Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 89 of 328
Found at i:24974681 original size:10 final size:10
Alignment explanation
Indices: 24974659--24974689 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
24974649 TTATATATTT
24974659 TATTTTATATA
1 TATTTT-TATA
24974670 TATTTTTATA
1 TATTTTTATA
24974680 TATTTTTATA
1 TATTTTTATA
24974690 AAATTGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.70
11 6 0.30
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TATTTTTATA
Found at i:24987350 original size:206 final size:206
Alignment explanation
Indices: 24986982--24987743 Score: 1202
Period size: 206 Copynumber: 3.7 Consensus size: 206
24986972 GTAGATCTGG
24986982 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * * *
24987047 GATTTGGCTTTCACATGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAG
65 GATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * ** * **
24987112 AGAACAAATCA-AAGTTTGGCGTCTCTATATTCGACGAAAAGCAGATACATAGCAGATCTGGCCT
130 AGAACAAAT-AGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCT
* *
24987176 TCAGATGTTTATA
194 TCAGATGATTAGA
* *
24987189 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
24987254 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
24987319 GAACAAATAGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATAGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
24987384 AGATGATTAGA
196 AGATGATTAGA
* * * * *
24987395 CTAAAGTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGTTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
*
24987460 ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
24987525 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGAAGACACATAGCAGATCTAACCTTC
131 GAACAAATAGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
24987590 AGATGATTAGA
196 AGATGATTAGA
* * *
24987601 CTGAAGCAGATCCAAGTTGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * **
24987666 ATTTGGTTTTCGCGTGCTTACGCTGAATCAAATCTAAGATGATTTGGCATCTCCATATTGTCAGA
66 ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
24987731 GAACAAATCGAAG
131 GAACAAATAGAAG
24987744 AAGCAGATTT
Statistics
Matches: 514, Mismatches: 40, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 506 0.98
207 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATAGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:24992131 original size:10 final size:10
Alignment explanation
Indices: 24992116--24992213 Score: 110
Period size: 10 Copynumber: 9.4 Consensus size: 10
24992106 TCCTCTTATC
24992116 CAAATTCTCT
1 CAAATTCTCT
24992126 CAAATTCTCT
1 CAAATTCTCT
24992136 CAAATTCT-T
1 CAAATTCTCT
24992145 CAAAAAATTCTCT
1 C---AAATTCTCT
24992158 CAAATTCTCT
1 CAAATTCTCT
24992168 CAAATTCT-T
1 CAAATTCTCT
24992177 CCAAAAATTCTCT
1 -C--AAATTCTCT
*
24992190 CATATTCTCT
1 CAAATTCTCT
*
24992200 CAAATTTTCT
1 CAAATTCTCT
24992210 CAAA
1 CAAA
24992214 GCTCTCTTTA
Statistics
Matches: 77, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
9 3 0.04
10 56 0.73
12 15 0.19
13 3 0.04
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:24992153 original size:32 final size:32
Alignment explanation
Indices: 24992117--24992205 Score: 160
Period size: 32 Copynumber: 2.8 Consensus size: 32
24992107 CCTCTTATCC
24992117 AAATTCTCTCAAATTCTCTCAAATTCTTCAAA
1 AAATTCTCTCAAATTCTCTCAAATTCTTCAAA
*
24992149 AAATTCTCTCAAATTCTCTCAAATTCTTCCAA
1 AAATTCTCTCAAATTCTCTCAAATTCTTCAAA
*
24992181 AAATTCTCTCATATTCTCTCAAATT
1 AAATTCTCTCAAATTCTCTCAAATT
24992206 TTCTCAAAGC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.39
Consensus pattern (32 bp):
AAATTCTCTCAAATTCTCTCAAATTCTTCAAA
Found at i:24992203 original size:22 final size:20
Alignment explanation
Indices: 24992116--24992213 Score: 110
Period size: 22 Copynumber: 4.7 Consensus size: 20
24992106 TCCTCTTATC
24992116 CAAATTCTCTCAAATTCTCT
1 CAAATTCTCTCAAATTCTCT
24992136 CAAATTCT-TCAAAAAATTCTCT
1 CAAATTCTCTC---AAATTCTCT
24992158 CAAATTCTCTCAAATTCT-T
1 CAAATTCTCTCAAATTCTCT
*
24992177 CCAAAAATTCTCTCATATTCTCT
1 -C--AAATTCTCTCAAATTCTCT
*
24992200 CAAATTTTCTCAAA
1 CAAATTCTCTCAAA
24992214 GCTCTCTTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 16
0.78 0.03 0.19
Matches are distributed among these distances:
19 3 0.04
20 27 0.40
22 34 0.51
23 3 0.04
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.39
Consensus pattern (20 bp):
CAAATTCTCTCAAATTCTCT
Found at i:24992457 original size:47 final size:48
Alignment explanation
Indices: 24992363--24992459 Score: 151
Period size: 47 Copynumber: 2.0 Consensus size: 48
24992353 AGTGATAATT
**
24992363 TTAATATTTCAATAGTATTTAATATTTTTTTAATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
* *
24992411 TTAATTTTTCAATACAATTTAATA-TTTTTTCATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
24992458 TT
1 TT
24992460 TTATAATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
47 24 0.53
48 21 0.47
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (48 bp):
TTAATATTTCAATACAATTTAATATTTTTTTAATTTATGCAATTTTAA
Found at i:24992468 original size:23 final size:23
Alignment explanation
Indices: 24992388--24992468 Score: 58
Period size: 23 Copynumber: 3.5 Consensus size: 23
24992378 TATTTAATAT
*
24992388 TTTTTTAATTTATGCAATTTTAA
1 TTTTATAATTTATGCAATTTTAA
* * * *
24992411 -TTAAT-TTTTCAATACAATTTAATA
1 TTTTATAATTT--ATGCAATTTTA-A
* *
24992435 TTTTTTCATTTATGCAATTTTAA
1 TTTTATAATTTATGCAATTTTAA
24992458 TTTTATAATTT
1 TTTTATAATTT
24992469 TTTATAACAG
Statistics
Matches: 41, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
21 3 0.07
22 3 0.07
23 19 0.46
24 10 0.24
25 3 0.07
26 3 0.07
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTATAATTTATGCAATTTTAA
Found at i:24993411 original size:7 final size:7
Alignment explanation
Indices: 24993399--24993444 Score: 74
Period size: 7 Copynumber: 6.6 Consensus size: 7
24993389 AATTATCTCA
24993399 TATTTAG
1 TATTTAG
*
24993406 TATTTAA
1 TATTTAG
24993413 TATTTAG
1 TATTTAG
24993420 TATTTAG
1 TATTTAG
*
24993427 TATTTAC
1 TATTTAG
24993434 TATTTAG
1 TATTTAG
24993441 TATT
1 TATT
24993445 ATGTATACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:24993450 original size:21 final size:21
Alignment explanation
Indices: 24993399--24993444 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
24993389 AATTATCTCA
24993399 TATTTAGTATTTAATATTTAG
1 TATTTAGTATTTAATATTTAG
*
24993420 TATTTAGTATTTACTATTTAG
1 TATTTAGTATTTAATATTTAG
24993441 TATT
1 TATT
24993445 ATGTATACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.59
Consensus pattern (21 bp):
TATTTAGTATTTAATATTTAG
Found at i:24994103 original size:18 final size:18
Alignment explanation
Indices: 24994062--24994096 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24994052 GCCAGGTGCG
*
24994062 TATCCTAGCCCTTATATA
1 TATCCTAACCCTTATATA
24994080 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
24994097 GTTTCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:24994271 original size:22 final size:23
Alignment explanation
Indices: 24994246--24994290 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
24994236 CCATCGCCTT
*
24994246 ATGGG-ATTCAAACACCTCCGCC
1 ATGGGAATGCAAACACCTCCGCC
24994268 ATGGGTAATGCAAACACCTCCGC
1 ATGGG-AATGCAAACACCTCCGC
24994291 AGTCATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
24 15 0.75
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.18
Consensus pattern (23 bp):
ATGGGAATGCAAACACCTCCGCC
Found at i:24994545 original size:29 final size:29
Alignment explanation
Indices: 24994512--24994602 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
24994502 TATTCTTTCA
24994512 TTTAATAAAATAAAAGTTGTTTTTAATAT
1 TTTAATAAAATAAAAGTTGTTTTTAATAT
* * *
24994541 TTTAAT----TATAATTTACTCTTTT-ATAT
1 TTTAATAAAATAAAAGTT-GT-TTTTAATAT
*
24994567 TTGTAATAAAATAAAAGTTGTTTTTAGTAT
1 TT-TAATAAAATAAAAGTTGTTTTTAATAT
24994597 TTTAAT
1 TTTAAT
24994603 TATAATTTAC
Statistics
Matches: 47, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
25 6 0.13
26 7 0.15
27 8 0.17
29 14 0.30
30 6 0.13
31 6 0.13
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (29 bp):
TTTAATAAAATAAAAGTTGTTTTTAATAT
Found at i:24994562 original size:27 final size:26
Alignment explanation
Indices: 24994531--24994629 Score: 78
Period size: 27 Copynumber: 3.6 Consensus size: 26
24994521 ATAAAAGTTG
24994531 TTTTTAATATTT-TAATTATAATTTAC
1 TTTTT-ATATTTGTAATTATAATTTAC
* * *
24994557 TCTTTTATATTTGTAATAAAATAAAAGTT-G
1 T-TTTTATATTTGTAAT----TATAATTTAC
24994587 TTTTTAGTATTT-TAATTATAATTTAC
1 TTTTTA-TATTTGTAATTATAATTTAC
24994613 TATTTTATATTTGTAAT
1 T-TTTTATATTTGTAAT
24994630 AGAATAAAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
25 6 0.11
26 13 0.23
27 17 0.30
29 9 0.16
30 6 0.11
31 6 0.11
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (26 bp):
TTTTTATATTTGTAATTATAATTTAC
Found at i:24994579 original size:56 final size:56
Alignment explanation
Indices: 24994514--24994651 Score: 231
Period size: 56 Copynumber: 2.5 Consensus size: 56
24994504 TTCTTTCATT
*
24994514 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTATTTTATATTTG
*
24994570 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTATTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTATTTTATATTTG
* * *
24994626 TAATAGAATAAAAGTTATTTTGAATA
1 TAATAAAATAAAAGTTGTTTTTAATA
24994652 AGGAAATATT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (56 bp):
TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTATTTTATATTTG
Found at i:25000640 original size:26 final size:26
Alignment explanation
Indices: 25000609--25000716 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
25000599 TGAAATGCCC
*
25000609 ATCATGGAACATTTACCTAAGCCATT
1 ATCATGGAACATTTACCTAACCCATT
25000635 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
25000661 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
25000687 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
25000713 ATCA
1 ATCA
25000717 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:25001302 original size:26 final size:26
Alignment explanation
Indices: 25001268--25001331 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
25001258 AATTAATATT
25001268 TAATTTAATTAATTAATCTTACACCC
1 TAATTTAATTAATTAATCTTACACCC
25001294 TAATTTAATTAATTAATCTTACACCC
1 TAATTTAATTAATTAATCTTACACCC
*
25001320 TAATTTGATTAA
1 TAATTTAATTAA
25001332 CTAAACCCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.44
Consensus pattern (26 bp):
TAATTTAATTAATTAATCTTACACCC
Found at i:25001373 original size:16 final size:17
Alignment explanation
Indices: 25001333--25001378 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
25001323 TTTGATTAAC
25001333 TAAACCCTTACAAAAACCA
1 TAAACCC-TA-AAAAACCA
*
25001352 TAAACCCTAAAAAACCC
1 TAAACCCTAAAAAACCA
25001369 T-AACCCTAAA
1 TAAACCCTAAA
25001379 CTATAAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 9 0.35
17 8 0.31
18 2 0.08
19 7 0.27
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (17 bp):
TAAACCCTAAAAAACCA
Found at i:25001378 original size:23 final size:22
Alignment explanation
Indices: 25001347--25001395 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
25001337 CCCTTACAAA
25001347 AACCATAAACCCTA-AAAAACCCT
1 AACCATAAA--CTATAAAAACCCT
*
25001370 AACCCTAAACTATAAAAACCCT
1 AACCATAAACTATAAAAACCCT
25001392 AACC
1 AACC
25001396 TACCCTAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 3 0.12
22 13 0.54
23 8 0.33
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.14
Consensus pattern (22 bp):
AACCATAAACTATAAAAACCCT
Found at i:25001391 original size:32 final size:32
Alignment explanation
Indices: 25001353--25001425 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
25001343 CAAAAACCAT
25001353 AAACCCTAAAAAACCCTAACCCTAA-ACTATAA
1 AAACCCTAAAAAACCCTAACCCTAACACTA-AA
*** *
25001385 AAACCCTAACCTACCCTAACCCTAACCCTAAA
1 AAACCCTAAAAAACCCTAACCCTAACACTAAA
