Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 94 of 328
Found at i:26256371 original size:283 final size:283
Alignment explanation
Indices: 26255713--26256559 Score: 1420
Period size: 283 Copynumber: 3.0 Consensus size: 283
26255703 GGGAGAAGCG
* * *
26255713 AAGGAAAACACACA---CCTGGCACATGGTTGTGTGAAAACTAGGTTAACTTTTAATTTCACACG
1 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
* *
26255775 GGCTAAAAATGCTCCACACAGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
66 GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
*
26255840 TTCTCAATTTGTCTTTTTCTT-TTTCCCAACCAAGCCACCCATTTTATTTTATTTTATTTATTAT
131 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTA-TTTATTTATTAT
*
26255904 TATTTGTTATATTATTTATTTTTATTTTACTAATTTTTATTTATTTATTATTCTTATATTTAGAT
195 TATTTGTTATATTATTTATTTTTATTTTACTAATATTTATTTATTTATTATTCTTATATTTAGAT
26255969 TTTAAATTTCTTTTAA-TTTTTTT
260 TTTAAATTTCTTTTAATTTTTTTT
* *
26255992 AAGAAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACA
1 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
* * *
26256057 GGCTGAAAATGCTCCACATGGTCGGTTGTGTTACATGGCCATGTGGACCAAACCCTAGATTTCCT
66 GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
* * *
26256122 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCATGCCTCCCATTTTATTTTATTTATTTATTTTT
131 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTATTTATTATT
26256187 ATTTGTTATATTATTTATTTTTATTTTACTAATATTTATTTATTTATTATTCTTATATTTAGATT
196 ATTTGTTATATTATTTATTTTTATTTTACTAATATTTATTTATTTATTATTCTTATATTTAGATT
26256252 TTAAATTTCTTTTAATTTTTTTT
261 TTAAATTTCTTTTAATTTTTTTT
26256275 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
1 AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
* * *
26256340 GGCTGAAAATGCTCCACACGGTTGGTTGTGTTACACGACCATATGGCCCAAACCCTAGATTTCCT
66 GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
26256405 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTATTTATTATT
131 TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTATTTATTATT
*
26256470 ATTTGTTATATTATTTATTTTTATTTTACTAATATTTATTTATTTATTTATTATTCTTATACCTT
196 ATTTGTTATATTATTTATTTTTATTTTACT-A-A--TATTTATTTATTTATTATTCTTATA-TTT
26256535 -GATTTTAAATTTCTTTT-ATTTTTTT
256 AGATTTTAAATTTCTTTTAATTTTTTT
26256560 ACTATTTCTA
Statistics
Matches: 531, Mismatches: 27, Indels: 13
0.93 0.05 0.02
Matches are distributed among these distances:
279 13 0.02
282 216 0.41
283 248 0.47
284 1 0.00
285 1 0.00
286 8 0.02
287 42 0.08
288 2 0.00
ACGTcount: A:0.26, C:0.17, G:0.11, T:0.45
Consensus pattern (283 bp):
AAGGAAAACACACATGGCCTGACACATGGTCGTGTGAAAACTAGGTTAACTTTTAATTGCACACG
GGCTGAAAATGCTCCACACGGTCGGTTGTGTTACACGGCCATGTGGCCCAAACCCTAGATTTCCT
TTCTCAATTTGTCTTTTTCTTCTTCCCCAACCAAGCCACCCATTTTATTTTATTTATTTATTATT
ATTTGTTATATTATTTATTTTTATTTTACTAATATTTATTTATTTATTATTCTTATATTTAGATT
TTAAATTTCTTTTAATTTTTTTT
Found at i:26256462 original size:4 final size:4
Alignment explanation
Indices: 26256448--26256521 Score: 50
Period size: 4 Copynumber: 18.5 Consensus size: 4
26256438 AGCCACCCAT
*
26256448 TTTA TTTTA TTTA TTTA -TTA -TTA TTT- GTTA TATTA TTTA -TT- TTTA
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA
*
26256493 TTTTA CTAATA TTTA TTTA TTTA TTTA TT
1 -TTTA -T-TTA TTTA TTTA TTTA TTTA TT
26256522 ATTCTTATAC
Statistics
Matches: 57, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
3 12 0.21
4 29 0.51
5 14 0.25
6 2 0.04
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:26256473 original size:19 final size:19
Alignment explanation
Indices: 26256449--26256524 Score: 63
Period size: 22 Copynumber: 4.1 Consensus size: 19
26256439 GCCACCCATT
26256449 TTATTTTATTTATTTATTA
1 TTATTTTATTTATTTATTA
*
26256468 TTATTTGTTATATTATTTATTT
1 TTA-TT-TTAT-TTATTTATTA
* *
26256490 TTATTTTA-CTA-ATA-T-
1 TTATTTTATTTATTTATTA
26256505 TTA-TTTATTTATTTATTA
1 TTATTTTATTTATTTATTA
26256523 TT
1 TT
26256525 CTTATACCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 15
0.69 0.08 0.23
Matches are distributed among these distances:
14 4 0.09
15 5 0.11
16 3 0.07
17 3 0.07
18 4 0.09
19 3 0.07
20 5 0.11
21 6 0.13
22 12 0.27
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (19 bp):
TTATTTTATTTATTTATTA
Found at i:26256486 original size:22 final size:21
Alignment explanation
Indices: 26256454--26256495 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
26256444 CCATTTTATT
26256454 TTATTTATTTATTATTATTTG
1 TTATTTATTTATTATTATTTG
*
26256475 TTATATTATTTATTTTTATTT
1 TTAT-TTATTTATTATTATTT
26256496 TACTAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTATTTATTTATTATTATTTG
Found at i:26256523 original size:15 final size:15
Alignment explanation
Indices: 26256453--26256524 Score: 57
Period size: 15 Copynumber: 5.1 Consensus size: 15
26256443 CCCATTTTAT
26256453 TTTATTTATTTATTA
1 TTTATTTATTTATTA
*
26256468 -TTATTT-GTTA-TA
1 TTTATTTATTTATTA
26256480 -TTATTTATTT-TTA
1 TTTATTTATTTATTA
* * *
26256493 TTTTACTAATAT-TTA
1 -TTTATTTATTTATTA
26256508 TTTATTTATTTATTA
1 TTTATTTATTTATTA
26256523 TT
1 TT
26256525 CTTATACCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
12 8 0.18
13 7 0.16
14 14 0.32
15 15 0.34
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (15 bp):
TTTATTTATTTATTA
Found at i:26259447 original size:14 final size:14
Alignment explanation
Indices: 26259428--26259457 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26259418 GTTGCGTTCG
26259428 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
26259442 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
26259456 TA
1 TA
26259458 AAAACAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:26260688 original size:30 final size:30
Alignment explanation
Indices: 26260649--26260716 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
26260639 CATGGACTGG
* *
26260649 CACATGGGCGTGTGGCCAGCCCATGTGGCT
1 CACACGGGCGTGTGGCCAGCCCATGTCGCT
*
26260679 CACACGGGCGTGTGGCCAGCCCGTGTCGCT
1 CACACGGGCGTGTGGCCAGCCCATGTCGCT
26260709 CACACGGG
1 CACACGGG
26260717 TATGTGTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.13, C:0.34, G:0.37, T:0.16
Consensus pattern (30 bp):
CACACGGGCGTGTGGCCAGCCCATGTCGCT
Found at i:26260730 original size:30 final size:30
Alignment explanation
Indices: 26260649--26260732 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
26260639 CATGGACTGG
* * * *
26260649 CACATGGGCGTGTGGCCAGCCCATGTGGCT
1 CACACGGGCATGTGGCAAGCCCATGTCGCT
* * *
26260679 CACACGGGCGTGTGGCCAGCCCGTGTCGCT
1 CACACGGGCATGTGGCAAGCCCATGTCGCT
* *
26260709 CACACGGGTATGTGTCAAGCCCAT
1 CACACGGGCATGTGGCAAGCCCAT
26260733 ATGAAAGTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (30 bp):
CACACGGGCATGTGGCAAGCCCATGTCGCT
Found at i:26269610 original size:2 final size:2
Alignment explanation
Indices: 26269570--26269595 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26269560 TGTACATATA
26269570 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
26269596 AGTATTTGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:26273669 original size:48 final size:48
Alignment explanation
Indices: 26273608--26273709 Score: 168
Period size: 48 Copynumber: 2.1 Consensus size: 48
26273598 ACTTTTTGGC
* *
26273608 TTAACGTACAAGGATAAATTTATTTATTTTTTAATTAAAGAGGTACAA
1 TTAATGTACAAGGATAAATTTATTCATTTTTTAATTAAAGAGGTACAA
*
26273656 TTAATGTACAAGGATAAATTTATTCATTTTTTAATTAAAGGGGTACAA
1 TTAATGTACAAGGATAAATTTATTCATTTTTTAATTAAAGAGGTACAA
26273704 TATAAT
1 T-TAAT
26273710 TTGATTCTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
48 46 0.92
49 4 0.08
ACGTcount: A:0.41, C:0.06, G:0.13, T:0.40
Consensus pattern (48 bp):
TTAATGTACAAGGATAAATTTATTCATTTTTTAATTAAAGAGGTACAA
Found at i:26274088 original size:61 final size:61
