Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 93 of 328
Found at i:26010592 original size:27 final size:30
Alignment explanation
Indices: 26010552--26010625 Score: 100
Period size: 27 Copynumber: 2.6 Consensus size: 30
26010542 TAATTTTTAT
26010552 TATTTATTATTTTATTTCA-TTT-TATTAG
1 TATTTATTATTTTATTTCACTTTATATTAG
* * *
26010580 TATTT-TTATTTTATTTTACTTTATTTTAT
1 TATTTATTATTTTATTTCACTTTATATTAG
26010609 TATTTATTATTTTATTT
1 TATTTATTATTTTATTT
26010626 TGGATATTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
27 12 0.30
28 8 0.20
29 9 0.22
30 11 0.28
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.73
Consensus pattern (30 bp):
TATTTATTATTTTATTTCACTTTATATTAG
Found at i:26015850 original size:36 final size:36
Alignment explanation
Indices: 26015809--26015882 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
26015799 TGGTTTTTAG
26015809 AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
1 AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
26015845 AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
1 AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
26015881 AA
1 AA
26015883 CAAGTGATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (36 bp):
AATTTCAACTAAAAATGGTTGCGACAACCCCAAATT
Found at i:26017135 original size:9 final size:9
Alignment explanation
Indices: 26017117--26017184 Score: 50
Period size: 9 Copynumber: 7.4 Consensus size: 9
26017107 TCAACAAAAT
26017117 AATT-TAAA
1 AATTATAAA
26017125 AATTATAAA
1 AATTATAAA
*
26017134 AA-TAGAAA
1 AATTATAAA
*
26017142 ATAATATAAA
1 A-ATTATAAA
*
26017152 AATTCAAAAAA
1 AATT--ATAAA
26017163 AATTATAAA
1 AATTATAAA
* *
26017172 AAGTATAAG
1 AATTATAAA
26017181 AATT
1 AATT
26017185 CAAAAAAATA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
8 10 0.21
9 23 0.49
10 6 0.13
11 8 0.17
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (9 bp):
AATTATAAA
Found at i:26017201 original size:30 final size:29
Alignment explanation
Indices: 26017113--26017201 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 29
26017103 CACATCAACA
* *
26017113 AAATAATTTAAAAATT-ATAAAAATAGA-
1 AAATAATATAAAAATTCAAAAAAATAGAT
*
26017140 AAATAATATAAAAATTCAAAAAAA-ATTAT
1 AAATAATATAAAAATTCAAAAAAATA-GAT
*
26017169 AAA-AAGTATAAGAATTCAAAAAAATAGCAT
1 AAATAA-TATAAAAATTCAAAAAAATAG-AT
26017199 AAA
1 AAA
26017202 GTATACATGG
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
27 16 0.31
28 9 0.18
29 20 0.39
30 6 0.12
ACGTcount: A:0.67, C:0.03, G:0.04, T:0.25
Consensus pattern (29 bp):
AAATAATATAAAAATTCAAAAAAATAGAT
Found at i:26017503 original size:44 final size:45
Alignment explanation
Indices: 26017421--26017509 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 45
26017411 TATACCTTCT
*
26017421 AAAATTTATCATATAAGCTATTTTTATATCATTATTACTTATTAG
1 AAAAGTTATCATATAAGCTATTTTTATATCATTATTACTTATTAG
*
26017466 AAAAGTTATCATGTAAGCTA-TTTTATATCATTATTACTTATTAG
1 AAAAGTTATCATATAAGCTATTTTTATATCATTATTACTTATTAG
26017510 GCATATTCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 24 0.57
45 18 0.43
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (45 bp):
AAAAGTTATCATATAAGCTATTTTTATATCATTATTACTTATTAG
Found at i:26017866 original size:31 final size:31
Alignment explanation
Indices: 26017831--26017911 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
26017821 TATTTGAGAA
*
26017831 GCTCTTATTTGAACACTTTTAAAAAGATTTG
1 GCTCTTATTTGAACACTTTCAAAAAGATTTG
* *
26017862 GCTCTTATTAGAACACTTTCAAAAAGTTTTG
1 GCTCTTATTTGAACACTTTCAAAAAGATTTG
* *
26017893 GCTCGTATTTGAGCACTTT
1 GCTCTTATTTGAACACTTT
26017912 GAAAGTTTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (31 bp):
GCTCTTATTTGAACACTTTCAAAAAGATTTG
Found at i:26019514 original size:12 final size:12
Alignment explanation
Indices: 26019497--26019542 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
26019487 AACTTTTTAT
26019497 ATTTATTTATTC
1 ATTTATTTATTC
26019509 ATTTATTTATT-
1 ATTTATTTATTC
*
26019520 ATTTCTTTA-TC
1 ATTTATTTATTC
*
26019531 CTTTATTATATT
1 ATTTATT-TATT
26019543 TAAAATTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
10 1 0.04
11 13 0.46
12 13 0.46
13 1 0.04
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (12 bp):
ATTTATTTATTC
Found at i:26019528 original size:23 final size:22
Alignment explanation
Indices: 26019492--26019542 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
26019482 TCATTAACTT
26019492 TTTA-TATTTATTTATTCATTTA
1 TTTATTATTTATTTA-TCATTTA
* *
26019514 TTTATTATTTCTTTATCCTTTA
1 TTTATTATTTATTTATCATTTA
26019536 TTATATT
1 TT-TATT
26019543 TAAAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTATTATTTATTTATCATTTA
Found at i:26019747 original size:13 final size:14
Alignment explanation
Indices: 26019714--26019758 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
26019704 TGTATTTATT
26019714 TTTATTT-TATCAA
1 TTTATTTATATCAA
*
26019727 TCTA-TTATATC-A
1 TTTATTTATATCAA
26019739 TTTATTTATA-CAA
1 TTTATTTATATCAA
26019752 TTTATTT
1 TTTATTT
26019759 TATTTTATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 7 0.26
13 20 0.74
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTATTTATATCAA
Found at i:26024058 original size:17 final size:17
Alignment explanation
Indices: 26024038--26024075 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
26024028 AAATAGATTT
26024038 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
26024055 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
26024072 TTAA
1 TTAA
26024076 ACTTAAACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:26024803 original size:18 final size:17
Alignment explanation
Indices: 26024765--26024803 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
26024755 GGTTTGAAAA
26024765 TTTTAATTAATTAAATTT
1 TTTTAATTAA-TAAATTT
26024783 TTTTAATTAA-AAATTT
1 TTTTAATTAATAAATTT
26024799 ATTTT
1 -TTTT
26024804 CATCCCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 4 0.20
18 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTAATTAATAAATTT
Found at i:26026973 original size:6 final size:6
Alignment explanation
Indices: 26026962--26027004 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
26026952 AAAAACGCAT
26026962 GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG G
1 GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG G
26027005 ACCATCCAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (6 bp):
GTTTGG
Found at i:26031484 original size:5 final size:5
Alignment explanation
Indices: 26031474--26031507 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
26031464 GGGATAGATG
26031474 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGG
1 GAGGT GAGGT GAGGT GAGGT GAGGT GAGGT GAGG
26031508 GGAGAGAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.62, T:0.18
Consensus pattern (5 bp):
GAGGT
Found at i:26032035 original size:20 final size:20
Alignment explanation
Indices: 26031989--26032036 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
26031979 TAATTTAAAC
26031989 TAAAAATGTTACTAAATTTA
1 TAAAAATGTTACTAAATTTA
* *
26032009 CATAAAATTTTA-TAAATTCTA
1 TA-AAAATGTTACTAAATT-TA
26032030 TAAAAAT
1 TAAAAAT
26032037 AAATCAAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (20 bp):
TAAAAATGTTACTAAATTTA
Found at i:26034229 original size:15 final size:16
Alignment explanation
Indices: 26034209--26034241 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26034199 TATATATTTT
26034209 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
26034224 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
26034241 T
1 T
26034242 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:26034327 original size:22 final size:22
Alignment explanation
Indices: 26034288--26034352 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 22
26034278 GTTTTAAGAA
*
26034288 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
26034309 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* * *
26034331 GT-TTTTAA-ATATATTTTGAT
1 TTGTTTTAATATTTATTTTTAT
26034351 TT
1 TT
26034353 ATTATATTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
20 11 0.29
21 16 0.42
22 11 0.29
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:26034365 original size:27 final size:26
Alignment explanation
Indices: 26034316--26034379 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
26034306 TATTTGTTTT
*
26034316 AATA-TTT-ATTT-TTATGTTTTTAA
1 AATATTTTGATTTATTATATTTTTAA
26034339 ATATATTTTGATTTATTATATTTTTAA
1 A-ATATTTTGATTTATTATATTTTTAA
* *
26034366 AATTTTTTTATTTA
1 AATATTTTGATTTA
26034380 ATGAAATAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 1 0.03
24 3 0.09
25 3 0.09
26 15 0.44
27 12 0.35
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (26 bp):
AATATTTTGATTTATTATATTTTTAA
Found at i:26034558 original size:10 final size:11
Alignment explanation
Indices: 26034533--26034561 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
26034523 TTTATTTGGG
26034533 CCCGGCCCGAA
1 CCCGGCCCGAA
26034544 CCCGGCCCG-A
1 CCCGGCCCGAA
26034554 CCCGGCCC
1 CCCGGCCC
26034562 ATGATCACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.10, C:0.62, G:0.28, T:0.00
Consensus pattern (11 bp):
CCCGGCCCGAA
Found at i:26035721 original size:15 final size:16
Alignment explanation
Indices: 26035701--26035733 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26035691 TATATATTTT
26035701 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
26035716 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
26035733 T
1 T
26035734 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:26035818 original size:22 final size:22
Alignment explanation
