Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 9 of 328
Found at i:2678613 original size:15 final size:15
Alignment explanation
Indices: 2678577--2678610 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
2678567 TTAATTGTTT
*
2678577 TATTATTATATAGTA
1 TATTATTATATAATA
2678592 TATTATTATAATAATA
1 TATTATTAT-ATAATA
2678608 TAT
1 TAT
2678611 ATTCTTAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
TATTATTATATAATA
Found at i:2680049 original size:3 final size:3
Alignment explanation
Indices: 2680041--2680107 Score: 55
Period size: 3 Copynumber: 22.3 Consensus size: 3
2680031 AAATAGATTT
* * * **
2680041 TAA TAA TAA AAA TAA TATT TAA AAA TAA T-A TTT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
2680086 TAA TAA TAA GAA TAA GAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
2680108 TATTTGATAC
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
2 2 0.04
3 45 0.92
4 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:2680063 original size:13 final size:14
Alignment explanation
Indices: 2680047--2680084 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
2680037 ATTTTAATAA
2680047 TAAAAATAATA-TT
1 TAAAAATAATATTT
2680060 TAAAAATAATATTT
1 TAAAAATAATATTT
*
2680074 TAATAATAATA
1 TAAAAATAATA
2680085 ATAATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAAAATAATATTT
Found at i:2680944 original size:2 final size:2
Alignment explanation
Indices: 2680937--2680985 Score: 64
Period size: 2 Copynumber: 25.0 Consensus size: 2
2680927 TCTATCTATC
* * *
2680937 TA TA TA TA TA TA TA TA TA TA TA T- TA TA CA TA TA AA TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2680978 TA TA TA TA
1 TA TA TA TA
2680986 AATTAATTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2687400 original size:21 final size:21
Alignment explanation
Indices: 2687366--2687409 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
2687356 TGATCTTTTA
2687366 ATTTAATTTAATAATGAA-TTT
1 ATTTAATTTAATAAT-AAGTTT
* *
2687387 ATTTATTTTTATAATAAGTTT
1 ATTTAATTTAATAATAAGTTT
2687408 AT
1 AT
2687410 ACTAAGTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTTAATTTAATAATAAGTTT
Found at i:2695082 original size:5 final size:5
Alignment explanation
Indices: 2695072--2695103 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
2695062 CAACCTCACA
2695072 TGGTT TGGTTT TGGTT TGGTT TGGTT TGGTT T
1 TGGTT TGG-TT TGGTT TGGTT TGGTT TGGTT T
2695104 TATGAACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.00, G:0.38, T:0.62
Consensus pattern (5 bp):
TGGTT
Found at i:2716120 original size:15 final size:15
Alignment explanation
Indices: 2716074--2716120 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
2716064 TAATAAATTA
*
2716074 AAAAATTAAGTGTT-
1 AAAAATTAATTGTTG
**
2716088 AAAAATTTAATTACTG
1 AAAAA-TTAATTGTTG
2716104 AAAAATTAATTGTTG
1 AAAAATTAATTGTTG
2716119 AA
1 AA
2716121 TTTAAATTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
14 5 0.19
15 16 0.62
16 5 0.19
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (15 bp):
AAAAATTAATTGTTG
Found at i:2716168 original size:2 final size:2
Alignment explanation
Indices: 2716161--2716192 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2716151 TTAAAATTAA
2716161 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2716193 TAAATACATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2717177 original size:10 final size:11
Alignment explanation
Indices: 2717152--2717178 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
2717142 TGTTACTTCA
2717152 AAAAATTATTT
1 AAAAATTATTT
2717163 AAAAATTATTT
1 AAAAATTATTT
2717174 AAAAA
1 AAAAA
2717179 ATCAAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAAATTATTT
Found at i:2718295 original size:29 final size:29
Alignment explanation
Indices: 2718233--2718303 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
2718223 AATTTTTGTG
*
2718233 TATTT-AGAATTTAGTCATTATATTTTTA
1 TATTTAAGAATTTAGTCATTATATTTTGA
*
2718261 TTTTTAAGAATTTAGTCTATT-TACTTTTGA
1 TATTTAAGAATTTAGTC-ATTATA-TTTTGA
*
2718291 -ATTTAAAAATTTA
1 TATTTAAGAATTTA
2718304 ACTTTAATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 4 0.11
29 24 0.67
30 8 0.22
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (29 bp):
TATTTAAGAATTTAGTCATTATATTTTGA
Found at i:2719076 original size:68 final size:68
Alignment explanation
Indices: 2718944--2719076 Score: 153
Period size: 68 Copynumber: 2.0 Consensus size: 68
2718934 AGTAGAGACC
* * * * ** *
2718944 TAGAGGGACCAAAAGTGATGTTGGACCAATTTCTATAAAATGAAAAAACAAATTGAACATGTGTC
1 TAGAGAGACAAAAAGTGATATTGGACCAATTTCAATAAAATGAAAAAACAAATCAAACACGTGTC
2719009 AAG
66 AAG
* *
2719012 TAGAGAGACAAAAAGTGATATTTGACCAATTTTCAAT-AAATGAAAATAA-ATATCAAACACGTG
1 TAGAGAGACAAAAAGTGATATTGGACCAA-TTTCAATAAAATGAAAA-AACAAATCAAACACGTG
2719075 TC
64 TC
2719077 TATCAAGGTC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
68 46 0.85
69 8 0.15
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (68 bp):
TAGAGAGACAAAAAGTGATATTGGACCAATTTCAATAAAATGAAAAAACAAATCAAACACGTGTC
AAG
Found at i:2719680 original size:31 final size:31
Alignment explanation
Indices: 2719644--2719724 Score: 85
Period size: 31 Copynumber: 2.5 Consensus size: 31
2719634 TTTGATTCAG
* *
2719644 GACTAAAATTTCAAATTTTGAAAAGTACAAT
1 GACTAAAATTTCAAATTTCGAAAAGTACAAC
*
2719675 GACT-AAATTTGACTAA-TTCGAAAAGTACAAC
1 GACTAAAATTT--CAAATTTCGAAAAGTACAAC
2719706 GACTAAAATTGATCAAATT
1 GACTAAAATT--TCAAATT
2719725 AAAATACAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
30 6 0.15
31 21 0.52
32 11 0.28
33 1 0.03
34 1 0.03
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (31 bp):
GACTAAAATTTCAAATTTCGAAAAGTACAAC
Found at i:2722544 original size:21 final size:23
Alignment explanation
Indices: 2722518--2722561 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
2722508 ATTATATCAT
*
2722518 TTTTTATAT-AT-TTTTATTTTA
1 TTTTTATATCATATTATATTTTA
2722539 TTTTTATATCATATTATATTTTA
1 TTTTTATATCATATTATATTTTA
2722562 ACTAATTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 2 0.10
23 9 0.45
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTTTATATCATATTATATTTTA
Found at i:2722561 original size:38 final size:38
Alignment explanation
Indices: 2722488--2722561 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
2722478 TCATTTCAAT
* *
2722488 TATTTTTATTTTATTTTATCATTATATCATTTTTTATA
1 TATTTTTATTTTATTTTATCATCATATCATATTTTATA
*
2722526 TATTTTTATTTTATTTTTAT-ATCATATTATATTTTA
1 TATTTTTATTTTA-TTTTATCATCATATCATATTTTA
2722562 ACTAATTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 26 0.81
39 6 0.19
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (38 bp):
TATTTTTATTTTATTTTATCATCATATCATATTTTATA
Found at i:2722746 original size:15 final size:16
Alignment explanation
Indices: 2722718--2722763 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
2722708 ACATAAATTC
*
2722718 AATACTTAATTTTTT-
1 AATACTTGATTTTTTA
**
2722733 AATGTTTGATTTTTTA
1 AATACTTGATTTTTTA
2722749 AATACTTGATTTTTT
1 AATACTTGATTTTTT
2722764 TTTCAGATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (16 bp):
AATACTTGATTTTTTA
Found at i:2724262 original size:22 final size:21
Alignment explanation
Indices: 2724223--2724263 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
2724213 CAATTCTCCT
* *
2724223 TTTATTTTAATGATTTTAAAA
1 TTTATTTTAATCAATTTAAAA
2724244 TTTATTTATAATCAATTTAA
1 TTTATTT-TAATCAATTTAA
2724264 TATCGTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTATTTTAATCAATTTAAAA
Found at i:2728658 original size:23 final size:23
Alignment explanation
Indices: 2728615--2728658 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
2728605 ACAATTCAAT
*
2728615 ATATTTTCAAGATAAATTCATGC
1 ATATTTTCAAGATAAAGTCATGC
*
2728638 ATATTTAT-AAGATAACGTCAT
1 ATATTT-TCAAGATAAAGTCAT
2728659 CACATACCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.94
24 1 0.06
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (23 bp):
ATATTTTCAAGATAAAGTCATGC
Found at i:2734415 original size:21 final size:20
Alignment explanation
Indices: 2734376--2734415 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
2734366 TAAATATTAA
2734376 TTTAAAAATATTATAAATAT
1 TTTAAAAATATTATAAATAT
* *
2734396 TTTACAAATAATTTTAAATA
1 TTTAAAAAT-ATTATAAATA
2734416 ATATGTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTAAAAATATTATAAATAT
Found at i:2736810 original size:15 final size:16
Alignment explanation
Indices: 2736790--2736822 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
2736780 ATATATTTTT
2736790 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