25001417 AAACCCTAA
1 AAACCCTAA
25001426 TCCCAACAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
32 33 0.92
33 3 0.08
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (32 bp):
AAACCCTAAAAAACCCTAACCCTAACACTAAA
Found at i:25007413 original size:43 final size:43
Alignment explanation
Indices: 25007352--25007437 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
25007342 CCAGAAACGG
25007352 TGGTAAGCAAAGGTAAGAATGAGGTAGGCCACAATGACCTAAA
1 TGGTAAGCAAAGGTAAGAATGAGGTAGGCCACAATGACCTAAA
25007395 TGGTAAGCAAAGGTAAGAATGAGGTAGGCCACAATGACCTAAA
1 TGGTAAGCAAAGGTAAGAATGAGGTAGGCCACAATGACCTAAA
25007438 ACCAGTAAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.42, C:0.14, G:0.28, T:0.16
Consensus pattern (43 bp):
TGGTAAGCAAAGGTAAGAATGAGGTAGGCCACAATGACCTAAA
Found at i:25018412 original size:44 final size:42
Alignment explanation
Indices: 25018349--25018608 Score: 137
Period size: 44 Copynumber: 5.8 Consensus size: 42
25018339 TTGTCGTTTG
* * * * *
25018349 AATCTGCTCTATTGCAACTTCAAGGAGATAAAATTAGTAGCTTC
1 AATCTGCTCCACTACAACTTTAAGGAGATAAGATT-GTA-CTTC
* * * * *
25018393 AATCTGTTCCACTACAACTTTAGGGAGATAAGGTT-CACTTT
1 AATCTGCTCCACTACAACTTTAAGGAGATAAGATTGTACTTC
* *
25018434 AATCTGCTCCACTGCAATTTTAAGGAGATAAGATTCGTAACTTC
1 AATCTGCTCCACTACAACTTTAAGGAGATAAGATT-GT-ACTTC
* * * *
25018478 AATCTGCTCTATTGCAAC-TTCAGAGAGATAAGATCTGTAACTTGTCGC
1 AATCTGCTCCACTACAACTTTAAG-GAGATAAGAT-TGT-AC-T-T--C
* ** * * *
25018526 TTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTC
1 ---AATCTGCTCCACTACAACTTTAAGGAGATAAGATT-G-TA-CTTC
**
25018574 AATCTGCTCCACTGTAACTTTAAGGAGATAAGATT
1 AATCTGCTCCACTACAACTTTAAGGAGATAAGATT
25018609 TTTAACTTGT
Statistics
Matches: 168, Mismatches: 32, Indels: 31
0.73 0.14 0.13
Matches are distributed among these distances:
41 33 0.20
42 1 0.01
43 4 0.02
44 61 0.36
45 34 0.20
46 1 0.01
48 2 0.01
50 2 0.01
51 26 0.15
52 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (42 bp):
AATCTGCTCCACTACAACTTTAAGGAGATAAGATTGTACTTC
Found at i:25018496 original size:85 final size:85
Alignment explanation
Indices: 25018349--25018509 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
25018339 TTGTCGTTTG
* * * * *
25018349 AATCTGCTCTATTGCAACTTCAAGGAGATAAAATTAGTAGCTTCAATCTGTTCCACTACAACTTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAAATTAGTAACTTCAATCTGCTCCACTACAACTTC
*
25018414 AGGGAGATAAGGTTCACTTT
66 AGAGAGATAAGGTTCACTTT
* * * * * * *
25018434 AATCTGCTCCACTGCAATTTTAAGGAGATAAGATTCGTAACTTCAATCTGCTCTATTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAAATTAGTAACTTCAATCTGCTCCACTACAACTTC
25018499 AGAGAGATAAG
66 AGAGAGATAAG
25018510 ATCTGTAACT
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
85 63 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (85 bp):
AATCTGCTCCACTGCAACTTCAAGGAGATAAAATTAGTAACTTCAATCTGCTCCACTACAACTTC
AGAGAGATAAGGTTCACTTT
Found at i:25018585 original size:45 final size:45
Alignment explanation
Indices: 25018349--25018935 Score: 296
Period size: 51 Copynumber: 12.7 Consensus size: 45
25018339 TTGTCGTTTG
* * * * **
25018349 AATCTGCTCTATTGCAACTTCAAGGAGATAAAATTAG-TAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTATATTC
* * * *
25018393 AATCTGTTCCACTACAACTTTAGGGAGATAAGGTT--C-ACT-TT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTA-TATTC
* * * *
25018434 AATCTGCTCCACTGCAATTTTAAGGAGATAAGATTCG-TA-ACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTATA-TTC
* * * * * * *
25018478 AATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAACTTGTCGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TAGC-TAT--ATTC
* * * * *
25018529 AATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTATATTC
* * * * * *
25018574 AATCTGCTCCACTGTAACTTTAAGGAGATAAGATTTTTAACTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA---TTAGC-TATA--TTC
* * * * * *
25018625 AATCTGTTCTACTGTAACTTTAGGGAGATAAGATTCGCTGTATTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTATATTC
* * * *
25018670 AATCTGCTCAACTGCAACTTCAGGGAGATAAAATTTGTAACATGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TAGC-TATA--TTC
* * *
25018721 AATCTGTTCCACTGTAACTTCAGGGA-ATAAGATTAACTATATTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTATATTC
* * * * *
25018765 AATCTACTTCACTGCAACTTCAAGGAGATAAGGTTTGTGACTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA-GATT-AG-C-TATA--TTC
*
25018816 AATCTGTTCCACTGCAACTTCAGGG-GAATAAGATTAGCTATATTC
1 AATCTGCTCCACTGCAACTTCAGGGAG-ATAAGATTAGCTATATTC
* * * * *** *
25018861 AATCTCCTCTACTGCAACTTTAGGGAGATAAGATTTG-TGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTATATTC
* * *
25018905 AATCAGTTCCACTGCAACTTTAGGGAGATAA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAA
25018936 AATTTGCCAT
Statistics
Matches: 417, Mismatches: 89, Indels: 74
0.72 0.15 0.13
Matches are distributed among these distances:
41 30 0.07
42 3 0.01
43 3 0.01
44 108 0.26
45 99 0.24
46 8 0.02
47 16 0.04
48 13 0.03
49 14 0.03
50 9 0.02
51 114 0.27
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTATATTC
Found at i:25018607 original size:96 final size:96
Alignment explanation
Indices: 25018430--25018898 Score: 550
Period size: 96 Copynumber: 4.9 Consensus size: 96
25018420 ATAAGGTTCA
* * * * * * *
25018430 CTTTAATCTGCTCCACTGCAATTTTAAGGAGATAAGATTCG-TA-ACTTCAATCTGCTCTATTGC
1 CTTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATA-TTCAATCTGCTCCACTGC
* * *
25018493 AAC-TTCAGAGAGATAAGATCTGTAACTTGTCG
65 AACTTTAAG-GAGATAAGATTTGTAACTTGTAG
*
25018525 CTTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGTA
1 CTTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGCA
*
25018590 ACTTTAAGGAGATAAGATTTTTAACTTGTAG
66 ACTTTAAGGAGATAAGATTTGTAACTTGTAG
* * * *
25018621 CTTTAATCTGTTCTACTGTAACTTTAGGGAGATAAGATTCGCTGTATTCAATCTGCTCAACTGCA
1 CTTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGCA
* * * *
25018686 ACTTCAGGGAGATAAAATTTGTAACATGTAG
66 ACTTTAAGGAGATAAGATTTGTAACTTGTAG
* * ** * *
25018717 CTTCAATCTGTTCCACTGTAACTTCAGGG-AATAAGATTAACTATATTCAATCTACTTCACTGCA
1 CTTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGCA
* * * *
25018781 ACTTCAAGGAGATAAGGTTTGTGACTTATAG
66 ACTTTAAGGAGATAAGATTTGTAACTTGTAG
* * * * * * *
25018812 CTTCAATCTGTTCCACTGCAACTTCAGGGGAATAAGATTAGCTATATTCAATCTCCTCTACTGCA
1 CTTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGCA
*
25018877 ACTTTAGGGAGATAAGATTTGT
66 ACTTTAAGGAGATAAGATTTGT
25018899 GGCTTTAATC
Statistics
Matches: 324, Mismatches: 46, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
95 117 0.36
96 202 0.62
97 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (96 bp):
CTTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTCGCTATATTCAATCTGCTCCACTGCA
ACTTTAAGGAGATAAGATTTGTAACTTGTAG
Found at i:25018792 original size:191 final size:191
Alignment explanation
Indices: 25018430--25018898 Score: 611
Period size: 191 Copynumber: 2.5 Consensus size: 191
25018420 ATAAGGTTCA
* * * * *
25018430 CTTTAATCTGCTCCACTGCAATTTTAAGGAGATAAGATTCG-TAACTTCAATCTGCTCTATTGCA
1 CTTTAATCTGTTCCACTGCAACTTTAGGGAGATAAGATTCGCTTA-TTCAATCTGCTCTACTGCA
* * * * * *
25018494 ACTTCAGAGAGATAAGATCTGTAACTTGTCGCTTTAATCTGTTCCACTGTAACTTTAGGGAAATA
65 ACTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATA
** * * * * *
25018559 AGATTCGCTATATTCAATCTGCTCCACTGTAACTTTAAGGAGATAAGATTTTTAACTTGTAG
130 AGATTAACTATATTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTATAG
* * *
25018621 CTTTAATCTGTTCTACTGTAACTTTAGGGAGATAAGATTCGCTGTATTCAATCTGCTCAACTGCA
1 CTTTAATCTGTTCCACTGCAACTTTAGGGAGATAAGATTCGCT-TATTCAATCTGCTCTACTGCA
*
25018686 ACTTCAGGGAGATAAAATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGG-AATA
65 ACTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATA
* * *
25018750 AGATTAACTATATTCAATCTACTTCACTGCAACTTCAAGGAGATAAGGTTTGTGACTTATAG
130 AGATTAACTATATTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTATAG
* * * *
25018812 CTTCAATCTGTTCCACTGCAACTTCAGGG-GAATAAGATTAGCTATATTCAATCTCCTCTACTGC
1 CTTTAATCTGTTCCACTGCAACTTTAGGGAG-ATAAGATTCGCT-TATTCAATCTGCTCTACTGC
*
25018876 AACTTTAGGGAGATAAGATTTGT
64 AACTTCAGGGAGATAAGATTTGT
25018899 GGCTTTAATC
Statistics
Matches: 240, Mismatches: 35, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
190 1 0.00
191 167 0.70
192 71 0.30
193 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (191 bp):
CTTTAATCTGTTCCACTGCAACTTTAGGGAGATAAGATTCGCTTATTCAATCTGCTCTACTGCAA
CTTCAGGGAGATAAGATTTGTAACATGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATAA
GATTAACTATATTCAATCTACTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTATAG
Found at i:25030729 original size:5 final size:5
Alignment explanation
Indices: 25030721--25030747 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
25030711 AAAATAACAC
25030721 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
25030748 AAATGAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:25030758 original size:23 final size:23
Alignment explanation
Indices: 25030708--25030751 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
25030698 TAAAAGGAAT
* *
25030708 AATAAAATAACACAATAAAATAA
1 AATAAAATAAAACAAAAAAATAA
*
25030731 AATAAAATAAAATAAAAAAAT
1 AATAAAATAAAACAAAAAAAT
25030752 GAGATAATAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (23 bp):
AATAAAATAAAACAAAAAAATAA
Found at i:25032155 original size:29 final size:28
Alignment explanation
Indices: 25032102--25032157 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
25032092 TGTAAAATAA
25032102 TTTGGGCCACTGGGCCTTTTGTTTTTGG
1 TTTGGGCCACTGGGCCTTTTGTTTTTGG
*
25032130 TTTGGGCCATTTGGGCCTTCTT-TTTTTG
1 TTTGGGCCA-CTGGGCCTT-TTGTTTTTG
25032158 TAATTGGACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 9 0.36
29 14 0.56
30 2 0.08
ACGTcount: A:0.04, C:0.18, G:0.29, T:0.50
Consensus pattern (28 bp):
TTTGGGCCACTGGGCCTTTTGTTTTTGG
Found at i:25033463 original size:11 final size:12
Alignment explanation
Indices: 25033434--25033476 Score: 54
Period size: 11 Copynumber: 3.7 Consensus size: 12
25033424 TTTCTATACA
*
25033434 AAAATCTTATAAT
1 AAAATATTAT-AT
25033447 AAAATATTATA-
1 AAAATATTATAT
25033458 AAAATATTA-AT
1 AAAATATTATAT
25033469 AAAATATT
1 AAAATATT
25033477 TTAACCAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 1 0.04
11 17 0.61
12 1 0.04
13 9 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (12 bp):
AAAATATTATAT
Found at i:25034383 original size:21 final size:21
Alignment explanation
Indices: 25034358--25034403 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
25034348 GATTAAGCAT
25034358 TATTATATAATGTAATAAT-TA
1 TATTATATAAT-TAATAATATA
* *
25034379 TATTATATTATTAATAGTATA
1 TATTATATAATTAATAATATA
25034400 TATT
1 TATT
25034404 TATTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
TATTATATAATTAATAATATA
Found at i:25034469 original size:24 final size:24
Alignment explanation
Indices: 25034436--25034496 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
25034426 ATACTAATTT
25034436 AGTATATTGGTTTAAGGTAAAATAA
1 AGTA-ATTGGTTTAAGGTAAAATAA
*
25034461 AGTAATTGGTCTAAGGTAAAATAA
1 AGTAATTGGTTTAAGGTAAAATAA
*
25034485 AGTAATCGGTTT
1 AGTAATTGGTTT
25034497 CATTTTTGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 29 0.88
25 4 0.12
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.34
Consensus pattern (24 bp):
AGTAATTGGTTTAAGGTAAAATAA
Found at i:25040066 original size:2 final size:2
Alignment explanation
Indices: 25040037--25040089 Score: 67
Period size: 2 Copynumber: 28.0 Consensus size: 2
25040027 GGAATTCTTT
* *
25040037 TA TA TA TG TA T- TA T- TA TT TA TA -A TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25040076 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
25040090 AACATGAGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:25041812 original size:42 final size:42
Alignment explanation
Indices: 25041745--25041827 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