Alignment explanation
Indices: 26273902--26274088 Score: 313
Period size: 61 Copynumber: 3.1 Consensus size: 61
26273892 AAATCAGTTG
*
26273902 AAAAGTTGATAAAAGAGAAAATAC-AAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGG
1 AAAAGTTGATAAAAGAGAAAA-ACAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
* *
26273963 AAAAGTTAATAAAAGAGAAAAGCAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
1 AAAAGTTGATAAAAGAGAAAAACAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
* *
26274024 AAAAGTTGATAAAAGAGAAAAACAAAATTCTTTTTGCTCTTAAGTAAATAATTATAAAGAA
1 AAAAGTTGATAAAAGAGAAAAACAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
26274085 AAAA
1 AAAA
26274089 AATAAAGAAA
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
60 1 0.01
61 117 0.99
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.28
Consensus pattern (61 bp):
AAAAGTTGATAAAAGAGAAAAACAAAATTCTTTTTGCTCTTAAGAAAATAATTATAAAGGA
Found at i:26274839 original size:18 final size:18
Alignment explanation
Indices: 26274816--26274858 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26274806 ATTTAAGGTG
26274816 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
26274834 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
26274852 TAATTAA
1 TAATTAA
26274859 AAATATATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:26278640 original size:13 final size:13
Alignment explanation
Indices: 26278622--26278648 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26278612 AGTTGAGTCT
26278622 TACAAAGCTAAAC
1 TACAAAGCTAAAC
26278635 TACAAAGCTAAAC
1 TACAAAGCTAAAC
26278648 T
1 T
26278649 CAATTAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.22, G:0.07, T:0.19
Consensus pattern (13 bp):
TACAAAGCTAAAC
Found at i:26281829 original size:46 final size:44
Alignment explanation
Indices: 26281777--26281862 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
26281767 AGAATAGAAA
*
26281777 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACAGGAT
*
26281823 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACA
26281863 AGAATAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 17 0.45
46 21 0.55
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAGGAT
Found at i:26281876 original size:44 final size:45
Alignment explanation
Indices: 26281779--26281903 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 45
26281769 AATAGAAATG
* * * *
26281779 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATA
*
26281825 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAAGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
** * * *
26281869 ATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
26281904 CAGGATATTG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.53
45 1 0.02
46 30 0.45
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
Found at i:26287299 original size:6 final size:6
Alignment explanation
Indices: 26287288--26287322 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
26287278 AATTTTCGAC
26287288 TCATCG TCATCG TCATCG TCATCG TCATCG TCATC
1 TCATCG TCATCG TCATCG TCATCG TCATCG TCATC
26287323 TTCTACCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.34, G:0.14, T:0.34
Consensus pattern (6 bp):
TCATCG
Found at i:26289504 original size:18 final size:17
Alignment explanation
Indices: 26289463--26289504 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
26289453 AATTATGATT
26289463 CAAAAATCAGCTAAATA
1 CAAAAATCAGCTAAATA
26289480 CATAAAAT-ATGCTGAAATA
1 CA-AAAATCA-GCT-AAATA
26289499 CAAAAA
1 CAAAAA
26289505 CATAATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.14
18 12 0.55
19 7 0.32
ACGTcount: A:0.60, C:0.14, G:0.07, T:0.19
Consensus pattern (17 bp):
CAAAAATCAGCTAAATA
Found at i:26293279 original size:22 final size:22
Alignment explanation
Indices: 26293253--26293298 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
26293243 TTTGAAAAAT
*
26293253 TTACATATCAACTTATCGTTTA
1 TTACATATCAACTTACCGTTTA
26293275 TTACATATCAACTTACCGTTTA
1 TTACATATCAACTTACCGTTTA
26293297 TT
1 TT
26293299 GAAGCTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (22 bp):
TTACATATCAACTTACCGTTTA
Found at i:26295528 original size:19 final size:19
Alignment explanation
Indices: 26295504--26295548 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26295494 CTTTTTGTTC
*
26295504 TTATTATTATTATTATTA-T
1 TTATTATTATTAGT-TTATT
*
26295523 TTATTAATATTAGTTTATT
1 TTATTATTATTAGTTTATT
26295542 TTATTAT
1 TTATTAT
26295549 GTTTGCTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTATTATTATTAGTTTATT
Found at i:26298021 original size:46 final size:46
Alignment explanation
Indices: 26297971--26298146 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
26297961 TGGTTGAGCA
26297971 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
26298017 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
26298062 CATCCGAACTCGTTGATTTGAGTCCGAGTTCACTCATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
26298110 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26298147 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 60 0.56
47 28 0.26
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:26298127 original size:93 final size:93
Alignment explanation
Indices: 26297968--26298139 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
26297958 GGATGGTTGA
* *
26297968 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
26298033 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
26298061 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
26298126 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26298140 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26299494 original size:5 final size:5
Alignment explanation
Indices: 26299484--26299537 Score: 72
Period size: 5 Copynumber: 10.0 Consensus size: 5
26299474 GAGTCCATTG
26299484 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTTT ATTTTT ATTTTT ATTGTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTTT A-TTTT A-TTTT ATT-TT
26299533 ATTTT
1 ATTTT
26299538 CGTAGACTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
5 25 0.53
6 22 0.47
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:26299516 original size:6 final size:6
Alignment explanation
Indices: 26299485--26299537 Score: 69
Period size: 6 Copynumber: 9.5 Consensus size: 6
26299475 AGTCCATTGA
26299485 TTTTA- TTTTA- TTTTA- TTTTA- TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
*
26299529 TGTTAT TTT
1 TTTTAT TTT
26299538 CGTAGACTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 20 0.44
6 25 0.56
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:26300978 original size:46 final size:46
Alignment explanation
Indices: 26300860--26300980 Score: 181
Period size: 46 Copynumber: 2.6 Consensus size: 46
26300850 TGTCATAGTG
* * *
26300860 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGCTGCCATGGTA
*
26300906 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCACGCTGCCATGGTA
*
26300952 TCTTTCAACCATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACTCATTTCAT
26300981 ATCAGAGAGC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 4 0.06
46 64 0.94
ACGTcount: A:0.20, C:0.25, G:0.13, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATGTCACGCTGCCATGGTA
Found at i:26304533 original size:46 final size:48
Alignment explanation
Indices: 26304389--26304751 Score: 224
Period size: 46 Copynumber: 7.7 Consensus size: 48
26304379 TTTGTGTGCT
* * *
26304389 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCAC-ATTACG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGA-GATGTA-AGCC
* * * * * * * *