2736805 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
2736822 T
1 T
2736823 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:2736895 original size:21 final size:22
Alignment explanation
Indices: 2736869--2736927 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
2736859 GTTTTAAGAA
2736869 TTGTTTT-AGTATTATTTTTAT
1 TTGTTTTAAGTATTATTTTTAT
* *
2736890 TTGTTTTAATTTTTATTTTTAT
1 TTGTTTTAAGTATTATTTTTAT
* *
2736912 GT-TTTTAAATA-TATTT
1 TTGTTTTAAGTATTATTT
2736928 AATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 5 0.16
21 14 0.44
22 13 0.41
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (22 bp):
TTGTTTTAAGTATTATTTTTAT
Found at i:2736954 original size:26 final size:25
Alignment explanation
Indices: 2736898--2736958 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
2736888 ATTTGTTTTA
*
2736898 ATTTTTATTT-TTATGTTTTTAAAT
1 ATTTTTATTTATTATATTTTTAAAT
*
2736922 ATATTTAATTTATTATATTTTTAAAT
1 AT-TTTTATTTATTATATTTTTAAAT
*
2736948 TTTTTTATTTA
1 ATTTTTATTTA
2736959 ATGAAATAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 2 0.06
25 15 0.48
26 14 0.45
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (25 bp):
ATTTTTATTTATTATATTTTTAAAT
Found at i:2737288 original size:20 final size:20
Alignment explanation
Indices: 2737263--2737300 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2737253 GTTGGCAAAA
**
2737263 CAGTCACTCTAATTTTAATT
1 CAGTCACTAAAATTTTAATT
2737283 CAGTCACTAAAATTTTAA
1 CAGTCACTAAAATTTTAA
2737301 AAATATAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.39
Consensus pattern (20 bp):
CAGTCACTAAAATTTTAATT
Found at i:2738862 original size:174 final size:173
Alignment explanation
Indices: 2738500--2738926 Score: 611
Period size: 174 Copynumber: 2.5 Consensus size: 173
2738490 TTCGATAATG
* * * *
2738500 ATGTTAATGGGTGATTGATTTCTTACTTTTCGATAACGTTGGTGACTAATTTGTTATTTTTTGAA
1 ATGTTAATGGGTGACTGATTTGTCACTTTTCGATAACGTTAGTGACTAATTTGTTATTTTTTGAA
* * * * *
2738565 AGTTGAGTGACTGAATTTAAAATTTGCCTCGTCCGACATGCAAGTTAATTAGCCACGTCAACTAC
66 AGTTGAGTGACTGAAATGAAAATTTGCCTCATCCAACATGCAAGTTAACTAGCCACGTCAACTAC
* *
2738630 TTAATTGGCCACGTCACCTGTCCCGTTAAGCCTGTAACGAAAA
131 TTAATTAGCCACGTCACCTGTCCCGCTAAGCCTGTAACGAAAA
*
2738673 ATGTTAATGGGTGACTGATTTGTCACTTTTCGATAACGTTAGTGACTAATTTGTTATTTTTTAAA
1 ATGTTAATGGGTGACTGATTTGTCACTTTTCGATAACGTTAGTGACTAATTTGTTATTTTTTGAA
* * * * *
2738738 AATTGAGTGAATGAAATGAAACTTTGCCTCATCCAACATGGCAAGTTAACTGGCCACGTCAGCTA
66 AGTTGAGTGACTGAAATGAAAATTTGCCTCATCCAACAT-GCAAGTTAACTAGCCACGTCAACTA
* * * * * *
2738803 GTTAATTAGCCATGTCACCTGTCCTGCTAGGCCTGTAATGGAAA
130 CTTAATTAGCCACGTCACCTGTCCCGCTAAGCCTGTAACGAAAA
* * *
2738847 ATGTTAATAGGTGACTGATTTGTCACTTTTCTATAACGTTAGTGACTGATTTGTTATTTTTTGAA
1 ATGTTAATGGGTGACTGATTTGTCACTTTTCGATAACGTTAGTGACTAATTTGTTATTTTTTGAA
2738912 AGTTGAGTGACTGAA
66 AGTTGAGTGACTGAA
2738927 TTGGAATCAG
Statistics
Matches: 224, Mismatches: 29, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
173 92 0.41
174 132 0.59
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (173 bp):
ATGTTAATGGGTGACTGATTTGTCACTTTTCGATAACGTTAGTGACTAATTTGTTATTTTTTGAA
AGTTGAGTGACTGAAATGAAAATTTGCCTCATCCAACATGCAAGTTAACTAGCCACGTCAACTAC
TTAATTAGCCACGTCACCTGTCCCGCTAAGCCTGTAACGAAAA
Found at i:2738923 original size:30 final size:31
Alignment explanation
Indices: 2738857--2738925 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
2738847 ATGTTAATAG
*
2738857 GTGACTGATTTGTCACTTTTCTATAACGTTA
1 GTGACTGATTTGTCACTTTTCTATAAAGTTA
*
2738888 GTGACTGATTTGTTA-TTTT-T-TGAAAGTTGA
1 GTGACTGATTTGTCACTTTTCTAT-AAAGTT-A
2738918 GTGACTGA
1 GTGACTGA
2738926 ATTGGAATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 1 0.03
29 6 0.18
30 13 0.38
31 14 0.41
ACGTcount: A:0.23, C:0.10, G:0.22, T:0.45
Consensus pattern (31 bp):
GTGACTGATTTGTCACTTTTCTATAAAGTTA
Found at i:2744107 original size:26 final size:26
Alignment explanation
Indices: 2744071--2744123 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2744061 TATAAGTTAA
2744071 AATAACGTAAAGAAGTCATATTTTTC
1 AATAACGTAAAGAAGTCATATTTTTC
2744097 AATAACGTAAAGAAGTCATATTTTTC
1 AATAACGTAAAGAAGTCATATTTTTC
2744123 A
1 A
2744124 TTCATTTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (26 bp):
AATAACGTAAAGAAGTCATATTTTTC
Found at i:2746182 original size:25 final size:25
Alignment explanation
Indices: 2746146--2746201 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
2746136 TGTATAAGTG
*
2746146 TTGAATGTCTTGTTAAAAGGTTGGA
1 TTGAATGCCTTGTTAAAAGGTTGGA
2746171 TTGAATGCCTTGTTAAAAGGTTGGA
1 TTGAATGCCTTGTTAAAAGGTTGGA
2746196 TTGAAT
1 TTGAAT
2746202 ACTTGAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.29, C:0.05, G:0.27, T:0.39
Consensus pattern (25 bp):
TTGAATGCCTTGTTAAAAGGTTGGA
Found at i:2752317 original size:44 final size:44
Alignment explanation
Indices: 2752254--2752343 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
2752244 AATTCAACAG
2752254 TTAAATTTTAATGGTATTGATGTGATAGTTCATATGGCTTTTTA
1 TTAAATTTTAATGGTATTGATGTGATAGTTCATATGGCTTTTTA
2752298 TTAAATTTTAATGGTATTGATGTGATAGTTCATATGGCTTTTTA
1 TTAAATTTTAATGGTATTGATGTGATAGTTCATATGGCTTTTTA
2752342 TT
1 TT
2752344 TATACTTCAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51
Consensus pattern (44 bp):
TTAAATTTTAATGGTATTGATGTGATAGTTCATATGGCTTTTTA
Found at i:2758106 original size:2 final size:2
Alignment explanation
Indices: 2758099--2758134 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
2758089 ATCATTTGTA
2758099 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2758135 TATGGTATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2770448 original size:7 final size:7
Alignment explanation
Indices: 2770436--2770460 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2770426 TGTTCCATTC
2770436 TCATTGA
1 TCATTGA
2770443 TCATTGA
1 TCATTGA
2770450 TCATTGA
1 TCATTGA
2770457 TCAT
1 TCAT
2770461 GTATGTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (7 bp):
TCATTGA
Found at i:2770845 original size:31 final size:31
Alignment explanation
Indices: 2770804--2770873 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
2770794 CAAGTTAGTC
** *
2770804 CCTAAACTTGGCAATTTGTCCCATATTGGGA
1 CCTAAACTTGGCAATTACTCCCACATTGGGA
* *
2770835 CCTGAACTTGGCAATTACTCCCACATTGGGG
1 CCTAAACTTGGCAATTACTCCCACATTGGGA
2770866 CCTAAACT
1 CCTAAACT
2770874 CGAGGGTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (31 bp):
CCTAAACTTGGCAATTACTCCCACATTGGGA
Found at i:2772718 original size:55 final size:57
Alignment explanation
Indices: 2772600--2773020 Score: 308
Period size: 55 Copynumber: 7.5 Consensus size: 57
2772590 TTGGTGGTGG
** * *
2772600 CCTGTCAATGGCCCACACCAGTATTTAAAAAAAAAATTCAATTTTTTTTTGTGCTGG
1 CCTGTCAATGGCCGGCACCAGTATTTAAAAAAAAAATTCAAATTTTTTTTGTGCTGA
* *
2772657 CCTGTCAATGGTCGGCACCAGTA-TT-AAAAAAATATTCAAATTTTTTTTGTGCTGA
1 CCTGTCAATGGCCGGCACCAGTATTTAAAAAAAAAATTCAAATTTTTTTTGTGCTGA
* * *
2772712 CTTGTCAATGGCCGGCACCAGAATACGAGTTTTTAAAAAAAAATTCAAATTTTTTTGGTGCT-A
1 CCTGTCAATGGCCGGCACCAG--T---A--TTTAAAAAAAAAATTCAAATTTTTTTTGTGCTGA
* *
2772775 GCCTGTCAATGGCCGGCACCAGTA-TTAAAAAAAAAAATCAAA-TTTTTTTATGCT-A
1 -CCTGTCAATGGCCGGCACCAGTATTTAAAAAAAAAATTCAAATTTTTTTTGTGCTGA
* *** * *
2772830 GCCTATCAATGGCCGGCACCAGAATACGAGTTTTTTAAAAAAA---AAA------TTATGCTGG
1 -CCTGTCAATGGCCGGCACCAG--T---A-TTTAAAAAAAAAATTCAAATTTTTTTTGTGCTGA
* * * * *
2772885 CCAGTTAATGGCTGGCACCAGTA-TT-AAAAAAAAA-TCAATTTTTTTTTGTGCTGG
1 CCTGTCAATGGCCGGCACCAGTATTTAAAAAAAAAATTCAAATTTTTTTTGTGCTGA
* * * *
2772939 CCTGTCAATGCCCTGCACCAATA-TTAAAAAAAAAATTC-AATTTTTTTTGTTTCT-A
1 CCTGTCAATGGCCGGCACCAGTATTTAAAAAAAAAATTCAAATTTTTTTTG-TGCTGA
2772994 GCCTGTCAATGGCCGGCACCAGTATTT
1 -CCTGTCAATGGCCGGCACCAGTATTT
2773021 TAATTTTTTT
Statistics
Matches: 293, Mismatches: 40, Indels: 62
0.74 0.10 0.16
Matches are distributed among these distances:
46 7 0.02
47 2 0.01
48 2 0.01
49 1 0.00
52 1 0.00
54 51 0.17
55 97 0.33
56 43 0.15
57 24 0.08
59 4 0.01
60 2 0.01
62 10 0.03
63 3 0.01
64 46 0.16
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (57 bp):
CCTGTCAATGGCCGGCACCAGTATTTAAAAAAAAAATTCAAATTTTTTTTGTGCTGA
Found at i:2772750 original size:64 final size:64
Alignment explanation
Indices: 2772680--2772874 Score: 239
Period size: 64 Copynumber: 3.2 Consensus size: 64
2772670 GGCACCAGTA
* *
2772680 TTAAAAAAATATTCAAATTTTTTTTGTGCT-GACTTGTCAATGGCCGGCACCAGAATACGAGTTT
1 TTAAAAAAAAATTCAAATTTTTTTTGTGCTAG-CCTGTCAATGGCCGGCACCAGAATACGAGTTT
*
2772744 TTAAAAAAAAATTCAAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAG--T---A---T