25041735 AAGATACTTA
* *
25041745 GGTTTTGGGAGTGGAGTCTTTGGATGTGGAGGATGAGGCTTG
1 GGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGGCTTG
*
25041787 GGTTTTGGGAGTGGAGTATTCGGATGTGGGGGATGAGGCTT
1 GGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGGCTT
25041828 AGGATAAGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.14, C:0.05, G:0.48, T:0.33
Consensus pattern (42 bp):
GGTTTTGGGAGTGGAGTATTCGGATGTGGAGGATGAGGCTTG
Found at i:25041945 original size:96 final size:96
Alignment explanation
Indices: 25041861--25042084 Score: 256
Period size: 96 Copynumber: 2.3 Consensus size: 96
25041851 TGGGATGTGA
* * *
25041861 TGGTGGTGGAGGGGACTTGTAGACATAAGGTGCAGG-TGGGGAGCGAACTGGTGGGGGTGGAGAT
1 TGGTGGTGGAGGGGACTTGTAGACATAAGGAG-AGGATGGGGAACGAACTGGTGGGGGTGGAGAC
* *
25041925 TTATGGACATATGG-AGGAGGTGGGGAGTGGAT
65 TTATAGACATATGGTA-GAGGTGGGGAGTGGAC
* * * * * * * *
25041957 TGGTGGTGGTGGAGACTTGT-GAATATAAGGAGGGGATGGTGAATGAATTGGTGGTGGTGGAGAC
1 TGGTGGTGGAGGGGACTTGTAG-ACATAAGGAGAGGATGGGGAACGAACTGGTGGGGGTGGAGAC
* *
25042021 TTGTAGATATATGGTAGAGGTGGGGAGTGGAC
65 TTATAGACATATGGTAGAGGTGGGGAGTGGAC
*
25042053 TGGTGGTGGAGGGGACTTGTAGACATATGGAG
1 TGGTGGTGGAGGGGACTTGTAGACATAAGGAG
25042085 GAGGTGGAGA
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
95 3 0.03
96 100 0.95
97 2 0.02
ACGTcount: A:0.23, C:0.05, G:0.48, T:0.25
Consensus pattern (96 bp):
TGGTGGTGGAGGGGACTTGTAGACATAAGGAGAGGATGGGGAACGAACTGGTGGGGGTGGAGACT
TATAGACATATGGTAGAGGTGGGGAGTGGAC
Found at i:25041989 original size:48 final size:49
Alignment explanation
Indices: 25041861--25042091 Score: 197
Period size: 48 Copynumber: 4.8 Consensus size: 49
25041851 TGGGATGTGA
* * * * * *
25041861 TGGTGGTGGAGGGGACTTGT-AGACATAAGGTGCAGGTGGGGAGCGAAC
1 TGGTGGTGGTGGAGACTTGTGAGATATAAGGAGGAGGTGGGGAGTGAAC
* * * * * * *
25041909 TGGTGGGGGTGGAGATTTATG-GACATATGGAGGAGGTGGGGAGTGGAT
1 TGGTGGTGGTGGAGACTTGTGAGATATAAGGAGGAGGTGGGGAGTGAAC
* * *
25041957 TGGTGGTGGTGGAGACTTGTGA-ATATAAGGAGG-GGATGGTGAATGAAT
1 TGGTGGTGGTGGAGACTTGTGAGATATAAGGAGGAGG-TGGGGAGTGAAC
* *
25042005 TGGTGGTGGTGGAGACTTGT-AGATATATGGTA-GAGGTGGGGAGTGGAC
1 TGGTGGTGGTGGAGACTTGTGAGATATAAGG-AGGAGGTGGGGAGTGAAC
* * * *
25042053 TGGTGGTGGAGGGGACTTGT-AGACATATGGAGGAGGTGG
1 TGGTGGTGGTGGAGACTTGTGAGATATAAGGAGGAGGTGG
25042092 AGACTTGTAA
Statistics
Matches: 149, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
47 4 0.03
48 142 0.95
49 3 0.02
ACGTcount: A:0.23, C:0.05, G:0.48, T:0.24
Consensus pattern (49 bp):
TGGTGGTGGTGGAGACTTGTGAGATATAAGGAGGAGGTGGGGAGTGAAC
Found at i:25042091 original size:75 final size:75
Alignment explanation
Indices: 25042012--25042166 Score: 195
Period size: 75 Copynumber: 2.1 Consensus size: 75
25042002 AATTGGTGGT
* * * * *
25042012 GGTGGAGACTTGTAGATATATGGTA-GAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTAGA
1 GGTGGAGACTTGTAAATATAAGG-AGGAGGTGGGGAATGGACTGGTGGGGGAGGAGACTTGTAGA
25042076 CATATGGAGGA
65 CATATGGAGGA
* * * * * *
25042087 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGGGGTGGAGATTTGTGGAC
1 GGTGGAGACTTGTAAATATAAGGAGGAGGTGGGGAATGGACTGGTGGGGGAGGAGACTTGTAGAC
25042152 ATATGGAGGA
66 ATATGGAGGA
25042162 GGTGG
1 GGTGG
25042167 GGAGTGGACT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
74 1 0.01
75 67 0.99
ACGTcount: A:0.23, C:0.05, G:0.48, T:0.24
Consensus pattern (75 bp):
GGTGGAGACTTGTAAATATAAGGAGGAGGTGGGGAATGGACTGGTGGGGGAGGAGACTTGTAGAC
ATATGGAGGA
Found at i:25042093 original size:123 final size:123
Alignment explanation
Indices: 25041964--25042217 Score: 375
Period size: 123 Copynumber: 2.1 Consensus size: 123
25041954 GATTGGTGGT
* * * *
25041964 GGTGGAGACTTGTGAATATAAGGAGGGGATGGTGAATGAATTGGTGGTGGTGGAGACTTGTAGAT
1 GGTGGAGACTTGTAAATATAAGGAGGGGATGGTGAATGAACTGGTGGGGGTGGAGACTTGTAGAC
*
25042029 ATATGGTA-GAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTAGACATATGGAGGA
66 ATATGG-AGGAGGTGGGGAGTGGACTGGTGGTGGAGGAGACTTGTAGACATATGGAGGA
* * * * *
25042087 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGGGGTGGAGATTTGTGGAC
1 GGTGGAGACTTGTAAATATAAGGAGGGGATGGTGAATGAACTGGTGGGGGTGGAGACTTGTAGAC
* * *
25042152 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTTGTAGATATATGGTGGA
66 ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGAGGAGACTTGTAGACATATGGAGGA
25042210 GGTGGAGA
1 GGTGGAGA
25042218 ATGGATTGGT
Statistics
Matches: 117, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
122 1 0.01
123 116 0.99
ACGTcount: A:0.24, C:0.04, G:0.48, T:0.25
Consensus pattern (123 bp):
GGTGGAGACTTGTAAATATAAGGAGGGGATGGTGAATGAACTGGTGGGGGTGGAGACTTGTAGAC
ATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGAGGAGACTTGTAGACATATGGAGGA
Found at i:25042139 original size:48 final size:48
Alignment explanation
Indices: 25042087--25044013 Score: 1796
Period size: 48 Copynumber: 40.3 Consensus size: 48
25042077 ATATGGAGGA
* ** * * * * *
25042087 GGTGGAGACTTGTAAATGTAAGGAGGGGGTGGTGAATGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25042135 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * * *
25042183 GGTGGAGACTTGTAGATATATGGTGGAGGTGGAGAATGGATTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * * * *
25042231 GGTGGAGACTTATAAACATATGGTGGAGGTAGGGAGTGAACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25042279 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGTACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * * ** * * * * *
25042327 AGTGGGGACTTATGGATGTAAGGTGGTGGTGGTGAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25042375 GGTGGAGACTTGTAGACAGATGGTGGAGGTGGGGAGTGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25042423 GGTGGAGATTTGT-GTACATATAGAGGAGGTGGGGAGTGGACTGGCGGT
1 GGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *** * * * * *
25042471 GGTGGGGACTTATATTTATAGGGAGGGGGTGGAGAATGGACTGATGG-
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25042518 GGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25042566 GGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * *
25042614 GGTGGGGACTTGTAGACATATGGAGGAGGAGGAGAGTGGACTGGAGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* **** * * * *
25042662 GGTGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGACTGATGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25042710 GGTGGAGACTTGTAGACATAGGGTGGAGGTGGGGAGTGGACTGGTAGG-
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGT-GGT
* *
25042758 GGTGGAGATTTGT-GTACATATGGAGGAGGTGGGGAGTGGACTGGTGGG
1 GGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25042806 GGTGGAGATTTGT-GTACATATGGAGGAGGTGGGGAGTGGACTGGCGGT
1 GGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *** * * * * *
25042854 GGTGGGGACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25042902 GGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25042950 GGTGGAGACTTGTAAACATATGGTGGAGGT-GGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * *
25042997 GGTGGGGACTTGTAGACATATGGAGGAGGAGGAGAGTGGACTGGAGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* **** * *
25043045 GGTGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAAG-GGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGG-GGAGTGGACTGGTGGT
* *
25043093 GGTGGAGACTTGTAGACATAGGGTGGAGGTGGGGAGTGGACTGGTAGG-
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGT-GGT
* *
25043141 GGTGGAGATTTGT-GTACATATGGAGGAGGT-GGGAGTGGGCTGGTGGT
1 GGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
*** * * * * *
25043188 GGTGG-GACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * *
25043235 GGTCGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGAACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* **** * * * *
25043283 GGAGG-GACTTGTATTTGTAAGGAGGAGGTGGTGAATAGACTGGT-GT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25043329 GGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* ** *
25043377 GGTGGAGATTTGT-GTACATATGGAGGAGGTGATGAGTGGACTGGTGGC
1 GGTGGAGACTTGTAG-ACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *** * * * * *
25043425 GGAGGGGACTTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25043473 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * **** * * * *
25043521 GGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATAGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25043569 GGTGGAGACCTGTAGACATATGGTGGAGGTGGGGAGTGGATTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * **** * * *
25043617 GGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
*
25043665 GGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTGGACTGGTGG-
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * ** *
25043712 GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAATGGACTAATTGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* **** * *** *
25043760 GGAGGAGACTTGTATTTGTAGGGAGGAGGTGATAAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* *
25043808 GGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTGGACTGGTGGG
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * *
25043856 GGTGGAGATTTGTGGACATATGGAGGAGGTGAGGAGTGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * ** * * * * * *
25043904 GGTGGGGACTTATAGATGTAGGGTGGTGGTGGTGAATGGATTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
* * * * ** * * * *
25043952 GGAGGGGACTTATATATGTAAGGAGGTGGTGGAGAATGGACTGGTGGT
1 GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
25044000 GGTGGAGACTTGTA
1 GGTGGAGACTTGTA
25044014 CATGTATGGA
Statistics
Matches: 1498, Mismatches: 360, Indels: 42
0.79 0.19 0.02
Matches are distributed among these distances:
46 25 0.02
47 220 0.15
48 1247 0.83
49 6 0.00
ACGTcount: A:0.21, C:0.05, G:0.49, T:0.25
Consensus pattern (48 bp):
GGTGGAGACTTGTAGACATATGGAGGAGGTGGGGAGTGGACTGGTGGT
Found at i:25042201 original size:171 final size:171
Alignment explanation
Indices: 25041937--25042260 Score: 434
Period size: 171 Copynumber: 1.9 Consensus size: 171
25041927 ATGGACATAT
* * * * *
25041937 GGAGGAGGTGGGGAGTGGATTGGTGGTGGTGGAGACTTGTGAATATAAGGAGGGGATGGTGAATG
1 GGAGGAGGTGGGGAATGGACTGGTGGGGGTGGAGACTTGTGAACATAAGGAGGGGATGGGGAATG
* * * *
25042002 AATTGGTGGTGGTGGAGACTTGTAGATATATGGTAGAGGTGGGGAGTGGACTGGTGGTGGAGGGG
66 AACTGGTGGTGGTGGAGACTTGTAGATATATGGTAGAGGTGGAGAATGGACTGGTGGTGGAGGAG
* *
25042067 ACTTGTAGACATATGGAGGAGGTGGAGACTTGTAAATGTAA
131 ACTTATAAACATATGGAGGAGGTGGAGACTTGTAAATGTAA
* * * * * *
25042108 GGAGGGGGTGGTGAATGGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGG-TGGGGAGT
1 GGAGGAGGTGGGGAATGGACTGGTGGGGGTGGAGACTTGTGAACATAAGGAGG-GGATGGGGAAT
* * * *
25042172 GGACTGGTGGTGGTGGAGACTTGTAGATATATGGTGGAGGTGGAGAATGGATTGGTGGTGGTGGA
65 GAACTGGTGGTGGTGGAGACTTGTAGATATATGGTAGAGGTGGAGAATGGACTGGTGGTGGAGGA
*
25042237 GACTTATAAACATATGGTGGAGGT
130 GACTTATAAACATATGGAGGAGGT
25042261 AGGGAGTGAA
Statistics
Matches: 130, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
171 128 0.98
172 2 0.02
ACGTcount: A:0.23, C:0.04, G:0.48, T:0.25
Consensus pattern (171 bp):
GGAGGAGGTGGGGAATGGACTGGTGGGGGTGGAGACTTGTGAACATAAGGAGGGGATGGGGAATG
AACTGGTGGTGGTGGAGACTTGTAGATATATGGTAGAGGTGGAGAATGGACTGGTGGTGGAGGAG
ACTTATAAACATATGGAGGAGGTGGAGACTTGTAAATGTAA
Found at i:25042206 original size:27 final size:26
Alignment explanation
Indices: 25042176--25042256 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 26
25042166 GGGAGTGGAC
25042176 TGGTGGTGGTGGAGACTTGTAGATATA
1 TGGTGGTGGTGGAGACTTGTAGA-ATA
* *
25042203 TGGTGGAGGTGGAGA-ATG--G-AT-
1 TGGTGGTGGTGGAGACTTGTAGAATA
* *
25042224 TGGTGGTGGTGGAGACTTATAAACATA
1 TGGTGGTGGTGGAGACTTGTAGA-ATA
25042251 TGGTGG
1 TGGTGG
25042257 AGGTAGGGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
21 14 0.33
22 3 0.07
24 1 0.02
26 4 0.10
27 20 0.48
ACGTcount: A:0.23, C:0.04, G:0.43, T:0.30
Consensus pattern (26 bp):
TGGTGGTGGTGGAGACTTGTAGAATA
Found at i:25042254 original size:219 final size:219
Alignment explanation