26304435 AGTGTAAGACCATGTTTGAGACATGGCATCGACATTGAGA--CAAGAACT
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGAGATGTAAG--CC
26304483 AGTGTAAGA-CATGTCTGGGACAT-ACATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGAGATGTAAGCC
**
26304529 AGTGTAAGA-CATGTCTGGGACAT-ACATCGG-CTACGAGATGT--GTT
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCT-CGAGATGTAAGCC
* * * *
26304573 AGTGTAAGACCATGTTTGGGACATGGCATCGG--TACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCT-C-GAGATGT-A-AGCC
* * * * ** *
26304623 TGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATTTCG-ATAGTC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGAGAT-GTA-AGCC
* * *
26304672 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATG--AGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGA--GATGTAAGCC
*
26304719 AGTGAAAGACCATGTCTGGGACATGACATCGGC
1 AGTGTAAGACCATGTCTGGGACATGACATCGGC
26304752 ATTATACCCT
Statistics
Matches: 257, Mismatches: 38, Indels: 42
0.76 0.11 0.12
Matches are distributed among these distances:
44 10 0.04
45 18 0.07
46 73 0.28
47 57 0.22
48 26 0.10
49 33 0.13
50 37 0.14
51 2 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGAGATGTAAGCC
Found at i:26304628 original size:140 final size:140
Alignment explanation
Indices: 26304389--26304695 Score: 322
Period size: 140 Copynumber: 2.2 Consensus size: 140
26304379 TTTGTGTGCT
* *
26304389 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAGAGCCAGTGTAAGACCATGTTTGA
1 AGTGTAAGACATGTCTGGGACATACATCGGCCACA-GACGAGAGCCAGTGTAAGACCATGTTTGA
*
26304454 GACATGGCATCGACATTGAGACAAGAACTAGTGTAAGA-CATGTCTGGGACAT-ACATCGGCCTC
65 GACATGGCATCGACATTGAG--AAGAACTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTC
26304517 GAGAT-G-TAAGCC
128 GAGATCGAT-AGCC
* * ** *
26304529 AGTGTAAGACATGTCTGGGACATACATCGGCTAC-GA-GATGTGTTAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATACATCGGCCACAGACGA-GAGCCAGTGTAAGACCATGTTTGA
* * * * *
26304592 GACATGGCATCGGTACAGATATGTG-AGAGCTTGTGTAAGACCATGTTTGGGACATGGCATCAGC
65 GACATGGCATC-G-AC--AT-TGAGAAGAACTAGTGTAAGACCATGTCTGGGACATGACATCAGC
** *
26304656 CTCGATTTCGATAGTC
125 CTCGAGATCGATAGCC
26304672 AGTGTAAGACCATGTCTGGGACAT
1 AGTGTAAGA-CATGTCTGGGACAT
26304696 GGCATCGACT
Statistics
Matches: 140, Mismatches: 16, Indels: 18
0.80 0.09 0.10
Matches are distributed among these distances:
137 2 0.01
138 32 0.23
139 1 0.01
140 47 0.34
141 13 0.09
142 14 0.10
143 16 0.11
144 15 0.11
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATACATCGGCCACAGACGAGAGCCAGTGTAAGACCATGTTTGAG
ACATGGCATCGACATTGAGAAGAACTAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCGAG
ATCGATAGCC
Found at i:26306288 original size:21 final size:20
Alignment explanation
Indices: 26306248--26306288 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26306238 ATTCTTCTTT
* *
26306248 TCAATATTTTGGGGATTTCA
1 TCAATATTTAGGGAATTTCA
26306268 TCAATATTTAGGGCAATTTCA
1 TCAATATTTAGGG-AATTTCA
26306289 AATCTCTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.41
Consensus pattern (20 bp):
TCAATATTTAGGGAATTTCA
Found at i:26313435 original size:2 final size:2
Alignment explanation
Indices: 26313428--26313473 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
26313418 TTCATATGTC
26313428 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26313470 AT AT
1 AT AT
26313474 CCATTTTTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26316423 original size:14 final size:14
Alignment explanation
Indices: 26316404--26316439 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
26316394 TTGGGGCATT
*
26316404 TGCATACATACGTC
1 TGCATACATACATC
26316418 TGCATACATACATC
1 TGCATACATACATC
26316432 TGCATACA
1 TGCATACA
26316440 AAGCTTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (14 bp):
TGCATACATACATC
Found at i:26317066 original size:25 final size:24
Alignment explanation
Indices: 26317038--26317119 Score: 58
Period size: 25 Copynumber: 3.2 Consensus size: 24
26317028 GTGATTCTGC
26317038 GACTGCAGTATCTGATTGACTATTT
1 GACTG-AGTATCTGATTGACTATTT
* * * *
26317063 GACTAAAATATTTGATTGTCTGA-TT
1 GACT-GAGTATCTGATTGACT-ATTT
* *
26317088 GACTGAGAAGTCTGATTGTATTATTT
1 GACTGAGTA-TCTGATTG-ACTATTT
26317114 GACTGA
1 GACTGA
26317120 AAGACACTTG
Statistics
Matches: 42, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
24 2 0.05
25 30 0.71
26 10 0.24
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (24 bp):
GACTGAGTATCTGATTGACTATTT
Found at i:26319751 original size:24 final size:24
Alignment explanation
Indices: 26319724--26319772 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
26319714 CAACGCGCAT
26319724 TCTATTATAGCACTTTAGTGCAAC
1 TCTATTATAGCACTTTAGTGCAAC
* * *
26319748 TCTATTATGGCATTTTGGTGCAAC
1 TCTATTATAGCACTTTAGTGCAAC
26319772 T
1 T
26319773 TTGTTAAGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.41
Consensus pattern (24 bp):
TCTATTATAGCACTTTAGTGCAAC
Found at i:26325949 original size:13 final size:13
Alignment explanation
Indices: 26325933--26325959 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26325923 AAGTATTGGA
26325933 CATCTGTTATTGC
1 CATCTGTTATTGC
26325946 CATCTGTTATTGC
1 CATCTGTTATTGC
26325959 C
1 C
26325960 TTAGCTCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.44
Consensus pattern (13 bp):
CATCTGTTATTGC
Found at i:26325996 original size:24 final size:24
Alignment explanation
Indices: 26325969--26326016 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
26325959 CTTAGCTCGG
*
26325969 TCTTTTTCCTTGTGCCAGTTATTA
1 TCTTTCTCCTTGTGCCAGTTATTA
26325993 TCTTTCTCCTTGTGCCAGTTATTA
1 TCTTTCTCCTTGTGCCAGTTATTA
26326017 CTCATCTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.23, G:0.12, T:0.52
Consensus pattern (24 bp):
TCTTTCTCCTTGTGCCAGTTATTA
Found at i:26326024 original size:24 final size:24
Alignment explanation
Indices: 26325975--26326024 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
26325965 TCGGTCTTTT
*
26325975 TCCTTGTGCCAGTTATTATCTTTC
1 TCCTTGTGCCAGTTATTATCTATC
26325999 TCCTTGTGCCAGTTATTA-CTCATC
1 TCCTTGTGCCAGTTATTATCT-ATC
26326023 TC
1 TC
26326025 ATGTCATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.14, C:0.28, G:0.12, T:0.46
Consensus pattern (24 bp):
TCCTTGTGCCAGTTATTATCTATC
Found at i:26340148 original size:16 final size:16
Alignment explanation
Indices: 26340127--26340157 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26340117 GGCAAATGTT
*
26340127 AAGTATTTATAATAAA
1 AAGTATATATAATAAA
26340143 AAGTATATATAATAA
1 AAGTATATATAATAA
26340158 TAACTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (16 bp):
AAGTATATATAATAAA
Found at i:26342662 original size:28 final size:30
Alignment explanation
Indices: 26342626--26342749 Score: 86
Period size: 28 Copynumber: 4.4 Consensus size: 30
26342616 TAAGTACTCA
26342626 CCACAAAGGCTT-TCC-TTACAGAGTTTCG
1 CCACAAAGGCTTGTCCTTTACAGAGTTTCG
* *
26342654 CCACAAAGGC--ATCCTTTA-AGAGGTTCG
1 CCACAAAGGCTTGTCCTTTACAGAGTTTCG
** * * * **
26342681 CCATGAAGGCTTG-CCCTTCCAAAGTTTTA
1 CCACAAAGGCTTGTCCTTTACAGAGTTTCG
*
26342710 CCATAAAGG-TTGTCCTTTAACA-AG-TTCG
1 CCACAAAGGCTTGTCCTTT-ACAGAGTTTCG
26342738 CCACAAAGGCTT
1 CCACAAAGGCTT
26342750 ACTTTTCAAA
Statistics
Matches: 72, Mismatches: 16, Indels: 15
0.70 0.16 0.15
Matches are distributed among these distances:
27 19 0.26
28 30 0.42
29 21 0.29
30 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (30 bp):
CCACAAAGGCTTGTCCTTTACAGAGTTTCG
Found at i:26342680 original size:27 final size:28
Alignment explanation
Indices: 26342626--26342683 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
26342616 TAAGTACTCA
* *
26342626 CCACAAAGGCTTTCCTTACAGAGTTTCG
1 CCACAAAGGCTATCCTTACAGAGGTTCG
26342654 CCACAAAGGC-ATCCTTTA-AGAGGTTCG
