Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 88 of 328
Found at i:24613071 original size:8 final size:8
Alignment explanation
Indices: 24613058--24613087 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
24613048 AATTAAGGGA
24613058 AAAATTGC
1 AAAATTGC
24613066 AAAATTGC
1 AAAATTGC
24613074 AAAATTGC
1 AAAATTGC
24613082 AAAATT
1 AAAATT
24613088 TACTTAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.53, C:0.10, G:0.10, T:0.27
Consensus pattern (8 bp):
AAAATTGC
Found at i:24613538 original size:16 final size:17
Alignment explanation
Indices: 24613517--24613550 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24613507 AATGTCTAGT
24613517 AAAATTA-TTAATTGAG
1 AAAATTACTTAATTGAG
24613533 AAAATTATCTTAATTGAG
1 AAAATTA-CTTAATTGAG
24613551 GGGTTAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (17 bp):
AAAATTACTTAATTGAG
Found at i:24614667 original size:13 final size:13
Alignment explanation
Indices: 24614649--24614675 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24614639 CTTCGGCCAC
24614649 ACTTATCTGATCA
1 ACTTATCTGATCA
24614662 ACTTATCTGATCA
1 ACTTATCTGATCA
24614675 A
1 A
24614676 GGACAAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (13 bp):
ACTTATCTGATCA
Found at i:24614720 original size:50 final size:51
Alignment explanation
Indices: 24614662--24614762 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 51
24614652 TATCTGATCA
* *
24614662 ACTTATCTGATCAAGGACAAGTGA-AAGTGATAAGTGATAGCTTCGACTAC
1 ACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTCGACTAC
* * *
24614712 ACTTATCTGATCAATGACAAATGACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTCGACTAC
24614763 TTGATAAGTG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 22 0.49
51 23 0.51
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (51 bp):
ACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTCGACTAC
Found at i:24614775 original size:31 final size:31
Alignment explanation
Indices: 24614738--24614886 Score: 210
Period size: 31 Copynumber: 4.8 Consensus size: 31
24614728 ACAAATGACA
* *
24614738 AGTGAAAAGTGGTAGCTTCGGCTACTTGATA
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
24614769 AGTGAAAAGTCGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
24614800 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
24614831 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
24614862 AGTGAATAA-TGGTAGCTTTGGCTAC
1 AGTGAA-AAGTGGTAGCTTCGGCTAC
24614887 AAGTGACAAG
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
31 105 0.98
32 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:24614981 original size:47 final size:46
Alignment explanation
Indices: 24614911--24615124 Score: 166
Period size: 47 Copynumber: 4.7 Consensus size: 46
24614901 AAGTGATTTC
* * * * *
24614911 CGTATAAGACCATATCTAGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATAGCTGGGATATGACATCGGTGTGATATGTGATA
* * * *
24614957 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATT
1 C-GTATAAGACCATAGCTGGGATATGACATCGGTGTGATATGTGATA
** * *
24615004 CGTGCAAGACCATAGCTGGGCTATGACATCGATATGTGATATGTGATTA
1 CGTATAAGACCATAGCTGGGATATGACATCG--GTGTGATATGTGA-TA
* * * * *
24615053 CGTGTAAGACCATAGCTGGGCTATGGCATC-G-AT-ATATG-AATA
1 CGTATAAGACCATAGCTGGGATATGACATCGGTGTGATATGTGATA
* * * *
24615095 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATAGCTGGGATATGACATC
24615125 ATTATGTGAA
Statistics
Matches: 143, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.22
43 1 0.01
44 5 0.03
45 1 0.01
46 26 0.18
47 39 0.27
48 11 0.08
49 29 0.20
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATAGCTGGGATATGACATCGGTGTGATATGTGATA
Found at i:24615069 original size:49 final size:47
Alignment explanation
Indices: 24614962--24615133 Score: 187
Period size: 49 Copynumber: 3.7 Consensus size: 47
24614952 TGCTACTGTA
* * * *
24614962 TAAGACCATATCTGGGATATGACATCA-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGACATCATATGTGATATGTGATTCGTG
*
24615008 CAAGACCATAGCTGGGCTATGACATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGACATC-ATATGTGATATGTGATT-CGTG
* *
24615057 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGACATC-ATATGTGATATGTGATTCGTG
*
24615099 TAAGACCATAGCTGGGCTATGGCATCATTATGTGA
1 TAAGACCATAGCTGGGCTATGACATCA-TATGTGA
24615134 AGATGTGTAA
Statistics
Matches: 113, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
41 1 0.01
42 35 0.31
44 1 0.01
45 1 0.01
46 24 0.21
47 1 0.01
48 14 0.12
49 36 0.32
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGACATCATATGTGATATGTGATTCGTG
Found at i:24615100 original size:42 final size:43
Alignment explanation
Indices: 24615009--24615168 Score: 173
Period size: 42 Copynumber: 3.6 Consensus size: 43
24614999 TGATTCGTGC
* *
24615009 AAGACCATAGCTGGGCTATGACATCGATATGTGATATG-TGATTACGTGT
1 AAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T--GTGT
*
24615058 AAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATGTGT
*
24615100 AAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATGTGT
* **
24615142 AAGACCATAGTTGAACTATGGCATCGA
1 AAGACCATAGCTGGGCTATGGCATCGA
24615169 GAAAACGAAG
Statistics
Matches: 100, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 64 0.64
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 25 0.25
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
AAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATGTGT
Found at i:24616873 original size:14 final size:14
Alignment explanation
Indices: 24616854--24616882 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24616844 ATATCACATA
24616854 AATTTATTAATATT
1 AATTTATTAATATT
24616868 AATTTATTAATATT
1 AATTTATTAATATT
24616882 A
1 A
24616883 TATATGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTTATTAATATT
Found at i:24617672 original size:17 final size:18
Alignment explanation
Indices: 24617635--24617673 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24617625 TTCCCTTCTA
*
24617635 ATTTCTCACTCAAATTTT
1 ATTTCTCACTCAAACTTT
*
24617653 ATTTCTCTCTC-AACTTT
1 ATTTCTCACTCAAACTTT
24617670 ATTT
1 ATTT
24617674 TTTATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTCTCACTCAAACTTT
Found at i:24618072 original size:23 final size:21
Alignment explanation
Indices: 24618022--24618072 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 21
24618012 AACTTTACAT
24618022 CTCAAAAAATTATAAAAAAAC
1 CTCAAAAAATTATAAAAAAAC
* *
24618043 TTAAAAAAATATAATAAAAAAAC
1 CTCAAAAAAT-T-ATAAAAAAAC
24618066 CTCAAAA
1 CTCAAAA
24618073 CCCTACACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 8 0.33
22 1 0.04
23 15 0.62
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.20
Consensus pattern (21 bp):
CTCAAAAAATTATAAAAAAAC
Found at i:24618358 original size:88 final size:90
Alignment explanation
Indices: 24618233--24618409 Score: 247
Period size: 88 Copynumber: 2.0 Consensus size: 90
24618223 GCTATAAGCA
24618233 TTTTCGTTATTTTGGCCCAATCCCATAATTTTAC-AAAAAAAA-C-AGCCTAATCCAGTAATTAT
1 TTTTCGTTATTTTGGCCCAA-CCCATAATTTTACAAAAAAAAACCAAG-CTAATCCAGTAATTAT
* *
24618295 TTT-AAAAATCGAGATTTTTTATAACG
64 TTTAAAAAATCAAGATTTTTCATAACG
* *
24618321 TTTTTGTTATTTTGGCCCAA-CCATGTAATTTTACAAAAAAAAACCAAGCTAATCCAGTTATTAT
1 TTTTCGTTATTTTGGCCCAACCCA--TAATTTTACAAAAAAAAACCAAGCTAATCCAGTAATTAT
24618385 TTTAAAAAATCAAGATTTTTCATAA
64 TTTAAAAAATCAAGATTTTTCATAA
24618410 ATTAACTCGC
Statistics
Matches: 79, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
86 3 0.04
88 28 0.35
89 8 0.10
90 19 0.24
91 21 0.27
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (90 bp):
TTTTCGTTATTTTGGCCCAACCCATAATTTTACAAAAAAAAACCAAGCTAATCCAGTAATTATTT
TAAAAAATCAAGATTTTTCATAACG
Found at i:24619976 original size:32 final size:31
Alignment explanation
Indices: 24619938--24620010 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 31
24619928 TTTTACATTG
* *
24619938 TATATATTTTGAA-TTTGTATATACATACATA
1 TATATATTTTAAACTAT-TATATACATACATA
* *
24619969 TATTATATTTTAAACTATTATATATATATATA
1 TA-TATATTTTAAACTATTATATACATACATA
24620001 TATATATTTT
1 TATATATTTT
24620011 TGTCTACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
31 10 0.28
32 24 0.67
33 2 0.06
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.53
Consensus pattern (31 bp):
TATATATTTTAAACTATTATATACATACATA
Found at i:24620259 original size:20 final size:21
Alignment explanation
Indices: 24620234--24620304 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 21
24620224 ATTATTACTT
24620234 TTATTCTT-TATTCACTATTA
1 TTATTCTTATATTCACTATTA
* *
24620254 TTATTCTTACTAATGCATTATTA
1 TTATTCTTA-T-ATTCACTATTA
24620277 TTATTCTTATATTCTACTTCATTA
1 TTATTCTTATATTC-AC-T-ATTA
24620301 TTAT
1 TTAT
24620305 ATTATTACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
20 8 0.20
21 3 0.07
22 3 0.07
23 19 0.46
24 8 0.20
ACGTcount: A:0.27, C:0.14, G:0.01, T:0.58
Consensus pattern (21 bp):
