATTCAGTAACAATTAAGTTATTTAGTA
1 TATCCAGTAACAATCAGTTATTCAGTAATAATCA-ATTATTCAGTAACAATTAAGTTATTCAGTA
23916958 ACAGTCAT-
65 ACAGT-ATA
* * * * *
23916966 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAA-TATTCAGTTATTCAGTA
1 T-ATCCAGTAACAATCAGTTATTCAGTAATAATCAATTATTCAGTAACAATTAAGTTATTCAGTA
23917030 ACAGTATAA
65 ACAGTAT-A
* * *
23917039 TATCCAGTAACAGTCATTTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAGTTATTCAGTAATAATCAATTATT
23917079 TATTATCTTT
Statistics
Matches: 94, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
71 3 0.03
72 76 0.81
73 15 0.16
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.36
Consensus pattern (72 bp):
TATCCAGTAACAATCAGTTATTCAGTAATAATCAATTATTCAGTAACAATTAAGTTATTCAGTAA
CAGTATA
Found at i:23917077 original size:18 final size:18
Alignment explanation
Indices: 23916801--23917078 Score: 152
Period size: 18 Copynumber: 15.1 Consensus size: 18
23916791 TCATTAATTC
* *
23916801 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
* *
23916818 TCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
* * **
23916836 GCGGTAACAATCAAATAT
1 TCAGTAACAATCAGTTAT
* *
23916854 TCAGTAATAACCAGTTAT
1 TCAGTAACAATCAGTTAT
*
23916872 TCAGTATCGATCAATTGATCGGTTAT
1 TCAGTA---A-C-A---ATCAGTTAT
* * *
23916898 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
*
23916916 TCAGTAA-AATCAGATAT
1 TCAGTAACAATCAGTTAT
*
23916933 TCAGTAACAATTAAGTTAT
1 TCAGTAACAA-TCAGTTAT
* *
23916952 TTAGTAACAGTCA-TTCAT
1 TCAGTAACAATCAGTT-AT
*
23916970 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAGTTAT
** *
23916988 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAGTTAT
* *
23917006 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAGTTAT
*
23917024 TCAGTAACAGTAT-A-ATAT
1 TCAGTAACA--ATCAGTTAT
* * *
23917042 CCAGTAACAGTCATTTAT
1 TCAGTAACAATCAGTTAT
*
23917060 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAGTTAT
23917078 T
1 T
23917079 TATTATCTTT
Statistics
Matches: 195, Mismatches: 49, Indels: 33
0.70 0.18 0.12
Matches are distributed among these distances:
16 1 0.01
17 21 0.11
18 138 0.71
19 17 0.09
20 1 0.01
21 2 0.01
22 1 0.01
23 2 0.01
26 12 0.06
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Found at i:23917245 original size:42 final size:43
Alignment explanation
Indices: 23917196--23917301 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 43
23917186 CCTGATCAAT
*
23917196 ATACGACACATAAAGTGTCTAAAACGACACACGAGGTGCCTG-
1 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGA
** * * *
23917238 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG-A
23917282 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
23917302 GACCAATAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 36 0.68
44 17 0.32
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (43 bp):
ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTGA
Found at i:23917248 original size:23 final size:21
Alignment explanation
Indices: 23917219--23917291 Score: 128
Period size: 21 Copynumber: 3.4 Consensus size: 21
23917209 AGTGTCTAAA
23917219 ACGACACACGAGGTGCCTGAT
1 ACGACACACGAGGTGCCTGAT
23917240 ACGACACACGAGGTGCCTGAT
1 ACGACACACGAGGTGCCTGAT
23917261 ACGACACACGAGGTGCCTGAAAT
1 ACGACACACGAGGTGCCTG--AT
23917284 ACGACACA
1 ACGACACA
23917292 TAAAGTGCCT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
21 40 0.80
23 10 0.20
ACGTcount: A:0.33, C:0.29, G:0.26, T:0.12
Consensus pattern (21 bp):
ACGACACACGAGGTGCCTGAT
Found at i:23917700 original size:15 final size:15
Alignment explanation
Indices: 23917680--23917730 Score: 84
Period size: 15 Copynumber: 3.4 Consensus size: 15
23917670 TATATTATAT
23917680 AATTCAATCAAAATA
1 AATTCAATCAAAATA
23917695 AATTCAATCAAAATA
1 AATTCAATCAAAATA
* *
23917710 ATTTCAATCAATATA
1 AATTCAATCAAAATA