Indices: 25041907--25042310 Score: 623
Period size: 219 Copynumber: 1.8 Consensus size: 219
25041897 TGGGGAGCGA
*
25041907 ACTGGTGGGGGTGGAGATTTATGGACATATGGAGGAGGTGGGGAGTGGATTGGTGGTGGTGGAGA
1 ACTGGTGGGGGTGGAGATTTATGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGA
* * * *
25041972 CTTGTGAATATAAGGAGGGGATGGTGAATGAATTGGTGGTGGTGGAGACTTGTAGATATATGGTA
66 CTTGTGAATATAAGGAGGGGATGGAGAATGAATTGGTGGTGGTGGAGACTTATAAACATATGGTA
* * * *
25042037 GAGGTGGGGAGTGGACTGGTGGTGGAGGGGACTTGTAGACATATGGAGGAGGTGGAGACTTGTAA
131 GAGGTAGGGAGTGAACTGGTGGGGGAGGAGACTTGTAGACATATGGAGGAGGTGGAGACTTGTAA
25042102 ATGTAAGGAGGGGGTGGTGAATGG
196 ATGTAAGGAGGGGGTGGTGAATGG
*
25042126 ACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGA
1 ACTGGTGGGGGTGGAGATTTATGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGA
* * *
25042191 CTTGT-AGATATATGGTGGAGG-TGGAGAATGGATTGGTGGTGGTGGAGACTTATAAACATATGG
66 CTTGTGA-ATATAAGGAGG-GGATGGAGAATGAATTGGTGGTGGTGGAGACTTATAAACATATGG
* * * *
25042254 TGGAGGTAGGGAGTGAACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGG
129 TAGAGGTAGGGAGTGAACTGGTGGGGGAGGAGACTTGTAGACATATGGAGGAGGTGG
25042311 GGAGTGTACT
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
218 1 0.01
219 163 0.98
220 2 0.01
ACGTcount: A:0.23, C:0.04, G:0.48, T:0.25
Consensus pattern (219 bp):
ACTGGTGGGGGTGGAGATTTATGGACATATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGA
CTTGTGAATATAAGGAGGGGATGGAGAATGAATTGGTGGTGGTGGAGACTTATAAACATATGGTA
GAGGTAGGGAGTGAACTGGTGGGGGAGGAGACTTGTAGACATATGGAGGAGGTGGAGACTTGTAA
ATGTAAGGAGGGGGTGGTGAATGG
Found at i:25042570 original size:21 final size:21
Alignment explanation
Indices: 25042545--25042621 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 21
25042535 ATATGGAGGA
25042545 GGTGGGGAGTGGACTGGTGGT
1 GGTGGGGAGTGGACTGGTGGT
* ** *
25042566 GGTGGAGACTTGTAAACATATGGTGGA
1 GGTGGGGA---GTGGAC---TGGTGGT
25042593 GGTGGGGAGTGGACTGGTGGT
1 GGTGGGGAGTGGACTGGTGGT
25042614 GGTGGGGA
1 GGTGGGGA
25042622 CTTGTAGACA
Statistics
Matches: 42, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
21 21 0.50
24 8 0.19
27 13 0.31
ACGTcount: A:0.17, C:0.05, G:0.55, T:0.23
Consensus pattern (21 bp):
GGTGGGGAGTGGACTGGTGGT
Found at i:25042788 original size:27 final size:27
Alignment explanation
Indices: 25042758--25042837 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
25042748 GACTGGTAGG
25042758 GGTGGAGATTTGTGTACATATGGAGGA
1 GGTGGAGATTTGTGTACATATGGAGGA
* * * *
25042785 GGTGGGGA---GTGGAC---TGGTGGG
1 GGTGGAGATTTGTGTACATATGGAGGA
25042806 GGTGGAGATTTGTGTACATATGGAGGA
1 GGTGGAGATTTGTGTACATATGGAGGA
25042833 GGTGG
1 GGTGG
25042838 GGAGTGGACT
Statistics
Matches: 39, Mismatches: 8, Indels: 12
0.66 0.14 0.20
Matches are distributed among these distances:
21 12 0.31
24 10 0.26
27 17 0.44
ACGTcount: A:0.20, C:0.04, G:0.50, T:0.26
Consensus pattern (27 bp):
GGTGGAGATTTGTGTACATATGGAGGA
Found at i:25043802 original size:383 final size:383
Alignment explanation
Indices: 25042108--25044013 Score: 2063
Period size: 383 Copynumber: 5.0 Consensus size: 383
25042098 GTAAATGTAA
* *
25042108 GGAGGGGGTGGTGAATGGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTG
1 GGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTG
* * * * *
25042173 GACTGGTGGTGGTGGAGACTTGTAGATATATGGTGGAGGTGGAGAATGGATTGGTGGTGGTGGAG
66 GACTGGTGGTGGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGTGGTGGAG
* * * * * * * * **** *
25042238 ACTTATAAACATATGGTGGAGGTAGGGAGTGAACTGGTGGGGGTGGAGATTTGTGGACATATGGA
131 ACTTGTAGACATATGGAGGAGGT-GAGAGTGGACTGGTGGTGGTGGGGACTTGTATTTATAGGGA
* * * * * ** * * * *
25042303 GGAGGTGGGGAGTGTACTGGTGGTAGTGGGGACTTATGGATGTAAGGTGGTGGTGGTGAATGGAC
195 GGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTGGACATAGGGTGGAGGTGGGGAGTGGAC
* * * *
25042368 TGGTGGTGGTGGAGACTTGTAGACAG-ATGGTGGAGGTGGGGAGTGGACTGGTGGGGGTGGAGAT
260 TGGTGGTGGTGGAGACTTGTATAC-GTATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGAC
* *
25042432 TTGTGTACATATAGAGGAGGTGGGGAGTGGACTGGCGGTGGTGGGGACTTATATTTATAG
324 TTGTGTACATATGGAGGAGGTGGGGAGTGGACTGGCGGTGGTGGGGACTTGTATTTATAG
*
25042492 GGAGGGGGTGGAGAATGGACTGAT-GGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTG
1 GGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTG
*
25042556 GACTGGTGGTGGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGTGGTGGGG
66 GACTGGTGGTGGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGTGGTGGAG
* * *
25042621 ACTTGTAGACATATGGAGGAGGAGGAGAGTGGACTGGAGGTGGTGGGGACTTGTATTTGTAGGGA
131 ACTTGTAGACATATGGAGGAGG-TGAGAGTGGACTGGTGGTGGTGGGGACTTGTATTTATAGGGA
* * *
25042686 GGAGGTGGTGAATGGACTGATGGTGGTGGAGACTTGTAGACATAGGGTGGAGGTGGGGAGTGGAC
195 GGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTGGACATAGGGTGGAGGTGGGGAGTGGAC
* * * * *
25042751 TGGTAGG-GGTGGAGATTTGTGTACATATGGAGGAGGTGGGGAGTGGACTGGTGGGGGTGGAGAT
260 TGGT-GGTGGTGGAGACTTGTATACGTATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGAC
25042815 TTGTGTACATATGGAGGAGGTGGGGAGTGGACTGGCGGTGGTGGGGACTTGTATTTATAG
324 TTGTGTACATATGGAGGAGGTGGGGAGTGGACTGGCGGTGGTGGGGACTTGTATTTATAG
25042875 GGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTG
1 GGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTG
*
25042940 GACTGGTGGTGGTGGAGACTTGTAAACATATGGTGGAGGT-GGGAGTGGACTGGTGGTGGTGGGG
66 GACTGGTGGTGGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGTGGTGGAG
* * *
25043004 ACTTGTAGACATATGGAGGAGGAGGAGAGTGGACTGGAGGTGGTGGGGACTTGTATTTGTAGGGA
131 ACTTGTAGACATATGGAGGAGG-TGAGAGTGGACTGGTGGTGGTGGGGACTTGTATTTATAGGGA
* * *
25043069 GGAGGTGGTGAAGGGACTGGTGGTGGTGGAGACTTGTAGACATAGGGTGGAGGTGGGGAGTGGAC
195 GGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTGGACATAGGGTGGAGGTGGGGAGTGGAC
* * * *
25043134 TGGTAGG-GGTGGAGATTTGTGTACATATGGAGGAGGT-GGGAGTGGGCTGGTGGTGGTGG-GAC
260 TGGT-GGTGGTGGAGACTTGTATACGTATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGAC
* ** * * * * * * * * * **** *
25043196 TTGTATTTATAGGGAGGGGGTGGAGAATGGACTGGTGGGGGTCGAGATTTGTGGACATAT
324 TTGTGTACATATGGAGGAGGTGGGGAGTGGACTGGCGGTGGTGGGGACTTGTATTTATAG
* * * * * * * *** * * * * *
25043256 GGAGGAGGTGGGGAGTGAACTGGTGGTGGAGG-GACTTGTATTTGTAAGGAGGAGGTGGTGAATA
1 GGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTG
*
25043320 GACTGGT-GTGGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGGGGTGGAG
66 GACTGGTGGTGGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGTGGTGGAG
* * *
25043384 ATTTGT-GTACATATGGAGGAGGTGATGAGTGGACTGGTGGCGGAGGGGACTTGTATTTATAGGG
131 ACTTGTAG-ACATATGGAGGAGGTGA-GAGTGGACTGGTGGTGGTGGGGACTTGTATTTATAGGG
* * * * * *
25043448 AGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAGTGGA
194 AGGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTGGACATAGGGTGGAGGTGGGGAGTGGA
* * * ** * * * *
25043513 TTGGTGGTGGAGGGGACTTGTATTTGTAGGGAGGAGGTGGTGAATAGACTGGTGGTGGTGGAGAC
259 CTGGTGGTGGTGGAGACTTGTATACGTATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGAC
* * * * * *
25043578 CTGTAG-ACATATGGTGGAGGTGGGGAGTGGATTGGTGGTGGAGGGGACTTGTATTTGTAG
324 TTGT-GTACATATGGAGGAGGTGGGGAGTGGACTGGCGGTGGTGGGGACTTGTATTTATAG
* * * * * * *
25043638 GGAGGAGGTGGTGAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGGTGGAGGTGGGGAGTG
1 GGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTG
* ** * * ** * *
25043703 GACTGGTGG-GGTGGAGATTTGTGGACATATGGAGGAGGTGGGGAATGGACTAATTGTGGAGGAG
66 GACTGGTGGTGGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGTGGTGGAG
**** * * * * *** * *
25043767 ACTTGTATTTGTAGGGAGGAGGTGATAAATGGACTGGTGGTGGTGGAGACTTGTAGACATATGGT
131 ACTTGTAGACATATGGAGGAGGTGA-GAGTGGACTGGTGGTGGTGGGGACTTGTATTTATAGGGA
* * * * * *
25043832 GGAGGTGGGGAGTGGACTGGTGGGGGTGGAGATTTGTGGACATATGGAGGAGGTGAGGAGTGGAC
195 GGAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTGGACATAGGGTGGAGGTGGGGAGTGGAC
* * * * * * * * * * * *
25043897 TGGTGGTGGTGGGGACTTATAGATGTAGGGTGGTGGTGGTGAATGGATTGGTGGTGGAGGGGACT
260 TGGTGGTGGTGGAGACTTGTATACGTATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACT
* * ** * * * * * *
25043962 TATATATGTAAGGAGGTGGTGGAGAATGGACTGGTGGTGGTGGAGACTTGTA
325 TGTGTACATATGGAGGAGGTGGGGAGTGGACTGGCGGTGGTGGGGACTTGTA
25044014 CATGTATGGA
Statistics
Matches: 1306, Mismatches: 201, Indels: 31
0.85 0.13 0.02
Matches are distributed among these distances:
379 37 0.03
380 188 0.14
381 89 0.07
382 89 0.07
383 798 0.61
384 105 0.08
ACGTcount: A:0.21, C:0.05, G:0.49, T:0.25
Consensus pattern (383 bp):
GGAGGGGGTGGAGAATGGACTGGTGGGGGTGGAGATTTGTGGATATATGGAGGAGGTGGGGAGTG
GACTGGTGGTGGTGGAGACTTGTAAACATATGGTGGAGGTGGGGAGTGGACTGGTGGTGGTGGAG
ACTTGTAGACATATGGAGGAGGTGAGAGTGGACTGGTGGTGGTGGGGACTTGTATTTATAGGGAG
GAGGTGGGGAATGGACTGGTGGTGGTGGAGACTTGTGGACATAGGGTGGAGGTGGGGAGTGGACT
GGTGGTGGTGGAGACTTGTATACGTATGGAGGAGGTGGGGAGTGGACTGGTGGTGGTGGAGACTT
GTGTACATATGGAGGAGGTGGGGAGTGGACTGGCGGTGGTGGGGACTTGTATTTATAG
Found at i:25043852 original size:21 final size:21
Alignment explanation
Indices: 25043828--25043911 Score: 69
Period size: 21 Copynumber: 3.7 Consensus size: 21
25043818 TGTAGACATA
25043828 TGGTGGAGGTGGGGAGTGGAC
1 TGGTGGAGGTGGGGAGTGGAC
* *
25043849 TGGTGGGGGTGGAGATTTGTGGAC
1 TGGTGGAGGTGGGGA---GTGGAC
* *
25043873 ATATGGAGGAGGTGAGGAGTGGAC
1 ---TGGTGGAGGTGGGGAGTGGAC
*
25043897 TGGTGGTGGTGGGGA
1 TGGTGGAGGTGGGGA
25043912 CTTATAGATG
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
21 25 0.52
24 12 0.25
27 11 0.23
ACGTcount: A:0.17, C:0.04, G:0.57, T:0.23
Consensus pattern (21 bp):
TGGTGGAGGTGGGGAGTGGAC
Found at i:25044943 original size:1 final size:1
Alignment explanation
Indices: 25044937--25044963 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
25044927 ATGAGTCGTG
25044937 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
25044964 ACAGTTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:25046348 original size:25 final size:27
Alignment explanation
Indices: 25046320--25046369 Score: 70
Period size: 25 Copynumber: 1.9 Consensus size: 27
25046310 TTGCAGTGGA
25046320 AAATT-TTCAGATTG-TTTA-ATTATGT
1 AAATTATTC-GATTGATTTATATTATGT
25046345 AAATTATTCGATTGATTTATATTAT
1 AAATTATTCGATTGATTTATATTAT
25046370 TAGAAATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 10 0.45
26 7 0.32
27 5 0.23
ACGTcount: A:0.34, C:0.04, G:0.10, T:0.52
Consensus pattern (27 bp):
AAATTATTCGATTGATTTATATTATGT
Found at i:25048041 original size:29 final size:30
Alignment explanation
Indices: 25047996--25048055 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 30
25047986 CAATAGTGAT
25047996 AACAATGAAAGGTATAATAATAATAATAGC
1 AACAATGAAAGGTATAATAATAATAATAGC
* *
25048026 AACAATGCAAAGATAATGATAATAATAATA
1 AACAATG-AAAGGT-ATAATAATAATAATA
25048056 AAAAACATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 7 0.27
31 5 0.19
32 14 0.54
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.23
Consensus pattern (30 bp):
AACAATGAAAGGTATAATAATAATAATAGC
Found at i:25048151 original size:25 final size:23
Alignment explanation
Indices: 25048118--25048203 Score: 84
Period size: 25 Copynumber: 3.6 Consensus size: 23
25048108 TATATACATA
* *
25048118 ATATGTACATGATATGTAAAAATAT
1 ATATATACAT-ATATAT-AAAATAT
25048143 ATATATACATCATATATTAAAATAT
1 ATATATACAT-ATATA-TAAAATAT
* *
25048168 AGATATA-ATATACATAAAATAT
1 ATATATACATATATATAAAATAT
*
25048190 ATATATATATATAT
1 ATATATACATATAT
25048204 GTTTAAAAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
22 14 0.27
23 9 0.17
24 2 0.04
25 26 0.50
26 1 0.02
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (23 bp):
ATATATACATATATATAAAATAT
Found at i:25048211 original size:25 final size:23
Alignment explanation
Indices: 25048136--25048203 Score: 86
Period size: 22 Copynumber: 3.0 Consensus size: 23
25048126 ATGATATGTA
25048136 AAAATATATATATACATCATATATT
1 AAAATATATATATA-AT-ATATATT
* *
25048161 AAAATATAGATATAATATACA-T
1 AAAATATATATATAATATATATT
25048183 AAAATATATATAT-ATATATAT
1 AAAATATATATATAATATATAT