TTATTCTTATATTCACTATTA
Found at i:24620403 original size:3 final size:3
Alignment explanation
Indices: 24620395--24620461 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
24620385 ATATATTTAC
24620395 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
24620443 ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT A
24620462 CTATATCTTC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:24624302 original size:21 final size:20
Alignment explanation
Indices: 24624277--24624322 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
24624267 TGCATCAAAT
24624277 ATAATCATTAATAAATAAAAA
1 ATAATCATTAATAAA-AAAAA
* *
24624298 ATAATCCTTAATAAAAACAA
1 ATAATCATTAATAAAAAAAA
24624318 ATAAT
1 ATAAT
24624323 TACTATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAATCATTAATAAAAAAAA
Found at i:24631053 original size:107 final size:107
Alignment explanation
Indices: 24630942--24631263 Score: 583
Period size: 107 Copynumber: 3.0 Consensus size: 107
24630932 AAAAAACAAG
24630942 TCAAAAATTTTATCAGAGTAATTAAC-AAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
1 TCAAAAATTTTAT-AGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
24631006 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
65 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
* *
24631049 TCAAAAATTTTATAGAGTAATTAACAAAAAATTTAATATAATTTTGTTAGAAATTTTATTATTTA
1 TCAAAAATTTTATAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTA
24631114 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
*
24631156 TCAAAAATTTTATAGAGTAATTAACAAAAATTTTAATACAAGTTTGTTAGAAATTTTATTATTTA
1 TCAAAAATTTTATAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTA
* *
24631221 AAACTTATTCTAACTTAACATATCATTATTTTGTTAAACTAA
66 AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
24631263 T
1 T
24631264 TTTTTGTTTA
Statistics
Matches: 207, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
106 12 0.06
107 195 0.94
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.43
Consensus pattern (107 bp):
TCAAAAATTTTATAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTTA
AAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
Found at i:24631869 original size:22 final size:22
Alignment explanation
Indices: 24631842--24631893 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
24631832 GCTCTAATAG
*
24631842 TTTTATTTATTATTG-CATTTAT
1 TTTTATTTATTATAGTC-TTTAT
24631864 TTTTATTTATTATAGTCTTTAT
1 TTTTATTTATTATAGTCTTTAT
*
24631886 TTTAATTT
1 TTTTATTT
24631894 TTTTATTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTTATTTATTATAGTCTTTAT
Found at i:24632606 original size:16 final size:16
Alignment explanation
Indices: 24632593--24632635 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
24632583 TAATTACAGT
24632593 TCTATTCCATTACAAC
1 TCTATTCCATTACAAC
24632609 TCTATTCCATTACAAC
1 TCTATTCCATTACAAC
* *
24632625 TTTATTTCATT
1 TCTATTCCATT
24632636 CCTCCCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.47
Consensus pattern (16 bp):
TCTATTCCATTACAAC
Found at i:24633573 original size:15 final size:15
Alignment explanation
Indices: 24633553--24633631 Score: 56
Period size: 14 Copynumber: 5.1 Consensus size: 15
24633543 ACTACAAAAC
24633553 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
24633568 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
24633587 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
*
24633602 A-TTAATATTAA-AT
1 ATTTATTATTAATAT
*
24633615 ATTT-TTCAATAATAT
1 ATTTATT-ATTAATAT
24633630 AT
1 AT
24633632 GAAGAATATT
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
13 4 0.08
14 15 0.29
15 14 0.27
16 1 0.02
17 7 0.14
18 1 0.02
19 9 0.18
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:24634486 original size:20 final size:22
Alignment explanation
Indices: 24634449--24634489 Score: 59
Period size: 20 Copynumber: 1.9 Consensus size: 22
24634439 AAATGTAACA
24634449 ATTTAAATAAAACCTCATTAATC
1 ATTTAAATAAAA-CTCATTAATC
24634472 ATTTAAA-AAAA-TCATTAA
1 ATTTAAATAAAACTCATTAA
24634490 ATCAATTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
22 4 0.22
23 7 0.39
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (22 bp):
ATTTAAATAAAACTCATTAATC
Found at i:24636603 original size:133 final size:131
Alignment explanation
Indices: 24636397--24636739 Score: 518
Period size: 133 Copynumber: 2.6 Consensus size: 131
24636387 AAAAAAAAAA
* * * * * *
24636397 GATATTTCATATTTTAGTCGAAAAAAAAAACGAAACCTAGCACGATTGGGCACGATTTTTCAAAC
1 GATATTCCGTATTTTGGTCGAAGAAAAAAACGAAACC-AGCACGATTGGGCACGATCTCTCAAAC
24636462 TCCCCAAATACGAAATATTGACTCATTTTATAATTTTTTAAAAAAAACATGGACGAAATTTCCAA
65 TCCCCAAATACGAAATATTGACTCATTTTATAATTTTTTAAAAAAAACATGGACGAAATTTCCAA
24636527 AG
130 AG
*
24636529 GATATTCCGTATTTTGGTCGAATGAAAAAAACAAAATCCAGCACGATTGGGCACGATCTCTCAAA
1 GATATTCCGTATTTTGGTCGAA-GAAAAAAACGAAA-CCAGCACGATTGGGCACGATCTCTCAAA
*
24636594 CTCCCCAAATACGAAATATTGACTCATTTTATAATTTTTTTAAAAAAACATGGACGAAATTTCCA
64 CTCCCCAAATACGAAATATTGACTCATTTTATAATTTTTTAAAAAAAACATGGACGAAATTTCCA
24636659 AAG
129 AAG
*
24636662 AATATTCCGTATTTTGGTC---G---AAAACGAAACCCAGCACGATTGGGCACGATCTCTCAAAC
1 GATATTCCGTATTTTGGTCGAAGAAAAAAACGAAA-CCAGCACGATTGGGCACGATCTCTCAAAC
*
24636721 TCCCCAAATACGAGATATT
65 TCCCCAAATACGAAATATT
24636740 TCCTTATGTT
Statistics
Matches: 197, Mismatches: 12, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
126 55 0.28
129 1 0.01
132 19 0.10
133 120 0.61
134 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.28
Consensus pattern (131 bp):
GATATTCCGTATTTTGGTCGAAGAAAAAAACGAAACCAGCACGATTGGGCACGATCTCTCAAACT
CCCCAAATACGAAATATTGACTCATTTTATAATTTTTTAAAAAAAACATGGACGAAATTTCCAAA
G
Found at i:24638095 original size:18 final size:18
Alignment explanation
Indices: 24638062--24638112 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
24638052 GTTTGCAAGG
24638062 AAAAGAAAGCAAGAAAAACA
1 AAAAGAAA--AAGAAAAACA
*
24638082 AAAAGAAAAAGAAATACA
1 AAAAGAAAAAGAAAAACA
* *
24638100 AAATGGAAAAGAA
1 AAAAGAAAAAGAA
24638113 TAAAGAACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 20 0.71
20 8 0.29
ACGTcount: A:0.75, C:0.06, G:0.16, T:0.04
Consensus pattern (18 bp):
AAAAGAAAAAGAAAAACA
Found at i:24646840 original size:2 final size:2
Alignment explanation
Indices: 24646833--24646880 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
24646823 TAATAATTAT
24646833 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24646875 TA TA TA
1 TA TA TA
24646881 GGAATAACGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24649593 original size:15 final size:15
Alignment explanation
Indices: 24649573--24649601 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
24649563 CTTTGTTTGA
24649573 CTATTTATTTATGTT
1 CTATTTATTTATGTT
24649588 CTATTTATTTATGT
1 CTATTTATTTATGT
24649602 GTAATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (15 bp):
CTATTTATTTATGTT
Found at i:24651484 original size:13 final size:13
Alignment explanation
Indices: 24651454--24651498 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
24651444 TTTCAAATTT
24651454 ACTTTTCTAATAAGC
1 ACTTTT-TAA-AAGC
* *
24651469 ACTTTTTCATAGC
1 ACTTTTTAAAAGC
24651482 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
24651495 ACTT
1 ACTT
24651499 CTCACTTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 18 0.69
14 2 0.08
15 6 0.23
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (13 bp):
ACTTTTTAAAAGC
Found at i:24652046 original size:21 final size:22
Alignment explanation
Indices: 24652022--24652069 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
24652012 AAAAAAATTT
* *
24652022 AAAAAATCA-ACAAATTTTAAA
1 AAAAAATCATAAAAATCTTAAA
*
24652043 AAAAAATCATAAAAATCTTATA
1 AAAAAATCATAAAAATCTTAAA
24652065 AAAAA
1 AAAAA
24652070 TTATTTATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (22 bp):
AAAAAATCATAAAAATCTTAAA
Found at i:24652070 original size:21 final size:21
Alignment explanation
Indices: 24652021--24652070 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
24652011 AAAAAAAATT
* *
24652021 TAAAAAATCAACAAATTTTAA
1 TAAAAAATCAAAAAATCTTAA
*
24652042 AAAAAAATCATAAAAATCTT-A
1 TAAAAAATCA-AAAAATCTTAA
24652063 TAAAAAAT
1 TAAAAAAT
24652071 TATTTATGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAAAAATCAAAAAATCTTAA
Found at i:24652186 original size:19 final size:19
Alignment explanation
Indices: 24652162--24652203 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
24652152 TTTTTTTATA
24652162 AAAAGAAAGTAATTTAACT
1 AAAAGAAAGTAATTTAACT
24652181 AAAAGAAAGTAATTTAACT
1 AAAAGAAAGTAATTTAACT
24652200 AAAA
1 AAAA
24652204 TTTAAAGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (19 bp):
AAAAGAAAGTAATTTAACT
Found at i:24652440 original size:2 final size:2
Alignment explanation
Indices: 24652433--24652457 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24652423 TTAGACACTG