1 CCACAAAGGCTATCC-TTACAGAGGTTCG
26342681 CCA
1 CCA
26342684 TGAAGGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (28 bp):
CCACAAAGGCTATCCTTACAGAGGTTCG
Found at i:26349639 original size:2 final size:2
Alignment explanation
Indices: 26349632--26349661 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26349622 GCACTAACTG
26349632 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26349662 CTGTGTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26349668 original size:2 final size:2
Alignment explanation
Indices: 26349663--26349718 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
26349653 TATATATATC
*
26349663 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
26349705 TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG
26349719 CTCTGATAGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.02, C:0.00, G:0.48, T:0.50
Consensus pattern (2 bp):
TG
Found at i:26357264 original size:20 final size:18
Alignment explanation
Indices: 26357239--26357279 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
26357229 TTTTTTTAAT
*
26357239 AAATTTGTAAAACATTATTA
1 AAATTTATAAAA-A-TATTA
26357259 AAATTTATAAAAATATTA
1 AAATTTATAAAAATATTA
26357277 AAA
1 AAA
26357280 AATTTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 1 0.05
20 11 0.55
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAATTTATAAAAATATTA
Found at i:26358754 original size:40 final size:41
Alignment explanation
Indices: 26358678--26358760 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
26358668 ATACCTACAA
*
26358678 AATGCAATCCTCACCATCCAAAAAAGCAAACTTATAATTAC
1 AATGCAATCCTCACCATCCAAAAAAGCAAACTTATAATAAC
26358719 AATGCAATCCTCACCATCCAAAAAAGCAAAC-TATAATAAC
1 AATGCAATCCTCACCATCCAAAAAAGCAAACTTATAATAAC
26358759 AA
1 AA
26358761 GTAGCAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 10 0.24
41 31 0.76
ACGTcount: A:0.49, C:0.27, G:0.05, T:0.19
Consensus pattern (41 bp):
AATGCAATCCTCACCATCCAAAAAAGCAAACTTATAATAAC
Found at i:26360918 original size:35 final size:35
Alignment explanation
Indices: 26360879--26360948 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
26360869 ATTGTCATTA
26360879 TTGAGTTGCAAATAATTCAAATTTTGCTATTCACT
1 TTGAGTTGCAAATAATTCAAATTTTGCTATTCACT
26360914 TTGAGTTGCAAATAATTCAAATTTTGCTATTCACT
1 TTGAGTTGCAAATAATTCAAATTTTGCTATTCACT
26360949 AACTAAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (35 bp):
TTGAGTTGCAAATAATTCAAATTTTGCTATTCACT
Found at i:26362183 original size:21 final size:22
Alignment explanation
Indices: 26362159--26362213 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
26362149 GTACATGGCC
*
26362159 GTGTGATTGAG-GCACACG-CTT
1 GTGTGATTGAGAG-ACACGCCCT
*
26362180 GTGTGACTGAGAGACACGCCCT
1 GTGTGATTGAGAGACACGCCCT
26362202 -TGTGATTGAGAG
1 GTGTGATTGAGAG
26362214 GCATGGCCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 26 0.90
22 3 0.10
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (22 bp):
GTGTGATTGAGAGACACGCCCT
Found at i:26362590 original size:34 final size:34
Alignment explanation
Indices: 26362547--26362615 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
26362537 AATATTTGAG
*
26362547 AAAATGGGTCAAACCACATTTGACTTATTTTTTT
1 AAAAGGGGTCAAACCACATTTGACTTATTTTTTT
26362581 AAAAGGGGTCAAACCACATTTGACTTATTTTTTT
1 AAAAGGGGTCAAACCACATTTGACTTATTTTTTT
26362615 A
1 A
26362616 CTCTTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (34 bp):
AAAAGGGGTCAAACCACATTTGACTTATTTTTTT
Found at i:26364239 original size:29 final size:27
Alignment explanation
Indices: 26364172--26364243 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
26364162 TTATGGCTTT
*
26364172 TTTTTTATAAAAATTATATTAAAATAA
1 TTTTTTATAAAAATAATATTAAAATAA
** * **
26364199 TTAATTACAAAAATAATATTGAATCTAAA
1 TTTTTTATAAAAATAATATT-AAAAT-AA
26364228 TTTTTTATAAAAATAA
1 TTTTTTATAAAAATAA
26364244 AAATTTTTAT
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 16 0.47
28 3 0.09
29 15 0.44
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (27 bp):
TTTTTTATAAAAATAATATTAAAATAA
Found at i:26371214 original size:131 final size:130
Alignment explanation
Indices: 26370965--26371307 Score: 370
Period size: 131 Copynumber: 2.7 Consensus size: 130
26370955 CAAATGTTTG
* * * * * *
26370965 TTTAAGAATTCTTTAAAACGAAGGCAATACTCGGTGTTTGGCAATTC-GAGAATCGTGCCCTATC
1 TTTAAAAATTCTTAAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATT
* * * * * * * *
26371029 GTGTTGGGTTGCGATTTCCCATTTGTTCAAAACAATCGACTATTCCTCTGGAATTTCACTCATGT
66 GTGCTGGGTTGCAATTTTCTATTTATTCAAAACAATCGAATATCCCTCTAGAATTTCACTCATGT
* * * * *
26371094 CTTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAACTCGGGGAATAGTGCCCTAT
1 -TTTAAAAATTCTTAAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
* * *
26371159 TGTGCTGGGTTGCAATTTTCTGTTTATTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATG
65 TGTGCTGGGTTGCAATTTTCTATTTATTCAAAACAATCGAATATCCCTCTAGAATTTCACTCATG
26371224 T
130 T
* * * * * *
26371225 TCTT-AAAATTC-TAAAAATG-AGGCAACGCTCGATGTTTAGAAATTCGAGGAATCGTGCCCTAC
1 T-TTAAAAATTCTTAAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
* *
26371287 TGTGCTGGGTTTCAGTTTTCT
65 TGTGCTGGGTTGCAATTTTCT
26371308 CGTTGGACTA
Statistics
Matches: 177, Mismatches: 34, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
128 53 0.30
129 6 0.03
130 48 0.27
131 70 0.40
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (130 bp):
TTTAAAAATTCTTAAAAACGAAGGCAATGCTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATT
GTGCTGGGTTGCAATTTTCTATTTATTCAAAACAATCGAATATCCCTCTAGAATTTCACTCATGT
Found at i:26375293 original size:7 final size:7
Alignment explanation
Indices: 26375281--26375314 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
26375271 TCCTAAATTC
26375281 TCAATCT
1 TCAATCT
26375288 TCAATCT
1 TCAATCT
26375295 TCAATCT
1 TCAATCT
*
26375302 TCAATCC
1 TCAATCT
26375309 TCAATC
1 TCAATC
26375315 CCATTTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.38
Consensus pattern (7 bp):
TCAATCT
Found at i:26375329 original size:7 final size:7
Alignment explanation
Indices: 26375319--26375378 Score: 70
Period size: 7 Copynumber: 8.6 Consensus size: 7
26375309 TCAATCCCAT
26375319 TTTTCAA
1 TTTTCAA
26375326 TTTT-ATA
1 TTTTCA-A
26375333 TTTTCAA
1 TTTTCAA
*
26375340 TCTTCAAA
1 TTTTC-AA
26375348 TTTT-AA
1 TTTTCAA
26375354 TTTTCAA
1 TTTTCAA
26375361 TTTTCAA
1 TTTTCAA
*
26375368 TTTTTAA
1 TTTTCAA
26375375 TTTT
1 TTTT
26375379 TAATCCTCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
6 7 0.15
7 33 0.72
8 6 0.13
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (7 bp):
TTTTCAA
Found at i:26375389 original size:21 final size:21
Alignment explanation
Indices: 26375321--26375390 Score: 88
Period size: 21 Copynumber: 3.3 Consensus size: 21
26375311 AATCCCATTT
26375321 TTCAA-TTTTATATTTTCAATC
1 TTCAATTTTTA-ATTTTCAATC
* *
26375342 TTCAAATTTTAATTTTCAATT
1 TTCAATTTTTAATTTTCAATC
*
26375363 TTCAATTTTTAATTTTTAATC
1 TTCAATTTTTAATTTTCAATC
*
26375384 CTCAATT
1 TTCAATT
26375391 ATTTTTTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
21 38 0.88
22 5 0.12
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (21 bp):
TTCAATTTTTAATTTTCAATC
Found at i:26375390 original size:14 final size:14
Alignment explanation
Indices: 26375276--26375390 Score: 83
Period size: 14 Copynumber: 8.3 Consensus size: 14
26375266 TTCCTTCCTA
*
26375276 AATTCTCAATCTTC
1 AATTTTCAATCTTC
*
26375290 AATCTTCAATCTTC
1 AATTTTCAATCTTC
** *
26375304 AATCCTCAATC-CC
1 AATTTTCAATCTTC
* *
26375317 ATTTTTCAAT-TTT
1 AATTTTCAATCTTC
26375330 ATATTTTCAATCTTC
1 A-ATTTTCAATCTTC
*
26375345 AAATTTT-AATTTTC
1 -AATTTTCAATCTTC
* *
26375359 AATTTTCAATTTTT