23917725 AATTCA
1 AATTCA
23917731 TCGCATATCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
AATTCAATCAAAATA
Found at i:23919685 original size:25 final size:26
Alignment explanation
Indices: 23919642--23919690 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
23919632 ACAAGAACTC
23919642 AATTTCTTTTTCAACCTG-ATCTTCA
1 AATTTCTTTTTCAACCTGAATCTTCA
*
23919667 AATTTTTTTTTCAGA-CTGAATCTT
1 AATTTCTTTTTCA-ACCTGAATCTT
23919691 TAAGAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.24, C:0.18, G:0.06, T:0.51
Consensus pattern (26 bp):
AATTTCTTTTTCAACCTGAATCTTCA
Found at i:23923140 original size:72 final size:73
Alignment explanation
Indices: 23923005--23923188 Score: 214
Period size: 72 Copynumber: 2.5 Consensus size: 73
23922995 ATTGATCGGT
* * *
23923005 TATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA-TATTCAGTAACAATTAAGTTATTTAGTA
1 TATCCAGTAACAATCAGTTATTCAGTAATAATCA-ATTATTCAGTAACAATTAAGTTATTCAGTA
*
23923068 ACAGTC-AT
65 ACAGTCTAA
* * * * *
23923076 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAA-TATTCAGTTATTCAGTA
1 T-ATCCAGTAACAATCAGTTATTCAGTAATAATCAATTATTCAGTAACAATTAAGTTATTCAGTA
23923140 ACAGTCTAA
65 ACAGTCTAA
* * *
23923149 TATCCAGTAACAGTCATTTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAGTTATTCAGTAATAATCAATTATT
23923189 TATTATCTTT
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
71 1 0.01
72 77 0.82
73 16 0.17
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (73 bp):
TATCCAGTAACAATCAGTTATTCAGTAATAATCAATTATTCAGTAACAATTAAGTTATTCAGTAA
CAGTCTAA
Found at i:23923187 original size:18 final size:18
Alignment explanation
Indices: 23922911--23923188 Score: 159
Period size: 18 Copynumber: 15.1 Consensus size: 18
23922901 TCATTAATTC
* *
23922911 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
* *
23922928 TCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
* * **
23922946 GCGGTAACAATCAAATAT
1 TCAGTAACAATCAGTTAT
* *
23922964 TCAGTAATAACCAGTTAT
1 TCAGTAACAATCAGTTAT
*
23922982 TCAGTATCGATCAATTGATCGGTTAT
1 TCAGTA---A-C-A---ATCAGTTAT
* * *
23923008 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
*
23923026 TCAGTAA-AATCAGATAT
1 TCAGTAACAATCAGTTAT
*
23923043 TCAGTAACAATTAAGTTAT
1 TCAGTAACAA-TCAGTTAT
* *
23923062 TTAGTAACAGTCA-TTCAT
1 TCAGTAACAATCAGTT-AT
*
23923080 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAGTTAT
** *
23923098 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAGTTAT
* *
23923116 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
23923134 TCAGTAACAGTCTA-ATAT
1 TCAGTAACAATC-AGTTAT
* * *
23923152 CCAGTAACAGTCATTTAT
1 TCAGTAACAATCAGTTAT
*
23923170 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAGTTAT
23923188 T
1 T
23923189 TATTATCTTT
Statistics
Matches: 198, Mismatches: 48, Indels: 29
0.72 0.17 0.11
Matches are distributed among these distances:
17 21 0.11
18 143 0.72
19 17 0.09
21 2 0.01
22 1 0.01
23 2 0.01
26 12 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Found at i:23923354 original size:42 final size:43
Alignment explanation
Indices: 23923306--23923411 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
23923296 CCTGATCAAT
*
23923306 ATACGACACATAAAGTGTCTAAAACAACACACGAGGTGCCTG-
1 ATACGACACATAAAGTGCCTAAAACAACACACGAGGTGCCTGA
** * * * *
23923348 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTAAAACAACACACGAGGTGCCTG-A
23923392 ATACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
23923412 GACCAATAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 35 0.67
44 17 0.33
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (43 bp):
ATACGACACATAAAGTGCCTAAAACAACACACGAGGTGCCTGA
Found at i:23923358 original size:23 final size:21
Alignment explanation
Indices: 23923332--23923401 Score: 122