24652433 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
24652458 TTGTGTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24652744 original size:27 final size:28
Alignment explanation
Indices: 24652707--24652760 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
24652697 TCATGATTTG
24652707 AATATTAATATTAATAAGAATATATTAT
1 AATATTAATATTAATAAGAATATATTAT
* * *
24652735 AATA-TAATATTATTAATAATTTATTA
1 AATATTAATATTAATAAGAATATATTA
24652761 CAGGTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (28 bp):
AATATTAATATTAATAAGAATATATTAT
Found at i:24653234 original size:36 final size:35
Alignment explanation
Indices: 24653174--24653258 Score: 88
Period size: 36 Copynumber: 2.5 Consensus size: 35
24653164 GATTTTGACA
* * *
24653174 ATTTTTAATAAATATT-TAGCTTTATAATTTCTTAAT
1 ATTTTTAATAATTATTATAGATTTAT-ATTT-TTAAC
*
24653210 ATTTTTAATAATTATTATA-ATTTATATTTTTACC
1 ATTTTTAATAATTATTATAGATTTATATTTTTAAC
24653244 A-TTTT-ATAATTATTA
1 ATTTTTAATAATTATTA
24653259 ATAGCTTTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
32 10 0.23
33 4 0.09
34 4 0.09
35 4 0.09
36 20 0.45
37 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (35 bp):
ATTTTTAATAATTATTATAGATTTATATTTTTAAC
Found at i:24663330 original size:35 final size:35
Alignment explanation
Indices: 24663290--24663361 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
24663280 AAAATTTTTA
*
24663290 ATAAAAAGGATTAATTGTTATTTGATCTAACATAT
1 ATAAAAAGGACTAATTGTTATTTGATCTAACATAT
24663325 ATAAAAAGGACTAATTGTTATTTGATCTAACATAT
1 ATAAAAAGGACTAATTGTTATTTGATCTAACATAT
24663360 AT
1 AT
24663362 GAATTAGTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (35 bp):
ATAAAAAGGACTAATTGTTATTTGATCTAACATAT
Found at i:24669879 original size:33 final size:34
Alignment explanation
Indices: 24669837--24669927 Score: 114
Period size: 34 Copynumber: 2.7 Consensus size: 34
24669827 GTATGCATTT
24669837 CTGATACTG-TACTGAAATGGGCTAA-AGCCCACA
1 CTGATACTGCTACTGAAATGGGCTAAGA-CCCACA
* * *
24669870 CTGATACTGTTACTGTATTGGGCTAAGACCCACA
1 CTGATACTGCTACTGAAATGGGCTAAGACCCACA
* *
24669904 CTGATATTGCGACTGAAATGGGCT
1 CTGATACTGCTACTGAAATGGGCT
24669928 TAGGCCCAGA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
33 9 0.18
34 39 0.80
35 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (34 bp):
CTGATACTGCTACTGAAATGGGCTAAGACCCACA
Found at i:24696132 original size:9 final size:10
Alignment explanation
Indices: 24696111--24696186 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 10
24696101 TTGAAGTAAT
24696111 ATAAAATATA
1 ATAAAATATA
24696121 ATAAAA-ATA
1 ATAAAATATA
*
24696130 ATATAATGAATA
1 ATAAAAT--ATA
*
24696142 ATATATATATA
1 ATA-AAATATA
*
24696153 GTAAAATGAT-
1 ATAAAAT-ATA
* *
24696163 ATAATATATT
1 ATAAAATATA
24696173 ATAAAATAT-
1 ATAAAATATA
24696182 ATAAA
1 ATAAA
24696187 TAAAATGTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
9 15 0.29
10 22 0.42
11 7 0.13
12 6 0.12
13 2 0.04
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (10 bp):
ATAAAATATA
Found at i:24696151 original size:18 final size:18
Alignment explanation
Indices: 24696088--24696152 Score: 50
Period size: 18 Copynumber: 3.8 Consensus size: 18
24696078 AAAATTATAC
* *
24696088 ATAATA-ATAAATATTGA
1 ATAATATATATATAATGA
*
24696105 AGTAATATAAAATATAAT-A
1 A-TAATAT-ATATATAATGA
24696124 A-AA-ATA-ATATAATGA
1 ATAATATATATATAATGA
24696139 ATAATATATATATA
1 ATAATATATATATA
24696153 GTAAAATGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 13
0.70 0.06 0.24
Matches are distributed among these distances:
14 7 0.18
15 3 0.08
16 4 0.11
17 6 0.16
18 10 0.26
19 2 0.05
20 6 0.16
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (18 bp):
ATAATATATATATAATGA
Found at i:24696167 original size:36 final size:32
Alignment explanation
Indices: 24696127--24696200 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 32
24696117 TATAATAAAA
* *
24696127 ATAATATAATGAATAATATATATATAGTAAAATGAT
1 ATAATAT-AT-AATAAAATATATA-AATAAAATG-T
*
24696163 ATAATATATTATAAAATATATAAATAAAATGT
1 ATAATATATAATAAAATATATAAATAAAATGT
24696195 ATAATA
1 ATAATA
24696201 ATGTAAATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 7 0.20
33 8 0.23
34 11 0.31
35 2 0.06
36 7 0.20
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.36
Consensus pattern (32 bp):
ATAATATATAATAAAATATATAAATAAAATGT
Found at i:24696171 original size:20 final size:19
Alignment explanation
Indices: 24696144--24696185 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
24696134 AATGAATAAT
24696144 ATATATATAGTAAAATGATATA
1 ATATAT-TA-TAAAAT-ATATA
24696166 ATATATTATAAAATATATA
1 ATATATTATAAAATATATA
24696185 A
1 A
24696186 ATAAAATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 6 0.30
21 2 0.10
22 6 0.30
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
ATATATTATAAAATATATA
Found at i:24698195 original size:44 final size:44
Alignment explanation
Indices: 24697749--24698182 Score: 593
Period size: 44 Copynumber: 9.9 Consensus size: 44
24697739 TTCGTTATCC
*
24697749 TCGATCTGCTCTCTGTCAATACAGAGACACCAAATCTG-CTATC-
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC-ATCT
* * ** * * *
24697792 TCGGATTTGATCTCTAACAATATAGAGACGCCAAACCTGTTATCT
1 TC-GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
*
24697837 TCGATCTGCTCTCTGTCAATACAGAAACGCCAAATCTGTCATCT
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
* * * * *
24697881 TTGATCTGTTCTCTGACAATACAGAGAAGCCAAATCTGTCATCA
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
** *
24697925 TCGATCTGCTCTCTAACAATACAGATACGCCAAATCTGTCATCT
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
* * * *
24697969 TCGATCTGCTCTCTGTTAATATAGATACGCTAAATCTGTCATCT
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
* *
24698013 TTGATCTGCTCTCTGTCAATACAGAGACGCCAAATTTGTCATCT
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
*
24698057 TTGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
*
24698101 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTATCATCT
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
* *
24698145 TCGATCTGCTCCCTGACAATACAGAGACGCCAAATCTG
1 TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTG
24698183 CTATTGGTGA
Statistics
Matches: 343, Mismatches: 45, Indels: 5
0.87 0.11 0.01
Matches are distributed among these distances:
43 2 0.01
44 339 0.99
45 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
TCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCT
Found at i:24710115 original size:27 final size:29
Alignment explanation
Indices: 24710054--24710115 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 29
24710044 AAAATAATAA
*
24710054 AAATATATTATATGATATAATAGCTTAAT
1 AAATATATTATATGAAATAATAGCTTAAT
* *
24710083 ATATAT-TTATAT-AAATAATA-CTATATT
1 AAATATATTATATGAAATAATAGCT-TAAT
24710110 AAATAT
1 AAATAT
24710116 GTATGAAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.07
27 15 0.54
28 6 0.21
29 5 0.18
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATATATTATATGAAATAATAGCTTAAT
Found at i:24710265 original size:9 final size:10
Alignment explanation
Indices: 24710244--24710319 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 10
24710234 TTGAAGTAAT
24710244 ATAAAATATA
1 ATAAAATATA
24710254 ATAAAA-ATA
1 ATAAAATATA
*
24710263 ATATAATGAATA
1 ATAAAAT--ATA
*
24710275 ATATATATATA
1 ATA-AAATATA
*
24710286 GTAAAATGAT-
1 ATAAAAT-ATA
* *
24710296 ATAATATATT
1 ATAAAATATA
24710306 ATAAAATAT-
1 ATAAAATATA
24710315 ATAAA
1 ATAAA
24710320 TAAAATGTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
9 15 0.29
10 22 0.42
11 7 0.13
12 6 0.12
13 2 0.04
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (10 bp):
ATAAAATATA
Found at i:24710284 original size:18 final size:18
Alignment explanation
Indices: 24710221--24710285 Score: 50
Period size: 18 Copynumber: 3.8 Consensus size: 18
24710211 AAAATTATAC
* *
24710221 ATAATA-ATAAATATTGA
1 ATAATATATATATAATGA
*
24710238 AGTAATATAAAATATAAT-A
1 A-TAATAT-ATATATAATGA
24710257 A-AA-ATA-ATATAATGA
1 ATAATATATATATAATGA
24710272 ATAATATATATATA
1 ATAATATATATATA
24710286 GTAAAATGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 13
0.70 0.06 0.24
Matches are distributed among these distances:
14 7 0.18
15 3 0.08
16 4 0.11
17 6 0.16
18 10 0.26
19 2 0.05
20 6 0.16
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.34
Consensus pattern (18 bp):
ATAATATATATATAATGA
Found at i:24710300 original size:36 final size:32
Alignment explanation
Indices: 24710260--24710333 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 32
24710250 TATAATAAAA
* *
24710260 ATAATATAATGAATAATATATATATAGTAAAATGAT
1 ATAATAT-AT-AATAAAATATATA-AATAAAATG-T
*
24710296 ATAATATATTATAAAATATATAAATAAAATGT
1 ATAATATATAATAAAATATATAAATAAAATGT
24710328 ATAATA
1 ATAATA
24710334 ATGTAAATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 7 0.20
33 8 0.23
34 11 0.31
35 2 0.06