1 AATTTTCAATCTTC
* *
26375373 AATTTTTAATCCTC
1 AATTTTCAATCTTC
26375387 AATT
1 AATT
26375391 ATTTTTTAAT
Statistics
Matches: 79, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
13 15 0.19
14 56 0.71
15 7 0.09
16 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTTTCAATCTTC
Found at i:26377420 original size:2 final size:2
Alignment explanation
Indices: 26377415--26377442 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26377405 GCAAAAAATG
26377415 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26377443 ACAAAAGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26378384 original size:3 final size:3
Alignment explanation
Indices: 26378376--26378507 Score: 63
Period size: 3 Copynumber: 42.3 Consensus size: 3
26378366 AATTAATTTG
* * * *
26378376 TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TTT TCTA TGA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * *
26378422 TTT TTA TTGA TATA TTA TTA CTA TTC TTC TTAA TGTG TTA TTA TTA TTTA
1 TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA -TTA
* * *
26378472 TT- TTCCA CT- TTA TTA TTA TT- GTA TTA TTA CTA TTA T
1 TTA TT--A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26378508 GATCACCATG
Statistics
Matches: 97, Mismatches: 21, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
2 4 0.04
3 79 0.81
4 11 0.11
5 3 0.03
ACGTcount: A:0.27, C:0.06, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:26378593 original size:3 final size:3
Alignment explanation
Indices: 26378585--26378628 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
26378575 TTTACTTAAG
26378585 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TCTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TT
26378629 TTCGTTGTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 1 0.03
3 37 0.95
4 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26378658 original size:15 final size:15
Alignment explanation
Indices: 26378589--26378659 Score: 60
Period size: 15 Copynumber: 4.9 Consensus size: 15
26378579 CTTAAGTTAT
26378589 TATTATTATTATTAT-
1 TATTATTATTATT-TG
*
26378604 TATTATTATTATTTC
1 TATTATTATTATTTG
*
26378619 TATTATTATT-TTCG
1 TATTATTATTATTTG
* **
26378633 --TTGTTGGTATTTG
1 TATTATTATTATTTG
26378646 TATTATTATTATTT
1 TATTATTATTATTT
26378660 TCACCATTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
12 5 0.12
13 3 0.07
14 3 0.07
15 32 0.74
ACGTcount: A:0.24, C:0.03, G:0.07, T:0.66
Consensus pattern (15 bp):
TATTATTATTATTTG
Found at i:26380821 original size:12 final size:12
Alignment explanation
Indices: 26380806--26380851 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
26380796 ATGCAGAAGG
26380806 ATATGCAAGAAC
1 ATATGCAAGAAC
26380818 ATATGCAAGAAC
1 ATATGCAAGAAC
26380830 ATATGCAA-ACAC
1 ATATGCAAGA-AC
*
26380842 AAATGCAAGA
1 ATATGCAAGA
26380852 GCAATTGGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
11 1 0.03
12 29 0.94
13 1 0.03
ACGTcount: A:0.52, C:0.17, G:0.15, T:0.15
Consensus pattern (12 bp):
ATATGCAAGAAC
Found at i:26380823 original size:24 final size:24
Alignment explanation
Indices: 26380790--26380851 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
26380780 AGAAAGGTTG
*
26380790 GAACAAATGC-AGAAGGATATGCAA
1 GAACAAATGCAAGAA-CATATGCAA
*
26380814 GAACATATGCAAGAACATATGCAA
1 GAACAAATGCAAGAACATATGCAA
26380838 -ACACAAATGCAAGA
1 GA-ACAAATGCAAGA
26380852 GCAATTGGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 1 0.03
24 28 0.85
25 4 0.12
ACGTcount: A:0.52, C:0.16, G:0.19, T:0.13
Consensus pattern (24 bp):
GAACAAATGCAAGAACATATGCAA
Found at i:26383618 original size:18 final size:18
Alignment explanation
Indices: 26383595--26383629 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26383585 AGAGGTAGCC
*
26383595 AAAAAAAATAAAAACAAG
1 AAAAAAAACAAAAACAAG
26383613 AAAAAAAACAAAAACAA
1 AAAAAAAACAAAAACAA
26383630 AATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.86, C:0.09, G:0.03, T:0.03
Consensus pattern (18 bp):
AAAAAAAACAAAAACAAG
Found at i:26385291 original size:45 final size:44
Alignment explanation
Indices: 26385192--26385715 Score: 420
Period size: 45 Copynumber: 11.7 Consensus size: 44
26385182 TATAATAGTG
** * * * * ** *
26385192 AATCTTATCTCTTTGAAGTTGCAGTGAAGTAGATTGAGGCCACC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * * *
26385236 AGTCTTATCTCTCTGAAGTTGTAGTGGAGCAGACTAAAGATAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
** * *
26385280 AGATCTTATCTCCCTGAAGTTGCAGTGGAATAGA-TCAAAAATAGC
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGC
* * * * ** *
26385325 AAACCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAG-TAGT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
26385369 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* ** *
26385414 AGATCTTATCTCCCTGAAGTTGCAGCGGAATAGA-TCGAAGATAGAA
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAG-C
* * * *
26385460 AACCTTATCTCTCTGAAGTTGCAGTAGAGCATG-TTGAAG-TAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGATAGC
* * *
26385503 AAGTCCTATCTCCCTGAAGTTGTAGTGGAGAAGACTGAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
*
26385548 AAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * * *
26385593 AGATCTTATCTCCCTAAAGTTACAGTGGAGCAGA-TCGAA-ACCA-T
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGA-TAGC
* * * *
26385637 AATCATTATCTCTCTGAAGTTGCAGTAGAGCAGGA-TAAAAATA-C
1 AATC-TTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGATAGC
26385681 AAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 ---AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
26385716 GTTGAAATTA
Statistics
Matches: 391, Mismatches: 66, Indels: 45
0.78 0.13 0.09
Matches are distributed among these distances:
43 8 0.02
44 130 0.33
45 217 0.55
46 32 0.08
47 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
Found at i:26385314 original size:89 final size:89
Alignment explanation
Indices: 26385192--26385712 Score: 368
Period size: 89 Copynumber: 5.8 Consensus size: 89
26385182 TATAATAGTG
** * ** * *
26385192 AATCTTATCTCTTTGAAGTTGCAGT-GAAGTAGATTGAGGCCA-CCAGTCTTATCTCTCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAA-TAGATTGAAGATAGCAAGTCTTATCTCCCTGAAGT
* * *
26385255 TGTAGTGGAGCAGACTAAAGATAGC
65 TGCAGTGGAGTAGACTGAAGATAGC
** * ** *
26385280 AGATCTTATCTCCCTGAAGTTGCAGTGGAATAGATCAAAAATAGCAAACCTTATCTCTCTGAAGT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGATAGCAAGTCTTATCTCCCTGAAGT
* ** *
26385345 TGCAGTAGAGTAGGTTGAAG-TAGT
65 TGCAGTGGAGTAGACTGAAGATAGC
** *
26385369 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC-AGATCTTATCTCCCTGAAG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGATAGCAAG-TCTTATCTCCCTGAAG
* * *
26385433 TTGCAGCGGAATAGA-TCGAAGATAGAA
64 TTGCAGTGGAGTAGACT-GAAGATAG-C
* * * *
26385460 AACCTTATCTCTCTGAAGTTGCAGTAGAGCAT-G-TTGAAG-TAGCAAGTCCTATCTCCCTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGT-G-GAATAGATTGAAGATAGCAAGTCTTATCTCCCTGAAG
* *
26385522 TTGTAGTGGAGAAGACTGAAGATAGC
64 TTGCAGTGGAGTAGACTGAAGATAGC
* ** * *
26385548 AAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGC-AGATCTTATCTCCCTAAAG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGATAGCAAG-TCTTATCTCCCTGAAG
* * * *
26385612 TTACAGTGGAGCAGA-TCGAA-ACCA-T
64 TTGCAGTGGAGTAGACT-GAAGA-TAGC
* * ** * * *
26385637 AATCATTATCTCTCTGAAGTTGCAGTAGAGCAGGA-TAAAAATA-CAAAAATCTTATCTCCCTGA
1 AATC-TTATCTCCCTGAAGTTGCAGTGGAATA-GATTGAAGATAGC--AAGTCTTATCTCCCTGA
26385700 AGTTGCAGTGGAG
62 AGTTGCAGTGGAG
26385713 CAGGTTGAAA
Statistics
Matches: 343, Mismatches: 66, Indels: 46
0.75 0.15 0.10
Matches are distributed among these distances:
87 1 0.00
88 11 0.03
89 197 0.57
90 128 0.37
91 5 0.01