Indices: 26035779--26035837 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
26035769 GTTTTAAGAA
*
26035779 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
26035800 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
26035822 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
26035838 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:26035854 original size:26 final size:24
Alignment explanation
Indices: 26035808--26035855 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
26035798 ATTTGTTTTA
*
26035808 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
26035832 ATATTTGATTTATTATATTTTTAA
1 ATATTT-ATTT-TTATATTTTTAA
26035856 TTTTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 4 0.19
26 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:26036191 original size:30 final size:31
Alignment explanation
Indices: 26036118--26036191 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
26036108 ATTTTAATTT
* *
26036118 AATAATGATAAAATTATACTTTAGTTTCTTAAA
1 AATAAT-AAAAAATTATA-TTTAATTTCTTAAA
*
26036151 AATAATAAAAAATTAT-TTTAATTTTTTAAA
1 AATAATAAAAAATTATATTTAATTTCTTAAA
*
26036181 AATTATAAAAA
1 AATAATAAAAA
26036192 TAATAAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 22 0.59
32 9 0.24
33 6 0.16
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (31 bp):
AATAATAAAAAATTATATTTAATTTCTTAAA
Found at i:26038767 original size:31 final size:31
Alignment explanation
Indices: 26038732--26038792 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
26038722 ACATCTAGTG
26038732 ACTTAAAT-AAAATCTTTTGAATAATTCAATA
1 ACTTAAATGAAAAT-TTTTGAATAATTCAATA
26038763 ACTTAAATGAAAATTTTTGAATAATTCAAT
1 ACTTAAATGAAAATTTTTGAATAATTCAAT
26038793 GACCAATTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 24 0.83
32 5 0.17
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (31 bp):
ACTTAAATGAAAATTTTTGAATAATTCAATA
Found at i:26040839 original size:21 final size:21
Alignment explanation
Indices: 26040815--26040857 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26040805 AAATTATATT
* *
26040815 AATAATGTTTTATTAAATGAA
1 AATAATCTTTTAGTAAATGAA
*
26040836 AATAATCTTTTAGTCAATGAA
1 AATAATCTTTTAGTAAATGAA
26040857 A
1 A
26040858 TTACATATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (21 bp):
AATAATCTTTTAGTAAATGAA
Found at i:26041522 original size:11 final size:10
Alignment explanation
Indices: 26041506--26041549 Score: 52
Period size: 11 Copynumber: 4.1 Consensus size: 10
26041496 TTAATTATTT
*
26041506 TTTAAAAAAA
1 TTTAAAAATA
26041516 TTATAAAAATA
1 TT-TAAAAATA
26041527 TTTTATAAAATA
1 -TTTA-AAAATA
26041539 TTTAAAAATA
1 TTTAAAAATA
26041549 T
1 T
26041550 AAAAGTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
10 9 0.30
11 13 0.43
12 8 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:26041536 original size:22 final size:22
Alignment explanation
Indices: 26041505--26041549 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
26041495 ATTAATTATT
26041505 TTTTAAAAAA-ATTATAAAAATA
1 TTTTAAAAAATATT-TAAAAATA
*
26041527 TTTTATAAAATATTTAAAAATA
1 TTTTAAAAAATATTTAAAAATA
26041549 T
1 T
26041550 AAAAGTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TTTTAAAAAATATTTAAAAATA
Found at i:26045534 original size:5 final size:5
Alignment explanation
Indices: 26045524--26045556 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
26045514 GTAATTGTTT
26045524 TTATA TTATA TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTA
26045557 AACAAATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:26045631 original size:13 final size:11
Alignment explanation
Indices: 26045605--26045680 Score: 55
Period size: 12 Copynumber: 6.4 Consensus size: 11
26045595 TAAATGAAAC
26045605 AAAAAGAATAGA
1 AAAAAGAA-AGA
26045617 AAAAGAGAAAG-
1 AAAA-AGAAAGA
*
26045628 GAAAAGAAACGA
1 AAAAAGAAA-GA
*
26045640 AACAAAGAAGGGA
1 AA-AAAGAA-AGA
26045653 AAGAAAGAAAGA
1 AA-AAAGAAAGA
*
26045665 AAAAGGGAAAGA
1 AAAA-AGAAAGA
26045677 AAAA
1 AAAA
26045681 TAAGGATAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
10 5 0.10
11 6 0.12
12 21 0.40
13 20 0.38
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (11 bp):
AAAAAGAAAGA
Found at i:26045641 original size:23 final size:22
Alignment explanation
Indices: 26045606--26045678 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 22
26045596 AAATGAAACA
26045606 AAAAGAATAGAAAAAGAGAAAGG
1 AAAAGAA-AGAAAAAGAGAAAGG
26045629 AAAAGAAACGAAACAA-AG-AAGG
1 AAAAGAAA-GAAA-AAGAGAAAGG
* *
26045651 GAAAGAAAG--AAAGAAAAAGG
1 AAAAGAAAGAAAAAGAGAAAGG
*
26045671 GAAAGAAA
1 AAAAGAAA
26045679 AATAAGGATA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
18 2 0.05
19 2 0.05
20 12 0.27
21 1 0.02
22 12 0.27
23 13 0.30
24 2 0.05
ACGTcount: A:0.70, C:0.03, G:0.26, T:0.01
Consensus pattern (22 bp):
AAAAGAAAGAAAAAGAGAAAGG
Found at i:26047232 original size:2 final size:2
Alignment explanation
Indices: 26047225--26047259 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26047215 TTTATAGACA
26047225 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26047260 AAACATATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26055900 original size:18 final size:17
Alignment explanation
Indices: 26055867--26055902 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26055857 ACTAAATTGG
26055867 AAATGAGAAAAATTAAT
1 AAATGAGAAAAATTAAT
*
26055884 AAATGATAAATAATTAAT
1 AAATGAGAAA-AATTAAT
26055902 A
1 A
26055903 GGAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (17 bp):
AAATGAGAAAAATTAAT
Found at i:26063642 original size:12 final size:12
Alignment explanation
Indices: 26063627--26063668 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
26063617 AAAAAGAATG
26063627 AAATAAGCAAAT
1 AAATAAGCAAAT
26063639 AAATAAG--AAT
1 AAATAAGCAAAT
26063649 GAAATAAGCAAAT
1 -AAATAAGCAAAT
26063662 AAATAAG
1 AAATAAG
26063669 TAAAAAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 3 0.11
11 7 0.26
12 14 0.52
13 3 0.11
ACGTcount: A:0.67, C:0.05, G:0.12, T:0.17
Consensus pattern (12 bp):
AAATAAGCAAAT
Found at i:26063648 original size:23 final size:23
Alignment explanation
Indices: 26063614--26063668 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
26063604 TTTAAAGATC
26063614 AATAAA-AAGAATGAAATAAGCA
1 AATAAATAAGAATGAAATAAGCA
26063636 AATAAATAAGAATGAAATAAGCA
1 AATAAATAAGAATGAAATAAGCA
26063659 AATAAATAAG
1 AATAAATAAG
26063669 TAAAAAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 6 0.19
23 26 0.81
ACGTcount: A:0.67, C:0.04, G:0.13, T:0.16
Consensus pattern (23 bp):
AATAAATAAGAATGAAATAAGCA
Found at i:26063688 original size:27 final size:27
Alignment explanation
Indices: 26063635--26063705 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
26063625 TGAAATAAGC
* * **
26063635 AAATAAATAAGAATGAAATAAGCAAAT
1 AAATAAATAAAAAAGAAATAAAAAAAT
*
26063662 AAATAAGTAAAAAAGAAATAAAAAAAT
1 AAATAAATAAAAAAGAAATAAAAAAAT
26063689 AATAATAATATAAAAAA
1 -A-AATAA-ATAAAAAA
26063706 TATAGCAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 22 0.63
28 1 0.03
29 5 0.14
30 7 0.20
ACGTcount: A:0.73, C:0.01, G:0.07, T:0.18
Consensus pattern (27 bp):
AAATAAATAAAAAAGAAATAAAAAAAT
Found at i:26063785 original size:25 final size:24
Alignment explanation
Indices: 26063757--26063848 Score: 68
Period size: 25 Copynumber: 3.8 Consensus size: 24
26063747 ATAGAGATAT
*
26063757 AATACTTAAAATATAATAATAAAAA
1 AATAC-TAAAATATAATAAGAAAAA
26063782 AATA-T-AAATA-AATAAGAAATAA
1 AATACTAAAATATAATAAGAAA-AA
26063804 AA-ACTAGATAA-ATAATAAGAAAATA
1 AATACTA-A-AATATAATAAGAAAA-A
*
26063829 AATAGATGAAAATATAATAA
1 AATA-CT-AAAATATAATAA
26063849 TAGTAATAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 20
0.71 0.03 0.26
Matches are distributed among these distances:
21 9 0.17
22 10 0.19
23 1 0.02
24 3 0.06
25 18 0.33
26 3 0.06
27 9 0.17
28 1 0.02
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (24 bp):
AATACTAAAATATAATAAGAAAAA
Found at i:26063801 original size:11 final size:11
Alignment explanation
Indices: 26063765--26063821 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
26063755 ATAATACTTA
26063765 AAATATAATAAT
1 AAATA-AATAAT
*
26063777 AAAAAAAT-AT
1 AAATAAATAAT
*
26063787 AAATAAATAAG
1 AAATAAATAAT
26063798 AAATAAA-AACT
1 AAATAAATAA-T
*
26063809 AGATAAATAAT
1 AAATAAATAAT
26063820 AA
1 AA
26063822 GAAAATAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
10 11 0.31
11 19 0.53
12 6 0.17
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.23
Consensus pattern (11 bp):
AAATAAATAAT
Found at i:26063806 original size:26 final size:26
Alignment explanation
Indices: 26063777--26063830 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
26063767 ATATAATAAT
*
26063777 AAAAAAATATAAATAAATAAG-AAATA
1 AAAAAAAGATAAAT-AATAAGAAAATA
**
26063803 AAAACTAGATAAATAATAAGAAAATA
1 AAAAAAAGATAAATAATAAGAAAATA
26063829 AA
1 AA
26063831 TAGATGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.19
Consensus pattern (26 bp):
AAAAAAAGATAAATAATAAGAAAATA
Found at i:26063850 original size:3 final size:3
Alignment explanation
Indices: 26063842--26063999 Score: 60
Period size: 3 Copynumber: 54.0 Consensus size: 3
26063832 AGATGAAAAT
* * * * *
26063842 ATA ATA ATA GTA ATA AT- ACA ATA GTA GTA ATA ATA AAA AGTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
* * * * * * * *
26063887 ATA AT- ATA TTAA ATA GTA A-A AAA ATA ATA GTA ACA GTA ATT TTA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
26063931 A-A A-A ATG ATA ATA GTA ATA ATA ATG ATA ATA AT- ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* * * *
26063974 GTA A-A ATA ATG ATA GTA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
26064000 TATATTAAAT