36 7 0.20
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.36
Consensus pattern (32 bp):
ATAATATATAATAAAATATATAAATAAAATGT
Found at i:24710304 original size:20 final size:19
Alignment explanation
Indices: 24710277--24710318 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
24710267 AATGAATAAT
24710277 ATATATATAGTAAAATGATATA
1 ATATAT-TA-TAAAAT-ATATA
24710299 ATATATTATAAAATATATA
1 ATATATTATAAAATATATA
24710318 A
1 A
24710319 ATAAAATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 6 0.30
21 2 0.10
22 6 0.30
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
ATATATTATAAAATATATA
Found at i:24719659 original size:18 final size:19
Alignment explanation
Indices: 24719623--24719664 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
24719613 ATCTTAGAAG
24719623 ATAAAAAAAATTAATAACT
1 ATAAAAAAAATTAATAACT
24719642 ATAAAATAAAATT-A-AACT
1 ATAAAA-AAAATTAATAACT
24719660 ATAAA
1 ATAAA
24719665 CTTTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.41
19 7 0.32
20 6 0.27
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAAAAAAAATTAATAACT
Found at i:24724548 original size:6 final size:6
Alignment explanation
Indices: 24724539--24724578 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
24724529 GTAGTACCAT
24724539 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATT
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATT
24724579 GCCTCCACTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.53
Consensus pattern (6 bp):
TATTAG
Found at i:24729766 original size:17 final size:16
Alignment explanation
Indices: 24729728--24729759 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
24729718 GAAGAAAGTT
24729728 AAAATAAGTAATATAC
1 AAAATAAGTAATATAC
24729744 AAAATAA-TAATATAC
1 AAAATAAGTAATATAC
24729759 A
1 A
24729760 CAAAATACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.25
Consensus pattern (16 bp):
AAAATAAGTAATATAC
Found at i:24730010 original size:15 final size:13
Alignment explanation
Indices: 24729978--24730007 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
24729968 AAAATAGTTC
*
24729978 AAAATAATATGTT
1 AAAATAATATATT
24729991 AAAATAATATATT
1 AAAATAATATATT
24730004 AAAA
1 AAAA
24730008 AATGAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AAAATAATATATT
Found at i:24730086 original size:21 final size:22
Alignment explanation
Indices: 24730045--24730086 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
24730035 TATAAAAACA
*
24730045 TGAACTAAAAAAAAAACTCAAT
1 TGAAATAAAAAAAAAACTCAAT
*
24730067 TGAAATAAAAACAAAA-TCAA
1 TGAAATAAAAAAAAAACTCAA
24730087 AGGGATAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.67, C:0.12, G:0.05, T:0.17
Consensus pattern (22 bp):
TGAAATAAAAAAAAAACTCAAT
Found at i:24731698 original size:44 final size:43
Alignment explanation
Indices: 24731574--24731763 Score: 139
Period size: 45 Copynumber: 4.3 Consensus size: 43
24731564 CCTTGTAGAT
* * * **
24731574 TTTAATCTGCTTTACTGCAATTTCAGGGAGATAAGGTTTGTATAT
1 TTTAATCTGCTTCACTGCAACTTCAGGGAGATAA-GATTGTA-GC
* * * **
24731619 TTTTATCCTG-TTCTACTACAACTTTAAAGAGATAAGGATTGTAGC
1 TTTAAT-CTGCTTC-ACTGCAACTTCAGGGAGATAA-GATTGTAGC
* *
24731664 TTTGATCTGCTTCACTGCAACTTCAGGGAGATAAGATCTGATATC
1 TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGAT-TG-TAGC
* * ** *
24731709 TTCAACCTGCACCTCTGCAACTTCAGGGAGATAAGACTTGTAGC
1 TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGA-TTGTAGC
*
24731753 TTAAATCTGCT
1 TTTAATCTGCT
24731764 CTATTGCTAC
Statistics
Matches: 113, Mismatches: 26, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
43 3 0.03
44 33 0.29
45 50 0.44
46 27 0.24
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (43 bp):
TTTAATCTGCTTCACTGCAACTTCAGGGAGATAAGATTGTAGC
Found at i:24732016 original size:44 final size:44
Alignment explanation
Indices: 24731968--24732261 Score: 211
Period size: 44 Copynumber: 6.6 Consensus size: 44
24731958 ATAAGATCCT
*
24731968 CAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATGAGACTA
1 CAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTA
* * * *
24732012 CAATCTTCAG-CTTGTTTCCTTGCTACCTCAGGGAGATAAGGCTA
1 CAATCTTCAGTC-TGCTCCCTTGCTACCTCAGGAAGATAAGACTA
**** ** * * ** * *
24732056 GTGGCTAAAATCTGCTCCCCTGCTATTTCGGGAAGATAAGATTCA
1 CAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACT-A
** * ** * *
24732101 CCGTTTTC-GATCTGC-CCCACAGCTATCTCGAGG-AGACAAGATCTA
1 CAATCTTCAG-TCTGCTCCC-TTGCTACCTC-AGGAAGATAAGA-CTA
* * *
24732146 CAATCTTCGGTCTGCTCCCTTTCTACCTCAGCAAGATAAGACTA
1 CAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTA
* * *
24732190 CAATCTTTAGTTTGCTCCCTTGCTACCTTAGGAAGATAAGACTA
1 CAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTA
*
24732234 CAATCATT-AGCCTGCTCCCTTGCTACCT
1 CAATC-TTCAGTCTGCTCCCTTGCTACCT
24732262 TAGGGAGAGA
Statistics
Matches: 189, Mismatches: 50, Indels: 22
0.72 0.19 0.08
Matches are distributed among these distances:
43 1 0.01
44 131 0.69
45 50 0.26
46 7 0.04
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (44 bp):
CAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTA
Found at i:24748015 original size:38 final size:38
Alignment explanation
Indices: 24747964--24748047 Score: 125
Period size: 38 Copynumber: 2.2 Consensus size: 38
24747954 ATTTGATGTG
* * *
24747964 TATTCGGGTTAAATCTCGCAGG-CTTCGTGCTGGTATTA
1 TATTCGGGATAAATCCCGCAGGTC-TAGTGCTGGTATTA
24748002 TATTCGGGATAAATCCCGCAGGTCTAGTGCTGGTATTA
1 TATTCGGGATAAATCCCGCAGGTCTAGTGCTGGTATTA
24748040 TATTCGGG
1 TATTCGGG
24748048 CCTTCGTGCC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
38 41 0.98
39 1 0.02
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (38 bp):
TATTCGGGATAAATCCCGCAGGTCTAGTGCTGGTATTA
Found at i:24748093 original size:43 final size:43
Alignment explanation
Indices: 24748040--24748207 Score: 273
Period size: 43 Copynumber: 3.9 Consensus size: 43
24748030 GCTGGTATTA
*
24748040 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTAATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
24748083 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
24748126 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
24748169 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
24748208 AATGATATGT
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 116 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:24748588 original size:45 final size:42
Alignment explanation
Indices: 24748521--24748628 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
24748511 TTGACTTGAT
* *
24748521 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
24748566 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
24748608 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
24748629 ACAGGCAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:24761537 original size:23 final size:24
Alignment explanation
Indices: 24761512--24761557 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
24761502 AGAGAAACAA
24761512 AAAAAGG-CTAAG-TGTTTTTTTT
1 AAAAAGGTCTAAGATGTTTTTTTT
*
24761534 AAAAAGGTTTAAGATGTTTTTTTT
1 AAAAAGGTCTAAGATGTTTTTTTT
24761558 TGGTTAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.33
23 4 0.19
24 10 0.48
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (24 bp):
AAAAAGGTCTAAGATGTTTTTTTT
Found at i:24762430 original size:7 final size:7
Alignment explanation
Indices: 24762420--24762466 Score: 60
Period size: 7 Copynumber: 6.9 Consensus size: 7
24762410 TATTTAAAAT
*
24762420 TTTTGTA
1 TTTTATA
24762427 TTTTATA
1 TTTTATA
24762434 TTTTATA
1 TTTTATA
24762441 TTTTATA
1 TTTTATA
24762448 TTTTAT-
1 TTTTATA
*
24762454 CTTTATA
1 TTTTATA
*
24762461 ATTTAT
1 TTTTAT
24762467 TTTATCTACT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
6 5 0.14
7 31 0.86
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (7 bp):
TTTTATA
Found at i:24762460 original size:13 final size:12
Alignment explanation
Indices: 24762425--24762471 Score: 58
Period size: 13 Copynumber: 3.7 Consensus size: 12
24762415 AAAATTTTTG
24762425 TATTTTATATTTT
1 TATTTTATA-TTT
24762438 ATATTTTATATTT
1 -TATTTTATATTT
*
24762451 TATCTTTATAATT
1 TAT-TTTATATTT
24762464 TATTTTAT
1 TATTTTAT
24762472 CTACTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 8 0.26
13 14 0.45
14 9 0.29
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (12 bp):
TATTTTATATTT
Found at i:24775414 original size:44 final size:44
Alignment explanation
Indices: 24775349--24775775 Score: 401
Period size: 44 Copynumber: 9.7 Consensus size: 44
24775339 GTTATCGTGG
* * **
24775349 CAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATTAAAGCCA
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA
* * * *
24775393 CAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTGAAAATAA
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATT-AAAGTTA
* * **