92 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (89 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGATAGCAAGTCTTATCTCCCTGAAGTT
GCAGTGGAGTAGACTGAAGATAGC
Found at i:26385425 original size:134 final size:134
Alignment explanation
Indices: 26385236--26385711 Score: 568
Period size: 134 Copynumber: 3.5 Consensus size: 134
26385226 TGAGGCCACC
* *
26385236 AGTCTTATCTCTCTGAAGTTGTAGTGGAGCAGACTAAAGATAGCAGATCTTATCTCCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTATCTCCCTGAAGTT
* * *
26385301 GCAGTGGAATAGATCAAAAATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAGT
66 GCAGTGGAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGT
26385366 AGTA
131 AGTA
*
26385370 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTATCTCCCTGAAGTT
* * *
26385435 GCAGCGGAATAGATCGAAGATAGAAAACCTTATCTCTCTGAAGTTGCAGTAGAGCATGTTGAAGT
66 GCAGTGGAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGT
*
26385500 AGCA
131 AGTA
* * * *
26385504 AGTCCTATCTCCCTGAAGTTGTAGTGGAGAAGACTGAAGATAGCA-AGTCTTATCTCCCTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGA-TCTTATCTCCCTGAAGT
* ** * * * * * * * *
26385568 TGTAGTGGAGCAGA-CTGAAGATAGCAGATCTTATCTCCCTAAAGTTACAGTGGAGCAGATCGAA
65 TGCAGTGGAATAGATC-GAAGATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTG-A
**
26385632 ACCA-TA
128 AGTAGTA
* * * *
26385638 A-TCATTATCTCTCTGAAGTTGCAGTAGAGCAGGA-TAAAAATA-CAAAAATCTTATCTCCCTGA
1 AGTC-TTATCTCCCTGAAGTTGCAGTGGAGCA-GACTAAAGATAGC--AGATCTTATCTCCCTGA
26385700 AGTTGCAGTGGA
62 AGTTGCAGTGGA
26385712 GCAGGTTGAA
Statistics
Matches: 296, Mismatches: 38, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
133 5 0.02
134 259 0.88
135 31 0.10
136 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (134 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAGATCTTATCTCCCTGAAGTT
GCAGTGGAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGT
AGTA
Found at i:26387249 original size:3 final size:3
Alignment explanation
Indices: 26387241--26387423 Score: 176
Period size: 3 Copynumber: 60.3 Consensus size: 3
26387231 ATTAATTTGT
26387241 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
26387289 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TCTA TGA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * * *
26387335 TTT TTA TTA ATA -TA TTA TTA CTA TTC TTC TTAA TGTG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA
* * *
26387381 TTTA TT- TTCCA CT- TTA TTA TTA TT- GTA TTA TTA CTA TTA TTA T
1 -TTA TTA TT--A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26387424 CACCATGTTA
Statistics
Matches: 150, Mismatches: 20, Indels: 20
0.79 0.11 0.11
Matches are distributed among these distances:
2 6 0.04
3 135 0.90
4 7 0.05
5 2 0.01
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:26387547 original size:9 final size:8
Alignment explanation
Indices: 26387535--26387601 Score: 52
Period size: 7 Copynumber: 8.5 Consensus size: 8
26387525 TCGTTATTGG
26387535 TATTTGTAT
1 TATTT-TAT
26387544 TATTATTAT
1 TATT-TTAT
*
26387553 TATTTTCAC
1 TATTTT-AT
*
26387562 CA-TTT-T
1 TATTTTAT
26387568 TATTTT-T
1 TATTTTAT
*
26387575 TATTTTTT
1 TATTTTAT
26387583 TATTTT-T
1 TATTTTAT
26387590 TATTTTAT
1 TATTTTAT
26387598 TATT
1 TATT
26387602 AATGTTGTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
6 1 0.02
7 17 0.35
8 17 0.35
9 13 0.27
10 1 0.02
ACGTcount: A:0.21, C:0.04, G:0.01, T:0.73
Consensus pattern (8 bp):
TATTTTAT
Found at i:26387572 original size:33 final size:32
Alignment explanation
Indices: 26387502--26387588 Score: 79
Period size: 33 Copynumber: 2.7 Consensus size: 32
26387492 CTTACGTTGT
* ***
26387502 TATTATTATTACTATTATTATTTTCGTTATTGG
1 TATT-TTATTATTATTATTATTTTCACCATTGG
**
26387535 TATTTGTATTATTATTATTATTTTCACCATTTT
1 TATTT-TATTATTATTATTATTTTCACCATTGG
*
26387568 TATTTT-TTATT-TTTTTATTTT
1 TATTTTATTATTATTATTATTTT
26387589 TTATTTTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
30 9 0.20
31 5 0.11
32 2 0.04
33 30 0.65
ACGTcount: A:0.22, C:0.06, G:0.05, T:0.68
Consensus pattern (32 bp):
TATTTTATTATTATTATTATTTTCACCATTGG
Found at i:26387576 original size:7 final size:7
Alignment explanation
Indices: 26387564--26387601 Score: 58
Period size: 7 Copynumber: 5.1 Consensus size: 7
26387554 ATTTTCACCA
26387564 TTTTTAT
1 TTTTTAT
26387571 TTTTTATT
1 TTTTTA-T
26387579 TTTTTAT
1 TTTTTAT
26387586 TTTTTAT
1 TTTTTAT
26387593 TTTATTAT
1 TTT-TTAT
26387601 T
1 T
26387602 AATGTTGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 17 0.59
8 12 0.41
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTAT
Found at i:26387581 original size:8 final size:8
Alignment explanation
Indices: 26387564--26387601 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
26387554 ATTTTCACCA
26387564 TTTTTA-T
1 TTTTTATT
26387571 TTTTTATT
1 TTTTTATT
26387579 TTTTTA-T
1 TTTTTATT
26387586 TTTTTATT
1 TTTTTATT
*
26387594 TTATTATT
1 TTTTTATT
26387602 AATGTTGTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 13 0.46
8 15 0.54
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTATT
Found at i:26387582 original size:15 final size:15
Alignment explanation
Indices: 26387564--26387601 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
26387554 ATTTTCACCA
26387564 TTTTTATTTTTTATT
1 TTTTTATTTTTTATT
26387579 TTTTTATTTTTTATT
1 TTTTTATTTTTTATT
*
26387594 TTATTATT
1 TTTTTATT
26387602 AATGTTGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTATTTTTTATT
Found at i:26389286 original size:13 final size:14
Alignment explanation
Indices: 26389268--26389296 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26389258 GTAAAATTCT
26389268 AAAAATTTC-AAAA
1 AAAAATTTCTAAAA
26389281 AAAAATTTCTAAAA
1 AAAAATTTCTAAAA
26389295 AA
1 AA
26389297 TATATAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATTTCTAAAA
Found at i:26393310 original size:23 final size:21
Alignment explanation
Indices: 26393267--26393327 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
26393257 TGTGAATTAA
26393267 GTTTATAATAATTAATTTATT
1 GTTTATAATAATTAATTTATT
* *
26393288 GTTTTTAATAGTTATATTGTATT
1 GTTTATAATAATTA-ATT-TATT
* *
26393311 G-TTACAATAATTTATTT
1 GTTTATAATAATTAATTT
26393328 TACCTCTGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 1 0.03
21 15 0.47
22 11 0.34
23 5 0.16
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.57
Consensus pattern (21 bp):
GTTTATAATAATTAATTTATT
Found at i:26407842 original size:58 final size:60
Alignment explanation
Indices: 26407752--26407893 Score: 200
Period size: 58 Copynumber: 2.4 Consensus size: 60
26407742 CCCTTAGGTA
* * * *
26407752 AACCTTTGTGTGCGAACCTCTATA-AGCGATCCCCATTTGCATGTG-AACCATATAGGCT
1 AACCCTTGTATGCGAACCCCTATAGAGCGATCCCCATTTGCATGTGAAACCATATAGGCG
* * *
26407810 AACCCTTGTATGCAAACCCCTATAGA-CGATCCCCCTTTGCATGTGAAACCCTATAGGCG
1 AACCCTTGTATGCGAACCCCTATAGAGCGATCCCCATTTGCATGTGAAACCATATAGGCG
26407869 AACCCTTGTATGCGAACCCCTATAG
1 AACCCTTGTATGCGAACCCCTATAG
26407894 GCAAGCCCTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
58 38 0.51
59 36 0.49
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (60 bp):
AACCCTTGTATGCGAACCCCTATAGAGCGATCCCCATTTGCATGTGAAACCATATAGGCG
Found at i:26407893 original size:28 final size:28
Alignment explanation
Indices: 26407802--26407943 Score: 137
Period size: 28 Copynumber: 5.0 Consensus size: 28
26407792 ATGTGAACCA
* *
26407802 TATAGGCTAACCCTTGTATGCAAACCCC
1 TATAGGCGAACCCTTGTATGCGAACCCC
* * * * *
26407830 TATAGACGATCCCCCTTTGCATGTGAAACCC
1 TATAGGCGA--ACCC-TTGTATGCGAACCCC
26407861 TATAGGCGAACCCTTGTATGCGAACCCC
1 TATAGGCGAACCCTTGTATGCGAACCCC
26407889 TATAGGC-AAGCCCTTGTATGC-AACCCCC
1 TATAGGCGAA-CCCTTGTATGCGAA-CCCC
*