1 TTAAAAAAAAATTCAAATTTTTTTTGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
* * * *
2772800 TAAAAAAAAAAATCAAA-TTTTTTTATGCTAGCCTATCAATGGCCGGCACCAGAATACGAGTTTT
1 TTAAAAAAAAATTCAAATTTTTTTTGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAG-TTT
2772864 TTAAAAAAAAA
1 TTAAAAAAAAA
2772875 ATTATGCTGG
Statistics
Matches: 112, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
55 32 0.29
56 16 0.14
57 1 0.01
59 1 0.01
60 1 0.01
62 1 0.01
64 59 0.53
65 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (64 bp):
TTAAAAAAAAATTCAAATTTTTTTTGTGCTAGCCTGTCAATGGCCGGCACCAGAATACGAGTTT
Found at i:2772759 original size:119 final size:117
Alignment explanation
Indices: 2772627--2773019 Score: 419
Period size: 119 Copynumber: 3.5 Consensus size: 117
2772617 CCAGTATTTA
* * *
2772627 AAAAAAAAATTCAATTTTTTTTTGTGCTGGCCTGTCAATGGTCGGCACCAGTATTAAAAAAATAT
1 AAAAAAAAATTCAA-TTTTTTTTGTGCTAGCCTGTCAATGGCCGGCACCAGTATTAAAAAAA-AA
*
2772692 TCAAATTTTTTTTGTGCTGACTTGTCAATGGCCGGCACCAGAATACGAGTTTTT
64 TCAAATTTTTTTTGTGCTGACCTGTCAATGGCCGGCACCAGAATACGAGTTTTT
*
2772746 AAAAAAAAATTCAAATTTTTTTGGTGCTAGCCTGTCAATGGCCGGCACCAGTATTAAAAAAAAAA
1 AAAAAAAAATTC-AATTTTTTTTGTGCTAGCCTGTCAATGGCCGGCACCAGTATT--AAAAAAAA
* *
2772811 ATCAAA-TTTTTTTATGCT-AGCCTATCAATGGCCGGCACCAGAATACGAGTTTTT
63 ATCAAATTTTTTTTGTGCTGA-CCTGTCAATGGCCGGCACCAGAATACGAGTTTTT
* * * * * *
2772865 TAAAAAAAA---AA------TTATGCTGGCCAGTTAATGGCTGGCACCAGTATTAAAAAAAAATC
1 AAAAAAAAATTCAATTTTTTTTGTGCTAGCCTGTCAATGGCCGGCACCAGTATTAAAAAAAAATC
* * * * *
2772921 AATTTTTTTTTGTGCTGGCCTGTCAATGCCCTGCACC--AAT---A---TTA
66 AAATTTTTTTTGTGCTGACCTGTCAATGGCCGGCACCAGAATACGAGTTTTT
*
2772965 AAAAAAAAATTCAATTTTTTTTGTTTCTAGCCTGTCAATGGCCGGCACCAGTATT
1 AAAAAAAAATTCAATTTTTTTTG-TGCTAGCCTGTCAATGGCCGGCACCAGTATT
2773020 TTAATTTTTT
Statistics
Matches: 230, Mismatches: 28, Indels: 41
0.77 0.09 0.14
Matches are distributed among these distances:
100 10 0.04
103 3 0.01
106 3 0.01
107 13 0.06
108 27 0.12
109 30 0.13
110 26 0.11
115 2 0.01
118 1 0.00
119 100 0.43
120 8 0.03
121 7 0.03
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (117 bp):
AAAAAAAAATTCAATTTTTTTTGTGCTAGCCTGTCAATGGCCGGCACCAGTATTAAAAAAAAATC
AAATTTTTTTTGTGCTGACCTGTCAATGGCCGGCACCAGAATACGAGTTTTT
Found at i:2772937 original size:54 final size:56
Alignment explanation
Indices: 2772879--2773019 Score: 173
Period size: 56 Copynumber: 2.6 Consensus size: 56
2772869 AAAAAAATTA
* *
2772879 TGCTGGCCAGTTAATGGCTGGCACCAGTATT-AAAAAAAAA-TCAATTTTTTTT-T
1 TGCTGGCCTGTCAATGGCTGGCACCAGTATTAAAAAAAAAATTCAATTTTTTTTGT
* *
2772932 GTGCTGGCCTGTCAATGCCCT-GCACCAATATTAAAAAAAAAATTCAATTTTTTTTGT
1 -TGCTGGCCTGTCAATG-GCTGGCACCAGTATTAAAAAAAAAATTCAATTTTTTTTGT
* * *
2772989 TTCTAGCCTGTCAATGGCCGGCACCAGTATT
1 TGCTGGCCTGTCAATGGCTGGCACCAGTATT
2773020 TTAATTTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
54 24 0.33
55 12 0.16
56 36 0.49
57 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (56 bp):
TGCTGGCCTGTCAATGGCTGGCACCAGTATTAAAAAAAAAATTCAATTTTTTTTGT
Found at i:2773184 original size:31 final size:31
Alignment explanation
Indices: 2773146--2773207 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
2773136 TAATAAGAAA
2773146 GCGAAATTTTTTTAAGATGAATTCTCAAATT
1 GCGAAATTTTTTTAAGATGAATTCTCAAATT
2773177 GCGAAATTTTTTTAAGATGAATTCTCAAATT
1 GCGAAATTTTTTTAAGATGAATTCTCAAATT
2773208 TTGTTTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (31 bp):
GCGAAATTTTTTTAAGATGAATTCTCAAATT
Found at i:2777813 original size:107 final size:106
Alignment explanation
Indices: 2777367--2777869 Score: 539
Period size: 106 Copynumber: 4.7 Consensus size: 106
2777357 ATCAAAGAAT
*
2777367 CATTGATAGGCCAGCACCAAATTTTTTTTTTAAAAAAACTCGTATTCTGGTGCCGGCCATTGACA
1 CATTGACAGGCCAGCACC-AATTTTTTTTTT----AAACTCGTATTCTGGTGCCGGCCATTGACA
**
2777432 -AGCCAGCACAAAAAAAAATTGAATTCTTTTTTTTAATACTGGTGCCGGC
61 GA-CCAGCACAAAAAAATTTTGAA---TTTTTTTTAATACTGGTGCCGGC
* *
2777481 CATTGAC-GGCCAGCACCAAATTTTCTTTTTAAAAACTCGTATTCTGGTGCCGGCCATTGACATA
1 CATTGACAGGCCAGCACC-AATTTT-TTTTT-TAAACTCGTATTCTGGTGCCGGCCATTGACAGA
* **
2777545 CCAGCACAAAAAAA--TT-AATTTTTTTTAATATTGGTGCCGTA
63 CCAGCACAAAAAAATTTTGAATTTTTTTTAATACTGGTGCCGGC
* * * * ** * * *
2777586 TATTGTCAGGCTAGCACCAATTTTTTTTTAAAACTCGTATTCTGGTGATGGCCATTGATAGGCTA
1 CATTGACAGGCCAGCACCAATTTTTTTTTTAAACTCGTATTCTGGTGCCGGCCATTGACAGACCA
* * *
2777651 GCACCAAAAAATTTTGAATTTTTTTTAATACTGGTGTCGGT
66 GCACAAAAAAATTTTGAATTTTTTTTAATACTGGTGCCGGC
** * * * * *
2777692 CATTGATTGACCAGCACCAATTTTTTTTTTAAATTCATATTCTGGTGTCTGCCATTGACAGACCA
1 CATTGACAGGCCAGCACCAATTTTTTTTTTAAACTCGTATTCTGGTGCCGGCCATTGACAGACCA
2777757 GCACAAAAAAATTTTGAATTTTTTTTTAATACTGGTGCCGGC
66 GCACAAAAAAATTTTGAA-TTTTTTTTAATACTGGTGCCGGC
* * * * * *
2777799 CATTGACAGGCCAGCACTAATTTTTTTTTTAAAAACTCGTATTTTGGTGCTGGCAATTGACTGGC
1 CATTGACAGGCCAGCACCAATTTTTTTTTT--AAACTCGTATTCTGGTGCCGGCCATTGACAGAC
2777864 CAGCAC
64 CAGCAC
2777870 CAAATTTTTT
Statistics
Matches: 329, Mismatches: 50, Indels: 25
0.81 0.12 0.06
Matches are distributed among these distances:
103 40 0.12
104 5 0.02
105 33 0.10
106 97 0.29
107 47 0.14
108 2 0.01
109 32 0.10
111 44 0.13
112 1 0.00
113 17 0.05
114 11 0.03
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (106 bp):
CATTGACAGGCCAGCACCAATTTTTTTTTTAAACTCGTATTCTGGTGCCGGCCATTGACAGACCA
GCACAAAAAAATTTTGAATTTTTTTTAATACTGGTGCCGGC
Found at i:2777870 original size:161 final size:163
Alignment explanation
Indices: 2777693--2778037 Score: 473
Period size: 161 Copynumber: 2.1 Consensus size: 163
2777683 GGTGTCGGTC
* * * * * *
2777693 ATTGATTGACCAGCACCAATTTTTTTTTTAAA-TTCATATTCTGGTGTCTGCCATTGACAGACCA
1 ATTGACTGGCCAGCACCAAATTTTTTTTAAAACTT-ATATTCTGGTGACAGCCATTGACAGACCA
* * *
2777757 GCA-CAAAAAAATTTTGAATTTTTTTTTAATACTGGTGCCGGCCATTGACAGGCCAGCA-C-TAA
65 GCATCAAAAAAA-TTTGAAATTTTTTTTAATACTGGTGCAGGCCATTGACAGGCCAGCACCAAAA
* * *
2777819 TTTTTTTTTTAAAAACTCGTATTTTGGTGCTGGCA
129 TTTATTTTTTAAAAACTCGTATTCTGGTGCTAGCA
* * *
2777854 ATTGACTGGCCAGCACCAAATTTTTTTTAAAACTTGTATTCTGGTGACAGCCATTGATAGGCCAG
1 ATTGACTGGCCAGCACCAAATTTTTTTTAAAACTTATATTCTGGTGACAGCCATTGACAGACCAG
2777919 CATCAAAAAAATTTGAAATTTTTTTTAATACTGGTGCAGGCCATTGACAGGCCAGCACCAAAAAT
66 CATCAAAAAAATTTGAAATTTTTTTTAATACTGGTGCAGGCCATTGACAGGCCAGCACC-AAAAT
* *
2777984 TTATTTTTTAAAAACTTGTATTCTGGTGCTAGCT
130 TTATTTTTTAAAAACTCGTATTCTGGTGCTAGCA
*
2778018 ATTGACAGGCCAGCACCAAA
1 ATTGACTGGCCAGCACCAAA
2778038 AAAAATTTAA
Statistics
Matches: 161, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
161 99 0.61
162 11 0.07
164 51 0.32
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (163 bp):
ATTGACTGGCCAGCACCAAATTTTTTTTAAAACTTATATTCTGGTGACAGCCATTGACAGACCAG
CATCAAAAAAATTTGAAATTTTTTTTAATACTGGTGCAGGCCATTGACAGGCCAGCACCAAAATT
TATTTTTTAAAAACTCGTATTCTGGTGCTAGCA
Found at i:2777910 original size:52 final size:52
Alignment explanation
Indices: 2777788--2778037 Score: 196
Period size: 52 Copynumber: 4.6 Consensus size: 52
2777778 TTTTTTAATA
* * * *
2777788 CTGGTGCCGGCCATTGACAGGCCAGCACTAATTTTTTTTTTAAAAACTCGTATT
1 CTGGTG-CAGCCATTGACAGGCCAGCACCAA-ATTTTTTTTAAAAACTTGTATT
* * * *
2777842 TTGGTGCTGGCAATTGACTGGCCAGCACCAAATTTTTTTT-AAAACTTGTATT
1 CTGGTGC-AGCCATTGACAGGCCAGCACCAAATTTTTTTTAAAAACTTGTATT
* * **** * *** * *
2777894 CTGGTGACAGCCATTGATAGGCCAGCATCAAAAAAATTTGAAATTTTTTTTAATA
1 CTGGTG-CAGCCATTGACAGGCCAGCACCAAATTTTTTTTAAA-AACTTGT-ATT
2777949 CTGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTATTTTTTAAAAACTTGTATT
1 CTGGTGCA-GCCATTGACAGGCCAGCACC--AAA-TT-TTTTTTAAAAACTTGTATT
*
2778006 CTGGTGCTAGCTATTGACAGGCCAGCACCAAA
1 CTGGTGC-AGCCATTGACAGGCCAGCACCAAA
2778038 AAAAATTTAA
Statistics
Matches: 150, Mismatches: 35, Indels: 21
0.73 0.17 0.10
Matches are distributed among these distances:
52 38 0.25
53 12 0.08
54 30 0.20
55 29 0.19
57 31 0.21
58 4 0.03
59 6 0.04
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (52 bp):
CTGGTGCAGCCATTGACAGGCCAGCACCAAATTTTTTTTAAAAACTTGTATT
Found at i:2778022 original size:112 final size:111
Alignment explanation
Indices: 2777843--2778106 Score: 342
Period size: 112 Copynumber: 2.4 Consensus size: 111
2777833 ACTCGTATTT
* * *
2777843 TGGTGCTGGCAATTGACTGGCCAGCACC--AAATTTTTTTTAAAACTTGTATTCTGGTGACAGCC
1 TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTAAAACTTGTATTCTGGTGACAGCC
* * *
2777906 ATTGATAGGCCAGCATC-AAAAAAATTTGAAATTTTTTTT-AATAC
66 ATTGACAGGCCAGCACCAAAAAAAATTTAAAATTTTTTTTAAATAC
2777950 TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTATTTTTTAAAAACTTGTATTCTGGTG-CT
1 TGGTGCAGGCCATTGACAGGCCAGCACCAAAAA-TT-TTTTTT-AAAACTTGTATTCTGGTGAC-
*
2778014 AGCTATTGACAGGCCAGCACCAAAAAAAATTTAAAATTTTTTTTAAATAC