Statistics
Matches: 111, Mismatches: 35, Indels: 18
0.68 0.21 0.11
Matches are distributed among these distances:
2 13 0.12
3 92 0.83
4 6 0.05
ACGTcount: A:0.59, C:0.01, G:0.09, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:26063888 original size:16 final size:17
Alignment explanation
Indices: 26063852--26063892 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
26063842 ATAATAATAG
* *
26063852 TAATAATACAATAGTAG
1 TAATAATACAAAAGTAA
26063869 TAATAATA-AAAAGTAA
1 TAATAATACAAAAGTAA
26063885 TAATAATA
1 TAATAATA
26063893 TATTAAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (17 bp):
TAATAATACAAAAGTAA
Found at i:26063954 original size:28 final size:26
Alignment explanation
Indices: 26063903--26063954 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
26063893 TATTAAATAG
*
26063903 TAAAAAAATAATAGTAACAGTAATTT
1 TAAAAAAATAATAGTAACAATAATTT
*
26063929 TAAAAAATGATAATAGTAATAATAAT
1 TAAAAAA--ATAATAGTAACAATAAT
26063955 GATAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
28 15 0.68
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (26 bp):
TAAAAAAATAATAGTAACAATAATTT
Found at i:26064698 original size:6 final size:6
Alignment explanation
Indices: 26064676--26064710 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
26064666 AGTAGATTCG
26064676 AAAATA AGAAA-A AAAATA AAAATA AAAATA AAAAT
1 AAAATA A-AAATA AAAATA AAAATA AAAATA AAAAT
26064711 GAAATCACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 3 0.11
6 21 0.78
7 3 0.11
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:26065735 original size:45 final size:44
Alignment explanation
Indices: 26065665--26066185 Score: 272
Period size: 45 Copynumber: 11.7 Consensus size: 44
26065655 TTCAACCTGT
* * * * *
26065665 TCCACTGCAATTTCAAGGAAATAAGATTTGCTATCTTTAATTTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTG-TATCTTTAATCTGC
* *** * * * *
26065710 TCCACTATAACTTCAGGGAGATAAGACCCGCTAGCTTCAGTCTAC
1 TCCACTGTAACTTCAGGGAGATAAGATTTG-TATCTTTAATCTGC
* * * * * *
26065755 TCTACTGTAACTTTAGGGAGATAAGACTT-TAACTTCAACCTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTATCTTTAATCTGC
* * * * * *
26065798 TCCACTGCT-ACTTTAGGGAGATAAGATTATCTTTCTTCAGTCTAC
1 TCCACTG-TAACTTCAGGGAGATAAGATT-TGTATCTTTAATCTGC
* * * *
26065843 TCCGCTGTAACTTCAGGGAGATAAGACTT-TAACTTCAATCTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTATCTTTAATCTGC
* * * * *
26065886 TCCACTGCAAATTTAGGGAGATAAGACTTG--T-TTTGATCTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTATCTTTAATCTGC
* * * * *
26065927 TCTACTGCAACTTCAGAGAGATAAGATCTATAATTATAGCTTCAATCTG-
1 TCCACTGTAACTTCAGGGAGATAAGAT-T-T--GTAT--CTTTAATCTGC
* * *
26065976 TCCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGC
1 T-CCACTGTAACTTCAGGGAGATAAGATTTG-TATCTTTAATCTGC
* * *
26066022 TCCACTGCAACTTCAGGGAGATAAGACTTT-TA-CTTTCAACCTAC
1 TCCACTGTAACTTCAGGGAGATAAGA-TTTGTATCTTT-AATCTGC
* * * * ** **
26066066 TCTACTGTAACTTCA-AGAGATAAGGTTAGTGGCCATAATCTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTATCTTTAATCTGC
* * * * *
26066109 TCCACTGCAACTTCAGGGAGATAAGATTTGCCATTTTTAGTTTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTG-TATCTTTAATCTGC
* * *
26066154 TCCGCTGTAA-ATCTAGGGAGATAAGACTTGTA
1 TCCACTGTAACTTC-AGGGAGATAAGATTTGTA
26066186 AATTCACCAA
Statistics
Matches: 363, Mismatches: 89, Indels: 49
0.72 0.18 0.10
Matches are distributed among these distances:
41 30 0.08
42 3 0.01
43 101 0.28
44 39 0.11
45 149 0.41
46 4 0.01
47 4 0.01
48 1 0.00
49 2 0.01
50 30 0.08
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
TCCACTGTAACTTCAGGGAGATAAGATTTGTATCTTTAATCTGC
Found at i:26065823 original size:88 final size:88
Alignment explanation
Indices: 26065707--26066078 Score: 295
Period size: 88 Copynumber: 4.2 Consensus size: 88
26065697 ATCTTTAATT
** * * * *
26065707 TGCTCCACTATAACTTCAGGGAGATAAGACCCGCTAGCTTCAGTCTACTCTACTGTAACTTTAGG
1 TGCTCCACTGCAACTTTAGGGAGATAAGACCAGCTAGCTTCAGTCTACTCCACTGTAACTTCAGG
26065772 GAGATAAGACTTTAACTTCAACC
66 GAGATAAGACTTTAACTTCAACC
* ** * ** *
26065795 TGCTCCACTGCTACTTTAGGGAGATAAGATTATCTTTCTTCAGTCTACTCCGCTGTAACTTCAGG
1 TGCTCCACTGCAACTTTAGGGAGATAAGACCAGCTAGCTTCAGTCTACTCCACTGTAACTTCAGG
*
26065860 GAGATAAGACTTTAACTTCAATC
66 GAGATAAGACTTTAACTTCAACC
* ** * * * * * *
26065883 TGCTCCACTGCAAATTTAGGGAGATAAGACTTG-T--TTTGA-TCTGCTCTACTGCAACTTCAGA
1 TGCTCCACTGCAACTTTAGGGAGATAAGACCAGCTAGCTTCAGTCTACTCCACTGTAACTTCAGG
*
26065944 GAGATAAGATCTATAATTATAGCTTCAATC
66 GAGATAAGA-C--T--TTA-A-CTTCAACC
* * *** * * * *
26065974 TG-TCCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAG
1 TGCT-CCACTGCAACTTTAGGGAGATAAGACCAGCTAGCTTCAGTCTACTCCACTGTAACTTCAG
*
26066038 GGAGATAAGACTTTTACTTTCAACC
65 GGAGATAAGACTTTAAC-TTCAACC
* * *
26066063 TACTCTACTGTAACTT
1 TGCTCCACTGCAACTT
26066079 CAAGAGATAA
Statistics
Matches: 231, Mismatches: 39, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
84 26 0.11
85 4 0.02
87 2 0.01
88 103 0.45
89 21 0.09
90 5 0.02
91 35 0.15
92 2 0.01
94 4 0.02
95 29 0.13
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (88 bp):
TGCTCCACTGCAACTTTAGGGAGATAAGACCAGCTAGCTTCAGTCTACTCCACTGTAACTTCAGG
GAGATAAGACTTTAACTTCAACC
Found at i:26073362 original size:39 final size:39
Alignment explanation
Indices: 26073300--26073478 Score: 252
Period size: 39 Copynumber: 4.5 Consensus size: 39
26073290 TAATGGAGAA
*
26073300 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTG
* *
26073339 TTATATCCGGGCTAAATCTCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTG
*
26073378 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTG
* * * *
26073417 TTATATCCGGGCTAAAGTCCTGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCTAAA-TCCCGAAGGCATTCGTGCTGGTG
26073456 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-TAAA-TCCCG
26073479 CATGCTTTGT
Statistics
Matches: 126, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 109 0.87
40 17 0.13
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAATCCCGAAGGCATTCGTGCTGGTG
Found at i:26073398 original size:78 final size:78
Alignment explanation
Indices: 26073299--26073478 Score: 292
Period size: 78 Copynumber: 2.3 Consensus size: 78
26073289 ATAATGGAGA
26073299 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAA-T-CTCGAA
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCT-GAA
26073362 GGCATTTGTGCTGGT
65 GGC-TTTGTGCTGGT
* *
26073377 GTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCTGCAG
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCTGAAG
26073442 GCTTTGTGCTGGT
66 GCTTTGTGCTGGT
26073455 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
26073479 CATGCTTTGT
Statistics
Matches: 95, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
78 78 0.82
79 7 0.07
80 10 0.11
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (78 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCTGAAG
GCTTTGTGCTGGT
Found at i:26081575 original size:3 final size:3
Alignment explanation
Indices: 26081567--26081954 Score: 214
Period size: 3 Copynumber: 129.0 Consensus size: 3
26081557 AATATAAATC
26081567 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26081615 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * * * * *
26081662 GCA ATA GTA A-A ATT ATG ATA TTA ATA CATA A-A TATAA ATA GAGA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA -AT-A ATA -ATA -ATA
* * * *
26081710 ATA CTTA A-A AT- ATA ATA ATA ACA AAA AT- ATAA ATAA ATA AGAA ATA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A ATA A-TA ATA
* * *
26081756 AAA ACTA GAAA ATA ATA AGA A-A ATAA ATA GATGA A-A AT- ATA ATA
1 ATA A-TA -ATA ATA ATA ATA ATA AT-A ATA -AT-A ATA ATA ATA ATA
* * * * *
26081800 ATA GTA ATA AT- ACA ATA GTA GTA ATA ATA AAA AGTA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
* * * * * * * *
26081844 ATA TTAA ATA GTA A-A AAA ATA ATA GTA ACA GTA ATT TTA A-A A-A
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
26081887 ATG ATA ATA GTA ATA ATA ATA ATA ATG ATA ATA AT- ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* * *
26081932 GTA A-A ATA ATG ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
26081955 TATATTAAAT
Statistics
Matches: 294, Mismatches: 61, Indels: 60
0.71 0.15 0.14
Matches are distributed among these distances:
2 30 0.10
3 228 0.78
4 33 0.11
5 3 0.01
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:26081840 original size:16 final size:17
Alignment explanation
Indices: 26081804--26081844 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
26081794 ATAATAATAG
* *
26081804 TAATAATACAATAGTAG
1 TAATAATACAAAAGTAA
26081821 TAATAATA-AAAAGTAA
1 TAATAATACAAAAGTAA
26081837 TAATAATA
1 TAATAATA
26081845 TATTAAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (17 bp):
TAATAATACAAAAGTAA
Found at i:26081906 original size:28 final size:26
Alignment explanation
Indices: 26081855--26081906 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
26081845 TATTAAATAG
*
26081855 TAAAAAAATAATAGTAACAGTAATTT
1 TAAAAAAATAATAGTAACAATAATTT
*
26081881 TAAAAAATGATAATAGTAATAATAAT
1 TAAAAAA--ATAATAGTAACAATAAT
26081907 AATAATGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
28 15 0.68
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (26 bp):
TAAAAAAATAATAGTAACAATAATTT
Found at i:26083496 original size:19 final size:20
Alignment explanation
Indices: 26083467--26083506 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
26083457 CTTTCGAGAA
26083467 TAAAAACAATTGACTTTAGG
1 TAAAAACAATTGACTTTAGG
26083487 TAAAAA-AATTGACTTTAGG
1 TAAAAACAATTGACTTTAGG
26083506 T
1 T
26083507 TGAACAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.33
Consensus pattern (20 bp):