26407917 TATAGGCGAACACCTAGT-TGCGAACCC
1 TATAGGCGAAC-CCTTGTATGCGAACCC
26407944 ATGCGCAAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
27 4 0.04
28 55 0.59
29 12 0.13
30 3 0.03
31 19 0.20
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (28 bp):
TATAGGCGAACCCTTGTATGCGAACCCC
Found at i:26413223 original size:9 final size:9
Alignment explanation
Indices: 26413209--26413280 Score: 56
Period size: 11 Copynumber: 7.4 Consensus size: 9
26413199 AAGTAGAAAC
26413209 TTATAAAAA
1 TTATAAAAA
26413218 TTATAAAATAA
1 TTAT-AAA-AA
*
26413229 TTATACAAA
1 TTATAAAAA
26413238 TTATAAAAATA
1 TTAT-AAAA-A
*
26413249 TTATACAAAT
1 TTATA-AAAA
26413259 TTACTAAAAA
1 TTA-TAAAAA
*
26413269 -TATAAATA
1 TTATAAAAA
26413277 TTAT
1 TTAT
26413281 TAATATATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
8 5 0.10
9 15 0.29
10 15 0.29
11 16 0.31
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (9 bp):
TTATAAAAA
Found at i:26413238 original size:20 final size:20
Alignment explanation
Indices: 26413209--26413271 Score: 83
Period size: 20 Copynumber: 3.0 Consensus size: 20
26413199 AAGTAGAAAC
*
26413209 TTATAAAAATTAT-AAAATAA
1 TTATACAAATTATAAAAAT-A
26413229 TTATACAAATTATAAAAATA
1 TTATACAAATTATAAAAATA
26413249 TTATACAAATTTACTAAAAATA
1 TTATACAAA-TTA-TAAAAATA
26413271 T
1 T
26413272 AAATATTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
20 22 0.56
21 8 0.21
22 9 0.23
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
TTATACAAATTATAAAAATA
Found at i:26413671 original size:9 final size:9
Alignment explanation
Indices: 26413657--26413710 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
26413647 TAATTTTCTG
26413657 TTAAAAATT
1 TTAAAAATT
26413666 TTAAAAATT
1 TTAAAAATT
*
26413675 ATT-AAAATA
1 -TTAAAAATT
26413684 TTAAAATATT
1 TTAAAA-ATT
* *
26413694 ATGAAAATT
1 TTAAAAATT
26413703 TTAAAAAT
1 TTAAAAAT
26413711 AATAAAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
8 2 0.06
9 26 0.72
10 8 0.22
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (9 bp):
TTAAAAATT
Found at i:26413681 original size:19 final size:19
Alignment explanation
Indices: 26413657--26413719 Score: 69
Period size: 18 Copynumber: 3.4 Consensus size: 19
26413647 TAATTTTCTG
26413657 TTAAAAATTTTAAAAATTA
1 TTAAAAATTTTAAAAATTA
*
26413676 TT-AAAATATTAAAATATTA
1 TTAAAAATTTTAAAA-ATTA
*
26413695 -TGAAAATTTTAAAAA-TA
1 TTAAAAATTTTAAAAATTA
*
26413712 ATAAAAAT
1 TTAAAAAT
26413720 AGAAAGTTAC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 2 0.05
18 19 0.50
19 17 0.45
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
TTAAAAATTTTAAAAATTA
Found at i:26414203 original size:4 final size:4
Alignment explanation
Indices: 26414194--26414226 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
26414184 ATCTAACCTC
26414194 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
26414227 ATAATGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:26418892 original size:2 final size:2
Alignment explanation
Indices: 26418885--26418910 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26418875 GTATACATAT
26418885 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
26418911 GGAAGATGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26422553 original size:15 final size:15
Alignment explanation
Indices: 26422533--26422565 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26422523 TTCCAAATGT
26422533 TAGTTGTTCTCAACA
1 TAGTTGTTCTCAACA
*
26422548 TAGTTGTTCTCAATA
1 TAGTTGTTCTCAACA
26422563 TAG
1 TAG
26422566 AGATTGTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (15 bp):
TAGTTGTTCTCAACA
Found at i:26422709 original size:16 final size:16
Alignment explanation
Indices: 26422667--26422710 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
26422657 TCTAAATACA
*
26422667 AGTTGTTCCAAAACAT
1 AGTTGTTCCTAAACAT
*
26422683 GGTTGTT-CTAAACAT
1 AGTTGTTCCTAAACAT
*
26422698 AGTTATTCCTAAA
1 AGTTGTTCCTAAA
26422711 ATGTCATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (16 bp):
AGTTGTTCCTAAACAT
Found at i:26425775 original size:29 final size:27
Alignment explanation
Indices: 26425725--26425778 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
26425715 GATTTTTGAC
*
26425725 AAAAATGTCAATTAGGGATTAAATTCA
1 AAAAATGTAAATTAGGGATTAAATTCA
*
26425752 AAAAAGTGTAAATTGAGGGGTTAAATT
1 AAAAA-TGTAAATT-AGGGATTAAATT
26425779 GTGAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 5 0.22
28 7 0.30
29 11 0.48
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (27 bp):
AAAAATGTAAATTAGGGATTAAATTCA
Found at i:26429738 original size:40 final size:40
Alignment explanation
Indices: 26429541--26429775 Score: 196
Period size: 39 Copynumber: 6.0 Consensus size: 40
26429531 ACTTGAAACC
* ** *
26429541 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
* * *
26429580 AATTCCAGC-TCGA-AGCCTGCGGGACTTT-TGCCCGGACAT
1 AATTCCAGCAT--ATAGCCTGCGGGTCTTTAAGCCCGGATAT
* *** * * * *
26429619 ATTTCCAGCGCGTAGCCTGC-GGACCTTAAGTCCGGTTAT
1 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
* * * * *
26429658 AATTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGGTAT
1 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
* *
26429697 AATTCCATCATATAGCTTGCGGGTCTTTAAGCCCGGATAT
1 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
26429737 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
26429776 CACATCAAAT
Statistics
Matches: 163, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
38 16 0.10
39 95 0.58
40 52 0.32
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
Found at i:26434627 original size:17 final size:20
Alignment explanation
Indices: 26434607--26434645 Score: 57
Period size: 17 Copynumber: 2.1 Consensus size: 20
26434597 CCTTTAACTA
26434607 ATTGTT-TT-CTTTT-AATT
1 ATTGTTATTACTTTTAAATT
26434624 ATTGTTATTACTTTTAAATT
1 ATTGTTATTACTTTTAAATT
26434644 AT
1 AT
26434646 ACTAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 5 0.26
20 6 0.32
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (20 bp):
ATTGTTATTACTTTTAAATT
Found at i:26439240 original size:39 final size:39
Alignment explanation
Indices: 26439150--26439522 Score: 570
Period size: 39 Copynumber: 9.5 Consensus size: 39
26439140 ATAAAGCATG
* * * *
26439150 CGGGACTTTAAGCCCGAATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
**
26439190 CGGGACTTTAGCTTGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
26439230 CGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
26439269 CGGGGCTTAGCCCGAATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
26439308 CGGGGCTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
26439347 CGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
26439386 CGGAACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
26439425 CAGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
26439464 CGAGACTTAG-CCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
26439502 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
26439523 TTATCCATTA
Statistics
Matches: 311, Mismatches: 20, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
38 37 0.12
39 254 0.82
40 20 0.06
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:26443087 original size:23 final size:22
Alignment explanation
Indices: 26443044--26443090 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
26443034 GTATGGGACA
*
26443044 AAAAAAATTCAAGTATCAATTT
1 AAAAAAATTCAAGTACCAATTT
*
26443066 AAAAAAATTCAAGTACCAAATT
1 AAAAAAATTCAAGTACCAATTT
26443088 AAA
1 AAA
26443091 TATTGAAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.11, G:0.04, T:0.26
Consensus pattern (22 bp):
AAAAAAATTCAAGTACCAATTT
Found at i:26445326 original size:3 final size:3