25048204 GTTTAAAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
21 6 0.16
22 13 0.34
23 4 0.11
24 2 0.05
25 13 0.34
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.38
Consensus pattern (23 bp):
AAAATATATATATAATATATATT
Found at i:25048361 original size:2 final size:2
Alignment explanation
Indices: 25048354--25048388 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
25048344 TACTTATAAC
25048354 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25048389 AGTATTAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:25050140 original size:43 final size:42
Alignment explanation
Indices: 25050006--25050481 Score: 347
Period size: 43 Copynumber: 11.1 Consensus size: 42
25049996 TCGATCTTTT
* * * *
25050006 CCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTA
1 CCCTACTGCTTAGGG-GTTAAGGTCTATAAATTTAGCCTGTTA
* *** * *
25050049 CCCTACTGCTTAGGGGTTTAAGGTCCATTGCCTTT-GATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGGTCTA-TAAATTTAG-CCTGTTA
* * * *
25050093 CCCTACTGCTCAGGGTGATAAGATCTGTAAATTTAGCCTGTTA
1 CCCTACTGCTTAGGG-GTTAAGGTCTATAAATTTAGCCTGTTA
* *
25050136 CCCTATTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTA
1 CCCTACTGCTTAGGGG-TTAAGGTCTATAAATTTAGCCTGTTA
* * * * * *
25050179 CCCTACTGCTTAGGGGTTTAAGGCCCAT-CATCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGGTCTATAAAT-TTAG-CCTGTTA
25050223 CCCTACTGCTTAGGGGGTT-AGGATCTATAAATTTAGCCTGTTA
1 CCCTACTGCTTA-GGGGTTAAGG-TCTATAAATTTAGCCTGTTA
* *
25050266 CCCTACTACTTAGGGGTTAAGGTCTATAAATTCAGCCTGTTA
1 CCCTACTGCTTAGGGGTTAAGGTCTATAAATTTAGCCTGTTA
* * * * * *
25050308 CCCTACTGCTTAGGGGTTTAAGGCCCAT-CATATTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGGTCTATAAAT-TTAG-CCTGTTA
* * * *
25050352 CCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGCCTGTTA
1 CCCTACTGCTTA-GGGGTTAAGGTCTATAAATTTAGCCTGTTA
* * * * * *
25050395 CCCTACTGCTTAGGGGTTTAAGGCCCATCACA-TTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGGTCTAT-AAATTTAG-CCTGTTA
* *
25050439 CCCTACTGC---GGAGGTTAAGATCTATAAATTCAGCCTGTTA
1 CCCTACTGCTTAGG-GGTTAAGGTCTATAAATTTAGCCTGTTA
25050479 CCC
1 CCC
25050482 CCTAAGCCTG
Statistics
Matches: 333, Mismatches: 78, Indels: 47
0.73 0.17 0.10
Matches are distributed among these distances:
40 10 0.03
41 12 0.04
42 52 0.16
43 151 0.45
44 95 0.29
45 13 0.04
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.35
Consensus pattern (42 bp):
CCCTACTGCTTAGGGGTTAAGGTCTATAAATTTAGCCTGTTA
Found at i:25050149 original size:87 final size:85
Alignment explanation
Indices: 25049998--25050681 Score: 580
Period size: 87 Copynumber: 7.8 Consensus size: 85
25049988 TTATAGCTTC
* *
25049998 GATCT-TTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAG
*
25050062 GGGTTTAAGGTCCATTGCCTTT
66 GGGTTTAAGGTCCA-T-CATTT
* * * * *
25050084 GATCTGTTTCCCTACTGCTCAGGGTGATAAGATCTGTAAATTTAGCCTGTTACCCTATTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAG
* * *
25050149 GGGTTTAAGGTCTATAAATT
66 GGGTTTAAGGTCCATCATTT
* * * ** * ** * *
25050169 CAGCCTGTTACCCTACTGCTTAGGG-GTTTAAGGCCCATCATCTTC-GATCTGTTTCCCTACTGC
1 GA-TCTGTTTCCCTACTGCTTAGGGTG-TTAAGATCTAT-AAATTCAG-CCTGTTACCCTACTGC
* * *
25050232 TTAGGGGGTT-AGGATCTATAAATTT
62 TTAGGGGTTTAAGG-TCCAT-CATTT
* * * *
25050257 -AGCCTGTTACCCTACTACTTAGGG-GTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTA
1 GA-TCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTA
*
25050320 GGGGTTTAAGGCCCATCATATT
65 GGGGTTTAAGGTCCATCAT-TT
* * *
25050342 CGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTTA
1 -GATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTA
* *
25050407 GGGGTTTAAGGCCCATCACATTC
65 GGGGTTTAAGGTCCAT--CATTT
25050430 GATCTGTTTCCCTACTGC---GGAG-GTTAAGATCTATAAATTCAGCCTGTTACCCCCTAAGCCT
1 GATCTGTTTCCCTACTGCTTAGG-GTGTTAAGATCTATAAATTCAGCCTGTTA--CCCT-A--CT
* *
25050491 GTTACCCTACTGCTTAGGGTTTAAGGCCCATCATTTT
60 G----CTTA--G----GGGTTTAAGGTCCATCA-TTT
* * *
25050528 CAATCTGTTTCCCTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTA
1 -GATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTA
* * *
25050592 AGGGTTTAAGGCCCATCACATTC
65 GGGGTTTAAGGTCCAT--CATTT
* * * *
25050615 GATTTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
1 GATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAG
25050680 GG
66 GG
25050682 AGATAAGGCT
Statistics
Matches: 502, Mismatches: 57, Indels: 77
0.79 0.09 0.12
Matches are distributed among these distances:
84 29 0.06
85 37 0.07
86 107 0.21
87 237 0.47
88 7 0.01
89 6 0.01
92 3 0.01
93 3 0.01
95 1 0.00
96 3 0.01
97 2 0.00
98 3 0.01
99 36 0.07
101 26 0.05
102 2 0.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.35
Consensus pattern (85 bp):
GATCTGTTTCCCTACTGCTTAGGGTGTTAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAG
GGGTTTAAGGTCCATCATTT
Found at i:25050336 original size:129 final size:129
Alignment explanation
Indices: 25050006--25050681 Score: 690
Period size: 129 Copynumber: 5.1 Consensus size: 129
25049996 TCGATCTTTT
* * *
25050006 CCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
1 CCCTACTGCTTAGGG-GTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
* ** * * * *
25050071 GTCCATTGCCTTTGATCTGTTTCCCTACTGCTCAGGGTGATAAGATCTGTAAATTTAGCCTGTTA
65 GCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTA
*
25050136 CCCTATTGCTTAGGGGTTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
1 CCCTACTGCTTAGGGG-TTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
* * *
25050201 GCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAGGATCTATAAATTTAGCCTGTTA
65 GCCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTA
*
25050266 CCCTACTACTTAGGGGTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 CCCTACTGCTTAGGGGTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
** * *
25050331 CCCATCATATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGCCTGTTA
66 CCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTA
* * * * * ** *
25050395 CCCTACTGCTTAGGGGTTTAAGGCCCATCACATTC-GATCTGTTTCCCTACTGCGGAGGTTAAGA
1 CCCTACTGCTTAGGGG-TTAAGGTCTAT-AAATTCAG-CCTGTTACCCTACTGCTTAGG----GG
* ** * ** * * * * ** ** *
25050459 TCTATAAATTCAGCCTGTTACCCCCTAAGCCTGTTACCCTACTGCTTA-GGGTTTAAGGCCCATC
59 T-T-T-AA---GGCCCATCACCTTC-GA-TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTA
* ** *
25050523 ATTTTCAATCTGTTT
116 AATTT-AGCCTGTTA
* * * *
25050538 CCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAAGGGTTTAAGG
1 CCCTACTGCTTAGGGGTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
* * * *
25050603 CCCATCACATTCGATTTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTA
66 CCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTA
25050667 CCCTACTGCTTAGGG
1 CCCTACTGCTTAGGG
25050682 AGATAAGGCT
Statistics
Matches: 439, Mismatches: 88, Indels: 39
0.78 0.16 0.07
Matches are distributed among these distances:
129 160 0.36
130 152 0.35
131 29 0.07
134 2 0.00
135 3 0.01
136 2 0.00
137 3 0.01
138 2 0.00
141 26 0.06
142 21 0.05
143 39 0.09
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.35
Consensus pattern (129 bp):
CCCTACTGCTTAGGGGTTAAGGTCTATAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG
CCCATCACCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTA
Found at i:25050550 original size:43 final size:43
Alignment explanation
Indices: 25050489--25050638 Score: 142
Period size: 43 Copynumber: 3.5 Consensus size: 43
25050479 CCCCCTAAGC
*
25050489 CTGTTACCCTACTGCTTAGGGTTTAAGGCCCATCATTTTCAAT
1 CTGTTACCCTACTGCTTAGGGTTTAAGGCCCATCAATTTCAAT
* * ** ** * **
25050532 CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATTT-AGC
1 CTGTTACCCTACTGCTTAGGGTTTAAGGCCCATCAATTTCAAT
*
25050574 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACA-TTCGAT
1 CTGTTACCCTACTGCTT-AGGGTTTAAGGCCCATCA-ATTTCAAT
* * *
25050618 TTGTTTCCCTACTACTTAGGG
1 CTGTTACCCTACTGCTTAGGG
25050639 GGTTAAGATC
Statistics
Matches: 81, Mismatches: 23, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
42 17 0.21
43 49 0.60
44 15 0.19
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGTTTAAGGCCCATCAATTTCAAT
Found at i:25050613 original size:185 final size:188
Alignment explanation
Indices: 25050299--25050669 Score: 622
Period size: 185 Copynumber: 2.0 Consensus size: 188
25050289 CTATAAATTC
*
25050299 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATATTCGATCTGTTTCCCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATATTCAATCTGTTTCCCTACTGCTTA
* *
25050364 GGGGGTTAAGATTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACATT
66 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
*
25050429 CGATCTGTTTCCCTACTGC-GGAGGTTAAGATCTATAAATTCAGCCTGTTACCCCCTA
131 CGATCTGTTTCCCTACTACTGGAGGTTAAGATCTATAAATTCAGCCTGTTACCCCCTA
*
25050486 AGCCTGTTACCCTACTGCTTA-GGGTTTAAGGCCCATCATTTTCAATCTGTTTCCCTACTGCTTA
1 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATATTCAATCTGTTTCCCTACTGCTTA
*
25050550 -GGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
66 GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
* * *
25050614 CGATTTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCC
131 CGATCTGTTTCCCTACTAC-T-GGAGGTTAAGATCTATAAATTCAGCCTGTTACCC
25050670 TACTGCTTAG
Statistics
Matches: 172, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
185 78 0.45
186 41 0.24
187 21 0.12
188 32 0.19
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.34
Consensus pattern (188 bp):
AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATATTCAATCTGTTTCCCTACTGCTTA
GGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATT
CGATCTGTTTCCCTACTACTGGAGGTTAAGATCTATAAATTCAGCCTGTTACCCCCTA
Found at i:25050679 original size:43 final size:43
Alignment explanation
Indices: 25050532--25050681 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 43
25050522 CATTTTCAAT
* *
25050532 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * ** ** * *
25050574 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-C
* * *
25050618 TTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
25050661 CTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
25050682 AGATAAGGCT
Statistics
Matches: 81, Mismatches: 23, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
42 17 0.21
43 34 0.42
44 30 0.37
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
Found at i:25050690 original size:87 final size:85
Alignment explanation
Indices: 25050486--25050681 Score: 320
Period size: 86 Copynumber: 2.3 Consensus size: 85
25050476 TTACCCCCTA
** *
25050486 AGCCTGTTACCCTACTGCTTAGGGTTTAAGGCCCATCATTTTCAATCTGTTTCCCTACTGCTTAG
1 AGCCTGTTACCCTACTGCTTAGGGTTTAAGGCCCATCACATTCAATCTGTTTCCCTACTACTTAG
*
25050551 GGGTTAAGATCTGTAAATTT
66 GGGTTAAGATCTGTAAATTC
* *
25050571 AGCCTGTTACCCTACTGCTTAAGGGTTTAAGGCCCATCACATTCGATTTGTTTCCCTACTACTTA
1 AGCCTGTTACCCTACTGCTT-AGGGTTTAAGGCCCATCACATTCAATCTGTTTCCCTACTACTTA
25050636 GGGGGTTAAGATCTGTAAATTC
65 -GGGGTTAAGATCTGTAAATTC
25050658 AGCCTGTTACCCTACTGCTTAGGG
1 AGCCTGTTACCCTACTGCTTAGGG
25050682 AGATAAGGCT
Statistics
Matches: 103, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
85 20 0.19
86 43 0.42
87 40 0.39
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.35
Consensus pattern (85 bp):
AGCCTGTTACCCTACTGCTTAGGGTTTAAGGCCCATCACATTCAATCTGTTTCCCTACTACTTAG
GGGTTAAGATCTGTAAATTC
Found at i:25050866 original size:64 final size:64
Alignment explanation
Indices: 25050765--25050888 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
25050755 ATATCTATGT
* *
25050765 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTTCTAAATAAATGTGATGC
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
* * *
25050829 TTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTG
1 TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTG
25050889 TTATGAATGC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (64 bp):
TTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAAATAAATGTGATGC
Found at i:25052699 original size:16 final size:17
Alignment explanation
Indices: 25052678--25052709 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
25052668 ATCTTTCCTC
25052678 TTTTTTTAT-TTTTTTG
1 TTTTTTTATATTTTTTG
25052694 TTTTTTTATATTTTTT
1 TTTTTTTATATTTTTT
25052710 TTGAATTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (17 bp):
TTTTTTTATATTTTTTG
Found at i:25053027 original size:21 final size:21
Alignment explanation
Indices: 25052996--25053043 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
25052986 GGCCATCATA
25052996 AAACTATTAGCATATGCTGTTC
1 AAAC-ATTAGCATATGCTGTTC
*
25053018 AAACATTAGCATATGTTGTTC
1 AAACATTAGCATATGCTGTTC
25053039 AAACA
1 AAACA
25053044 CCTTGCAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
AAACATTAGCATATGCTGTTC
Found at i:25058281 original size:3 final size:3
Alignment explanation
Indices: 25058275--25058328 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
25058265 TCTACTTTAA
* * * * *
25058275 TAT TAT TAT TAT TAT AAT AAT AAT TAT TAT TAC TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
25058323 TAT TAT
1 TAT TAT
25058329 ATATATTAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:25058302 original size:18 final size:17
Alignment explanation
Indices: 25058272--25058336 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 17
25058262 TGTTCTACTT
*
25058272 TAATATTATTATTATTA
1 TAATAATATTATTATTA
25058289 TAATAATAATTATTATTA
1 TAATAAT-ATTATTATTA
* *
25058307 CTATTACTATTATTATTA
1 -TAATAATATTATTATTA
*
25058325 TTATATATATTA
1 TAATA-ATATTA
25058337 GTATATACTC
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
17 9 0.23
18 25 0.64
19 5 0.13
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
TAATAATATTATTATTA
Found at i:25058461 original size:15 final size:15
Alignment explanation
Indices: 25058441--25058484 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25058431 TATATTTCAA
25058441 TATTATTATTATACT
1 TATTATTATTATACT
* **
25058456 TATTATTAATATTGT
1 TATTATTATTATACT
25058471 TATTATTATATATA
1 TATTATTAT-TATA
25058485 TGTTTTAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 20 0.87
16 3 0.13
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (15 bp):
TATTATTATTATACT
Found at i:25058485 original size:18 final size:16
Alignment explanation
Indices: 25058458--25058499 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
25058448 ATTATACTTA
25058458 TTATTA-ATAT-TGTT
1 TTATTATATATATGTT
25058472 ATTATTATATATATGTT
1 -TTATTATATATATGTT
*
25058489 TTAATATATAT
1 TTATTATATAT
25058500 GTATATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 6 0.25
16 14 0.58
17 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
TTATTATATATATGTT
Found at i:25058594 original size:3 final size:3
Alignment explanation
Indices: 25058574--25058642 Score: 113
Period size: 3 Copynumber: 23.0 Consensus size: 3
25058564 TGTATTTCAA
*
25058574 TAT TGT TAT TA- TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
25058619 TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
25058643 ATAATTATAA
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 2 0.03
3 58 0.94
4 2 0.03
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:25058808 original size:11 final size:11
Alignment explanation
Indices: 25058766--25058835 Score: 58
Period size: 11 Copynumber: 6.6 Consensus size: 11
25058756 TATGCTTTGT
25058766 TATA-TACGTA
1 TATATTACGTA
* *
25058776 TATATTATGTG
1 TATATTACGTA
*
25058787 TATTTTA--TA
1 TATATTACGTA
25058796 TATATTACGTA
1 TATATTACGTA
* *
25058807 TATTATTA-TTT
1 TA-TATTACGTA
25058818 TATATTACGTA
1 TATATTACGTA
25058829 TATATTA
1 TATATTA
25058836 AATATCGTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
9 7 0.15
10 9 0.20
11 25 0.54
12 5 0.11
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.54
Consensus pattern (11 bp):
TATATTACGTA
Found at i:25058810 original size:20 final size:22
Alignment explanation
Indices: 25058774--25058835 Score: 76
Period size: 20 Copynumber: 3.0 Consensus size: 22
25058764 GTTATATACG
* *
25058774 TATATATTATGTGTATT-TTA-
1 TATATATTACGTATATTATTAT
25058794 TATATATTACGTATATTATTAT
1 TATATATTACGTATATTATTAT
*
25058816 TTTATATTACGTATA-TATTA
1 TATATATTACGTATATTATTA
25058836 AATATCGTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 15 0.41
21 8 0.22
22 14 0.38
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.56
Consensus pattern (22 bp):
TATATATTACGTATATTATTAT
Found at i:25058831 original size:31 final size:31
Alignment explanation
Indices: 25058766--25058831 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
25058756 TATGCTTTGT
* *
25058766 TATA-TACGTATATATTATGTGTATTTTATA
1 TATATTACGTATATATTATGTGTATATTACA
* *
25058796 TATATTACGTATATTATTAT-TTTATATTACG
1 TATATTACGTATA-TATTATGTGTATATTACA
25058827 TATAT
1 TATAT
25058832 ATTAAATATC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
30 4 0.13
31 20 0.67
32 6 0.20
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.55
Consensus pattern (31 bp):
TATATTACGTATATATTATGTGTATATTACA
Found at i:25058908 original size:16 final size:16
Alignment explanation
Indices: 25058883--25058913 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25058873 ATATCTTTAA
25058883 TATATATTTATGTAAG
1 TATATATTTATGTAAG
*
25058899 TATATCTTTATGTAA
1 TATATATTTATGTAA
25058914 TATTAGTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.52
Consensus pattern (16 bp):
TATATATTTATGTAAG
Found at i:25060925 original size:2 final size:2
Alignment explanation
Indices: 25060918--25060955 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
25060908 GCACTTAAAC
25060918 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25060956 TAGTTGGTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25064309 original size:30 final size:29
Alignment explanation
Indices: 25064250--25064310 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
25064240 GATATCAAAA
*
25064250 TTATATATAAATTTTGATTTTATGTAATT
1 TTATATATAAATTTTGATTTGATGTAATT
25064279 TTATATATGAAATTTTGATTTGAT-TCAATT
1 TTATATAT-AAATTTTGATTTGATGT-AATT
25064309 TT
1 TT
25064311 CCTAAATCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (29 bp):
TTATATATAAATTTTGATTTGATGTAATT
Found at i:25064366 original size:23 final size:23
Alignment explanation
Indices: 25064340--25064385 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
25064330 TATTAAATTA
**
25064340 GCACCATTTTATGTTGATATATG
1 GCACCATTTTACATTGATATATG
*
25064363 GCACCGTTTTACATTGATATATG
1 GCACCATTTTACATTGATATATG
25064386 ACATACATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (23 bp):
GCACCATTTTACATTGATATATG
Found at i:25066276 original size:19 final size:19
Alignment explanation
Indices: 25066240--25066276 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
25066230 GCAAAAAAAT
*
25066240 AAATACTATTAAATTAATA
1 AAATACTATTAAACTAATA
*
25066259 AAATACTATTAAGCTAAT
1 AAATACTATTAAACTAAT
25066277 TATTAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (19 bp):
AAATACTATTAAACTAATA
Found at i:25066323 original size:18 final size:17
Alignment explanation
Indices: 25066284--25066316 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25066274 AATTATTAAA
25066284 TTATTTTTTATAAATAT
1 TTATTTTTTATAAATAT
25066301 TTATTTTTTA-AAATAT
1 TTATTTTTTATAAATAT
25066317 GCTTATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTTTTTATAAATAT
Found at i:25067154 original size:26 final size:26
Alignment explanation
Indices: 25067125--25067176 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
25067115 AATATTAAGA
25067125 TAAATAATATTTATATTTATGATAAT
1 TAAATAATATTTATATTTATGATAAT
*
25067151 TAAATAATATTTATTTTTATGATAAT
1 TAAATAATATTTATATTTATGATAAT
25067177 ATTATTTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (26 bp):
TAAATAATATTTATATTTATGATAAT
Found at i:25067182 original size:21 final size:22
Alignment explanation
Indices: 25067123--25067202 Score: 81
Period size: 26 Copynumber: 3.5 Consensus size: 22
25067113 TAAATATTAA
* *
25067123 GATAAATAATATTTATATTTAT
1 GATAAATATTATTTATCTTTAT
* *
25067145 GATAATTAAATAATATTTATTTTTAT
1 G---A-TAAATATTATTTATCTTTAT
25067171 GAT-AATATTATTTATCTTTAT
1 GATAAATATTATTTATCTTTAT
25067192 GATAAATATTA
1 GATAAATATTA
25067203 AATATTAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.38
22 9 0.18
23 1 0.02
25 1 0.02
26 20 0.40
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (22 bp):
GATAAATATTATTTATCTTTAT
Found at i:25067193 original size:47 final size:49
Alignment explanation
Indices: 25067117--25067249 Score: 137
Period size: 53 Copynumber: 2.7 Consensus size: 49
25067107 ATGAAGTAAA
* * * *
25067117 TATTAAGATAAATAATATTTATATTTATGATAATTAAATA-ATATTTAT
1 TATTAATATAAATATTATTTATCTTTATGATAATTAAATATAAATTTAT
*
25067165 T-TTTATGAT-AATATTATTTATCTTTATGATAAATATTAAATATTAAATTTAT
1 TATTAAT-ATAAATATTATTTATCTTTATGAT--A-ATTAAATA-TAAATTTAT
* *
25067217 TATTAATTTAAATATTATTTATCTTTATCATAA
1 TATTAATATAAATATTATTTATCTTTATGATAA
25067250 GTATTATATT
Statistics
Matches: 69, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
47 22 0.32
48 3 0.04
49 1 0.01
50 9 0.13
51 1 0.01
52 9 0.13
53 24 0.35
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (49 bp):
TATTAATATAAATATTATTTATCTTTATGATAATTAAATATAAATTTAT
Found at i:25067818 original size:17 final size:18
Alignment explanation
Indices: 25067796--25067836 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
25067786 AAAATTTTGT
*
25067796 CTGTTATCAAA-AGGTAA
1 CTGTTATCAAAGAGATAA
25067813 CTGTTA-CAAAGAGATAA
1 CTGTTATCAAAGAGATAA
*
25067830 TTGTTAT
1 CTGTTAT
25067837 AAACCTACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (18 bp):
CTGTTATCAAAGAGATAA
Found at i:25073264 original size:26 final size:26
Alignment explanation
Indices: 25073235--25073342 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
25073225 TGATACAAAT
25073235 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
25073261 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25073287 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
25073313 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25073339 TGAT
1 TGAT
25073343 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:25077616 original size:18 final size:20
Alignment explanation
Indices: 25077595--25077640 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
25077585 AAGTGAAATA
25077595 GTGAATTGAAAAT-AGA-AT
1 GTGAATTGAAAATGAGACAT
*
25077613 GTGAAATGAAAATGAGACAT
1 GTGAATTGAAAATGAGACAT
*
25077633 ATGAATTG
1 GTGAATTG
25077641 TGTAATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.52
19 3 0.13
20 8 0.35
ACGTcount: A:0.48, C:0.02, G:0.24, T:0.26
Consensus pattern (20 bp):
GTGAATTGAAAATGAGACAT
Found at i:25077812 original size:37 final size:37
Alignment explanation
Indices: 25077771--25077851 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
25077761 CTGAAATATT
**
25077771 TGGAAATGATATTTACTTGATATATTGAAATGTGACA
1 TGGAAATGATATTTACTTGATATATTGAAAAATGACA
25077808 TGGAAATGATATTTACTTGATATATTGAAAAATGACA
1 TGGAAATGATATTTACTTGATATATTGAAAAATGACA
*
25077845 TGTAAAT
1 TGGAAAT
25077852 ATGTGATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (37 bp):
TGGAAATGATATTTACTTGATATATTGAAAAATGACA
Found at i:25087457 original size:3 final size:3
Alignment explanation
Indices: 25087449--25087494 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
25087439 TTATACTACC
25087449 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
25087495 CATCTATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:25087675 original size:25 final size:25
Alignment explanation
Indices: 25087638--25087698 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
25087628 TTTGCTGTCC
* *
25087638 TTTTATTTATTTTATAATCAGT-TTATT
1 TTTTA-TT-TTTTAAAACCAGTATTA-T
*
25087665 TTTTATTTTTTAAAACCCGTATTAT
1 TTTTATTTTTTAAAACCAGTATTAT