62 AGCCATTGACAGGCCAGCACCAAAAAAAATTTAAAATTTTTTTTAAATAC
* * * **
2778064 TAGTGCCGGCCATTGACAGGCCAACACC-AATTTTTTTTTTAAA
1 TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTAAA
2778107 TACTGGTGTT
Statistics
Matches: 137, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
107 25 0.18
109 3 0.02
110 5 0.04
111 13 0.09
112 38 0.28
113 23 0.17
114 30 0.22
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (111 bp):
TGGTGCAGGCCATTGACAGGCCAGCACCAAAAATTTTTTTTAAAACTTGTATTCTGGTGACAGCC
ATTGACAGGCCAGCACCAAAAAAAATTTAAAATTTTTTTTAAATAC
Found at i:2778079 original size:57 final size:55
Alignment explanation
Indices: 2777894--2778093 Score: 180
Period size: 57 Copynumber: 3.6 Consensus size: 55
2777884 AACTTGTATT
* *
2777894 CTGGTGACA-GCCATTGATAGGCCAGCATCAAAAAAATTTGAAATTTTTTTT-AATA
1 CTGGTG-CAGGCCATTGACAGGCCAGCACCAAAAAAATTT-AAATTTTTTTTAAATA
**
2777949 CTGGTGCAGGCCATTGACAGGCCAGCACC--AAAAATTT--ATTTTTTAAAAACTTGTA
1 CTGGTGCAGGCCATTGACAGGCCAGCACCAAAAAAATTTAAATTTTTTTTAAA----TA
*
2778004 TTCTGGTGCTA-GCTATTGACAGGCCAGCACCAAAAAAAATTTAAAATTTTTTTTAAATA
1 --CTGGTGC-AGGCCATTGACAGGCCAGCACC-AAAAAAATTT-AAATTTTTTTTAAATA
* * *
2778063 CTAGTGCCGGCCATTGACAGGCCAACACCAA
1 CTGGTGCAGGCCATTGACAGGCCAGCACCAA
2778094 TTTTTTTTTT
Statistics
Matches: 118, Mismatches: 11, Indels: 31
0.74 0.07 0.19
Matches are distributed among these distances:
50 7 0.06
51 2 0.02
53 8 0.07
54 2 0.02
55 26 0.22
56 2 0.02
57 50 0.42
58 1 0.01
59 2 0.02
60 8 0.07
63 10 0.08
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (55 bp):
CTGGTGCAGGCCATTGACAGGCCAGCACCAAAAAAATTTAAATTTTTTTTAAATA
Found at i:2779308 original size:28 final size:28
Alignment explanation
Indices: 2779277--2779335 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
2779267 TATTTTGTTA
* *
2779277 TAAAAC-TTATATTAAATAATATTTATAT
1 TAAAACATTA-ATTAAATAATAATTAAAT
* *
2779305 TAAATCATTAATTCAATAATAATTAAAT
1 TAAAACATTAATTAAATAATAATTAAAT
2779333 TAA
1 TAA
2779336 TAATTTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (28 bp):
TAAAACATTAATTAAATAATAATTAAAT
Found at i:2780252 original size:31 final size:29
Alignment explanation
Indices: 2780216--2780288 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 29
2780206 TTCCAAAATT
2780216 TAAAAAATATAAAAACTAAAATTGACCAAA
1 TAAAAAATATAAAAACTAAAA-TGACCAAA
* * *
2780246 TAAAAAAGTACAATAACTAAAATGACTAAA
1 TAAAAAA-TATAAAAACTAAAATGACCAAA
*
2780276 T-TAAAATATAAAA
1 TAAAAAATATAAAA
2780289 CTCATAATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 5 0.14
29 4 0.11
30 15 0.42
31 12 0.33
ACGTcount: A:0.66, C:0.08, G:0.04, T:0.22
Consensus pattern (29 bp):
TAAAAAATATAAAAACTAAAATGACCAAA
Found at i:2782481 original size:23 final size:25
Alignment explanation
Indices: 2782455--2782501 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
2782445 TATCATTCAT
*
2782455 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
2782478 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
2782502 TATATTTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:2782822 original size:46 final size:46
Alignment explanation
Indices: 2782762--2782978 Score: 274
Period size: 46 Copynumber: 4.7 Consensus size: 46
2782752 TTTGACGTGA
* * * * * * **
2782762 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TCTCATATCAGGT
* ** * * * *
2782808 TGCCATGGTATCTTTCAACCATAGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
*
2782854 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
2782900 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
2782946 TGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA
2782979 CAGGTTGCCA
Statistics
Matches: 153, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.03
46 149 0.97
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
Found at i:2787283 original size:11 final size:11
Alignment explanation
Indices: 2787267--2787314 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
2787257 CTTTATATAC
2787267 TAATAAAATAA
1 TAATAAAATAA
2787278 TAATAAAATATA
1 TAATAAAATA-A
* * *
2787290 TTATTAAAGTAT
1 -TAATAAAATAA
2787302 TAATAAAATAA
1 TAATAAAATAA
2787313 TA
1 TA
2787315 TTTATCTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
11 20 0.69
12 1 0.03
13 8 0.28
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:2787297 original size:24 final size:24
Alignment explanation
Indices: 2787261--2787316 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
2787251 TTCTTTCTTT
*
2787261 ATATACTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* * *
2787285 ATATATTATTAAAGTATTAATAAA
1 ATATATTAATAAAATAATAATAAA
2787309 ATAATATT
1 AT-ATATT
2787317 TATCTAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:2789915 original size:19 final size:18
Alignment explanation
Indices: 2789891--2789932 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
2789881 TCTTCTTCTT
2789891 TTTTTCAATT-ATTTCTTCC
1 TTTTTC-ATTCATTTC-TCC
*
2789910 TTTTTCGTTCATTTCTCC
1 TTTTTCATTCATTTCTCC
2789928 TTTTT
1 TTTTT
2789933 TTTTCATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.10, C:0.21, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTTCATTCATTTCTCC
Found at i:2795572 original size:29 final size:28
Alignment explanation
Indices: 2795530--2795588 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 28
2795520 GTATTTTTAG
2795530 TAAATTTAGAATTT-AATT-TTTATGTTT
1 TAAATTTAGAATTTAAATTATTTAT-TTT
2795557 TAAATTTTAAGAATTTAAATTATTTATTTT
1 TAAA-TTT-AGAATTTAAATTATTTATTTT
2795587 TA
1 TA
2795589 GATATCAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 4 0.14
28 3 0.11
29 7 0.25
30 9 0.32
31 5 0.18
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (28 bp):
TAAATTTAGAATTTAAATTATTTATTTT
Found at i:2796678 original size:13 final size:13
Alignment explanation
Indices: 2796660--2796710 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
2796650 AGTTCTTCAT
2796660 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
2796673 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
2796686 TACTTTTGACAAG
1 TGCTTTTGAAAAG
*
2796699 TGCTTTGGAAAA
1 TGCTTTTGAAAA
2796711 TTTTAAGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:2797800 original size:5 final size:5
Alignment explanation
Indices: 2797780--2797815 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
2797770 GTAAAGTTGA
* *
2797780 AAAAT GAAAG AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
2797816 TTTAAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:2798306 original size:16 final size:16
Alignment explanation
Indices: 2798281--2798323 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
2798271 TTGAATTCAA
*
2798281 CAAATAAATTAATTTT
1 CAAATTAATTAATTTT
2798297 CAAATTAATT-ATTTT
1 CAAATTAATTAATTTT
*
2798312 AAAATTAATTAA
1 CAAATTAATTAA
2798324 GTCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (16 bp):
CAAATTAATTAATTTT
Found at i:2804136 original size:25 final size:23
Alignment explanation
Indices: 2804078--2804140 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 23
2804068 TTTTACTCAT
*
2804078 TATTTTTCATAAATATAAATAAA
1 TATTTTTTATAAATATAAATAAA
2804101 T-TCGTTGTTTATAAATATAGATATAAA
1 TAT--TT-TTTATAAATATA-A-ATAAA
2804128 TATTTTTTATAAA
1 TATTTTTTATAAA
2804141 GGAAAATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
22 1 0.03
23 1 0.03
24 2 0.06
25 19 0.58
26 3 0.09
27 6 0.18
28 1 0.03
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (23 bp):
TATTTTTTATAAATATAAATAAA
Found at i:2805991 original size:131 final size:131
Alignment explanation
Indices: 2805757--2806015 Score: 518
Period size: 131 Copynumber: 2.0 Consensus size: 131
2805747 TTTTTTTTTA
2805757 ATGTTTTTATAATTAAAGCATTTTTTGTTGGGAATTGTGTTATGTTTATGTTGGGAATTTTTATT
1 ATGTTTTTATAATTAAAGCATTTTTTGTTGGGAATTGTGTTATGTTTATGTTGGGAATTTTTATT
2805822 TGAAAGGGAATTGTCGAACTATACTGAATGATTTTCTGTTATCTGCTTATATGCTATTGATGTGT
66 TGAAAGGGAATTGTCGAACTATACTGAATGATTTTCTGTTATCTGCTTATATGCTATTGATGTGT
2805887 T
131 T
2805888 ATGTTTTTATAATTAAAGCATTTTTTGTTGGGAATTGTGTTATGTTTATGTTGGGAATTTTTATT
1 ATGTTTTTATAATTAAAGCATTTTTTGTTGGGAATTGTGTTATGTTTATGTTGGGAATTTTTATT
2805953 TGAAAGGGAATTGTCGAACTATACTGAATGATTTTCTGTTATCTGCTTATATGCTATTGATGT
66 TGAAAGGGAATTGTCGAACTATACTGAATGATTTTCTGTTATCTGCTTATATGCTATTGATGT
2806016 TAATTTTTAT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 128 1.00
ACGTcount: A:0.25, C:0.06, G:0.20, T:0.49
Consensus pattern (131 bp):
ATGTTTTTATAATTAAAGCATTTTTTGTTGGGAATTGTGTTATGTTTATGTTGGGAATTTTTATT
TGAAAGGGAATTGTCGAACTATACTGAATGATTTTCTGTTATCTGCTTATATGCTATTGATGTGT
T