24775438 CAAATCTTATCTCTCTGAAGTTGCAATAGAGTAGATTAAACCTA
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA
* * * * * *
24775482 TAAATCTTATCTCTTTGAAGTTGTAGTGGAGCAGATTGAAGATA
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA
* ** * **
24775526 GCAAATCTTATCTCTTTGAAGTTATAGTAGAACAGATTAAAGCCA
1 -CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA
* *
24775571 CAAATCTTATCTCTCTAAAGTTGCA-TAGAGTAGATTAAAGTTA
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA
* * * *
24775614 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTA
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA
* * * * *
24775658 CAAATCTCATTTCCCT-AACGTTGCA-TGGAGCAGATTGAAGTTA
1 CAAATCTTATCTCTCTGAA-GTTGCAGTAGAGCAGATTAAAGTTA
* * * * *
24775701 TAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAAATTGAAGTTA
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA
* * * * *
24775745 TAAGTCTTATCTCCCTGAAGTTACACTAGAG
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAG
24775776 TAGAACCTCT
Statistics
Matches: 322, Mismatches: 55, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
43 76 0.24
44 172 0.53
45 74 0.23
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (44 bp):
CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA
Found at i:24775661 original size:87 final size:88
Alignment explanation
Indices: 24775349--24775775 Score: 419
Period size: 89 Copynumber: 4.9 Consensus size: 88
24775339 GTTATCGTGG
* * *
24775349 CAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATTAAAGCCACAAATCTTATCTCCCTGAAGT
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
* * *
24775414 TGTAGTAGAGCAGATTGAAAATAA
66 TGCAGTAGAGCAGATT-AAAGTTA
* * * * **
24775438 CAAATCTTATCTCTCTGAAGTTGCAATAGAGTAGATTAAACCTATAAATCTTATCTCTTTGAAGT
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
* * * *
24775503 TGTAGTGGAGCAGATTGAAGATA
66 TGCAGTAGAGCAGATTAAAGTTA
* ** * * * *
24775526 GCAAATCTTATCTCTTTGAAGTTATAGTAGAACAGATTAAAGCCACAAATCTTATCTCTCTAAAG
1 -CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAG
*
24775591 TTGCA-TAGAGTAGATTAAAGTTA
65 TTGCAGTAGAGCAGATTAAAGTTA
* * * * * * *
24775614 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTCATTTCCCT-AACG
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAA-G
* *
24775678 TTGCA-TGGAGCAGATTGAAGTTA
65 TTGCAGTAGAGCAGATTAAAGTTA
* * * * * * * *
24775701 TAAATCTTATCTCTCTGAAGTTGCAGTGGAGTAAATTGAAGTTATAAGTCTTATCTCCCTGAAGT
1 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
* *
24775766 TACACTAGAG
66 TGCAGTAGAG
24775776 TAGAACCTCT
Statistics
Matches: 277, Mismatches: 57, Indels: 9
0.81 0.17 0.03
Matches are distributed among these distances:
86 2 0.01
87 124 0.45
88 23 0.08
89 128 0.46
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (88 bp):
CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
TGCAGTAGAGCAGATTAAAGTTA
Found at i:24777692 original size:27 final size:28
Alignment explanation
Indices: 24777661--24777723 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 28
24777651 ATCTACTATA
*
24777661 TTATTTATTTGCACATGTTATT-TTATT
1 TTATTTATTTGCACATGTCATTATTATT
* ** *
24777688 TTA-TTCTTTGTTCTTGTCATTATTATT
1 TTATTTATTTGCACATGTCATTATTATT
24777715 TTATTTATT
1 TTATTTATT
24777724 CAATTTAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 13 0.46
27 11 0.39
28 4 0.14
ACGTcount: A:0.19, C:0.08, G:0.06, T:0.67
Consensus pattern (28 bp):
TTATTTATTTGCACATGTCATTATTATT
Found at i:24778167 original size:19 final size:19
Alignment explanation
Indices: 24778143--24778221 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
24778133 AATCTTTAAG
24778143 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24778162 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24778181 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24778198 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
24778219 GAT
1 GAT
24778222 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24778173 original size:36 final size:36
Alignment explanation
Indices: 24778133--24778220 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
24778123 ATGGAAATAT
24778133 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
24778169 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
24778205 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
24778221 TCTTGTAATC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 29 0.63
37 1 0.02
38 7 0.15
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:24785981 original size:15 final size:16
Alignment explanation
Indices: 24785955--24785987 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
24785945 ATTTGATCAT
24785955 TAAAATAATAATTATA
1 TAAAATAATAATTATA
*
24785971 TAAAA-AATAATTTTA
1 TAAAATAATAATTATA
24785986 TA
1 TA
24785988 CTAATATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAAATAATAATTATA
Found at i:24789503 original size:3 final size:3
Alignment explanation
Indices: 24789495--24789549 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
24789485 GTTGTTTTAG
24789495 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24789543 TAT TAT T
1 TAT TAT T
24789550 TACTTTCATT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:24789693 original size:26 final size:22
Alignment explanation
Indices: 24789656--24789706 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 22
24789646 TTCCTTTTTA
*
24789656 TTTTTTGTTTTCTTCGTTTGTCGTT
1 TTTTTTCTTTTCTT--TTTGT-GTT
24789681 TTTTTTCTATTTCTTTTTGTGTT
1 TTTTTTCT-TTTCTTTTTGTGTT
24789704 TTT
1 TTT
24789707 GGTTATCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.25
24 5 0.21
25 7 0.29
26 6 0.25
ACGTcount: A:0.02, C:0.10, G:0.12, T:0.76
Consensus pattern (22 bp):
TTTTTTCTTTTCTTTTTGTGTT
Found at i:24793479 original size:12 final size:12
Alignment explanation
Indices: 24793464--24793495 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
24793454 ATGCAGAAGG
24793464 AGATGCAATAAC
1 AGATGCAATAAC
24793476 AGATGCAATAAC
1 AGATGCAATAAC
24793488 AGATGCAA
1 AGATGCAA
24793496 GCACAAATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.16, G:0.19, T:0.16
Consensus pattern (12 bp):
AGATGCAATAAC
Found at i:24793801 original size:83 final size:83
Alignment explanation
Indices: 24793648--24793807 Score: 275
Period size: 83 Copynumber: 1.9 Consensus size: 83
24793638 GGAATGATAA
* * *
24793648 TGAAGATCCTCTCTACCCCCTAGTTTCACCCCGACAAATGCTCAAATGCAACCCGAGATGTACAC
1 TGAAAATCCTCTCTACCCCCTAGTTTCACCCCGACAAATGCTCAAACGCAACCCGAGATGCACAC
*
24793713 GCGAAGGCCATCCGTTAC
66 ACGAAGGCCATCCGTTAC
*
24793731 TGAAAATCCTCTCTACCCCCTAGTTTCACCCTGACAAATGCTCAAACGCAACCCGAGATGCACAC
1 TGAAAATCCTCTCTACCCCCTAGTTTCACCCCGACAAATGCTCAAACGCAACCCGAGATGCACAC
24793796 ACGAAGGCCATC
66 ACGAAGGCCATC
24793808 TATTACAATC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 72 1.00
ACGTcount: A:0.29, C:0.36, G:0.16, T:0.19
Consensus pattern (83 bp):
TGAAAATCCTCTCTACCCCCTAGTTTCACCCCGACAAATGCTCAAACGCAACCCGAGATGCACAC
ACGAAGGCCATCCGTTAC
Found at i:24794543 original size:9 final size:9
Alignment explanation
Indices: 24794529--24794555 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
24794519 GGACTAAACC
24794529 GGAAATTTT
1 GGAAATTTT
24794538 GGAAATTTT
1 GGAAATTTT
24794547 GGAAATTTT
1 GGAAATTTT
24794556 ACCTAGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (9 bp):
GGAAATTTT
Found at i:24795794 original size:54 final size:53
Alignment explanation
Indices: 24795613--24795820 Score: 201
Period size: 54 Copynumber: 3.9 Consensus size: 53
24795603 ACATATCATA
* * * * *
24795613 CCGATGCCATATCCCAGATATGGTCTTACACGGGAA-CACTTATCACATTTCTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATCAC-TTTATT
* * * *
24795666 -CGATGCCATAGCCTAGTTATGGTCTTATAC--AGATCACTTGTATCACTTTAAT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCAC-T-TATCACTTTATT
* * * * *
24795718 CTGAAGCCATAGCCCAACTATGGT-TATATACGAAAATCACTTATCACTTGTTTT
1 CCGATGCCATAGCCCAGCTATGGTCT-TATACGGAAATCACTTATCACTT-TATT
*
24795772 CCGATGCCATAGCCCAGCTATGGTCTTATACGGATATCACTTATCACTT
1 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATCACTT
24795821 GCTGCCATGG
Statistics
Matches: 125, Mismatches: 21, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
50 1 0.01
51 3 0.02
52 32 0.26
53 37 0.30
54 45 0.36
55 7 0.06
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (53 bp):
CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACTTATCACTTTATT
Found at i:24804694 original size:44 final size:44
Alignment explanation
Indices: 24804628--24804830 Score: 148
Period size: 44 Copynumber: 4.6 Consensus size: 44
24804618 AATAAGCAGA
*
24804628 TCTTAT-TCCCTGAAGTTACAGTAGAGCAGATCGAAGCCA-CAAT
1 TCTTATCT-CCTGAAGTTGCAGTAGAGCAGATCGAAGCCAGCAAT
* * * * *
24804671 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAG-TAGCAAG
1 TCTTATCTC-CTGAAGTTGCAGTAGAGCAGATCGAAGCCAGCAAT
* **