TAAAAACAATTGACTTTAGG
Found at i:26083515 original size:19 final size:19
Alignment explanation
Indices: 26083469--26083517 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
26083459 TTCGAGAATA
26083469 AAAACAATTGACTTTAGGT
1 AAAACAATTGACTTTAGGT
*
26083488 AAAAAAATTGACTTTAGGT
1 AAAACAATTGACTTTAGGT
**
26083507 TGAACAATTGA
1 AAAACAATTGA
26083518 AATCTCTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.31
Consensus pattern (19 bp):
AAAACAATTGACTTTAGGT
Found at i:26086699 original size:46 final size:46
Alignment explanation
Indices: 26086632--26086859 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
26086622 AGTGTGCTCT
26086632 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26086678 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26086724 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
26086770 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
26086816 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
26086860 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26091952 original size:46 final size:46
Alignment explanation
Indices: 26091885--26092111 Score: 348
Period size: 46 Copynumber: 5.0 Consensus size: 46
26091875 GAGTGTGTCT
26091885 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26091931 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26091977 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
26092023 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
26092069 ATGACA-AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
26092112 TCATGTCAAA
Statistics
Matches: 169, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
45 31 0.18
46 138 0.82
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26094123 original size:20 final size:19
Alignment explanation
Indices: 26094072--26094123 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
26094062 AAAAATATGA
26094072 ATTTTGAAATTTTTATAAAT
1 ATTTTGAAA-TTTTATAAAT
*
26094092 ATTTT-TAATTTTATAAATT
1 ATTTTGAAATTTTATAAA-T
*
26094111 ATTTTGCAATTTT
1 ATTTTGAAATTTT
26094124 TTTAATAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 11 0.39
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
ATTTTGAAATTTTATAAAT
Found at i:26096959 original size:20 final size:21
Alignment explanation
Indices: 26096934--26096986 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 21
26096924 AAAAAAATGA
26096934 ATTTTGGAATTTTTATAAA-T
1 ATTTTGGAATTTTTATAAATT
26096954 ATTTT-GAA-TTTTATAAATT
1 ATTTTGGAATTTTTATAAATT
*
26096973 ATTTTGCAATTTTT
1 ATTTTGGAATTTTT
26096987 GTTGATAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 9 0.31
19 9 0.31
20 7 0.24
21 4 0.14
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTTTGGAATTTTTATAAATT
Found at i:26096964 original size:19 final size:20
Alignment explanation
Indices: 26096934--26096986 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 20
26096924 AAAAAAATGA
26096934 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAATTTTTATAAATT
26096954 ATTTTGAA-TTTTATAAATT
1 ATTTTGAATTTTTATAAATT
26096973 ATTTTGCAATTTTT
1 ATTTTG-AATTTTT
26096987 GTTGATAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.30
19 10 0.33
20 7 0.23
21 4 0.13
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:26096967 original size:18 final size:19
Alignment explanation
Indices: 26096934--26096985 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 19
26096924 AAAAAAATGA
26096934 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAA-TTTTATAAATT
26096954 ATTTTGAATTTTATAAATT
1 ATTTTGAATTTTATAAATT
26096973 ATTTTGCAATTTT
1 ATTTTG-AATTTT
26096986 TGTTGATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.30
19 10 0.33
20 11 0.37
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (19 bp):
ATTTTGAATTTTATAAATT
Found at i:26099309 original size:10 final size:10
Alignment explanation
Indices: 26099287--26099334 Score: 78
Period size: 10 Copynumber: 4.8 Consensus size: 10
26099277 TCAAATTCTA
*
26099287 AAAGATAAAT
1 AAAGATAATT
*
26099297 AAAAATAATT
1 AAAGATAATT
26099307 AAAGATAATT
1 AAAGATAATT
26099317 AAAGATAATT
1 AAAGATAATT
26099327 AAAGATAA
1 AAAGATAA
26099335 ATGAAAATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (10 bp):
AAAGATAATT
Found at i:26099310 original size:20 final size:20
Alignment explanation
Indices: 26099287--26099342 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
26099277 TCAAATTCTA
26099287 AAAGATAAATAAAAATAATT
1 AAAGATAAATAAAAATAATT
* *
26099307 AAAGATAATTAAAGATAATT
1 AAAGATAAATAAAAATAATT
*
26099327 AAAGATAAATGAAAAT
1 AAAGATAAATAAAAAT
26099343 GAATCCTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAAATAATT
Found at i:26100746 original size:29 final size:31
Alignment explanation
Indices: 26100698--26100761 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
26100688 TTTATAATTA
*
26100698 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTGT-TTTAATAT
*
26100729 TTTAATAAGAT-ATT-TTATTGTTTTATTAT
1 TTTAATAAGATAATTATTATTGTTTTAATAT
26100758 TTTA
1 TTTA
26100762 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTGTTTTAATAT
Found at i:26100786 original size:2 final size:2
Alignment explanation
Indices: 26100781--26100806 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26100771 TATATATATA
26100781 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
26100807 GAAAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:26102353 original size:21 final size:21
Alignment explanation
Indices: 26102314--26102353 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26102304 GTAATTTTGT
* * *
26102314 TTAGAGCATTAATTGAATGTA
1 TTAGAACATTAAATAAATGTA
26102335 TTAGAACATTAAATAAATG
1 TTAGAACATTAAATAAATG
26102354 AAAATGACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (21 bp):
TTAGAACATTAAATAAATGTA
Found at i:26104590 original size:46 final size:45
Alignment explanation
Indices: 26104534--26104744 Score: 162
Period size: 46 Copynumber: 4.6 Consensus size: 45
26104524 TGGTATGTGT
26104534 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGGGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TATTATGGGA
* * * *
26104580 GCCAGTGTAAGACATGTCTGAGACCTGGATCGG--TATTGA-GACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTATT-ATG--G-GA
* * **
26104626 GCTAGTGTAAGACATGCCTGGGACATGCATCAGCCTCGAGTTATACGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT--A-TTATGGGA
* * * * * *
26104674 GCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTATTGTGTG-
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTATTATGGGA
* *
26104719 TC-AGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
26104745 GCATTGACAC
Statistics
Matches: 134, Mismatches: 20, Indels: 25
0.75 0.11 0.14
Matches are distributed among these distances:
43 6 0.04
44 24 0.18
45 2 0.01
46 62 0.46
47 1 0.01
48 27 0.20
49 8 0.06
50 2 0.01
51 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTATTATGGGA
Found at i:26104795 original size:49 final size:49
Alignment explanation
Indices: 26104720--26104850 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 49
26104710 TATTGTGTGT
* * *
26104720 CAGTGTAAGACCTGTCTGGGACATGGCATTGACAC-CAATAGATGAAAGC
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAAGC
* * * *
26104769 CATTGTAAAAACTGTCTGGGACATGGCATCGACCTCGATATATGAAAGT
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
* *
26104818 CAGTGTAAAACCTGTTTGGGACATGGCATCGAC
1 CAGTGTAAAAACTGTCTGGGACATGGCATCGAC
26104851 TTTGATGTGC
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 1 0.01
49 70 0.99
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (49 bp):
CAGTGTAAAAACTGTCTGGGACATGGCATCGACCTCAATAGATGAAAGC
Found at i:26111304 original size:21 final size:20
Alignment explanation
Indices: 26111280--26111319 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26111270 ATATTCAAGT
26111280 TCCACACGGGCGTGTTGCCCA
1 TCCACACGGGCGTG-TGCCCA
*
26111301 TCCACATGGGCGTGTGCCC
1 TCCACACGGGCGTGTGCCC
26111320 TGTGTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (20 bp):
TCCACACGGGCGTGTGCCCA
Found at i:26113148 original size:108 final size:104
Alignment explanation
Indices: 26112942--26113135 Score: 257
Period size: 108 Copynumber: 1.8 Consensus size: 104
26112932 AGGAGAGGAG
26112942 GGTGTGGTGAAGGGGAAAAGTATGCCGGTGCCACGTGAAGCGGATGAGAGGAGGAAGAGGACGAA
1 GGTGTGGTGAAGGGGAAAAGTATGCCGGTGCCACGTGAAGCGGATGAGAGGAGGAAGAGGACG--
** *
26113007 CCATGTAGGTCGACCGAAGAAGAGGGTGATGTTGCACCACTTA
64 --ATGTAGGTCGAAAGAAGAAGAGGATGATGTTGCACCACTTA
* * * *
26113050 GGTGTGGTGAAGGGGAAAAGTGTGCCGGTGTCGCGTGAAGCGGATGAGAGGAGGAAGAGGATG-T
1 GGTGTGGTGAAGGGGAAAAGTATGCCGGTGCCACGTGAAGCGGATGAGAGGAGGAAGAGGACGAT
*
26113114 G-AGGTGGAGAAGAAGAAGAGGA
66 GTAGGTCGA-AAGAAGAAGAGGA
26113136 ATATACGCTG
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
102 6 0.08
103 12 0.16
108 59 0.77
ACGTcount: A:0.30, C:0.11, G:0.44, T:0.15
Consensus pattern (104 bp):
GGTGTGGTGAAGGGGAAAAGTATGCCGGTGCCACGTGAAGCGGATGAGAGGAGGAAGAGGACGAT
GTAGGTCGAAAGAAGAAGAGGATGATGTTGCACCACTTA
Found at i:26113505 original size:5 final size:5
Alignment explanation
Indices: 26113450--26113498 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
26113440 TCAACATCTA
* * *
26113450 AAAAT AAAAT AATAA- ATAAT AAAAT AAAGT ACAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
26113499 AATAAAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
4 2 0.06
5 32 0.89
6 2 0.06
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:26121738 original size:16 final size:16
Alignment explanation
Indices: 26121717--26121750 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26121707 GTGTAACGCC
*
26121717 CCAAAAATCTCGAAAT