Found at i:2806269 original size:32 final size:32
Alignment explanation
Indices: 2806230--2806299 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
2806220 TTTTTATGTA
2806230 AAATTATATTTCTAGGGTTTAGTTAAAATAGT
1 AAATTATATTTCTAGGGTTTAGTTAAAATAGT
2806262 AAATTATATTTCTAGGGTTTAGTTAAAATAGT
1 AAATTATATTTCTAGGGTTTAGTTAAAATAGT
2806294 AAATTA
1 AAATTA
2806300 AGTTTAGAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.43
Consensus pattern (32 bp):
AAATTATATTTCTAGGGTTTAGTTAAAATAGT
Found at i:2826014 original size:22 final size:20
Alignment explanation
Indices: 2825989--2826029 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 20
2825979 ATATAATATA
2825989 TTATTAATATAACTTATTATTT
1 TTATTAATATAA-TT-TTATTT
2826011 TTA-TAA-ATAATTTTATTT
1 TTATTAATATAATTTTATTT
2826029 T
1 T
2826030 ATTTTAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
18 7 0.37
19 2 0.11
20 4 0.21
21 3 0.16
22 3 0.16
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTATTAATATAATTTTATTT
Found at i:2826048 original size:23 final size:23
Alignment explanation
Indices: 2826005--2826048 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
2825995 ATATAACTTA
* *
2826005 TTATTTTTATAAATAATTTTATT
1 TTATTTTAATAAATAAATTTATT
2826028 TTATTTTAAT-AATAAAATTTA
1 TTATTTTAATAAAT-AAATTTA
2826049 AAAATAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TTATTTTAATAAATAAATTTATT
Found at i:2845413 original size:10 final size:10
Alignment explanation
Indices: 2845398--2845425 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
2845388 AAATATCTAG
2845398 ATTTCTCTTC
1 ATTTCTCTTC
2845408 ATTTCTCTTC
1 ATTTCTCTTC
2845418 ATTTCTCT
1 ATTTCTCT
2845426 CAATTCCAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.61
Consensus pattern (10 bp):
ATTTCTCTTC
Found at i:2854993 original size:31 final size:31
Alignment explanation
Indices: 2854957--2855020 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
2854947 TGTAAATTCG
* *
2854957 AAATTTAATCT-TTTTATTTTTTTATTTTTAA
1 AAATTTAAT-TATTTTATTTTTTCAATTTTAA
2854988 AAATTTAATTATTTTATTTTTTCAATTTTAA
1 AAATTTAATTATTTTATTTTTTCAATTTTAA
2855019 AA
1 AA
2855021 TTCATTCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (31 bp):
AAATTTAATTATTTTATTTTTTCAATTTTAA
Found at i:2855017 original size:23 final size:23
Alignment explanation
Indices: 2854967--2855018 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
2854957 AAATTTAATC
* *
2854967 TTTTTATTTTTTTATTTTTAAAA
1 TTTTAATTATTTTATTTTTAAAA
* **
2854990 ATTTAATTATTTTATTTTTTCAA
1 TTTTAATTATTTTATTTTTAAAA
2855013 TTTTAA
1 TTTTAA
2855019 AATTCATTCA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTAATTATTTTATTTTTAAAA
Found at i:2859993 original size:22 final size:23
Alignment explanation
Indices: 2859968--2860012 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
2859958 AATATAATAG
*
2859968 CAAAACGACA-CAAAAACAGTGA
1 CAAAACAACAGCAAAAACAGTGA
*
2859990 CAAAACAACAGCAAAAATAGTGA
1 CAAAACAACAGCAAAAACAGTGA
2860013 AAACAGACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.60, C:0.20, G:0.13, T:0.07
Consensus pattern (23 bp):
CAAAACAACAGCAAAAACAGTGA
Found at i:2860463 original size:20 final size:20
Alignment explanation
Indices: 2860438--2860514 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 20
2860428 TCTCATTTTT
*
2860438 TATTTGTTTTTTTGTTTTAA
1 TATTTGTTTTTATGTTTTAA
2860458 TATTTGTTTTTATGTTTTTAAA
1 TATTTGTTTTTATG-TTTT-AA
*
2860480 TGTATTTGATTTATTATATTTTAA
1 --TATTTG-TTT-TTATGTTTTAA
2860504 -ATTT-TTTTTAT
1 TATTTGTTTTTAT
2860515 TTAATAAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
18 4 0.08
19 3 0.06
20 13 0.27
21 8 0.16
22 2 0.04
24 8 0.16
25 7 0.14
26 4 0.08
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.70
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:2861978 original size:26 final size:26
Alignment explanation
Indices: 2861948--2862002 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
2861938 ATCACTCTTG
*
2861948 TTTAT-AATTTAATTGTTAAATAAT-TT
1 TTTATAAATATAATT-TT-AATAATATT
2861974 TTTATAAATATAATTTTAATAATATT
1 TTTATAAATATAATTTTAATAATATT
2862000 TTT
1 TTT
2862003 TTCTTTGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 6 0.23
26 12 0.46
27 8 0.31
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (26 bp):
TTTATAAATATAATTTTAATAATATT
Found at i:2867066 original size:29 final size:31
Alignment explanation
Indices: 2867021--2867081 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 31
2867011 TTGATAGTTC
2867021 ATGTACCACATTAGATAT-TT-TCAAAGTAT
1 ATGTACCACATTAGATATCTTATCAAAGTAT
* *
2867050 ATGTACCGA-ATTGGATATCTTATGAAAGTAT
1 ATGTACC-ACATTAGATATCTTATCAAAGTAT
2867081 A
1 A
2867082 GGTATCATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 15 0.56
30 3 0.11
31 9 0.33
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (31 bp):
ATGTACCACATTAGATATCTTATCAAAGTAT
Found at i:2867112 original size:92 final size:92
Alignment explanation
Indices: 2866996--2867174 Score: 236
Period size: 92 Copynumber: 1.9 Consensus size: 92
2866986 ATCAAATAAA
** * *
2866996 ATAATAAAACACATATTGATAGTTCATGTACCACATT-AGATATTTTCAAAGTATATGTACCGA-
1 ATAATAAAACACATATTGATAGTTCAAATACCACATTGA-ACATTTTCAAAGTACATGTACC-AC
* *
2867059 ATTGGATATCTTATGAAAGTATAGGTATC
64 ATTGAACATCTTATGAAAGTATAGGTATC
** *
2867088 ATAATAAAATGCATATTGATAGTTCAAATATCACATTGAACATTTTCAAAGTACATGTACCACAT
1 ATAATAAAACACATATTGATAGTTCAAATACCACATTGAACATTTTCAAAGTACATGTACCACAT
*
2867153 TGAACATTTTATGAAAGTATAG
66 TGAACATCTTATGAAAGTATAG
2867175 ATGCTAAATG
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
91 1 0.01
92 73 0.97
93 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (92 bp):
ATAATAAAACACATATTGATAGTTCAAATACCACATTGAACATTTTCAAAGTACATGTACCACAT
TGAACATCTTATGAAAGTATAGGTATC
Found at i:2868656 original size:2 final size:2
Alignment explanation
Indices: 2868649--2868674 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2868639 ACTATTTTCT
2868649 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
2868675 ATTTTTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2877296 original size:20 final size:20
Alignment explanation
Indices: 2877271--2877308 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2877261 GGAAATATAT
2877271 ATATATACATGTATGCATGC
1 ATATATACATGTATGCATGC
*
2877291 ATATATATATGTATGCAT
1 ATATATACATGTATGCAT
2877309 ATGAAACTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (20 bp):
ATATATACATGTATGCATGC
Found at i:2878558 original size:20 final size:20
Alignment explanation
Indices: 2878533--2878571 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2878523 TATAAAGTCT
2878533 ATAATGTATATATTATAAAA
1 ATAATGTATATATTATAAAA
* *
2878553 ATAATGTGTATTTTATAAA
1 ATAATGTATATATTATAAA
2878572 GTTATAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.44
Consensus pattern (20 bp):
ATAATGTATATATTATAAAA
Found at i:2878863 original size:16 final size:14
Alignment explanation
Indices: 2878842--2878875 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 14
2878832 TAATTTTTTT
2878842 TTATAAATATTATATA
1 TTATAAA-ATT-TATA
2878858 TTATAAAATTTATA
1 TTATAAAATTTATA
2878872 TTAT
1 TTAT
2878876 TTTTTGACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 3 0.17
16 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTATAAAATTTATA
Found at i:2878879 original size:38 final size:38
Alignment explanation
Indices: 2878826--2878903 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
2878816 AGTTTTGGAC
* *
2878826 AATTTATAATTTTTTTTTA-TAAATATTATATATTATAA
1 AATTTATAATTTTTTTTGACTAAAT-TTACATATTATAA
*
2878864 AATTTAT-ATTATTTTTTGACTAAATTTGCATATTATAA
1 AATTTATAATT-TTTTTTGACTAAATTTACATATTATAA
2878902 AA
1 AA
2878904 AGGAATTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 3 0.09
38 27 0.77
39 5 0.14
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (38 bp):
AATTTATAATTTTTTTTGACTAAATTTACATATTATAA
Found at i:2882610 original size:15 final size:15
Alignment explanation
Indices: 2882590--2882619 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2882580 TAAATAAATT
2882590 ATTAAAAATAAAAAA
1 ATTAAAAATAAAAAA
*
2882605 ATTAAAGATAAAAAA
1 ATTAAAAATAAAAAA
2882620 TAAATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (15 bp):
ATTAAAAATAAAAAA
Found at i:2884059 original size:22 final size:21
Alignment explanation
Indices: 2884034--2884076 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
2884024 AAATATTAAT
2884034 TACTATAAAATTTTATCAATAA
1 TACT-TAAAATTTTATCAATAA
* *
2884056 TACTTGAAATTTTTTCAATAA
1 TACTTAAAATTTTATCAATAA
2884077 ATAACAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.44