24804715 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGA-CTGAAGATAGCAGA-
1 TCTTATCTCC-TGAAGTTGCAGTAGAGCAGATC-GAAGCCAGCA-AT
* * * * *
24804760 TCTTCTCTACCTAAAGTTGCAGTGGAGTAGATCGAAGCCA-CGAT
1 TCTTATCT-CCTGAAGTTGCAGTAGAGCAGATCGAAGCCAGCAAT
* * *
24804804 CCTTATCTCTCTAAAGTTGCACTAGAG
1 TCTTATCTC-CTGAAGTTGCAGTAGAG
24804831 TAGGATAAAA
Statistics
Matches: 129, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
43 11 0.09
44 79 0.61
45 35 0.27
46 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCTGAAGTTGCAGTAGAGCAGATCGAAGCCAGCAAT
Found at i:24804809 original size:133 final size:134
Alignment explanation
Indices: 24804622--24804879 Score: 340
Period size: 133 Copynumber: 1.9 Consensus size: 134
24804612 GCTATAAATA
* * * *
24804622 AGCAGATCTTATTCCCTGAAGTTACAGTAGAGCAGATCGAAGCCACAATTCTTATCTCTCTGAAG
1 AGCAGATCTTATTACCTAAAGTTACAGTAGAGCAGATCGAAGCCACAATCCTTATCTCTCTAAAG
* ** * * ** *
24804687 TTGCAGTAGAGTAGG-TTGAAGTA-GCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGA
66 TTGCACTAGAGTAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
24804750 AGAT
131 AGAT
* * * * *
24804754 AGCAGATCTTCTCTACCTAAAGTTGCAGTGGAGTAGATCGAAGCCACGATCCTTATCTCTCTAAA
1 AGCAGATCTTAT-TACCTAAAGTTACAGTAGAGCAGATCGAAGCCACAATCCTTATCTCTCTAAA
24804819 GTTGCACTAGAGTAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
65 GTTGCACTAGAGTAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
24804880 GTTGAAGTTA
Statistics
Matches: 106, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
132 11 0.10
133 59 0.56
134 5 0.05
135 31 0.29
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (134 bp):
AGCAGATCTTATTACCTAAAGTTACAGTAGAGCAGATCGAAGCCACAATCCTTATCTCTCTAAAG
TTGCACTAGAGTAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA
AGAT
Found at i:24804924 original size:135 final size:133
Alignment explanation
Indices: 24804655--24804937 Score: 309
Period size: 135 Copynumber: 2.1 Consensus size: 133
24804645 ACAGTAGAGC
* * * ** * * **
24804655 AGATCGAAGCCACAATTCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAGTAGCAAGTCTTA
1 AGATCGAAGCCACAATCCTTATCTCTCTAAAGTTGCACTAGAGTAGGTAAAAATAACAAACCTTA
* * * * * * * *
24804720 TCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGATCTTCTCTACCTAAAGTTGCAGTGG
66 TCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACCAGATCTTATATACCTAAAGCTCCAATGA
24804785 AGT
131 AGT
*
24804788 AGATCGAAGCCACGATCCTTATCTCTCTAAAGTTGCACTAGAGTAGGATAAAAATACACAAACCT
1 AGATCGAAGCCACAATCCTTATCTCTCTAAAGTTGCACTAGAGTAGG-TAAAAATA-ACAAACCT
** * *
24804853 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACCA-ATTCTTATAT-CCTTTAAGCTCCA
64 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACCAGA-TCTTATATACC-TAAAGCTCCA
24804916 ATGAAGT
127 ATGAAGT
*
24804923 AGATCGAAGCTACAA
1 AGATCGAAGCCACAA
24804938 ATCTCTTCTC
Statistics
Matches: 122, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
133 43 0.35
134 8 0.07
135 71 0.58
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (133 bp):
AGATCGAAGCCACAATCCTTATCTCTCTAAAGTTGCACTAGAGTAGGTAAAAATAACAAACCTTA
TCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATACCAGATCTTATATACCTAAAGCTCCAATGA
AGT
Found at i:24806467 original size:3 final size:3
Alignment explanation
Indices: 24806459--24806486 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
24806449 GTTTTAGTAA
24806459 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
24806487 TTTCTTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:24806639 original size:27 final size:25
Alignment explanation
Indices: 24806596--24806652 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 25
24806586 AAATTGTTCC
24806596 TTTTTATTTTTATTTTCTTCGTTTGTCG
1 TTTTTATTTTTATTTTCTT--TTTGT-G
24806624 TTTTT-TTTTCTA-TTTCTTTTTGTG
1 TTTTTATTTT-TATTTTCTTTTTGTG
24806648 TTTTT
1 TTTTT
24806653 GTTATCAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 6 0.21
25 5 0.18
27 10 0.36
28 7 0.25
ACGTcount: A:0.05, C:0.09, G:0.09, T:0.77
Consensus pattern (25 bp):
TTTTTATTTTTATTTTCTTTTTGTG
Found at i:24818673 original size:31 final size:31
Alignment explanation
Indices: 24818610--24818692 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
24818600 TTAGGTCCAC
* *
24818610 TTATTTTATTTTTTAA-GTATATTTTAAAAATT
1 TTATTTTA-TTTTTAATTTA-ATATTAAAAATT
*
24818642 TTATTTTATTTTTAATTTAATATTAATAATT
1 TTATTTTATTTTTAATTTAATATTAAAAATT
* * *
24818673 TTATATAATTTTTTATTTAA
1 TTATTTTATTTTTAATTTAA
24818693 ATTTTTTATA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
31 34 0.77
32 10 0.23
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (31 bp):
TTATTTTATTTTTAATTTAATATTAAAAATT
Found at i:24818688 original size:12 final size:12
Alignment explanation
Indices: 24818671--24818704 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
24818661 ATATTAATAA
24818671 TTTTATATAATT
1 TTTTATATAATT
*
24818683 TTTTATTTAAATT
1 TTTTATAT-AATT
24818696 TTTTATATA
1 TTTTATATA
24818705 TAGATAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTATATAATT
Found at i:24821414 original size:21 final size:22
Alignment explanation
Indices: 24821375--24821416 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
24821365 TTTTTCTCTC
* *
24821375 ATTTTATCTTTTTCCAAACACT
1 ATTTTATCTTCTTCAAAACACT
24821397 ATTTT-TCTTCTTCAAAACAC
1 ATTTTATCTTCTTCAAAACAC
24821417 AACATTCTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTTATCTTCTTCAAAACACT
Found at i:24824974 original size:12 final size:12
Alignment explanation
Indices: 24824957--24824986 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
24824947 TCATTTGCTA
24824957 ATATATATTTTT
1 ATATATATTTTT
24824969 ATATATATTTTT
1 ATATATATTTTT
24824981 A-ATATA
1 ATATATA
24824987 AAATATTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATATATTTTT
Found at i:24826913 original size:2 final size:2
Alignment explanation
Indices: 24826906--24826946 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
24826896 CTTCTGAATC
24826906 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24826947 TTCTTTTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24827008 original size:31 final size:30
Alignment explanation
Indices: 24826936--24827010 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 30
24826926 TATATATATA
* *
24826936 TATATATATATTTCTTTTAAATCTATTTATG
1 TATATAT-TATTTCTTTTAAATCTATATACG
24826967 TATATATTATTTCTTCTTAAATC-ATCATACG
1 TATATATTATTTCTT-TTAAATCTAT-ATACG
24826998 TAGTAT-TTATTTC
1 TA-TATATTATTTC
24827011 GAGATTCTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
30 10 0.26
31 26 0.67
32 3 0.08
ACGTcount: A:0.31, C:0.11, G:0.04, T:0.55
Consensus pattern (30 bp):
TATATATTATTTCTTTTAAATCTATATACG
Found at i:24827309 original size:23 final size:22
Alignment explanation
Indices: 24827218--24827315 Score: 65
Period size: 23 Copynumber: 4.4 Consensus size: 22
24827208 TACATGAAAA
*
24827218 TTATTTTAAACTCTTTTATTAT
1 TTATTTTAAACTTTTTTATTAT
* * **
24827240 TCATTGTAAACTTTTATTATTGC
1 TTATTTTAAACTTTT-TTATTAT
* * * *
24827263 TAATTTTAAGAC-TATATAGGTAT
1 TTATTTTAA-ACTTTTTTA-TTAT
24827286 TTATTTTAAACTTTTTTA-TAT
1 TTATTTTAAACTTTTTTATTAT
24827307 ATTATTTTA
1 -TTATTTTA
24827316 GATATATATA
Statistics
Matches: 56, Mismatches: 15, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
21 3 0.05
22 24 0.43
23 27 0.48
24 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (22 bp):
TTATTTTAAACTTTTTTATTAT
Found at i:24827954 original size:4 final size:4
Alignment explanation
Indices: 24827945--24827970 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
24827935 GTTATATATG
24827945 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
24827971 TTGCTCCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:24828927 original size:2 final size:2
Alignment explanation
Indices: 24828920--24828948 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
24828910 TGTAACAATA
24828920 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24828949 ACTTAAGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24833216 original size:45 final size:44
Alignment explanation
Indices: 24833136--24833226 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 44
24833126 AATAGGAAAA
* *
24833136 GAGAAATGGGAAACATTTAGGAATGATTATGGGTTTTTCCAAAATG
1 GAGAAATGGGAAACATTTAGGAATGAATATAGG--TTTCCAAAATG
* *
24833182 GAGAAAT-GGAACCATTT-GGAAATGAATGTAGGTTTCCAAAATG
1 GAGAAATGGGAAACATTTAGG-AATGAATATAGGTTTCCAAAATG
24833225 GA
1 GA
24833227 AATGAAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
43 13 0.32
44 2 0.05
45 18 0.45
46 7 0.17
ACGTcount: A:0.38, C:0.08, G:0.26, T:0.27
Consensus pattern (44 bp):
GAGAAATGGGAAACATTTAGGAATGAATATAGGTTTCCAAAATG
Found at i:24842527 original size:16 final size:16
Alignment explanation
Indices: 24842506--24842536 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
24842496 GCTCATCACA
24842506 TAGCAGCGATACAACG