1 CCAAAAATCCCGAAAT
26121733 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
26121749 CC
1 CC
26121751 CAAATTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.32, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:26123144 original size:29 final size:28
Alignment explanation
Indices: 26123075--26123160 Score: 93
Period size: 28 Copynumber: 3.0 Consensus size: 28
26123065 GTGAGCATGA
* * *
26123075 ATATGAATGTGACTGGGCCTAACGGGTC
1 ATATGAATGTGATTGGGCCTAATGGGCC
26123103 ATAT-AAGTGTGATTTGGGCCTAATGGGCC
1 ATATGAA-TGTGA-TTGGGCCTAATGGGCC
* * *
26123132 ATATGAATATGATTGGGCTTAGTGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
26123160 A
1 A
26123161 GATACATGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.04
28 24 0.49
29 21 0.43
30 2 0.04
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:26129334 original size:16 final size:16
Alignment explanation
Indices: 26129313--26129345 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26129303 TTGTAACGTC
*
26129313 CCAAAAATCCCGAAAT
1 CCAAAAATCCCAAAAT
26129329 CCAAAAATCCCAAAAT
1 CCAAAAATCCCAAAAT
26129345 C
1 C
26129346 TTGAATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.33, G:0.03, T:0.12
Consensus pattern (16 bp):
CCAAAAATCCCAAAAT
Found at i:26130494 original size:24 final size:24
Alignment explanation
Indices: 26130453--26130503 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
26130443 ATGTATCGGC
*
26130453 AAAAGTCGAAATGTCGAAATA-CCG
1 AAAAGTCGAAATGCCGAAA-AGCCG
26130477 AAAAGTC-AAATTGCCGAAAAGCCG
1 AAAAGTCGAAA-TGCCGAAAAGCCG
26130501 AAA
1 AAA
26130504 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.49, C:0.18, G:0.20, T:0.14
Consensus pattern (24 bp):
AAAAGTCGAAATGCCGAAAAGCCG
Found at i:26130762 original size:29 final size:29
Alignment explanation
Indices: 26130729--26130813 Score: 98
Period size: 29 Copynumber: 2.9 Consensus size: 29
26130719 AATATGACTG
* *
26130729 GGCCTAACGGGGCATATAAATGTGATTTA
1 GGCCTAATGGGCCATATAAATGTGATTTA
* * * *
26130758 GGCCTAATGGGCCATATACAGGTAATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTA
* *
26130787 GGCCTAATGGGCCATATGAATATGATT
1 GGCCTAATGGGCCATATAAATGTGATT
26130814 GGGCTTAGTG
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTA
Found at i:26146667 original size:127 final size:126
Alignment explanation
Indices: 26146511--26146962 Score: 573
Period size: 127 Copynumber: 3.5 Consensus size: 126
26146501 AGTCCAACGA
* * * * * *
26146511 AAAACCGAAACCTAGCACGGTAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGC
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCC-CGAATTTCCAAACACTAAACATTGCCTTGT
* * * * * *
26146576 TTTAGCATTTAGAAAACACGAGTAAAATTCTAAAGGAATATTCAATCATTTTGAACAAACCG
65 TTTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAACCG
* * * * *
26146638 AAAATCGTAACCCAGCACGATTGGGCACGATTCCCTGCATTTCCAAACACTAAATATTGCATTGT
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCC-GAATTTCCAAACACTAAACATTGCCTTGT
* *
26146703 TTTAGTATTTGGAAAACACAAGTGAAATTTTAAAGGAATATTCGATTATTTTGAACAAACCG
65 TTTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAACCG
* * * * * *
26146765 AAAATCGAAACCCAGCACGATTGGACACTATTCCCCACATTTCCAAACACTGAATATTGCCTTGT
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCCGA-ATTTCCAAACACTAAACATTGCCTTGT
* *
26146830 TTTAGTATTTGGAAAACACGAGTGAAATTATAAAAGGAATATTCGATTATTTTGAACGAACGG
65 TTTAGTATTTGGAAAACACGAGTGAAATTAT-AAAGGAATATTCGATTATTTTGAACAAACCG
* *
26146893 GAAATCGAAACCCAGTACGATAGGGCACGATTCCTCGAATTTCCAAACA-TCAAACATTGCCTTC
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCC-CGAATTTCCAAACACT-AAACATTGCCTT-
26146957 GTTTTA
63 GTTTTA
26146963 AAGAATTTTC
Statistics
Matches: 282, Mismatches: 37, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
126 1 0.00
127 194 0.69
128 79 0.28
129 8 0.03
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (126 bp):
AAAATCGAAACCCAGCACGATAGGGCACGATTCCCGAATTTCCAAACACTAAACATTGCCTTGTT
TTAGTATTTGGAAAACACGAGTGAAATTATAAAGGAATATTCGATTATTTTGAACAAACCG
Found at i:26151777 original size:10 final size:10
Alignment explanation
Indices: 26151753--26151794 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
26151743 AATTAAATTC
26151753 TAAAAGATAAA
1 TAAAA-ATAAA
*
26151764 TAAAAATAAT
1 TAAAAATAAA
*
26151774 TAAATATAAA
1 TAAAAATAAA
26151784 TAAAAATAAA
1 TAAAAATAAA
26151794 T
1 T
26151795 CCTAAAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 22 0.81
11 5 0.19
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:26151806 original size:13 final size:12
Alignment explanation
Indices: 26151746--26151818 Score: 50
Period size: 10 Copynumber: 6.2 Consensus size: 12
26151736 TATTCCTAAT
26151746 TAAATTCTAAAAGA
1 TAAA-TCTAAAA-A
26151760 TAAA--TAAAAA
1 TAAATCTAAAAA
*
26151770 T-AAT-TAAATA
1 TAAATCTAAAAA
26151780 TAAA--TAAAAA
1 TAAATCTAAAAA
*
26151790 TAAATCCTAAAAT
1 TAAAT-CTAAAAA
26151803 TAAATCTAAATAA
1 TAAATCTAAA-AA
26151816 TAA
1 TAA
26151819 TCCTTTATAA
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
9 2 0.04
10 17 0.35
11 7 0.14
12 5 0.10
13 14 0.29
14 4 0.08
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.29
Consensus pattern (12 bp):
TAAATCTAAAAA
Found at i:26170093 original size:8 final size:8
Alignment explanation
Indices: 26170084--26170120 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
26170074 TTTATTTTAT
26170084 TTTATTA-
1 TTTATTAC
26170091 TTTATTAC
1 TTTATTAC
26170099 TTTATTAC
1 TTTATTAC
26170107 TTTATTAC
1 TTTATTAC
26170115 TTTATT
1 TTTATT
26170121 TGTTTGGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 7 0.24
8 22 0.76
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (8 bp):
TTTATTAC
Found at i:26170111 original size:20 final size:18
Alignment explanation
Indices: 26170055--26170112 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
26170045 AGACAACCCA
26170055 ATTTTTA-TTT-TTCTTT
1 ATTTTTACTTTATTCTTT
* *
26170071 ATTTTTATTTTATTTTATT
1 ATTTTTACTTTATTCT-TT
26170090 ATTTATTACTTTATTACTTT
1 ATTT-TTACTTTATT-CTTT
26170110 ATT
1 ATT
26170113 ACTTTATTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 7 0.21
17 3 0.09
18 3 0.09
19 6 0.18
20 14 0.41
21 1 0.03
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTTACTTTATTCTTT
Found at i:26170112 original size:16 final size:15
Alignment explanation
Indices: 26170059--26170120 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 15
26170049 AACCCAATTT
26170059 TTATTT-TT-CTTTA
1 TTATTTATTACTTTA
*
26170072 TT-TTTATTTTATTTTA
1 TTATTTA--TTACTTTA
26170088 TTATTTATTACTTTA
1 TTATTTATTACTTTA
26170103 TTACTTTATTACTTTA
1 TTA-TTTATTACTTTA
26170119 TT
1 TT
26170121 TGTTTGGATA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
12 3 0.07
13 2 0.05
15 12 0.29
16 20 0.49
17 4 0.10
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTTATTACTTTA
Found at i:26175277 original size:49 final size:49
Alignment explanation
Indices: 26175204--26175320 Score: 164
Period size: 49 Copynumber: 2.4 Consensus size: 49
26175194 TGTTGTGTGT
* * * *
26175204 CAGTGTAAGACCTGCCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGAACATGGCATCGAC-CTCGATAGATGAAAGC
* *
26175253 CAGTGTAAGAGCTGTCTAGAACATGGCATCGACCTCGATATATGAAAGC
1 CAGTGTAAGACCTGTCTAGAACATGGCATCGACCTCGATAGATGAAAGC
26175302 CAGTGTAAGACCTGTCTAG
1 CAGTGTAAGACCTGTCTAG
26175321 GACACAACAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 1 0.02
49 59 0.98
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTAGAACATGGCATCGACCTCGATAGATGAAAGC
Found at i:26176947 original size:113 final size:113
Alignment explanation
Indices: 26176733--26176948 Score: 337
Period size: 113 Copynumber: 1.9 Consensus size: 113
26176723 TTTAGGAATG
* *
26176733 TGTTGGGTTGAGTAACTGGGGTGGGATGCTTGGCTGTTATCTCTCTTCGCGTCAAAAGGTTCAAT
1 TGTTGGGTTGAGTAACCGGGGTGGGATGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAAT
* * *
26176798 ATATTCTTAAGAAAAATATATATATATATATATAATAAATTAGGAGAA
66 ATATTCTTAAGAAAAATAAATAAAGATATATATAATAAATTAGGAGAA
*
26176846 TGTTGGGTTGAGTAACCGGGGTAGGG-TGCTTGGCTGTCATCTCTCTTTGCGTCAAAAGGTTCAA
1 TGTTGGGTTGAGTAACCGGGGT-GGGATGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAA
*
26176910 TATATTCTTAAGAAAAATAAAATAAAGATGTAT-TAATAA
65 TATATTCTTAAGAAAAAT-AAATAAAGATATATATAATAA
26176949 TAAAATTGCA
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
113 81 0.86
114 13 0.14
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (113 bp):
TGTTGGGTTGAGTAACCGGGGTGGGATGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAAT
ATATTCTTAAGAAAAATAAATAAAGATATATATAATAAATTAGGAGAA
Found at i:26194649 original size:13 final size:13
Alignment explanation
Indices: 26194631--26194660 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26194621 GCTCGGCAGG
*
26194631 GACACGTCCGTGT
1 GACACGGCCGTGT
26194644 GACACGGCCGTGT
1 GACACGGCCGTGT
26194657 GACA
1 GACA
26194661 TGATTGTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.17
Consensus pattern (13 bp):
GACACGGCCGTGT
Found at i:26197989 original size:116 final size:117
Alignment explanation
Indices: 26197842--26198068 Score: 314
Period size: 117 Copynumber: 1.9 Consensus size: 117
26197832 GAGTTTTTAA
* * *
26197842 AACCCACACGGCCCGGACACACGAGCGTGTCCTTGGCCATAT-GAAATTTCATACTTAGTTTTAA
1 AACCCACACGGCCCGGACACACAAGCGTGTCCCTGGCCATATGGAAATTTCAGACTTAGTTTTAA
* *
26197906 ACATTTTAAAGAAATCGACATTGAGTTACACGGCCTGG-CGACACGGCCGTGT
66 ACATTTTAAAAAAATCGACAGTGAGTTACACGGCCTGGAC-ACACGGCCGTGT
* * * * *
26197958 AACCCACATGGCCTGGACACACAAGCGTGTCCCTGGCCATGTGGAATTTTTAGACTTAGTTTTAA
1 AACCCACACGGCCCGGACACACAAGCGTGTCCCTGGCCATATGGAAATTTCAGACTTAGTTTTAA
** *
26198023 ATTTTTTAAAAAAATTGACAGTGAGTTACACGGCCTGGACACACGG