Consensus pattern (21 bp):
TACTTAAAATTTTATCAATAA
Found at i:2884901 original size:30 final size:31
Alignment explanation
Indices: 2884867--2884929 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
2884857 ATTTATTATC
*
2884867 TTTATAATTTTTAAGAGATTAAATTA-AATT
1 TTTATAATTTTTAAGAGATTAAAGTATAATT
*
2884897 TTTATTATTTTTAAGAGATTAAAGTATAATT
1 TTTATAATTTTTAAGAGATTAAAGTATAATT
2884928 TT
1 TT
2884930 ATTTTTACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (31 bp):
TTTATAATTTTTAAGAGATTAAAGTATAATT
Found at i:2885848 original size:19 final size:19
Alignment explanation
Indices: 2885824--2885861 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
2885814 ATTGGATTGA
2885824 TCATATCGACAAACTAATG
1 TCATATCGACAAACTAATG
2885843 TCATATCGACAAACTAATG
1 TCATATCGACAAACTAATG
2885862 ACTGAACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (19 bp):
TCATATCGACAAACTAATG
Found at i:2889628 original size:136 final size:136
Alignment explanation
Indices: 2889384--2889655 Score: 445
Period size: 136 Copynumber: 2.0 Consensus size: 136
2889374 CTTCATTGAG
* * * *
2889384 CAATAAAATCAGTAGATGAGTAAGAGCTATTCACAACTATGTTTGACGTATATTACTAAGGGGCG
1 CAATAAAATCAGTAGATGAGTAAGAGCTATTCACAACTATGTTCGACATATATTAATAAGGAGCG
* *
2889449 TTTGGTTCAAGGAGTGTAAGATTAACTTTGGTAATAGAATTACCAAAAAGCAAAATGACTTGGCG
66 TTTGGTCCAAGGAGTGTAAGATTAACTTTGGTAATAGAATTACCAAAAAGCAAAATGACTTGGCC
2889514 CATTAC
131 CATTAC
** *
2889520 CAATAAAATTGGTAGATGAGTAAGAGCTATTCACAACTATGTTCGACATATATTAATAAGGAGTG
1 CAATAAAATCAGTAGATGAGTAAGAGCTATTCACAACTATGTTCGACATATATTAATAAGGAGCG
* *
2889585 TTTGGTCCAAGGAGTGTAAGATTCACTTTGGTAATAGAATTACCGAAAAGCAAAATGACTTGGCC
66 TTTGGTCCAAGGAGTGTAAGATTAACTTTGGTAATAGAATTACCAAAAAGCAAAATGACTTGGCC
2889650 CATTAC
131 CATTAC
2889656 GGGATATGTT
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 125 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (136 bp):
CAATAAAATCAGTAGATGAGTAAGAGCTATTCACAACTATGTTCGACATATATTAATAAGGAGCG
TTTGGTCCAAGGAGTGTAAGATTAACTTTGGTAATAGAATTACCAAAAAGCAAAATGACTTGGCC
CATTAC
Found at i:2895424 original size:24 final size:27
Alignment explanation
Indices: 2895395--2895447 Score: 67
Period size: 24 Copynumber: 2.1 Consensus size: 27
2895385 ATCTTTTTAA
*
2895395 TTTAATTACTCT-C-GTT-AAATAAAT
1 TTTAATCACTCTACAGTTAAAATAAAT
*
2895419 TTTAATCACTTTACAGTTAAAATAAAT
1 TTTAATCACTCTACAGTTAAAATAAAT
2895446 TT
1 TT
2895448 ATTTATTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 10 0.42
25 1 0.04
26 3 0.12
27 10 0.42
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (27 bp):
TTTAATCACTCTACAGTTAAAATAAAT
Found at i:2900204 original size:19 final size:18
Alignment explanation
Indices: 2900176--2900215 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
2900166 TTTATTACAA
* *
2900176 TAATATTTTATATATTCTT
1 TAATAATTTAAATATT-TT
2900195 TAATAATTTAAATATTTT
1 TAATAATTTAAATATTTT
2900213 TAA
1 TAA
2900216 AAAAATTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
TAATAATTTAAATATTTT
Found at i:2903401 original size:17 final size:17
Alignment explanation
Indices: 2903379--2903414 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
2903369 AGTAATTTTT
2903379 TTAAT-ATTTTATAAATA
1 TTAATAATTTTAT-AATA
2903396 TTAATAATTTTATAATA
1 TTAATAATTTTATAATA
2903413 TT
1 TT
2903415 TTTTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAATAATTTTATAATA
Found at i:2910188 original size:20 final size:20
Alignment explanation
Indices: 2910158--2910200 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
2910148 CTCTATATCA
*
2910158 AAATAAATATAT-ATTATTT
1 AAATAAATATATAATTATAT
2910177 AAATAGAATATATAATTATAT
1 AAATA-AATATATAATTATAT
2910198 AAA
1 AAA
2910201 AATAAATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 7 0.33
21 9 0.43
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
AAATAAATATATAATTATAT
Found at i:2924580 original size:21 final size:20
Alignment explanation
Indices: 2924533--2924614 Score: 146
Period size: 20 Copynumber: 4.0 Consensus size: 20
2924523 AAAGAGCTTG
2924533 TGCCTCTACTTGTTGGTTCA
1 TGCCTCTACTTGTTGGTTCA
2924553 TGCCTCTACTTGTTGGTTCA
1 TGCCTCTACTTGTTGGTTCA
2924573 TAGCCTCTACTTGTTGGTTCA
1 T-GCCTCTACTTGTTGGTTCA
*
2924594 TGCCCCTACTTGTTGGTTCA
1 TGCCTCTACTTGTTGGTTCA
2924614 T
1 T
2924615 ACTTACTATG
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
20 40 0.67
21 20 0.33
ACGTcount: A:0.11, C:0.26, G:0.20, T:0.44
Consensus pattern (20 bp):
TGCCTCTACTTGTTGGTTCA
Found at i:2924591 original size:41 final size:41
Alignment explanation
Indices: 2924534--2924615 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
2924524 AAGAGCTTGT
*
2924534 GCCTCTACTTGTTGGTTCATGCCTCTACTTGTTGGTTCATA
1 GCCTCTACTTGTTGGTTCATGCCCCTACTTGTTGGTTCATA
2924575 GCCTCTACTTGTTGGTTCATGCCCCTACTTGTTGGTTCATA
1 GCCTCTACTTGTTGGTTCATGCCCCTACTTGTTGGTTCATA
2924616 CTTACTATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.12, C:0.26, G:0.20, T:0.43
Consensus pattern (41 bp):
GCCTCTACTTGTTGGTTCATGCCCCTACTTGTTGGTTCATA
Found at i:2924726 original size:20 final size:21
Alignment explanation
Indices: 2924683--2924733 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
2924673 TTCTTTCAAA
2924683 AAAATAAAATTATTGTTGTTT
1 AAAATAAAATTATTGTTGTTT
*
2924704 AAAATTAAATT-TT-TTGCTTT
1 AAAATAAAATTATTGTTG-TTT
2924724 AAAATAAAAT
1 AAAATAAAAT
2924734 GTTTATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 14 0.52
21 10 0.37
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (21 bp):
AAAATAAAATTATTGTTGTTT
Found at i:2937153 original size:26 final size:26
Alignment explanation
Indices: 2937123--2937175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2937113 AAAATTATCT
* *
2937123 ATAATTTTTTATTCAATTTTTAAATA
1 ATAATTTTTCACTCAATTTTTAAATA
2937149 ATAATTTTTCACTCAATTTTTAAATA
1 ATAATTTTTCACTCAATTTTTAAATA
2937175 A
1 A
2937176 AAGAATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.53
Consensus pattern (26 bp):
ATAATTTTTCACTCAATTTTTAAATA
Found at i:2937818 original size:16 final size:16
Alignment explanation
Indices: 2937797--2937834 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
2937787 TATAAAAAAA
*
2937797 GTATTTTTATAATTAT
1 GTATTTTTAAAATTAT
2937813 GTA-TTTTAAAATTAT
1 GTATTTTTAAAATTAT
2937828 GTATTTT
1 GTATTTT
2937835 GATTGTAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (16 bp):
GTATTTTTAAAATTAT
Found at i:2939070 original size:19 final size:18
Alignment explanation
Indices: 2939036--2939083 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
2939026 TCTCTCTCAA
*
2939036 CAAAAA-TTAAAAAAATT
1 CAAAAATTTATAAAAATT
2939053 CAAAATATTTATAAAAATT
1 CAAAA-ATTTATAAAAATT
*
2939072 CCAAAATTTATA
1 CAAAAATTTATA
2939084 TTTTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 5 0.19
18 8 0.30
19 14 0.52
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.31
Consensus pattern (18 bp):
CAAAAATTTATAAAAATT
Found at i:2940000 original size:7 final size:7
Alignment explanation
Indices: 2939970--2940003 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
2939960 ATGGGCTCTT
2939970 CCCCCC-
1 CCCCCCA
2939976 CCCCCCA
1 CCCCCCA
*
2939983 CCCACCA
1 CCCCCCA
2939990 CCCCCCA
1 CCCCCCA
2939997 CCCCCCA
1 CCCCCCA
2940004 AGCGGTCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.15, C:0.85, G:0.00, T:0.00
Consensus pattern (7 bp):
CCCCCCA
Found at i:2949480 original size:14 final size:13
Alignment explanation
Indices: 2949452--2949485 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
2949442 ATGTTTATTT
*
2949452 ATAATTAAAAATA
1 ATAAATAAAAATA
2949465 ATAAATAAAAATTA
1 ATAAATAAAAA-TA
2949479 ATAAATA
1 ATAAATA
2949486 TTGATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
ATAAATAAAAATA
Found at i:2950064 original size:14 final size:16
Alignment explanation
Indices: 2950034--2950075 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
2950024 TTAAGTAAAA
* *
2950034 AAATTATTAAAATTAT
1 AAATTATAAAAAGTAT
2950050 -AATTA-AAAAAGTAT
1 AAATTATAAAAAGTAT
2950064 AAATTATAAAAA
1 AAATTATAAAAA
2950076 TCATAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 7 0.32
15 10 0.45
16 5 0.23
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (16 bp):
AAATTATAAAAAGTAT
Found at i:2950150 original size:40 final size:38
Alignment explanation
Indices: 2950051--2950150 Score: 89
Period size: 42 Copynumber: 2.6 Consensus size: 38
2950041 TAAAATTATA
2950051 ATTAAAAA-AGTAT-AAATTATAAAAATCATAAAAAAAT
1 ATTAAAAATA-TATAAAATTATAAAAATCATAAAAAAAT
* * * *
2950088 ATTAGAAATTTATAAGTTATTATAAACAATTATATAAAAAAT
1 ATTAAAAATATATAA--AATTATAAA-AATCATA-AAAAAAT