25087690 TTTTATTTT
1 TTTTATTTT
25087699 ATCATTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 20 0.67
26 5 0.17
27 5 0.17
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.66
Consensus pattern (25 bp):
TTTTATTTTTTAAAACCAGTATTAT
Found at i:25087728 original size:20 final size:20
Alignment explanation
Indices: 25087690--25087728 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
25087680 CCCGTATTAT
*
25087690 TTTTATTTTATCATTTATTC
1 TTTTATTTTATCATATATTC
25087710 TTTTATTTATAT-ATATATT
1 TTTTATTT-TATCATATATT
25087729 TTCCTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATTTTATCATATATTC
Found at i:25089610 original size:6 final size:6
Alignment explanation
Indices: 25089599--25089633 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
25089589 ATTCATTCCA
25089599 TGCATT TGCATT TGCATT TGCATT TGCATT TGCAT
1 TGCATT TGCATT TGCATT TGCATT TGCATT TGCAT
25089634 GGCATTGCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (6 bp):
TGCATT
Found at i:25092456 original size:40 final size:39
Alignment explanation
Indices: 25092401--25092494 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 39
25092391 CAACAGACAG
**
25092401 AAGCTCATAAGAGCTGATCCAACCAAAGTACGCCAAACAA
1 AAGCTCATAAGAGCTGATCCAACCAAAACACGCC-AACAA
* * * * *
25092441 AAGCTTATAAGAGCTGCTCCACCCAAAACATGCCAACAG
1 AAGCTCATAAGAGCTGATCCAACCAAAACACGCCAACAA
25092480 AAGCTCATAAGAGCT
1 AAGCTCATAAGAGCT
25092495 AAGAAGAAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 18 0.39
40 28 0.61
ACGTcount: A:0.41, C:0.28, G:0.16, T:0.15
Consensus pattern (39 bp):
AAGCTCATAAGAGCTGATCCAACCAAAACACGCCAACAA
Found at i:25098700 original size:166 final size:166
Alignment explanation
Indices: 25098419--25098944 Score: 854
Period size: 166 Copynumber: 3.1 Consensus size: 166
25098409 CTATCTCAAT
* *
25098419 TTCATCCACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCGTTTTCGGAG
1 TTCATCTACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCGTTTTCGGAA
25098484 TTGACTGATCAGATCGACTATTCGACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
66 TTGACTGATCAGATCGACTATTCGACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
25098549 TTTTTGATCTATATAAATTCAAAATTAACTTATTTA
131 TTTTTGATCTATATAAATTCAAAATTAACTTATTTA
*
25098585 TTCATCTACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCATTTTCGGAA
1 TTCATCTACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCGTTTTCGGAA
*
25098650 TTGACTGATCAGATCGACTATTCAACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
66 TTGACTGATCAGATCGACTATTCGACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
*
25098715 TTTTTGATTTATATAAATTCAAAATTAACTTATTTATAAATACTA
131 TTTTTGATCTATATAAATTCAAAATTAAC----TTAT---T--TA
25098760 TCTCAATTTCATCCACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCGTT
1 T-TC-A--TC-T--ACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCGTT
*
25098825 TTCGGAATTGACTGATCAAATCGACTATTCGACAACCTTGCTTTTCTCCCGATCTAAATCTGAAT
59 TTCGGAATTGACTGATCAGATCGACTATTCGACAACCTTGCTTTTCTCCCGATCTAAATCTGAAT
25098890 TCTTTCTTTTTTGATCTATATAAATTCAAAATTAACTTATTTA
124 TCTTTCTTTTTTGATCTATATAAATTCAAAATTAACTTATTTA
25098933 TTCATCTACTCA
1 TTCATCTACTCA
25098945 TTCAATTTAG
Statistics
Matches: 335, Mismatches: 9, Indels: 32
0.89 0.02 0.09
Matches are distributed among these distances:
166 159 0.47
168 1 0.00
169 2 0.01
170 4 0.01
171 1 0.00
172 2 0.01
173 4 0.01
175 4 0.01
176 2 0.01
177 1 0.00
178 4 0.01
179 2 0.01
180 1 0.00
182 148 0.44
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.41
Consensus pattern (166 bp):
TTCATCTACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCGTTTTCGGAA
TTGACTGATCAGATCGACTATTCGACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
TTTTTGATCTATATAAATTCAAAATTAACTTATTTA
Found at i:25098899 original size:182 final size:182
Alignment explanation
Indices: 25098585--25098933 Score: 653
Period size: 182 Copynumber: 1.9 Consensus size: 182
25098575 AACTTATTTA
*
25098585 TTCATCTACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCATTTTCGGAA
1 TTCATCCACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCATTTTCGGAA
*
25098650 TTGACTGATCAGATCGACTATTCAACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
66 TTGACTGATCAAATCGACTATTCAACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
*
25098715 TTTTTGATTTATATAAATTCAAAATTAACTTATTTATAAATACTATCTCAAT
131 TTTTTGATCTATATAAATTCAAAATTAACTTATTTATAAATACTATCTCAAT
*
25098767 TTCATCCACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCGTTTTCGGAA
1 TTCATCCACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCATTTTCGGAA
*
25098832 TTGACTGATCAAATCGACTATTCGACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
66 TTGACTGATCAAATCGACTATTCAACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
25098897 TTTTTGATCTATATAAATTCAAAATTAACTTATTTAT
131 TTTTTGATCTATATAAATTCAAAATTAACTTATTTAT
25098934 TCATCTACTC
Statistics
Matches: 162, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
182 162 1.00
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (182 bp):
TTCATCCACTCAATAAATGTATATACATTTAAGTTCAATTATACGAGCTTACCTCATTTTCGGAA
TTGACTGATCAAATCGACTATTCAACAACCTTGCTTTTCTCCCGATCTAAATCTGAATTCTTTCT
TTTTTGATCTATATAAATTCAAAATTAACTTATTTATAAATACTATCTCAAT
Found at i:25116738 original size:44 final size:44
Alignment explanation
Indices: 25116675--25116764 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
25116665 AGAGTAAGTT
25116675 ATAAAGCTTAGTAAGTTCATATGTGAACATGAAATAATCATAAC
1 ATAAAGCTTAGTAAGTTCATATGTGAACATGAAATAATCATAAC
25116719 ATAAAGCTTAGTAAGTTCATATGTGAACATGAAATAATCATAAC
1 ATAAAGCTTAGTAAGTTCATATGTGAACATGAAATAATCATAAC
25116763 AT
1 AT
25116765 TCATTAGCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (44 bp):
ATAAAGCTTAGTAAGTTCATATGTGAACATGAAATAATCATAAC
Found at i:25121415 original size:40 final size:38
Alignment explanation
Indices: 25121328--25121417 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 38
25121318 ACCATCTCCG
* * *
25121328 TCCAACCCAACACACCATGTGGGGATAAAATCGACCCA
1 TCCAACCCTACACACCATATGGGGATAAAATCAACCCA
* *
25121366 -CCTAGCCCTACACACCAAGTATGGGGATAGAATCAACCCA
1 TCC-AACCCTACACACC-A-TATGGGGATAAAATCAACCCA
25121406 TCCAACCCTACA
1 TCCAACCCTACA
25121418 TAACAAGTGG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
37 2 0.05
38 11 0.26
39 1 0.02
40 26 0.62
41 2 0.05
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14
Consensus pattern (38 bp):
TCCAACCCTACACACCATATGGGGATAAAATCAACCCA
Found at i:25121425 original size:40 final size:40
Alignment explanation
Indices: 25121347--25121425 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
25121337 ACACACCATG
* * *
25121347 TGGGGATAAAATCGACCCACCTAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCACCTAACCCTACACAACAAGTA
* *
25121387 TGGGGATAGAATCAACCCATCC-AACCCTACATAACAAGT
1 TGGGGATAAAATCAACCCA-CCTAACCCTACACAACAAGT
25121426 GGTATTGTAC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.37, C:0.30, G:0.16, T:0.16
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCTAACCCTACACAACAAGTA
Found at i:25124238 original size:20 final size:21
Alignment explanation
Indices: 25124204--25124259 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
25124194 TGATGATATT
*
25124204 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
25124225 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
25124245 TTTTATTATTTTAAT
1 TTATATTATTTTAAT
25124260 ATTATTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.13
20 14 0.45
21 13 0.42
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:25124250 original size:18 final size:20
Alignment explanation
Indices: 25124209--25124259 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
25124199 ATATTTTATG
*
25124209 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
*
25124228 ATTATTTTAATGAGATATTTT
1 ATTATTTTAATGAGATA-TAT
25124249 ATTATTTTAAT
1 ATTATTTTAAT
25124260 ATTATTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 13 0.46
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:25124283 original size:11 final size:11
Alignment explanation
Indices: 25124247--25124285 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
25124237 ATGAGATATT
25124247 TTATTATTTTA
1 TTATTATTTTA
* *
25124258 ATATTATTTCA
1 TTATTATTTTA
*
25124269 TTATTATTTTT
1 TTATTATTTTA
25124280 TTATTA
1 TTATTA
25124286 ATTATTTAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:25126501 original size:45 final size:46
Alignment explanation
Indices: 25126423--25126603 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
25126413 AGTGTGCTCT
*
25126423 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
25126469 CTGATATGAAATGTGT-AGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
25126514 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
25126560 ATGACA-GAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
25126604 TCATGTCAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
45 42 0.35
46 79 0.65
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:25126625 original size:91 final size:90
Alignment explanation
Indices: 25126438--25126626 Score: 213
Period size: 91 Copynumber: 2.1 Consensus size: 90
25126428 ATGAAATGTG
* * ** * *
25126438 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAGACCATGGTTGAAAGAT
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATAAGTAGACCATAGTTGAAAGAC
* *
25126503 ACCATGGCAACGTGATATGAAATGAA
66 ACCATGGCAACATGATA-GAAATAAA
*
25126529 CAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATAAGTAAGACCATAGTTGAAAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATAAGT-AGACCATAGTTGAAAG
* *
25126593 ACACTATGGCATCATG-TCA-AAGATAAA
64 ACACCATGGCAACATGAT-AGAA-ATAAA
25126620 TAAGACC
1 TAAGACC
25126627 GTGGATGGGA
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
90 3 0.04
91 51 0.62
92 28 0.34
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.21
Consensus pattern (90 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATAAGTAGACCATAGTTGAAAGAC
ACCATGGCAACATGATAGAAATAAA
Found at i:25135706 original size:40 final size:40
Alignment explanation
Indices: 25135660--25135738 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
25135650 GCACACCATG
* * * *
25135660 TGGGGATAAAATTAACCCACCCAGCCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCAACCAACCCTACACAACAAGTA
*
25135700 TGGGGATAGAATCAACCCAACCAACCCTACACAACAAGT
1 TGGGGATAAAATCAACCCAACCAACCCTACACAACAAGT
25135739 GGTACTGTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.39, C:0.32, G:0.15, T:0.14
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCAACCAACCCTACACAACAAGTA
Found at i:25139616 original size:13 final size:13
Alignment explanation
Indices: 25139598--25139624 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25139588 AGAGAAATCG
25139598 CACACGGGCGTGT
1 CACACGGGCGTGT
25139611 CACACGGGCGTGT
1 CACACGGGCGTGT
25139624 C
1 C
25139625 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:25148722 original size:12 final size:13
Alignment explanation
Indices: 25148686--25148723 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
25148676 AAATATTCGA
25148686 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
25148699 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
25148713 CTTG-TCTTAAT
1 CTTGTTCTTAAT
25148724 ATTCTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:25153124 original size:138 final size:138
Alignment explanation
Indices: 25152876--25153154 Score: 540
Period size: 138 Copynumber: 2.0 Consensus size: 138
25152866 TCTCTTCCAG
25152876 ATCCTCTTCAAGTTGTAGTTAATCAAGTTATCCAAAGGAAAAATAGATATATTCTCTAGTTGACA
1 ATCCTCTTCAAGTTGTAGTTAATCAAGTTATCCAAAGGAAAAATAGATATATTCTCTAGTTGACA
*
25152941 GTTGGAGAAATCCAACAAGAAGTTTTTATTTCCTTAGAAGATATTAGCAACAGGATAAAAATATT
66 GTTGGAGAAATCCAACAAGAAGTTTTTATTTCCTTAGAAGATATTAGCAACAGGAGAAAAATATT
25153006 CACAGACT
131 CACAGACT