66 ACATTTTAAAAAAATCGACAGTGAGTTACACGGCCTGGACACACGG
26198069 GCTTGTCCTT
Statistics
Matches: 96, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
116 37 0.39
117 58 0.60
118 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (117 bp):
AACCCACACGGCCCGGACACACAAGCGTGTCCCTGGCCATATGGAAATTTCAGACTTAGTTTTAA
ACATTTTAAAAAAATCGACAGTGAGTTACACGGCCTGGACACACGGCCGTGT
Found at i:26199095 original size:18 final size:16
Alignment explanation
Indices: 26199072--26199118 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
26199062 TTACTATTAT
*
26199072 TATTATTTATTTTTTC
1 TATTATTTATTTATTC
26199088 TTATTTATTTATTTATTC
1 -TA-TTATTTATTTATTC
26199106 TATTATTGTATTT
1 TATTATT-TATTT
26199119 CTTTATTGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 5 0.19
17 9 0.33
18 13 0.48
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.72
Consensus pattern (16 bp):
TATTATTTATTTATTC
Found at i:26201642 original size:6 final size:6
Alignment explanation
Indices: 26201633--26201673 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
26201623 TCTAAGTCTA
* *
26201633 TTTATT TTTA-T TTTATT TTTGTT TTTATT TTT-CT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
26201674 ACTTTTTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
5 9 0.31
6 20 0.69
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:26201649 original size:11 final size:11
Alignment explanation
Indices: 26201633--26201673 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
26201623 TCTAAGTCTA
26201633 TTTATTTTTAT
1 TTTATTTTTAT
*
26201644 TTTATTTTTGTT
1 TTTATTTTT-AT
*
26201656 TTTATTTTTCT
1 TTTATTTTTAT
26201667 TTTATTT
1 TTTATTT
26201674 ACTTTTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:26204939 original size:18 final size:17
Alignment explanation
Indices: 26204907--26204958 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 17
26204897 ATTGAGTCCA
26204907 TTTATTTTA-TTTTATT
1 TTTATTTTAGTTTTATT
26204923 TTTAGTTTTAGTTTTATT
1 TTTA-TTTTAGTTTTATT
* *
26204941 TCTATTTTTAGGTTTATT
1 TTTA-TTTTAGTTTTATT
26204959 GTTTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 4 0.13
17 5 0.16
18 22 0.71
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (17 bp):
TTTATTTTAGTTTTATT
Found at i:26204958 original size:12 final size:12
Alignment explanation
Indices: 26204907--26204958 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
26204897 ATTGAGTCCA
26204907 TTTA-TTTTA-T
1 TTTATTTTTAGT
26204917 TTTATTTTTAGT
1 TTTATTTTTAGT
*
26204929 TTTAGTTTTA-T
1 TTTATTTTTAGT
*
26204940 TTCTATTTTTAGG
1 TT-TATTTTTAGT
26204953 TTTATT
1 TTTATT
26204959 GTTTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
10 4 0.11
11 8 0.23
12 21 0.60
13 2 0.06
ACGTcount: A:0.17, C:0.02, G:0.08, T:0.73
Consensus pattern (12 bp):
TTTATTTTTAGT
Found at i:26208796 original size:2 final size:2
Alignment explanation
Indices: 26208789--26208816 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26208779 AAAATTTAAG
26208789 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26208817 AACCTAACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26208861 original size:17 final size:18
Alignment explanation
Indices: 26208836--26208869 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26208826 AATATAGTAA
*
26208836 AATATAAATTATAAAAAT
1 AATATAAATAATAAAAAT
26208854 AATA-AAATAATAAAAA
1 AATATAAATAATAAAAA
26208870 AAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AATATAAATAATAAAAAT
Found at i:26209230 original size:150 final size:148
Alignment explanation
Indices: 26208918--26209231 Score: 368
Period size: 150 Copynumber: 2.1 Consensus size: 148
26208908 AAGACTTTAG
* *
26208918 CACAAACAATTTTTTTTACAATCAAAAATATAATCTTAAACATTAAATTTAAGTATTAAAAATAA
1 CACAAACAATTTTTTTTACAATCAAAAATATAATATTAAACATTAAATTAAAGTATTAAAAATAA
*
26208983 AAAAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAACTTAAAACTATCATAAA
66 AAAAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAACTTAAAACTATCACAAA
* *
26209048 CTATCTCTAAAACTCCGA
131 CTATCCCTAAAACTCCAA
* * *
26209066 CACAAACAAATTTTTTATA-AA-CAAAAATATAATATTAAATATTTAATCTAAAG-ATTAAAAAT
1 CACAAAC-AATTTTTTTTACAATCAAAAATATAATATTAAACATTAAAT-TAAAGTATTAAAAAT
* * * * *
26209128 AAATTAAAATATAAGCATATAATATACAAATTATTATTAC-AAC-AATAAAACACATTAAAACTT
64 AAA--AAAATA-AA-CATAAAATATAAAAATTATTATTACAAACTAAAAAAAAAC-TTAAAACTA
** * * *
26209191 TCACAATTTCTCCCTAAAATTCTAA
124 TCACAAACTATCCCTAAAACTCCAA
26209216 CACAAACAATTTTTTT
1 CACAAACAATTTTTTT
26209232 CCTTCCAAAA
Statistics
Matches: 140, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
147 35 0.25
148 13 0.09
149 32 0.23
150 37 0.26
151 23 0.16
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (148 bp):
CACAAACAATTTTTTTTACAATCAAAAATATAATATTAAACATTAAATTAAAGTATTAAAAATAA
AAAAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAACTTAAAACTATCACAAA
CTATCCCTAAAACTCCAA
Found at i:26209241 original size:150 final size:146
Alignment explanation
Indices: 26208918--26209241 Score: 332
Period size: 147 Copynumber: 2.2 Consensus size: 146
26208908 AAGACTTTAG
* * *
26208918 CACAAACAATTTTTTTTACAATCAAAAATATAATCTTAAACATTAAATTTAAGTATTAAAAATAA
1 CACAAACAA-TTTTTTT-CATTCAAAAATATAATATTAAACATTAAATTAAAGTATTAAAAATAA
*
26208983 AAAAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAACTTAAAACTATCATAAA
64 AAAAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAACTTAAAACTATCACAAA
* *
26209048 CTATCTCTAAAACTCCGA
129 CTATCCCTAAAACTCCAA
** * *
26209066 CACAAACAAATTTTTTAT-AAACAAAAATATAATATTAAATATTTAATCTAAAG-ATTAAAAATA
1 CACAAAC-AATTTTTT-TCATTCAAAAATATAATATTAAACATTAAAT-TAAAGTATTAAAAATA
* * * * *
26209129 AATTAAAATATAAGCATATAATATACAAATTATTATTAC-AAC-AATAAAACACATTAAAACTTT
63 AA--AAAATA-AA-CATAAAATATAAAAATTATTATTACAAACTAAAAAAAAAC-TTAAAACTAT
** * * *
26209192 CACAATTTCTCCCTAAAATTCTAA
123 CACAAACTATCCCTAAAACTCCAA
* *
26209216 CACAAACAATTTTTTTCCTTCCAAAA
1 CACAAACAATTTTTTTCATTCAAAAA
26209242 CTTCAATACA
Statistics
Matches: 145, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
147 37 0.26
148 18 0.12
149 30 0.21
150 37 0.26
151 23 0.16
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.31
Consensus pattern (146 bp):
CACAAACAATTTTTTTCATTCAAAAATATAATATTAAACATTAAATTAAAGTATTAAAAATAAAA
AAATAAACATAAAATATAAAAATTATTATTACAAACTAAAAAAAAACTTAAAACTATCACAAACT
ATCCCTAAAACTCCAA
Found at i:26212753 original size:355 final size:354
Alignment explanation
Indices: 26212093--26212801 Score: 1364
Period size: 355 Copynumber: 2.0 Consensus size: 354
26212083 TTTTAATAAA
*
26212093 TATCTCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATGCATCTGCATAATTC
1 TATCTCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATCCATCTGCATAATTC
*
26212158 CTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGTCTTATGATTCCGAACAAAATCTTTGA
66 CTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCCGAACAAAATCTTTGA
*
26212223 AGGGTTACAAAGTCGAGATGTGGATATCCACCAAGAACCAAATCAATAGCGGGCGTGGTTGACCA
131 AGGGTTACAAAGTCGAGATGTGGATATCCACCAAGAACCAAACCAATAGCGGGCGTGGTTGACCA
26212288 ACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAGA
196 ACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAGA
*
26212353 TCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCGAGAGTACATGTAT
261 TCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCAAGAGTACATGTAT
26212418 TTAATAGATGGAAGAGAGAGGTTAGCACT
326 TTAATAGATGGAAGAGAGAGGTTAGCACT
26212447 TATCTCCCCTATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATCCATCTGCATAATT
1 TATCTCCCC-ATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATCCATCTGCATAATT
26212512 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCCGAACAAAATCTTTG
65 CCTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCCGAACAAAATCTTTG
*
26212577 AAGGGTTACAAAGTTGAGATGTGGATATCCACCAAGAACCAAACCAATAGCGGGCGTGGTTGACC
130 AAGGGTTACAAAGTCGAGATGTGGATATCCACCAAGAACCAAACCAATAGCGGGCGTGGTTGACC
26212642 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
195 AACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAG
26212707 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCAAGAGTACATGTA
260 ATCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCAAGAGTACATGTA
26212772 TTTAATAGATGGAAGAGAGAGGTTAGCACT
325 TTTAATAGATGGAAGAGAGAGGTTAGCACT
26212802 AACTAACTTG
Statistics
Matches: 349, Mismatches: 5, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
354 9 0.03
355 340 0.97
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (354 bp):
TATCTCCCCATGCACCAACCCACTAACAGTCCCAATCCAAATGCCTTAATCCATCTGCATAATTC
CTTTATTTTCATTTTTAAAGGGACAAAAATACATATAGCCTTATGATTCCGAACAAAATCTTTGA
AGGGTTACAAAGTCGAGATGTGGATATCCACCAAGAACCAAACCAATAGCGGGCGTGGTTGACCA
ACAGCCATTTTACGAAGCACTCAGCTTTCAACCCGTTTTGGATAAGAACTTGGTGGATGTCAAGA
TCATACCAGTAAATGAACGAAACTCATAATTCTTTCATACTTCATTAATGCAAGAGTACATGTAT
TTAATAGATGGAAGAGAGAGGTTAGCACT
Found at i:26220596 original size:14 final size:14
Alignment explanation
Indices: 26220577--26220605 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26220567 CTCTTGAGAT
26220577 TAATCTTTATCGAG
1 TAATCTTTATCGAG
26220591 TAATCTTTATCGAG
1 TAATCTTTATCGAG
26220605 T
1 T
26220606 CAAAGGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (14 bp):
TAATCTTTATCGAG
Found at i:26221887 original size:23 final size:24
Alignment explanation
Indices: 26221856--26221901 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
26221846 TTTAGAGAAT
*
26221856 TTTGTTTTTACG-TTTTGGGGTTC
1 TTTGCTTTTACGTTTTTGGGGTTC
**
26221879 TTTGCTTTTGGGTTTTTGGGGTT
1 TTTGCTTTTACGTTTTTGGGGTT
26221902 TAATTTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.02, C:0.07, G:0.30, T:0.61
Consensus pattern (24 bp):
TTTGCTTTTACGTTTTTGGGGTTC