2950130 -TTAAAAGATATATAAAATTAT
1 ATTAAAA-ATATATAAAATTAT
2950151 TTAAATTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
37 10 0.20
38 1 0.02
40 13 0.27
41 11 0.22
42 14 0.29
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (38 bp):
ATTAAAAATATATAAAATTATAAAAATCATAAAAAAAT
Found at i:2950176 original size:20 final size:20
Alignment explanation
Indices: 2950105--2950179 Score: 57
Period size: 20 Copynumber: 3.8 Consensus size: 20
2950095 ATTTATAAGT
*
2950105 TATTATAAACAATTATATAAAA
1 TATTATAAA-AATTAT-TTAAA
* *
2950127 AATT-TAAAAGA-TATATAAA
1 TATTATAAAA-ATTATTTAAA
**
2950146 -ATTATTTAAATTATTTAAA
1 TATTATAAAAATTATTTAAA
2950165 TATTATAAAAATTAT
1 TATTATAAAAATTAT
2950180 AAAATCATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
18 4 0.10
19 13 0.32
20 16 0.39
21 5 0.12
22 3 0.07
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (20 bp):
TATTATAAAAATTATTTAAA
Found at i:2950178 original size:9 final size:9
Alignment explanation
Indices: 2950032--2950192 Score: 52
Period size: 9 Copynumber: 17.6 Consensus size: 9
2950022 ATTTAAGTAA
2950032 AAAAATTAT
1 AAAAATTAT
*
2950041 TAAAATTAT
1 AAAAATTAT
2950050 ---AATTA-
1 AAAAATTAT
*
2950055 AAAAAGTAT
1 AAAAATTAT
2950064 --AAATTAT
1 AAAAATTAT
*
2950071 AAAAATCAT
1 AAAAATTAT
*
2950080 AAAAAAATATT
1 -AAAAATTA-T
*
2950091 AGAAATTTAT
1 A-AAAATTAT
**
2950101 AAGTTATTAT
1 AA-AAATTAT
2950111 AAACAATTATAT
1 AAA-AA-T-TAT
2950123 AAAAAATT-T
1 -AAAAATTAT
2950132 AAAAGA-TAT
1 AAAA-ATTAT
2950141 ATAAAATTAT
1 A-AAAATTAT
**
2950151 TTAAATTATTT
1 AAAAATTA--T
*
2950162 AAATATTAT
1 AAAAATTAT
2950171 AAAAATTAT
1 AAAAATTAT
*
2950180 -AAAATCAT
1 AAAAATTAT
2950188 AAAAA
1 AAAAA
2950193 AAATTAAAGA
Statistics
Matches: 111, Mismatches: 20, Indels: 42
0.64 0.12 0.24
Matches are distributed among these distances:
6 5 0.05
7 6 0.05
8 16 0.14
9 39 0.35
10 23 0.21
11 14 0.13
12 5 0.05
13 3 0.03
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (9 bp):
AAAAATTAT
Found at i:2950905 original size:31 final size:30
Alignment explanation
Indices: 2950868--2950932 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
2950858 TAAATTATCG
*
2950868 ATTAAACCCTTGTAAAATAAAAAAAAAATCA
1 ATTAAACCCTCGTAAAAT-AAAAAAAAATCA
* * *
2950899 ATTAAACTCTCGTAAAATAATAAAATATCA
1 ATTAAACCCTCGTAAAATAAAAAAAAATCA
2950929 ATTA
1 ATTA
2950933 CACTCTCCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 14 0.47
31 16 0.53
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (30 bp):
ATTAAACCCTCGTAAAATAAAAAAAAATCA
Found at i:2952167 original size:14 final size:14
Alignment explanation
Indices: 2952148--2952176 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
2952138 AGTTATAAAA
2952148 TGGATGTAATCATT
1 TGGATGTAATCATT
2952162 TGGATGTAATCATT
1 TGGATGTAATCATT
2952176 T
1 T
2952177 TTTTAATGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (14 bp):
TGGATGTAATCATT
Found at i:2964530 original size:9 final size:9
Alignment explanation
Indices: 2964516--2964559 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
2964506 TTATTTATTC
*
2964516 AATTAATTT
1 AATTAATTA
2964525 AATTAATTA
1 AATTAATTA
*
2964534 AACTAATTA
1 AATTAATTA
*
2964543 AATTAACTA
1 AATTAATTA
2964552 AATTAATT
1 AATTAATT
2964560 TCTCAATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (9 bp):
AATTAATTA
Found at i:2964576 original size:16 final size:18
Alignment explanation
Indices: 2964550--2964582 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2964540 TTAAATTAAC
2964550 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
2964567 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
2964583 CCCAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:2965599 original size:21 final size:21
Alignment explanation
Indices: 2965575--2965639 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
2965565 AAATCTAACT
2965575 GAAGCACAAAAGTGCTAAACG
1 GAAGCACAAAAGTGCTAAACG
** *
2965596 GAAGC-CCGAAG-GCT-AACT
1 GAAGCACAAAAGTGCTAAACG
*
2965614 GAAGCACATAAGTGCTAAACG
1 GAAGCACAAAAGTGCTAAACG
2965635 GAAGC
1 GAAGC
2965640 CCGAAGGCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.23
19 7 0.20
20 7 0.20
21 13 0.37
ACGTcount: A:0.42, C:0.22, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAGCACAAAAGTGCTAAACG
Found at i:2965615 original size:39 final size:39
Alignment explanation
Indices: 2965569--2965657 Score: 169
Period size: 39 Copynumber: 2.3 Consensus size: 39
2965559 AACCCGAAAT
2965569 CTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGG
1 CTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGG
*
2965608 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
1 CTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGG
2965647 CTAACTGAAGC
1 CTAACTGAAGC
2965658 TCATCAGAGC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.39, C:0.24, G:0.25, T:0.12
Consensus pattern (39 bp):
CTAACTGAAGCACAAAAGTGCTAAACGGAAGCCCGAAGG
Found at i:2976856 original size:2 final size:2
Alignment explanation
Indices: 2976849--2976876 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2976839 GATATCTAGA
2976849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2976877 TTAATTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2978279 original size:15 final size:16
Alignment explanation
Indices: 2978259--2978293 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
2978249 AATAATTTAT
*
2978259 TAAAAATATT-TAAAA
1 TAAAAATATTAGAAAA
2978274 TAAAAATATTAGAAAA
1 TAAAAATATTAGAAAA
2978290 TAAA
1 TAAA
2978294 GAAAAATCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
TAAAAATATTAGAAAA
Found at i:2979579 original size:2 final size:2
Alignment explanation
Indices: 2979566--2979613 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
2979556 TATTCAAAAC
*
2979566 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2979608 TA TA TA
1 TA TA TA
2979614 CCAGCAATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2980601 original size:16 final size:16
Alignment explanation
Indices: 2980562--2980602 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
2980552 TAATTAGAAT
*
2980562 GATGGAAAATTAAAGG
1 GATGGAAAATTAAAAG
* *
2980578 GGTAGAAAATTAAAAG
1 GATGGAAAATTAAAAG
2980594 GATGGAAAA
1 GATGGAAAA
2980603 CATAATTTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (16 bp):
GATGGAAAATTAAAAG
Found at i:2982223 original size:21 final size:21
Alignment explanation
Indices: 2982174--2982223 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
2982164 GAGATTAATG
2982174 GATTTTA-TATTTGTAATATT
1 GATTTTATTATTTGTAATATT
*
2982194 -ATTAGTATTATTTGTAA-ATT
1 GATT-TTATTATTTGTAATATT
2982214 AGATTTTATT
1 -GATTTTATT
2982224 TTATTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
19 3 0.12
20 5 0.21
21 13 0.54
22 3 0.12
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (21 bp):
GATTTTATTATTTGTAATATT
Found at i:2982603 original size:13 final size:14
Alignment explanation
Indices: 2982575--2982607 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
2982565 ATTACAAAAT
2982575 AAATTTAATGTTTTA
1 AAATTTAA-GTTTTA
2982590 AAATTTAA-TTTTA
1 AAATTTAAGTTTTA
2982603 AAATT
1 AAATT
2982608 AATAGTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
15 8 0.44
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (14 bp):
AAATTTAAGTTTTA
Found at i:2982996 original size:26 final size:27
Alignment explanation
Indices: 2982967--2983022 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
2982957 CAAAACAGAT
*
2982967 ATAA-AGTATTTATTTTATA-ACTAAAA
1 ATAACAGTA-TTATTTAATATACTAAAA
* *
2982993 ATAACATTATTATTTAATATACTAATA
1 ATAACAGTATTATTTAATATACTAAAA
2983020 ATA
1 ATA
2983023 CCATTTACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (27 bp):
ATAACAGTATTATTTAATATACTAAAA
Found at i:2983016 original size:27 final size:26
Alignment explanation
Indices: 2982976--2983027 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
2982966 TATAAAGTAT
*
2982976 TTATTTTATAACTAAAAATAACATTA
1 TTATTTAATAACTAAAAATAACATTA
* *
2983002 TTATTTAATATACTAATAATACCATT
1 TTATTTAATA-ACTAAAAATAACATT
2983028 TACTTGCATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (26 bp):
TTATTTAATAACTAAAAATAACATTA
Found at i:2989510 original size:6 final size:7
Alignment explanation
Indices: 2989490--2989514 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2989480 AAAAAATTAA
2989490 TTATTTT
1 TTATTTT
2989497 TTATTTT
1 TTATTTT
2989504 TTATTTT
1 TTATTTT
2989511 TTAT
1 TTAT
2989515 ATATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTATTTT
Found at i:2989567 original size:75 final size:74