1 TAGCAGCGATACAACG
24842522 TAGCAGCGATACAAC
1 TAGCAGCGATACAAC
24842537 ACCCTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.26, G:0.23, T:0.13
Consensus pattern (16 bp):
TAGCAGCGATACAACG
Found at i:24843145 original size:25 final size:25
Alignment explanation
Indices: 24843117--24843164 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24843107 ACAGTTTATC
* *
24843117 TATAGTAGTCTCAGTATATACTACT
1 TATAGCAGTCTCAGGATATACTACT
*
24843142 TATAGCAGTTTCAGGATATACTA
1 TATAGCAGTCTCAGGATATACTA
24843165 TCAAAAATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (25 bp):
TATAGCAGTCTCAGGATATACTACT
Found at i:24862564 original size:21 final size:21
Alignment explanation
Indices: 24862540--24862597 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
24862530 TGATTCTAAG
24862540 GTCTCAAGACATGGCACGCAA
1 GTCTCAAGACATGGCACGCAA
** *
24862561 GTCTCGGGACATGGCATGCAA
1 GTCTCAAGACATGGCACGCAA
24862582 GTCTCGAA-ACATGGCA
1 GTCTC-AAGACATGGCA
24862598 AGTAAGGTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.26, G:0.28, T:0.17
Consensus pattern (21 bp):
GTCTCAAGACATGGCACGCAA
Found at i:24862629 original size:21 final size:21
Alignment explanation
Indices: 24862605--24862661 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
24862595 GCAAGTAAGG
24862605 TCTAAGGTCTCAAGAAATGAT
1 TCTAAGGTCTCAAGAAATGAT
*
24862626 TCTAAGGTCTCATGAAATGAT
1 TCTAAGGTCTCAAGAAATGAT
* *
24862647 TCTTATGTCTCAAGA
1 TCTAAGGTCTCAAGA
24862662 CATACGAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (21 bp):
TCTAAGGTCTCAAGAAATGAT
Found at i:24862657 original size:92 final size:92
Alignment explanation
Indices: 24862477--24862645 Score: 284
Period size: 92 Copynumber: 1.8 Consensus size: 92
24862467 AGGCGTTACA
* *
24862477 ACATGGTATGCAAGTCTCGAGACATGGCAAGTAAGGTCTAAGGTCTCAAAAAATGATTCTAAGGT
1 ACATGGCATGCAAGTCTCGAAACATGGCAAGTAAGGTCTAAGGTCTCAAAAAATGATTCTAAGGT
* *
24862542 CTCAAGACATGGCACGCAAGTCTCGGG
66 CTCAAGAAATGACACGCAAGTCTCGGG
*
24862569 ACATGGCATGCAAGTCTCGAAACATGGCAAGTAAGGTCTAAGGTCTCAAGAAATGATTCTAAGGT
1 ACATGGCATGCAAGTCTCGAAACATGGCAAGTAAGGTCTAAGGTCTCAAAAAATGATTCTAAGGT
*
24862634 CTCATGAAATGA
66 CTCAAGAAATGA
24862646 TTCTTATGTC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 71 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (92 bp):
ACATGGCATGCAAGTCTCGAAACATGGCAAGTAAGGTCTAAGGTCTCAAAAAATGATTCTAAGGT
CTCAAGAAATGACACGCAAGTCTCGGG
Found at i:24863331 original size:21 final size:20
Alignment explanation
Indices: 24863306--24863352 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
24863296 GAAACAGTAT
*
24863306 AATTTTTA-TTCTGAAAAATAA
1 AATTTTTACTT-TAAAAAAT-A
*
24863327 AATTTATACTTTAAAAAATA
1 AATTTTTACTTTAAAAAATA
24863347 AATTTT
1 AATTTT
24863353 CACTATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 6 0.27
21 14 0.64
22 2 0.09
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (20 bp):
AATTTTTACTTTAAAAAATA
Found at i:24863592 original size:16 final size:16
Alignment explanation
Indices: 24863571--24863608 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
24863561 AAGGGCTTTT
24863571 GAGTCTCTCCCGTATC
1 GAGTCTCTCCCGTATC
24863587 GAGTCTCTCCCGTATC
1 GAGTCTCTCCCGTATC
24863603 GAGTCT
1 GAGTCT
24863609 AATTATAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.13, C:0.34, G:0.21, T:0.32
Consensus pattern (16 bp):
GAGTCTCTCCCGTATC
Found at i:24874525 original size:11 final size:11
Alignment explanation
Indices: 24874498--24874540 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
24874488 TGACCTTTCC
24874498 AAGGTATGGG-
1 AAGGTATGGGA
*
24874508 TAGGTATGGGA
1 AAGGTATGGGA
*
24874519 AAGGTATGGGC
1 AAGGTATGGGA
24874530 AAGGTATGGGA
1 AAGGTATGGGA
24874541 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:24874537 original size:22 final size:21
Alignment explanation
Indices: 24874498--24874540 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
24874488 TGACCTTTCC
*
24874498 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
24874519 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
24874541 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:24879178 original size:11 final size:11
Alignment explanation
Indices: 24879151--24879193 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
24879141 TGACCTTTCC
24879151 AAGGTATGGG-
1 AAGGTATGGGA
*
24879161 TAGGTATGGGA
1 AAGGTATGGGA
*
24879172 AAGGTATGGGC
1 AAGGTATGGGA
24879183 AAGGTATGGGA
1 AAGGTATGGGA
24879194 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:24879190 original size:22 final size:21
Alignment explanation
Indices: 24879151--24879193 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
24879141 TGACCTTTCC
*
24879151 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
24879172 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
24879194 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:24886580 original size:15 final size:14
Alignment explanation
Indices: 24886550--24886576 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24886540 AACATGTGTT
24886550 TTTTTAAATATTTA
1 TTTTTAAATATTTA
24886564 TTTTTAAATATTT
1 TTTTTAAATATTT
24886577 TATTATACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTAAATATTTA
Found at i:24886908 original size:49 final size:49
Alignment explanation
Indices: 24886852--24886951 Score: 123
Period size: 49 Copynumber: 2.0 Consensus size: 49
24886842 CAAAAATTAC
* * *
24886852 TAGATTTATATAGATTTGAAGT-GGGATATTAGATTTTATATTTAAAA-AT
1 TAGATTTATATAGATTAGAAGTAGGG-TATAACATTTTATA-TTAAAATAT
* *
24886901 TAGATTTATATGGATTAGAATTAGGGTATAACATTTTATATTAAAATAT
1 TAGATTTATATAGATTAGAAGTAGGGTATAACATTTTATATTAAAATAT
24886950 TA
1 TA
24886952 TTAGAAAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
48 6 0.14
49 35 0.80
50 3 0.07
ACGTcount: A:0.40, C:0.01, G:0.15, T:0.44
Consensus pattern (49 bp):
TAGATTTATATAGATTAGAAGTAGGGTATAACATTTTATATTAAAATAT
Found at i:24888152 original size:23 final size:21
Alignment explanation
Indices: 24888126--24888171 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
24888116 TTAAGTGTTC
24888126 ATACTATATATTATAAAAATAAT
1 ATACT-TATATTATAAAAA-AAT
* *
24888149 ATACTTATTTTTTAAAAAAAT
1 ATACTTATATTATAAAAAAAT
24888170 AT
1 AT
24888172 TATAATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 11 0.52
23 5 0.24
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (21 bp):
ATACTTATATTATAAAAAAAT
Found at i:24888304 original size:14 final size:14
Alignment explanation
Indices: 24888258--24888306 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
24888248 ATTGAGCTAT
* *
24888258 TTATAAAATCTTCTT
1 TTATAAAAT-TTATA
24888273 TTATAAATATTATATA
1 TTATAAA-ATT-TATA
24888289 TTATAAAATTTATA
1 TTATAAAATTTATA
24888303 TTAT
1 TTAT
24888307 TTTAAACTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 8 0.27
15 11 0.37
16 11 0.37
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (14 bp):
TTATAAAATTTATA
Found at i:24889130 original size:2 final size:2
Alignment explanation
Indices: 24889123--24889149 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24889113 CAATACATAA
24889123 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
24889150 CAAAAAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24892007 original size:47 final size:47
Alignment explanation
Indices: 24891898--24891996 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
24891888 CATTTGCTCA
24891898 CATTTGACTGAAACCATAATTGAGCTTTGTCTACAATCTTGCAAACT
1 CATTTGACTGAAACCATAATTGAGCTTTGTCTACAATCTTGCAAACT
* * *
24891945 CATTTGACTAAAACCATAATTGAGCTTTGTCTATAATTTTGCAAACT
1 CATTTGACTGAAACCATAATTGAGCTTTGTCTACAATCTTGCAAACT
24891992 CATTT
1 CATTT
24891997 ATTTGAAACC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.37
Consensus pattern (47 bp):
CATTTGACTGAAACCATAATTGAGCTTTGTCTACAATCTTGCAAACT
Found at i:24894752 original size:19 final size:19
Alignment explanation
Indices: 24894728--24894766 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
24894718 CTAGGCTTAG
24894728 ACTTGCGGATTCAATTTCT
1 ACTTGCGGATTCAATTTCT
24894747 ACTTGCGGATTCAATTTCT
1 ACTTGCGGATTCAATTTCT
24894766 A
1 A
24894767 GGTTGTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (19 bp):
ACTTGCGGATTCAATTTCT
Found at i:24896928 original size:2 final size:2
Alignment explanation
Indices: 24896921--24896963 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
24896911 CGTGAAGGGA
24896921 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24896963 A
1 A
24896964 GATCAGCATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24897717 original size:14 final size:14
Alignment explanation
Indices: 24897700--24897729 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
24897690 AGTTAATTAT
24897700 ATATGGTTAAATTC
1 ATATGGTTAAATTC
24897714 ATATGGTTAAATTC
1 ATATGGTTAAATTC
24897728 AT
1 AT