Found at i:26225443 original size:9 final size:9
Alignment explanation
Indices: 26225426--26225499 Score: 66
Period size: 9 Copynumber: 8.6 Consensus size: 9
26225416 CATCTGGCAA
26225426 AAAAATTAT
1 AAAAATTAT
*
26225435 AAAAGTTAT
1 AAAAATTAT
*
26225444 AAAAATCAAT
1 AAAAAT-TAT
*
26225454 AAAAGTTAT
1 AAAAATTAT
26225463 AAAAATTAT
1 AAAAATTAT
*
26225472 -TAAATTA-
1 AAAAATTAT
26225479 AAAAA-T-T
1 AAAAATTAT
*
26225486 AAAAATTAG
1 AAAAATTAT
26225495 AAAAA
1 AAAAA
26225500 AATTTATAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
7 6 0.12
8 10 0.20
9 28 0.55
10 7 0.14
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:26225475 original size:19 final size:18
Alignment explanation
Indices: 26225426--26225499 Score: 84
Period size: 19 Copynumber: 4.3 Consensus size: 18
26225416 CATCTGGCAA
26225426 AAAAATTATAAAAGTTAT
1 AAAAATTATAAAAGTTAT
*
26225444 AAAAATCAATAAAAGTTAT
1 AAAAAT-TATAAAAGTTAT
*
26225463 AAAAATTATTAAA-TTA-
1 AAAAATTATAAAAGTTAT
*
26225479 AAAAATTA-AAAA-TTAG
1 AAAAATTATAAAAGTTAT
26225495 AAAAA
1 AAAAA
26225500 AATTTATAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.12
16 13 0.26
17 3 0.06
18 11 0.22
19 17 0.34
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (18 bp):
AAAAATTATAAAAGTTAT
Found at i:26225825 original size:18 final size:19
Alignment explanation
Indices: 26225787--26225835 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
26225777 CTATATTTCC
*
26225787 ATATATTTTATAATTTTTTT
1 ATAT-TTTTATAATTTTTTA
26225807 ATGATTTTTATAA-TTTTTA
1 AT-ATTTTTATAATTTTTTA
26225826 ATATTTTTAT
1 ATATTTTTAT
26225836 TAAAATTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 8 0.30
19 7 0.26
20 10 0.37
21 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
ATATTTTTATAATTTTTTA
Found at i:26225863 original size:19 final size:18
Alignment explanation
Indices: 26225787--26225863 Score: 55
Period size: 19 Copynumber: 4.0 Consensus size: 18
26225777 CTATATTTCC
* *
26225787 ATATATTTTATAATTTTTTT
1 ATAT-TTTTATAA-ATTTTA
*
26225807 ATGATTTTTATAATTTTTA
1 AT-ATTTTTATAAATTTTA
*
26225826 ATATTTTTATTAAAATTTA
1 ATATTTTTA-TAAATTTTA
* *
26225845 ATAATTTGTATAACTTTTA
1 AT-ATTTTTATAAATTTTA
26225864 TTTTTATCAT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
18 7 0.15
19 23 0.48
20 16 0.33
21 2 0.04
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (18 bp):
ATATTTTTATAAATTTTA
Found at i:26235052 original size:12 final size:13
Alignment explanation
Indices: 26235028--26235056 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26235018 GTAAGGAGAG
26235028 GAAAGAGAAGAAA
1 GAAAGAGAAGAAA
26235041 GAAAGA-AAGAAA
1 GAAAGAGAAGAAA
26235053 GAAA
1 GAAA
26235057 AGGTATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
GAAAGAGAAGAAA
Found at i:26235328 original size:91 final size:93
Alignment explanation
Indices: 26235233--26235403 Score: 258
Period size: 91 Copynumber: 1.9 Consensus size: 93
26235223 CTATTTTGTT
26235233 AGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTT-A-GTATT-TTGTGAGTTTTTATG
1 AGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGT-TTATTGTGAGTTTTTATG
*
26235295 AATGTAAATTTTTTTAAAGTCATTTTATC
65 AATGTAAAATTTTTTAAAGTCATTTTATC
* * * * *
26235324 AGTAATTTATGGTTAGGTTATAACTTGTTTGGGTTTTGTTTAATGTTTATTGTGATTTTTTATGA
1 AGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGTTTATTGTGAGTTTTTATGA
26235389 ATGTAAAATTTTTTA
66 ATGTAAAATTTTTTA
26235404 TTTTTTAAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
91 37 0.52
92 3 0.04
93 31 0.44
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.54
Consensus pattern (93 bp):
AGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAGTTTAATGTTTATTGTGAGTTTTTATGA
ATGTAAAATTTTTTAAAGTCATTTTATC
Found at i:26235425 original size:111 final size:107
Alignment explanation
Indices: 26235299--26235739 Score: 446
Period size: 111 Copynumber: 4.1 Consensus size: 107
26235289 TTTATGAATG
* * * * * * *
26235299 TAAATTTTTTTAAAGTCATTTTATCAGTAATTTATGGTTAGGTTATAACTTGTTTGGGTTTTGTT
1 TAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTTGTT
*
26235364 TAATGTTTATTGTGATTTTTTATGAATGTAAAATTTTTTATTTTT
66 TAGTGTTTATTGTGATTTTTTATGAATGT--AATTTTTT-TTTTT
* * * *
26235409 TAAAATTATTTGAAAGTTATTTTGTTAGCAATTTATGATTAGATTATAAATTGTTTGTGTTTTTT
1 T-AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTTGT
26235474 TTAGTGTTTATTGTGATTTTTTATGAATGTAA-----TTTTTT
65 TTAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTTTTT
* * * *
26235512 T-AATTATTTTAAAGTTATTTTTTTAGTAATTTATTATTAGGTTATAAATTATTTGTGTTTAGTT
1 TAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTTGTT
* * * **
26235576 TAGTGTTTATTGTGACTTGTTATAAATGTTTTTTTTGTGTTTTT
66 TAGTGTTTATTGTGATTTTTTATGAATGTAATTTTT-T-TTTTT
* * * * *
26235620 TAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTAATTTGTTTAG
1 TAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTT--TGTGTTTTG
* * * * *
26235685 TTTAATGTGTATCGTGATTTGTTAT-AATGTAGTTTTATTTGTTTT
64 TTTAGTGTTTATTGTGATTTTTTATGAATGTAATTTT-TTT-TTTT
* *
26235730 TGATTTATTT
1 TAAATTATTT
26235740 GACAATTTTT
Statistics
Matches: 282, Mismatches: 36, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
101 81 0.29
103 6 0.02
104 1 0.00
107 1 0.00
108 6 0.02
109 53 0.19
110 23 0.08
111 111 0.39
ACGTcount: A:0.26, C:0.01, G:0.14, T:0.59
Consensus pattern (107 bp):
TAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTTGTT
TAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTTTTT
Found at i:26235445 original size:202 final size:204
Alignment explanation
Indices: 26235142--26235670 Score: 667
Period size: 212 Copynumber: 2.6 Consensus size: 204
26235132 TTATTAATTA
26235142 TTATAAATTGTTTGTGTTTAGTTTAGTG-TT-TTGTGATTTTTTTATGAATGTAAATTTTTTGTT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGA-TTTTTTATGAATGTAAATTTTTTGTT
* * *
26235205 TTTTTAATTATTTTATAGCTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTA
65 TTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTA
*
26235270 GTTTAGT-ATT-TTGTGAGTTTTTATGAATGT-A-AATTTTTTTAAAGTCATTTTATCAGTAATT
130 GTTTAGTGATTATTGTGAGTTTTTATGAATGTAATAATTATTTTAAAGTCATTTTATCAGTAATT
*
26235331 TATGGTTAGG
195 TATGATTAGG
* * * * *
26235341 TTATAACTTGTTTGGGTTTTGTTTAATGTTTATTGTGATTTTTTATGAATGTAAAATTTTTTATT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGT-AAATTTTTTGTT
* * *
26235406 TTTTAAAATTATTTGAAAGTTATTTTGTTAGCAATTTATGATTAGATTATAAATTGTTTGTGTTT
65 TTTT-AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGGGTTT
** * * * * *
26235471 TTTTTAGTGTTTATTGTGATTTTTTATGAATGTAATTTTTTTAATTATTTTAAAGTTATTTTTTT
129 AGTTTAGTGATTATTGTGAGTTTTTATGAATGTAA------TAATTATTTTAAAGTCATTTTATC
*
26235536 AGTAATTTATTATTAGG
188 AGTAATTTATGATTAGG
* * * * **
26235553 TTATAAATTATTTGTGTTTAGTTTAGTGTTTATTGTGACTTGTTATAAATGT-TTTTTTTGTGTT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAAATTTTT-TGTT
*
26235617 TTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATT
65 TTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATT
26235671 ATTAATTTGT
Statistics
Matches: 280, Mismatches: 35, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
199 24 0.09
200 16 0.06
201 21 0.08
202 60 0.21
203 2 0.01
204 19 0.07
205 1 0.00
210 52 0.19
211 7 0.03
212 78 0.28
ACGTcount: A:0.26, C:0.01, G:0.15, T:0.58
Consensus pattern (204 bp):
TTATAAATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATGAATGTAAATTTTTTGTTT
TTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGATTATAAATTGTTTGGGTTTAG
TTTAGTGATTATTGTGAGTTTTTATGAATGTAATAATTATTTTAAAGTCATTTTATCAGTAATTT
ATGATTAGG
Found at i:26235517 original size:101 final size:102
Alignment explanation
Indices: 26235403--26235711 Score: 350
Period size: 101 Copynumber: 2.9 Consensus size: 102
26235393 AAAATTTTTT
* * * * *
26235403 ATTTTTTAAAATTATTTGAAAGTTATTTTGTTAGCAATTTATGATTAGATTATAAATTGTTTGTG
1 ATTTTTT-TAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTTGTG
** * * *
26235468 TTTTTTTTAGTGTTTATTGTGATTTTTTATGAATG-TA
65 TTTAGTTTAGTGTTTATTGTGACTTGTTATAAATGTTA
* *
26235505 ATTTTTTTAATTATTTTAAAGTTATTTTTTTAGTAATTTATTATTAGGTTATAAATTATTTGTGT
1 ATTTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTTGTGT
*
26235570 TTAGTTTAGTGTTTATTGTGACTTGTTATAAATGTTTTTTTT
66 TTAGTTTAGTGTTTATTGTGACTTGTTATAAATG-----TTA
*
26235612 GTGTTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTAAT
1 AT-TTTTTT-AATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATT--T
* * * * *
26235677 TTGTTTAGTTTAATGTGTATCGTGATTTGTTATAA
62 GTGTTTAGTTTAGTGTTTATTGTGACTTGTTATAA
26235712 TGTAGTTTTA
Statistics
Matches: 176, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
101 80 0.45
102 7 0.04
107 2 0.01
108 6 0.03
109 50 0.28
111 31 0.18
ACGTcount: A:0.28, C:0.01, G:0.13, T:0.58
Consensus pattern (102 bp):
ATTTTTTTAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTTGTGT
TTAGTTTAGTGTTTATTGTGACTTGTTATAAATGTTA
Found at i:26235619 original size:109 final size:110
Alignment explanation
Indices: 26235506--26235711 Score: 324
Period size: 109 Copynumber: 1.9 Consensus size: 110
26235496 ATGAATGTAA
* * *
26235506 TTTTTTTAATTATTTTAAAGTTATTTTTTTAGTAATTTATTATTAGGTTATAAATTATT-TGTGT
1 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTATGTGT
* * *
26235570 TTAGTTTAGTGTTTATTGTGACTTGTTATAAATGTTTTTTTTGTG
66 TTAGTTTAATGTGTATCGTGACTTGTTATAAATGTTTTTTTTGTG
*
26235615 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTAATTTG
1 TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATT-ATGTG
*
26235680 TTTAGTTTAATGTGTATCGTGATTTGTTATAA
65 TTTAGTTTAATGTGTATCGTGACTTGTTATAA
26235712 TGTAGTTTTA
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
109 56 0.64
111 31 0.36