Alignment explanation
Indices: 2989427--2989567 Score: 205
Period size: 75 Copynumber: 1.9 Consensus size: 74
2989417 ATTTAATTAA
** * *
2989427 TTTTTATTTTTATATATAAAATATTTACCCATAATAGAAATTAGTGCATATATAAAAAATTAATT
1 TTTTTATTTTTATATATAAAATATTTAAACATAATAGAAATTAATGCATATATAAAAAATAAATT
2989492 ATTTTTTAT
66 ATTTTTTAT
2989501 TTTTTATTTTTTATATATAAAATATTTAAACATAATA-AAATTTAATGCATATATATAAAAA-AA
1 TTTTTA-TTTTTATATATAAAATATTTAAACATAATAGAAA-TTAATGCATATATA-AAAAATAA
2989564 ATTA
63 ATTA
2989568 CACATTTTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
74 9 0.15
75 46 0.77
76 5 0.08
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (74 bp):
TTTTTATTTTTATATATAAAATATTTAAACATAATAGAAATTAATGCATATATAAAAAATAAATT
ATTTTTTAT
Found at i:2989896 original size:20 final size:19
Alignment explanation
Indices: 2989854--2989896 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
2989844 TGAAATTTTT
* *
2989854 TAAAATATATTAATTAATT
1 TAAAATATAATAATTAATA
*
2989873 TAAAATATGAATAATTGATA
1 TAAAATAT-AATAATTAATA
2989893 TAAA
1 TAAA
2989897 GGCATTTGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
TAAAATATAATAATTAATA
Found at i:2991573 original size:12 final size:12
Alignment explanation
Indices: 2991552--2991581 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
2991542 TCTCTTGAAA
*
2991552 CATAAACATCAT
1 CATAATCATCAT
2991564 CATAATCATCAT
1 CATAATCATCAT
2991576 CATAAT
1 CATAAT
2991582 AATAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (12 bp):
CATAATCATCAT
Found at i:2995016 original size:21 final size:21
Alignment explanation
Indices: 2994992--2995035 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
2994982 TAACGACCTG
* *
2994992 AAGTTGAGTGCACGTTTGAGC
1 AAGTGGAGTGCAAGTTTGAGC
*
2995013 AAGTGGAGTGTAAGTTTGAGC
1 AAGTGGAGTGCAAGTTTGAGC
2995034 AA
1 AA
2995036 CACGTGTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.34, T:0.27
Consensus pattern (21 bp):
AAGTGGAGTGCAAGTTTGAGC
Found at i:3005224 original size:13 final size:13
Alignment explanation
Indices: 3005192--3005225 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
3005182 CATATGTGCA
3005192 ATATTATTTTTAT
1 ATATTATTTTTAT
* *
3005205 TTGTTATTTTTAT
1 ATATTATTTTTAT
3005218 ATATTATT
1 ATATTATT
3005226 CACAAAAAAT
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (13 bp):
ATATTATTTTTAT
Found at i:3006871 original size:9 final size:9
Alignment explanation
Indices: 3006857--3006890 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
3006847 TTATTATATT
3006857 TTTTTTTAC
1 TTTTTTTAC
3006866 TTTTTTTAC
1 TTTTTTTAC
*
3006875 TTTTTTAAC
1 TTTTTTTAC
3006884 TTTTTTT
1 TTTTTTT
3006891 TTATATTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:3007021 original size:23 final size:23
Alignment explanation
Indices: 3006995--3007061 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 23
3006985 AAAAAAATTG
*
3006995 TAATATATATTTAAAATATTTTA
1 TAATATATTTTTAAAATATTTTA
3007018 TAATAT-TTTTTAAAA-ATTTTA
1 TAATATATTTTTAAAATATTTTA
*
3007039 -ATTATTATTTTTAAAAATATTTT
1 TAATA-TATTTTT-AAAATATTTT
3007062 TAACTTTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
20 3 0.08
21 7 0.18
22 13 0.34
23 10 0.26
24 5 0.13
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TAATATATTTTTAAAATATTTTA
Found at i:3007029 original size:22 final size:24
Alignment explanation
Indices: 3006995--3007061 Score: 77
Period size: 23 Copynumber: 2.9 Consensus size: 24
3006985 AAAAAAATTG
*
3006995 TAATATATATTTAAAATATTTT-A-
1 TAATAT-TTTTTAAAATATTTTAAT
3007018 TAATATTTTTTAAAA-ATTTTAAT
1 TAATATTTTTTAAAATATTTTAAT
* *
3007041 TATTATTTTTAAAAATATTTT
1 TAATATTTTTTAAAATATTTT
3007062 TAACTTTATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
21 5 0.13
22 9 0.24
23 19 0.50
24 5 0.13
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TAATATTTTTTAAAATATTTTAAT
Found at i:3007070 original size:24 final size:23
Alignment explanation
Indices: 3006975--3007070 Score: 67
Period size: 21 Copynumber: 4.3 Consensus size: 23
3006965 TAATTTATAT
* *
3006975 TATTAATTTTAAAAAAATTGTAA-
1 TATT-ATTTTTAAAAAATTTTAAC
* *
3006998 TA-TATATTTAAAATATTTT-A-
1 TATTATTTTTAAAAAATTTTAAC
* * *
3007018 TAATATTTTTTAAAAATTTTAAT
1 TATTATTTTTAAAAAATTTTAAC
3007041 TATTATTTTTAAAAATATTTTTAAC
1 TATTATTTTTAAAAA-A-TTTTAAC
3007066 T-TTAT
1 TATTAT
3007071 ATATATATTT
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
20 3 0.05
21 26 0.45
22 2 0.03
23 15 0.26
24 5 0.09
25 7 0.12
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (23 bp):
TATTATTTTTAAAAAATTTTAAC
Found at i:3007117 original size:37 final size:36
Alignment explanation
Indices: 3007076--3007146 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
3007066 TTTATATATA
*
3007076 TATTTGTGAAATTAATTATTTATAAATTTTAAAAATG
1 TATTTGTCAAATTAATTATTTA-AAATTTTAAAAATG
* *
3007113 TATTTTTCAAATTAATTTTTTAAAATTTTAAAAA
1 TATTTGTCAAATTAATTATTTAAAATTTTAAAAA
3007147 ATAATTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 12 0.39
37 19 0.61
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (36 bp):
TATTTGTCAAATTAATTATTTAAAATTTTAAAAATG
Found at i:3012481 original size:10 final size:9
Alignment explanation
Indices: 3012463--3012561 Score: 65
Period size: 10 Copynumber: 10.4 Consensus size: 9
3012453 TAAAATTTAA
3012463 AAAATATTT
1 AAAATATTT
3012472 AAAATCATTT
1 AAAAT-ATTT
*
3012482 AAAATATTAA
1 AAAATATT-T
3012492 AAAATATTT
1 AAAATATTT
*
3012501 TAAATCATTT
1 AAAAT-ATTT
*
3012511 TAAATCATTT
1 AAAAT-ATTT
* *
3012521 TAAATGTTTT
1 AAAAT-ATTT
* *
3012531 ATAATATTA
1 AAAATATTT
3012540 AAAATATATT
1 AAAATAT-TT
*
3012550 -TAATATTT
1 AAAATATTT
3012558 AAAA
1 AAAA
3012562 AATAATTTGA
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
8 2 0.03
9 27 0.38
10 43 0.60
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (9 bp):
AAAATATTT
Found at i:3012525 original size:29 final size:29
Alignment explanation
Indices: 3012453--3012515 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
3012443 AAATTCTATG
*
3012453 TAAAAT-TTAAAAAATATTTAAAATCATT
1 TAAAATATTAAAAAATATTTTAAATCATT
3012481 TAAAATATTAAAAAATATTTTAAATCATT
1 TAAAATATTAAAAAATATTTTAAATCATT
*
3012510 TTAAAT
1 TAAAAT
3012516 CATTTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 6 0.19
29 26 0.81
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (29 bp):
TAAAATATTAAAAAATATTTTAAATCATT
Found at i:3012552 original size:39 final size:39
Alignment explanation
Indices: 3012454--3012561 Score: 100
Period size: 39 Copynumber: 2.8 Consensus size: 39
3012444 AATTCTATGT
3012454 AAAAT-TTAAAAA-ATATTTAAAATCATTTAAAATATTAA
1 AAAATATTAAAAATATATTT-AAATCATTTAAAATATTAA
** * * **
3012492 AAAATATTTTAAATCAT-TTTAAATCATTTTAAATGTTTT
1 AAAATATTAAAAAT-ATATTTAAATCATTTAAAATATTAA
*
3012531 ATAATATTAAAAATATATTT-AAT-ATTTAAAA
1 AAAATATTAAAAATATATTTAAATCATTTAAAA
3012562 AATAATTTGA
Statistics
Matches: 56, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
37 7 0.12
38 10 0.18
39 34 0.61
40 3 0.05
41 2 0.04
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (39 bp):
AAAATATTAAAAATATATTTAAATCATTTAAAATATTAA
Found at i:3012578 original size:31 final size:34
Alignment explanation
Indices: 3012531--3012620 Score: 98
Period size: 33 Copynumber: 2.7 Consensus size: 34
3012521 TAAATGTTTT
3012531 ATAATATTAAAAATATA-TTTAATATTTA-AAAA
1 ATAATATTAAAAATATATTTTAATATTTATAAAA
*
3012563 ATAAT-TTGAAAATATATTTTTAATATTTATAAAA
1 ATAATATTAAAAATATA-TTTTAATATTTATAAAA
* *
3012597 AAATATATTATAAAAT-TTTTTTAA
1 ATA-ATATTA-AAAATATATTTTAA
3012621 AAAATACATT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
31 10 0.21
32 5 0.10
33 11 0.23
34 6 0.12
35 8 0.17
36 3 0.06
37 5 0.10
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (34 bp):
ATAATATTAAAAATATATTTTAATATTTATAAAA
Found at i:3012768 original size:90 final size:90
Alignment explanation
Indices: 3012668--3012839 Score: 317
Period size: 90 Copynumber: 1.9 Consensus size: 90
3012658 ATAAGGACTT
* *
3012668 AAAAAAGAAAAAAGAAAGTCAAAACTTTAAAAAGAAAAAAAGGCTGAAACAAATAAGTTGGCTGT
1 AAAAAAGAAAAAAGAAAGTCAAAACTTCAAAAAAAAAAAAAGGCTGAAACAAATAAGTTGGCTGT
3012733 CAAACTTGAAAACTGGTGGAACCAA
66 CAAACTTGAAAACTGGTGGAACCAA
3012758 AAAAAAGAAAAAAGAAAGTCAAAACTTCAAAAAAAAAAAAAGGCTGAAACAAATAAGTTGGCTGT
1 AAAAAAGAAAAAAGAAAGTCAAAACTTCAAAAAAAAAAAAAGGCTGAAACAAATAAGTTGGCTGT
*
3012823 CAGACTTGAAAACTGGT
66 CAAACTTGAAAACTGGT
3012840 AGCGCCAAAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.56, C:0.11, G:0.17, T:0.16
Consensus pattern (90 bp):
AAAAAAGAAAAAAGAAAGTCAAAACTTCAAAAAAAAAAAAAGGCTGAAACAAATAAGTTGGCTGT
CAAACTTGAAAACTGGTGGAACCAA
Done.