*
25153014 ATCCTCTTCAAGTTGTAGTTAATCAAGTTCTCCAAAGGAAAAATAGATATATTCTCTAGTTGACA
1 ATCCTCTTCAAGTTGTAGTTAATCAAGTTATCCAAAGGAAAAATAGATATATTCTCTAGTTGACA
25153079 GTTGGAGAAATCCAACAAGAAGTTTTTATTTCCTTAGAAGATATTAGCAACAGGAGAAAAATATT
66 GTTGGAGAAATCCAACAAGAAGTTTTTATTTCCTTAGAAGATATTAGCAACAGGAGAAAAATATT
25153144 CACAGACT
131 CACAGACT
25153152 ATC
1 ATC
25153155 TCCATAGTGA
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 139 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (138 bp):
ATCCTCTTCAAGTTGTAGTTAATCAAGTTATCCAAAGGAAAAATAGATATATTCTCTAGTTGACA
GTTGGAGAAATCCAACAAGAAGTTTTTATTTCCTTAGAAGATATTAGCAACAGGAGAAAAATATT
CACAGACT
Found at i:25156193 original size:30 final size:30
Alignment explanation
Indices: 25156159--25156219 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
25156149 AATCATAGGT
25156159 AATCTCCACCACTTGTAAATGATATGATAC
1 AATCTCCACCACTTGTAAATGATATGATAC
25156189 AATCTCCACCACTTGTAAATGATATGATAC
1 AATCTCCACCACTTGTAAATGATATGATAC
25156219 A
1 A
25156220 CTAATCAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (30 bp):
AATCTCCACCACTTGTAAATGATATGATAC
Found at i:25157565 original size:12 final size:11
Alignment explanation
Indices: 25157530--25157609 Score: 63
Period size: 12 Copynumber: 6.9 Consensus size: 11
25157520 ATATGTTTTC
25157530 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
25157543 AAAATTGAAAT
1 AAAATAAAAAT
25157554 GAAAATAAAAAT
1 -AAAATAAAAAT
25157566 AAAAATAAAAAT
1 -AAAATAAAAAT
*
25157578 AAAATAAGAAT
1 AAAATAAAAAT
*
25157589 AAGAATAAGAA-
1 AA-AATAAAAAT
*
25157600 CAAATAAAAA
1 AAAATAAAAA
25157610 ATAGGAGGAG
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
10 7 0.12
11 16 0.28
12 29 0.51
13 5 0.09
ACGTcount: A:0.75, C:0.01, G:0.06, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:25157581 original size:23 final size:23
Alignment explanation
Indices: 25157550--25157609 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
25157540 AATAAAATTG
25157550 AAATGAAAATAAAAATAAAAATAA
1 AAAT-AAAATAAAAATAAAAATAA
* *
25157574 AAATAAAATAAGAATAAGAATAA
1 AAATAAAATAAAAATAAAAATAA
* *
25157597 GAA-CAAATAAAAA
1 AAATAAAATAAAAA
25157610 ATAGGAGGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 8 0.26
23 19 0.61
24 4 0.13
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.15
Consensus pattern (23 bp):
AAATAAAATAAAAATAAAAATAA
Found at i:25157599 original size:6 final size:6
Alignment explanation
Indices: 25157550--25157596 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
25157540 AATAAAATTG
* * *
25157550 AAATGA AAATAA AAATAA AAATAA AAAT-A AAATAA GAATAA GAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
25157597 GAACAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 5 0.13
6 33 0.87
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:25167958 original size:27 final size:27
Alignment explanation
Indices: 25167920--25167973 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
25167910 ACTAGGTGTT
* *
25167920 AATTAGAAAGAGATTTTAATTAATCAA
1 AATTAGAAAGAGATTTCAATCAATCAA
25167947 AATTAGAAAGAGATTTCAATCAATCAA
1 AATTAGAAAGAGATTTCAATCAATCAA
25167974 CCTAGGGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.30
Consensus pattern (27 bp):
AATTAGAAAGAGATTTCAATCAATCAA
Found at i:25173319 original size:7 final size:6
Alignment explanation
Indices: 25173290--25173329 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
25173280 GTTTAAAAAC
* *
25173290 TTTTTA TTTTTTA TTTTTA TTTTTA CTTTTA TCTTTA TTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
25173330 ATCTTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:25173319 original size:13 final size:14
Alignment explanation
Indices: 25173288--25173319 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
25173278 ATGTTTAAAA
25173288 ACTTTTTATTTTTT
1 ACTTTTTATTTTTT
25173302 A-TTTTTA-TTTTT
1 ACTTTTTATTTTTT
25173314 ACTTTT
1 ACTTTT
25173320 ATCTTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.35
13 10 0.59
14 1 0.06
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (14 bp):
ACTTTTTATTTTTT
Found at i:25177649 original size:50 final size:50
Alignment explanation
Indices: 25177530--25177666 Score: 165
Period size: 50 Copynumber: 2.8 Consensus size: 50
25177520 AATCAATAAG
* * * *
25177530 TACCTATACCATGGCCCGTAGCCAAATTAAGGTA--ACT-TATCCCTGAG
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTATTACTCTATCACTGAA
* * *
25177577 TACCTATACTATGGCTCGTAGCCAAATCAAGGTATTACTCT-TTACTGACA
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTATTACTCTATCACTGA-A
*
25177627 TACTTATACCATGGCACGTAGCCAAATCAAGGTATTACTC
1 TACCTATACCATGGCACGTAGCCAAATCAAGGTATTACTC
25177667 ACACCCGAAG
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
47 31 0.40
49 8 0.10
50 38 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (50 bp):
TACCTATACCATGGCACGTAGCCAAATCAAGGTATTACTCTATCACTGAA
Found at i:25179188 original size:30 final size:30
Alignment explanation
Indices: 25179154--25179215 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
25179144 AGGACCCAGG
* *
25179154 TTCGAGTTGCTGTGCACGTGAAGGACTCTC
1 TTCGAGCTGCTGTGCACGCGAAGGACTCTC
*
25179184 TTCGAGCTGCTGTGCGCGCGAAGGACTCTC
1 TTCGAGCTGCTGTGCACGCGAAGGACTCTC
25179214 TT
1 TT
25179216 TTTGATGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.15, C:0.26, G:0.31, T:0.29
Consensus pattern (30 bp):
TTCGAGCTGCTGTGCACGCGAAGGACTCTC
Found at i:25180854 original size:27 final size:26
Alignment explanation
Indices: 25180816--25180900 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 26
25180806 TGGAAGAAGC
*
25180816 GTTCTGGTGGCTATGCCGCAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
25180843 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* ** * *
25180869 GCATCTGGTTACTCTGTCACAATATCT
1 G-TTCTGGTGGCTATGCCACAATATCT
25180896 GTTCT
1 GTTCT
25180901 AGCATCCATG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 11 0.22
27 39 0.78
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:25185005 original size:27 final size:26
Alignment explanation
Indices: 25184967--25185103 Score: 132
Period size: 27 Copynumber: 5.1 Consensus size: 26
25184957 TGGAAGAAGC
*
25184967 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
25184994 GTTCTGGTGGCTCTGCCACAAATATAT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
* * * *
25185021 ATTTTGGTGGCTCTTCTACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
25185047 GCATCTGGTGACTCT-CTCACAATATCT
1 G-TTCTGGTGGCTCTGC-CACAATATCT
* *
25185074 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
25185101 GTT
1 GTT
25185104 TTGTTAGCCA
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.09
27 84 0.91
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:25186098 original size:16 final size:16
Alignment explanation
Indices: 25186077--25186107 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
25186067 TTAAGTCCTT
25186077 TTGTCAAATTAAGCAC
1 TTGTCAAATTAAGCAC
25186093 TTGTCAAATTAAGCA
1 TTGTCAAATTAAGCA
25186108 TTCAAACTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (16 bp):
TTGTCAAATTAAGCAC
Found at i:25206559 original size:79 final size:83
Alignment explanation
Indices: 25206420--25206579 Score: 256
Period size: 80 Copynumber: 2.0 Consensus size: 83
25206410 AAAACACCAA
25206420 TACTCTCCTAAAAATCCAATTAAAACGACGCCGTTTTCGTTAAACTGCTATATTTTTTGC-GCG-
1 TACTCTCCTAAAAATCCAATTAAAACGACGCCGTTTTCGTTAAACTGCTATATTTTTTGCGGCGT
25206483 TTTTTAAA-AAACGCCGC
66 TTTTTAAATAAACGCCGC
* * * *
25206500 TACTCTTCTAAATATCCAATTAAAACGACGCTGTTTTCGTT-AACTGCTATGTTTTTTGCGGCGT
1 TACTCTCCTAAAAATCCAATTAAAACGACGCCGTTTTCGTTAAACTGCTATATTTTTTGCGGCGT
25206564 TTTTTAAATAAACGCC
66 TTTTTAAATAAACGCC
25206580 AGTAATCTCT
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
79 17 0.23
80 41 0.56
81 8 0.11
82 7 0.10
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (83 bp):
TACTCTCCTAAAAATCCAATTAAAACGACGCCGTTTTCGTTAAACTGCTATATTTTTTGCGGCGT
TTTTTAAATAAACGCCGC
Found at i:25206982 original size:7 final size:7
Alignment explanation
Indices: 25206970--25207024 Score: 83
Period size: 7 Copynumber: 7.7 Consensus size: 7
25206960 ATTAAACTGG
25206970 CCTAAAC
1 CCTAAAC
25206977 CCTAAAC
1 CCTAAAC
25206984 CCTAAAC
1 CCTAAAC
25206991 CCTAAAC
1 CCTAAAC
*
25206998 CATAAAC
1 CCTAAAC
*
25207005 ACTTAAAC
1 -CCTAAAC
25207013 CCTAAAC
1 CCTAAAC
25207020 CCTAA
1 CCTAA
25207025 TCCCCAAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
7 38 0.86
8 6 0.14
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.16
Consensus pattern (7 bp):
CCTAAAC
Found at i:25207019 original size:36 final size:35
Alignment explanation
Indices: 25206972--25207056 Score: 107
Period size: 36 Copynumber: 2.4 Consensus size: 35
25206962 TAAACTGGCC
* *
25206972 TAAACCCTAAACCCTAAACCCTAAACCATAAACACT
1 TAAACCCTAAACCCTAAACCCCAAACCAT-AACAAT
* *
25207008 TAAACCCTAAACCCTAATCCCCAAATCATAACAAT
1 TAAACCCTAAACCCTAAACCCCAAACCATAACAAT
* *
25207043 TAAATCATAAACCC
1 TAAACCCTAAACCC
25207057 CACACCCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 17 0.40
36 26 0.60
ACGTcount: A:0.47, C:0.34, G:0.00, T:0.19
Consensus pattern (35 bp):
TAAACCCTAAACCCTAAACCCCAAACCATAACAAT
Found at i:25207702 original size:41 final size:40
Alignment explanation
Indices: 25207523--25207700 Score: 207
Period size: 41 Copynumber: 4.4 Consensus size: 40
25207513 GTTATATGAC
* * *
25207523 TTTTAGTGGCGTTTTACCAAAAGCGCCTCCAATGCT-TGGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT--GT
* *
25207564 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-TGT
* *
25207605 CTTTAGCGGCGTTTGACCAAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * *
25207645 TTTTAGCGGCGTTTTTTACTAAAA-CGCCGTTATTGCTCTGT
1 TTTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTGT
25207686 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
25207701 TTGTAAGACG
Statistics
Matches: 121, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 4 0.03
40 12 0.10
41 96 0.79
42 9 0.07
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:25207731 original size:41 final size:41
Alignment explanation
Indices: 25207565--25207731 Score: 164
Period size: 41 Copynumber: 4.1 Consensus size: 41
25207555 TGCTTGGGTC
* * * *
25207565 TTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCGGGTC
1 TTTAGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTC-TGTT
* * *
25207606 TTTAGCGGCG--TTTGACCAAAAGCGCCGCTAATGCTCTGTT
1 TTTAGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCTGTT
*
25207646 TTTAGCGGCGTTTTTTACTAAAACGCCGTTATTGCTCTGTT
1 TTTAGCGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGTT
* * *
25207687 TTTAGCGGCGTTTTTT-GTAAGACGTCGCTATTGCTCTGTGT
1 TTTAGCGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGT-T
25207728 TTTA
1 TTTA
25207732 CAATTTTTGC
Statistics
Matches: 112, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
40 31 0.28
41 72 0.64
42 9 0.08
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGTT
Found at i:25208639 original size:24 final size:23
Alignment explanation
Indices: 25208592--25208637 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
25208582 AGGTTTAAAA
*
25208592 AAAGCGGGTAGTCGATTTTTTTT
1 AAAGAGGGTAGTCGATTTTTTTT
25208615 AAAGAGGGTAGTCGATTTTTTTT
1 AAAGAGGGTAGTCGATTTTTTTT
25208638 TACTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.07, G:0.26, T:0.43
Consensus pattern (23 bp):
AAAGAGGGTAGTCGATTTTTTTT
Found at i:25212048 original size:26 final size:26
Alignment explanation
Indices: 25212019--25212102 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
25212009 TGATACAAAT
25212019 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
25212045 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25212071 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25212097 TGATAA
1 TGATAA
25212103 GAATATCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Done.