ACGTcount: A:0.27, C:0.01, G:0.13, T:0.59
Consensus pattern (110 bp):
TTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATTATTAGATTATAAATTATTATGTGT
TTAGTTTAATGTGTATCGTGACTTGTTATAAATGTTTTTTTTGTG
Found at i:26236326 original size:3 final size:3
Alignment explanation
Indices: 26236318--26236412 Score: 52
Period size: 3 Copynumber: 31.0 Consensus size: 3
26236308 GTTATTAATC
* * * *
26236318 TAT TAT TAT AAT AAT TAT TAAT CTAT TAT TAT AAT AAT TAT TAAT TAT
1 TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT T-AT TAT
* * * *
26236366 TAT TA- TAGT TTT CTAT T-T AAA TAT TAT TAT TAA TAT TAT TA- TAT
1 TAT TAT TA-T TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26236410 TAT
1 TAT
26236413 GAAATAAAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
2 5 0.07
3 56 0.78
4 10 0.14
5 1 0.01
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:26236382 original size:23 final size:23
Alignment explanation
Indices: 26236309--26236372 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
26236299 TGAGGTTTTG
26236309 TTATTAATCTATTATTATAATAA
1 TTATTAATCTATTATTATAATAA
26236332 TTATTAATCTATTATTATAATAA
1 TTATTAATCTATTATTATAATAA
26236355 TTATTAAT-TATTATTATA
1 TTATTAATCTATTATTATA
26236373 GTTTTCTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 10 0.24
23 31 0.76
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (23 bp):
TTATTAATCTATTATTATAATAA
Found at i:26236409 original size:20 final size:21
Alignment explanation
Indices: 26236309--26236412 Score: 61
Period size: 23 Copynumber: 4.7 Consensus size: 21
26236299 TGAGGTTTTG
* *
26236309 TTATTAATCTATTATTATAATAA
1 TTATTATTATATTATTAT--TAA
* *
26236332 TTATTAATCTATTATTA-TAA
1 TTATTATTATATTATTATTAA
*
26236352 TAATTATTA-ATTATTATTATA
1 TTATTATTATATTATTATTA-A
*
26236373 GTTTTCTATTTAAATATTATTATTAA
1 -TTAT-TA-TT--ATATTATTATTAA
26236399 -TATTATTATATTAT
1 TTATTATTATATTAT
26236413 GAAATAAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 19
0.73 0.07 0.21
Matches are distributed among these distances:
19 7 0.10
20 18 0.27
21 1 0.01
22 4 0.06
23 21 0.31
24 4 0.06
26 2 0.03
27 10 0.15
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (21 bp):
TTATTATTATATTATTATTAA
Found at i:26236685 original size:3 final size:3
Alignment explanation
Indices: 26236671--26236744 Score: 68
Period size: 3 Copynumber: 26.0 Consensus size: 3
26236661 AAATAGATAT
* * *
26236671 TTA TTA TAA TTA TTA -TA CTT- TTA -TA TTA -AA TTA TTA -AA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
26236712 TGA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26236745 AAATAAATTA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
2 8 0.14
3 48 0.84
4 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:26236891 original size:16 final size:16
Alignment explanation
Indices: 26236870--26236908 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26236860 ATGAATTAAA
*
26236870 TATTATTATACTATAT
1 TATTATTATAATATAT
* *
26236886 TATTATCATAATGTAT
1 TATTATTATAATATAT
26236902 TATTATT
1 TATTATT
26236909 GATATTATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (16 bp):
TATTATTATAATATAT
Found at i:26237896 original size:21 final size:21
Alignment explanation
Indices: 26237870--26237929 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
26237860 GGCTTTGCGA
26237870 TCAGGCACTATATGTGTCGTAT
1 TCAGGCACTATATGTGTCGT-T
* *
26237892 T-AGGCACCACATGTGTCGTT
1 TCAGGCACTATATGTGTCGTT
*
26237912 TCAGGCACTTTATGTGTC
1 TCAGGCACTATATGTGTC
26237930 ACATATTGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (21 bp):
TCAGGCACTATATGTGTCGTT
Found at i:26238654 original size:15 final size:15
Alignment explanation
Indices: 26238634--26238663 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26238624 AATGAAGTTA
26238634 TTAGTCAATTTGAAT
1 TTAGTCAATTTGAAT
26238649 TTAGTCAATTTGAAT
1 TTAGTCAATTTGAAT
26238664 GATATCATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (15 bp):
TTAGTCAATTTGAAT
Found at i:26239104 original size:13 final size:13
Alignment explanation
Indices: 26239086--26239111 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26239076 GGACCCTTTA
26239086 GAAATTAATTATC
1 GAAATTAATTATC
26239099 GAAATTAATTATC
1 GAAATTAATTATC
26239112 TCAGTTTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
GAAATTAATTATC
Found at i:26244783 original size:108 final size:110
Alignment explanation
Indices: 26244651--26244850 Score: 271
Period size: 108 Copynumber: 1.8 Consensus size: 110
26244641 TTTATAATAG
* * * * *
26244651 TTACTAACAAAATAATTTTTAAATAAATTAAAAAATATTAAAACA-TTACATTTATAACCTAA-C
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAA-ATTTACATTCATAACCTAATA
* *
26244714 AAATTACAATAAACCCTAAA-CAAACAATTAACCTAATCACGAAAC
65 AAATCACAATAAACACTAAACCAAACAATTAACCTAATCACGAAAC
** *
26244759 TTACTAACAAAATAACTTTAAAATAAATTAAAAGTTAATAAAAATTTACATTCATAACTTAATAA
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAATTTACATTCATAACCTAATAA
*
26244824 AATCACAATAAACATTAAACCAAACAA
66 AATCACAATAAACACTAAACCAAACAA
26244851 ATAATTTATA
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 1 0.01
108 53 0.68
109 17 0.22
110 7 0.09
ACGTcount: A:0.56, C:0.15, G:0.01, T:0.28
Consensus pattern (110 bp):
TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAATTTACATTCATAACCTAATAA
AATCACAATAAACACTAAACCAAACAATTAACCTAATCACGAAAC
Found at i:26245021 original size:21 final size:22
Alignment explanation
Indices: 26244997--26245051 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
26244987 TACCTTATCC
*
26244997 TTCTTTTTTCT-CCTCCCTTCT
1 TTCTTTCTTCTCCCTCCCTTCT
*
26245018 TTCTTTCTTCTCCCTCTCTTCT
1 TTCTTTCTTCTCCCTCCCTTCT
*
26245040 TCCTTCTCTTCT
1 TTCTT-TCTTCT
26245052 GCTATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 10 0.34
22 13 0.45
23 6 0.21
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (22 bp):
TTCTTTCTTCTCCCTCCCTTCT
Found at i:26245030 original size:18 final size:18
Alignment explanation
Indices: 26244995--26245047 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
26244985 AATACCTTAT
*
26244995 CCTTCTTT-TTTCTCCTC
1 CCTTCTTTCTTTCTTCTC
26245012 CCTTCTTTCTTTCTTCTC
1 CCTTCTTTCTTTCTTCTC
*
26245030 CC-TCTCTTCTTCCTTCTC
1 CCTTCT-TTCTTTCTTCTC
26245048 TTCTGCTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 11 0.34
18 21 0.66
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (18 bp):
CCTTCTTTCTTTCTTCTC
Found at i:26249501 original size:14 final size:14
Alignment explanation
Indices: 26249482--26249508 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26249472 GTTGCGTTCG
26249482 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
26249496 TAGTTAAATTAGA
1 TAGTTAAATTAGA
26249509 CTAAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:26255906 original size:15 final size:15
Alignment explanation
Indices: 26255882--26255960 Score: 56
Period size: 15 Copynumber: 5.1 Consensus size: 15
26255872 AGCCACCCAT
26255882 TTTATT-TTATTTTA
1 TTTATTATTATTTTA
26255896 TTTATTATTATTTGT-
1 TTTATTATTATTT-TA
*
26255911 TATATTATTTATTTTTA
1 TTTATTA-TTA-TTTTA
* *
26255928 TTTTACTAAT-TTTTA
1 -TTTATTATTATTTTA
26255943 TTTATTTATTATTCTTA
1 TTTA-TTATTATT-TTA
26255960 T
1 T
26255961 ATTTAGATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 15
0.70 0.08 0.21
Matches are distributed among these distances:
14 10 0.20
15 20 0.40
16 7 0.14
17 8 0.16
18 5 0.10
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (15 bp):
TTTATTATTATTTTA
Found at i:26255918 original size:22 final size:22
Alignment explanation
Indices: 26255888--26255930 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26255878 CCATTTTATT
*
26255888 TTATTTTATTTATTATTATTTG
1 TTATATTATTTATTATTATTTG
*
26255910 TTATATTATTTATTTTTATTT
1 TTATATTATTTATTATTATTT
26255931 TACTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (22 bp):
TTATATTATTTATTATTATTTG
Found at i:26255970 original size:25 final size:25
Alignment explanation
Indices: 26255917--26255970 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
26255907 TTGTTATATT
**
26255917 ATTTATTTTTATTTTACTAATTTTT
1 ATTTATTTTTATTTTACTAATTTAG
26255942 ATTTATTTATTATTCTTA-T-ATTTAG
1 ATTTATTT-TTATT-TTACTAATTTAG
26255967 ATTT
1 ATTT
26255971 TAAATTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 16 0.64
26 6 0.24
27 3 0.12
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.69
Consensus pattern (25 bp):
ATTTATTTTTATTTTACTAATTTAG
Found at i:26256207 original size:21 final size:20
Alignment explanation
Indices: 26256163--26256236 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 20
26256153 CATGCCTCCC
*
26256163 ATTTTA-TTTTAT-TTATTT
1 ATTTTATTTTTATAATATTT
*
26256181 ATTTTTATTTGTTATATTATTT
1 A-TTTTATTT-TTATAATATTT
26256203 ATTTT-TATTTTACTAATATTT
1 ATTTTAT-TTTTA-TAATATTT
26256224 A-TTTATTTATTAT
1 ATTTTATTT-TTAT
26256237 TCTTATATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
18 1 0.02
19 5 0.11
20 12 0.26
21 22 0.47
22 7 0.15
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (20 bp):
ATTTTATTTTTATAATATTT
Found at i:26256237 original size:15 final size:15
Alignment explanation
Indices: 26256170--26256237 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 15
26256160 CCCATTTTAT
26256170 TTTATTTATTTATT-
1 TTTATTTATTTATTA
*
26256184 TTTATTTGTTATATTA
1 TTTATTTATT-TATTA
26256200 TTTATTTTTATTTTACTAATA
1 TTTA--TTTA-TTTA-T--TA
26256221 TTTATTTATTTATTA
1 TTTATTTATTTATTA
26256236 TT
1 TT
26256238 CTTATATTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
14 9 0.20
15 8 0.18
16 4 0.09
17 1 0.02
18 9 0.20
19 7 0.16
21 6 0.14
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (15 bp):
TTTATTTATTTATTA
Done.