24897730 CTGTAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (14 bp):
ATATGGTTAAATTC
Found at i:24897795 original size:27 final size:27
Alignment explanation
Indices: 24897733--24897783 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
24897723 AATTCATCTG
* *
24897733 TAATATTAAAAATATTATGAAAACAAT
1 TAATAATAAAAAAATTATGAAAACAAT
*
24897760 TAATTATAAAAAAATTAT-AAAACA
1 TAATAATAAAAAAATTATGAAAACA
24897784 TGATAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (27 bp):
TAATAATAAAAAAATTATGAAAACAAT
Found at i:24901063 original size:2 final size:2
Alignment explanation
Indices: 24901056--24901091 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
24901046 TATCATGAAT
24901056 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24901092 AATAAGAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24902805 original size:46 final size:47
Alignment explanation
Indices: 24902755--24902846 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
24902745 ATCATATATA
* * * *
24902755 TGTGGTCAAGCTACTAT-ATTGCAGCCAAGCTGCCAAAATAGAAATG
1 TGTGGTCAAGCCACTATAACTGCAGCCAAGCTACCAAAACAGAAATG
* * *
24902801 TGTGGTCGAGCCACTATAACTGCAGTCAAGCTACCATAACAGAAAT
1 TGTGGTCAAGCCACTATAACTGCAGCCAAGCTACCAAAACAGAAAT
24902847 ATAGTTAAAC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 15 0.39
47 23 0.61
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.23
Consensus pattern (47 bp):
TGTGGTCAAGCCACTATAACTGCAGCCAAGCTACCAAAACAGAAATG
Found at i:24913810 original size:23 final size:24
Alignment explanation
Indices: 24913781--24913852 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 24
24913771 TTTTAGTTTT
24913781 TATATTTTTCCAATCAATTAATTC
1 TATATTTTTCCAATCAATTAATTC
*
24913805 TA-A--TTT-C-ATCAATTTCAATTTT
1 TATATTTTTCCAATCAA-TT-AA-TTC
*
24913827 TATATTTTTCGAATCAATTAATTC
1 TATATTTTTCCAATCAATTAATTC
24913851 TA
1 TA
24913853 GTCCTGACTG
Statistics
Matches: 37, Mismatches: 3, Indels: 16
0.66 0.05 0.29
Matches are distributed among these distances:
19 5 0.14
20 3 0.08
21 5 0.14
22 4 0.11
23 2 0.05
24 6 0.16
25 5 0.14
26 2 0.05
27 5 0.14
ACGTcount: A:0.33, C:0.14, G:0.01, T:0.51
Consensus pattern (24 bp):
TATATTTTTCCAATCAATTAATTC
Found at i:24913812 original size:46 final size:46
Alignment explanation
Indices: 24913759--24913852 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
24913749 TCTTATGTTT
* *
24913759 TAATTTCATCAATTTTAGTTTTTATATTTTTCCAATCAATTAATTC
1 TAATTTCATCAATTTCAATTTTTATATTTTTCCAATCAATTAATTC
*
24913805 TAATTTCATCAATTTCAATTTTTATATTTTTCGAATCAATTAATTC
1 TAATTTCATCAATTTCAATTTTTATATTTTTCCAATCAATTAATTC
24913851 TA
1 TA
24913853 GTCCTGACTG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.32, C:0.13, G:0.02, T:0.53
Consensus pattern (46 bp):
TAATTTCATCAATTTCAATTTTTATATTTTTCCAATCAATTAATTC
Found at i:24914497 original size:18 final size:17
Alignment explanation
Indices: 24914456--24914499 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
24914446 CAAAATTTTT
24914456 TATTTAAAT-TTAATTA
1 TATTTAAATATTAATTA
24914472 TA--TAAATATTAATGTA
1 TATTTAAATATTAAT-TA
24914488 TATTTAAATATT
1 TATTTAAATATT
24914500 TGTTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 5 0.21
15 5 0.21
16 6 0.25
18 8 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TATTTAAATATTAATTA
Found at i:24916048 original size:19 final size:19
Alignment explanation
Indices: 24916013--24916050 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
24916003 GAGCTGATAG
24916013 TTTGATTGAGTGAAAAAAT
1 TTTGATTGAGTGAAAAAAT
*
24916032 TTTGAATTGAGGGAAAAAA
1 TTTG-ATTGAGTGAAAAAA
24916051 AGTTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.32
Consensus pattern (19 bp):
TTTGATTGAGTGAAAAAAT
Found at i:24916051 original size:21 final size:19
Alignment explanation
Indices: 24916011--24916056 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
24916001 TAGAGCTGAT
*
24916011 AGTTTGATTGAGTGAAAAA
1 AGTTTGATTGAGGGAAAAA
*
24916030 ATTTTGAATTGAGGGAAAAAA
1 AGTTTG-ATTGAGGG-AAAAA
24916051 AGTTTG
1 AGTTTG
24916057 TTATTATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 5 0.23
20 7 0.32
21 10 0.45
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.33
Consensus pattern (19 bp):
AGTTTGATTGAGGGAAAAA
Found at i:24920055 original size:15 final size:15
Alignment explanation
Indices: 24920035--24920065 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24920025 TTGGTTGGAT
*
24920035 TAGCTCTTATGAGCA
1 TAGCTCTCATGAGCA
24920050 TAGCTCTCATGAGCA
1 TAGCTCTCATGAGCA
24920065 T
1 T
24920066 TTGGAGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (15 bp):
TAGCTCTCATGAGCA
Found at i:24930575 original size:68 final size:68
Alignment explanation
Indices: 24930452--24930633 Score: 222
Period size: 68 Copynumber: 2.7 Consensus size: 68
24930442 AGAGGTTTAA
* * * * *
24930452 TGTGTAAGACCATAGCTAGGCTAT-GACAACATATGGAGTCCTCCAAGATAATAAACACGGGTTT
1 TGTGTAAAACCATAGCTAGGCTATGGA-AACATATGAAGTCTTCCAAGACAATAAACACGAGTTT
24930516 ATAT
65 ATAT
* * * *
24930520 TGTTTAAAACCATAGCTAGGCTATGGAAACATATGAAGTCTTCCAGGACAGTAAACATGAGTTTA
1 TGTGTAAAACCATAGCTAGGCTATGGAAACATATGAAGTCTTCCAAGACAATAAACACGAGTTTA
24930585 TAT
66 TAT
* * * * *
24930588 TGTGTAAGACTATAGCTAGGCTATGGTAACAAATGAAGTCTACCAA
1 TGTGTAAAACCATAGCTAGGCTATGGAAACATATGAAGTCTTCCAA
24930634 AATGGAAAAA
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
68 95 0.98
69 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (68 bp):
TGTGTAAAACCATAGCTAGGCTATGGAAACATATGAAGTCTTCCAAGACAATAAACACGAGTTTA
TAT
Found at i:24939309 original size:19 final size:18
Alignment explanation
Indices: 24939268--24939316 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 18
24939258 AATCATCAAA
*
24939268 CTTTTTTTTTTCACTTTT
1 CTTTTTTTTTTCAATTTT
24939286 CTTTTTTTTTTCGAATTATT
1 CTTTTTTTTTTC-AATT-TT
24939306 -TTTTCTTTTTT
1 CTTTT-TTTTTT
24939317 TTTTGTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 12 0.44
19 7 0.26
20 8 0.30
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTTTTTTTTCAATTTT
Found at i:24946760 original size:35 final size:35
Alignment explanation
Indices: 24946714--24946784 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
24946704 CGTCGTGCCC
*
24946714 AGCGTCATGCCCACAACTCCAGCCGTGACAGAATA
1 AGCGTCATGCCCACAACTCCAACCGTGACAGAATA
* * *
24946749 AGCGTCGTGCCCGCGACTCCAACCGTGACAGAATA
1 AGCGTCATGCCCACAACTCCAACCGTGACAGAATA
24946784 A
1 A
24946785 AAAGAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.30, C:0.34, G:0.23, T:0.14
Consensus pattern (35 bp):
AGCGTCATGCCCACAACTCCAACCGTGACAGAATA
Found at i:24949350 original size:33 final size:33
Alignment explanation
Indices: 24949293--24949362 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
24949283 TTGAGGGTTC
* *
24949293 TTTGTTTTCAGGTTTTCGGGATTTAGTTTTTAT
1 TTTGGTTTCAGGTTTTCGGCATTTAGTTTTTAT
*
24949326 TTTGGTTTCGGGTTTTCGGCATTTAGTTTTTAT
1 TTTGGTTTCAGGTTTTCGGCATTTAGTTTTTAT
24949359 TTTG
1 TTTG
24949363 TACTCTTCGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.10, C:0.07, G:0.23, T:0.60
Consensus pattern (33 bp):
TTTGGTTTCAGGTTTTCGGCATTTAGTTTTTAT
Found at i:24952771 original size:28 final size:26
Alignment explanation
Indices: 24952713--24952764 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
24952703 ATGCAGTTAT
24952713 ATTATTTTTTTTGGTTGATTAATTAC
1 ATTATTTTTTTTGGTTGATTAATTAC
* *
24952739 TTTATTGTTTCTTTGGTTGTTTAATT
1 ATTATT-TTT-TTTGGTTGATTAATT
24952765 TGATTATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 3 0.14
28 14 0.64
ACGTcount: A:0.17, C:0.04, G:0.13, T:0.65
Consensus pattern (26 bp):
ATTATTTTTTTTGGTTGATTAATTAC
Found at i:24974627 original size:12 final size:11
Alignment explanation
Indices: 24974612--24974689 Score: 70
Period size: 12 Copynumber: 7.0 Consensus size: 11
24974602 TCCAATACAT
24974612 TATTTTATCATA
1 TATTTTAT-ATA
*
24974624 TATTTTATCTA
1 TATTTTATATA
**
24974635 TAAATTATATTA
1 TATTTTATA-TA
* *
24974647 TATTATATATTT
1 TATTTTATA-TA
24974659 TATTTTATATA
1 TATTTTATATA
24974670 TATTTT-TATA
1 TATTTTATATA
24974680 TATTTT-TATA
1 TATTTTATATA
24974690 AAATTGTATT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
10 14 0.25
11 15 0.27
12 26 0.47
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.63
Consensus pattern (11 bp):
TATTTTATATA
Found at i:24974641 original size:28 final size:26
Alignment explanation
Indices: 24974610--24974685 Score: 73
Period size: 30 Copynumber: 2.7 Consensus size: 26
24974600 TATCCAATAC
24974610 ATTATTTTATCATATATTTTATCTATAA
1 ATTATTTTAT-ATATATTTTAT-TATAA
* *
24974638 ATTATATTATATTATATATTTTATTTTAT
1 ATTAT-TT-TA-TATATATTTTATTATAA
24974667 ATATATTTT-TATATATTTT
1 AT-TATTTTATATATATTTT
24974686 TATAAAATTG
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
26 10 0.24
28 6 0.14
29 9 0.21
30 16 0.38
31 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (26 bp):
ATTATTTTATATATATTTTATTATAA
Done.