Period size: 21 Copynumber: 3.2 Consensus size: 21
23923322 GTCTAAAACA
23923332 ACACACGAGGTGCCTGATACG
1 ACACACGAGGTGCCTGATACG
23923353 ACACACGAGGTGCCTGATACG
1 ACACACGAGGTGCCTGATACG
23923374 ACACACGAGGTGCCTGAAATACG
1 ACACACGAGGTGCCTG--ATACG
23923397 ACACA
1 ACACA
23923402 TAAAGTGCCT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
21 37 0.79
23 10 0.21
ACGTcount: A:0.33, C:0.29, G:0.26, T:0.13
Consensus pattern (21 bp):
ACACACGAGGTGCCTGATACG
Found at i:23923810 original size:15 final size:15
Alignment explanation
Indices: 23923790--23923840 Score: 84
Period size: 15 Copynumber: 3.4 Consensus size: 15
23923780 TATATTATAT
23923790 AATTCAATCAAAATA
1 AATTCAATCAAAATA
23923805 AATTCAATCAAAATA
1 AATTCAATCAAAATA
* *
23923820 ATTTCAATCAATATA
1 AATTCAATCAAAATA
23923835 AATTCA
1 AATTCA
23923841 TCGCATATCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
AATTCAATCAAAATA
Found at i:23928973 original size:27 final size:27
Alignment explanation
Indices: 23928905--23928985 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
23928895 CTATTTTGCA
* *
23928905 AAATTTAAATTCCTAATTATCTTATCT
1 AAATTTAAACTCCTAATTATCTAATCT
*
23928932 AAATTAAAACT-CTAATTATCCTAAT-T
1 AAATTTAAACTCCTAATTAT-CTAATCT
** *
23928958 TGATTTAAACTCCTAATTATTTAATCT
1 AAATTTAAACTCCTAATTATCTAATCT
23928985 A
1 A
23928986 CATAAAATCT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
26 21 0.49
27 22 0.51
ACGTcount: A:0.40, C:0.15, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATTTAAACTCCTAATTATCTAATCT
Found at i:23928982 original size:26 final size:28
Alignment explanation
Indices: 23928905--23928985 Score: 89
Period size: 26 Copynumber: 3.0 Consensus size: 28
23928895 CTATTTTGCA
*
23928905 AAATTTAAATTCCTAATTATCTT-ATCT
1 AAATTTAAACTCCTAATTATCTTAATCT
* *
23928932 AAATTAAAACT-CTAATTATCCTAAT-T
1 AAATTTAAACTCCTAATTATCTTAATCT
**
23928958 TGATTTAAACTCCTAATTAT-TTAATCT
1 AAATTTAAACTCCTAATTATCTTAATCT
23928985 A
1 A
23928986 CATAAAATCT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
26 23 0.53
27 20 0.47
ACGTcount: A:0.40, C:0.15, G:0.01, T:0.44
Consensus pattern (28 bp):
AAATTTAAACTCCTAATTATCTTAATCT
Found at i:23932162 original size:17 final size:17
Alignment explanation
Indices: 23932140--23932174 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23932130 GGTTCAATCG
*
23932140 ATTTCCAATGCAATTCA
1 ATTTCCAATCCAATTCA
23932157 ATTTCCAATCCAATTCA
1 ATTTCCAATCCAATTCA
23932174 A
1 A
23932175 ATATGATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (17 bp):
ATTTCCAATCCAATTCA
Found at i:23936739 original size:6 final size:6
Alignment explanation
Indices: 23936732--23936765 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
23936722 GACAGGGAGT
* *
23936732 ATGAGT ATGAGT ATGAGC ATGAGC ATGAGC ATGA
1 ATGAGC ATGAGC ATGAGC ATGAGC ATGAGC ATGA
23936766 AAGAAAGGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (6 bp):
ATGAGC
Found at i:23936745 original size:12 final size:12
Alignment explanation
Indices: 23936728--23936765 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
23936718 GTTTGACAGG
*
23936728 GAGTATGAGTAT
1 GAGTATGAGCAT
23936740 GAGTATGAGCAT
1 GAGTATGAGCAT
*
23936752 GAGCATGAGCAT
1 GAGTATGAGCAT
23936764 GA
1 GA
23936766 AAGAAAGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.34, C:0.08, G:0.34, T:0.24
Consensus pattern (12 bp):
GAGTATGAGCAT
Found at i:23940423 original size:14 final size:14
Alignment explanation
Indices: 23940404--23940439 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
23940394 CTTAAATTTT
23940404 TTGTTATTATATTG
1 TTGTTATTATATTG
*
23940418 TTGTTATTTTATTG
1 TTGTTATTATATTG
*
23940432 TTATTATT
1 TTGTTATT
23940440 TGGATATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.69
Consensus pattern (14 bp):
TTGTTATTATATTG
Done.