Alignment explanation
Indices: 26445318--26445358 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
26445308 GGGCGCATGC
26445318 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26445359 TTGAGGGAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26451612 original size:26 final size:25
Alignment explanation
Indices: 26451583--26451646 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
26451573 AAAACTATAC
26451583 ATATATTATTATTAAAAATACTATTT
1 ATATA-TATTATTAAAAATACTATTT
**
26451609 ATATAT-TTATATAAAAATTTTATTT
1 ATATATATTAT-TAAAAATACTATTT
26451634 ATCATATATTATT
1 AT-ATATATTATT
26451647 TTCCTATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 4 0.12
25 15 0.45
26 10 0.30
27 4 0.12
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (25 bp):
ATATATATTATTAAAAATACTATTT
Found at i:26451623 original size:25 final size:25
Alignment explanation
Indices: 26451556--26451645 Score: 69
Period size: 26 Copynumber: 3.6 Consensus size: 25
26451546 TAGATATATC
* *
26451556 ATTTATTTATTT-TA-AAAAAAACT
1 ATTTATATATTTATATAAAAATACT
**
26451579 ATACATATA-TTATTATTAAAAATACT
1 ATTTATATATTTA-TA-TAAAAATACT
**
26451605 ATTTATATATTTATATAAAAATTTT
1 ATTTATATATTTATATAAAAATACT
26451630 ATTTATCATATATTAT
1 ATTTAT-ATAT-TTAT
26451646 TTTCCTATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
22 2 0.04
23 6 0.12
24 2 0.04
25 14 0.27
26 21 0.40
27 7 0.13
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTTATATATTTATATAAAAATACT
Found at i:26451672 original size:10 final size:10
Alignment explanation
Indices: 26451657--26451719 Score: 56
Period size: 10 Copynumber: 5.8 Consensus size: 10
26451647 TTCCTATATA
26451657 TATTATATTT
1 TATTATATTT
26451667 TATTATATAACATT
1 TATTATAT----TT
26451681 TATTATATTT
1 TATTATATTT
*
26451691 TATTATATAT
1 TATTATATTT
26451701 TACTTATTATTT
1 TA-TTA-TATTT
26451713 T-TTATAT
1 TATTATAT
26451720 ATGTTATGTA
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
9 3 0.07
10 24 0.53
11 3 0.07
12 5 0.11
14 10 0.22
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (10 bp):
TATTATATTT
Found at i:26451673 original size:17 final size:16
Alignment explanation
Indices: 26451631--26451714 Score: 50
Period size: 17 Copynumber: 5.2 Consensus size: 16
26451621 AAAAATTTTA
*
26451631 TTTATCATATATTATT
1 TTTATTATATATTATT
26451647 TTCCTA-TATATATTATAT
1 TT--TATTATATATTAT-T
**
26451665 TTTATTATATA--ACA
1 TTTATTATATATTATT
*
26451679 TTTATTATATTTTATT
1 TTTATTATATATTATT
*
26451695 ATATATTACT-TATTATT
1 -TTTATTA-TATATTATT
26451712 TTT
1 TTT
26451715 TATATATGTT
Statistics
Matches: 51, Mismatches: 9, Indels: 16
0.67 0.12 0.21
Matches are distributed among these distances:
14 10 0.20
15 1 0.02
16 7 0.14
17 27 0.53
18 6 0.12
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATTATATATTATT
Found at i:26451673 original size:19 final size:19
Alignment explanation
Indices: 26451625--26451726 Score: 66
Period size: 19 Copynumber: 5.0 Consensus size: 19
26451615 TTATATAAAA
26451625 ATTTTATT-TATCATA-TATT
1 ATTTTATTATAT-ATATTA-T
**
26451644 ATTTTCCTATATATATTAT
1 ATTTTATTATATATATTAT
26451663 ATTTTATTATATAACATTTATTAT
1 ATTTTATTATAT---A--TATTAT
26451687 ATTTTATTATATATTACTTATT
1 ATTTTATTATATA-TA-TTA-T
*
26451709 ATTTT-TTATATATGTTAT
1 ATTTTATTATATATATTAT
26451727 GTATATCGTA
Statistics
Matches: 69, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
18 1 0.01
19 23 0.33
20 9 0.13
21 11 0.16
22 7 0.10
24 18 0.26
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (19 bp):
ATTTTATTATATATATTAT
Found at i:26451684 original size:24 final size:24
Alignment explanation
Indices: 26451657--26451721 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
26451647 TTCCTATATA
*
26451657 TATTATATTTTATTATATAACATT
1 TATTATATTTTATTATATAACACT
**
26451681 TATTATATTTTATTATATATTACT
1 TATTATATTTTATTATATAACACT
*
26451705 TATTATTTTTTA-TATAT
1 TATTATATTTTATTATAT
26451722 GTTATGTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 5 0.14
24 32 0.86
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATATTTTATTATATAACACT
Found at i:26451685 original size:41 final size:38
Alignment explanation
Indices: 26451625--26451702 Score: 88
Period size: 41 Copynumber: 2.0 Consensus size: 38
26451615 TTATATAAAA
26451625 ATTTTATTTATCATATATTAT-TTTCCTA-TATATATTAT
1 ATTTTATTTATCATATATTATATTT--TATTATATATTAT
*
26451663 ATTTTATTATATAACATTTATTATATTTTATTATATATTA
1 ATTTTATT-TAT--CATATATTATATTTTATTATATATTA
26451703 CTTATTATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
38 8 0.24
39 3 0.09
40 2 0.06
41 18 0.53
42 3 0.09
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (38 bp):
ATTTTATTTATCATATATTATATTTTATTATATATTAT
Found at i:26451999 original size:22 final size:25
Alignment explanation
Indices: 26451974--26452034 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
26451964 TTTTTAAACC
26451974 AATATATT-TTA-TTT-TTATATAT
1 AATATATTATTATTTTATTATATAT
26451996 AATA-ATTATTATTTTATTATATAT
1 AATATATTATTATTTTATTATATAT
*
26452020 TATATATTATATATT
1 AATATATTAT-TATT
26452035 AAATACTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 3 0.09
22 7 0.21
23 3 0.09
24 11 0.33
25 5 0.15
26 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
AATATATTATTATTTTATTATATAT
Found at i:26452022 original size:7 final size:7
Alignment explanation
Indices: 26451988--26452035 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
26451978 TATTTTATTT
26451988 TTATATA
1 TTATATA
*
26451995 TAATA-A
1 TTATATA
26452001 TTAT-TA
1 TTATATA
26452007 TT-T-TA
1 TTATATA
26452012 TTATATA
1 TTATATA
26452019 TTATATA
1 TTATATA
26452026 TTATATA
1 TTATATA
26452033 TTA
1 TTA
26452036 AATACTATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
5 5 0.14
6 8 0.22
7 23 0.64
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TTATATA
Found at i:26452060 original size:25 final size:28
Alignment explanation
Indices: 26452025--26452075 Score: 81
Period size: 25 Copynumber: 1.9 Consensus size: 28
26452015 TATATTATAT
26452025 ATTATATATTAAATA-C-TATTTTTAAA
1 ATTATATATTAAATATCATATTTTTAAA
26452051 ATTAT-TATTAAATATCATATTTTTA
1 ATTATATATTAAATATCATATTTTTA
26452076 TTTGTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 6 0.26
27 8 0.35
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (28 bp):
ATTATATATTAAATATCATATTTTTAAA
Found at i:26464355 original size:204 final size:205
Alignment explanation
Indices: 26463875--26464662 Score: 1285
Period size: 204 Copynumber: 3.8 Consensus size: 205
26463865 TAGGCTGCAG
* *
26463875 CATAGCAGATCTCACTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTG
1 CATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTG
* *
26463940 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
66 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACATTGAAGCAAATCT
* *
26464005 AAGATGATTTGGTATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGTGTCTCCATTTTGACGG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCGTCTCCATTTTGACGG
*
26464070 AGAGTAGATA
196 AGAGCAGATA
*
26464080 CATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTTTG
1 CATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTG
* * *
26464145 TTTACAAGGAGCAAATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTATATTGAAGCAAATCT
66 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACATTGAAGCAAATCT
*
26464210 AAGATAATTTGGCATCTCTGTATTGTCA-AGAACAAATCGAAGTCTGGCGTCTCCATTTTGACGG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCGTCTCCATTTTGACGG
26464274 AGAGCAGATA
196 AGAGCAGATA
* *
26464284 CATAGCAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTA
1 CATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTG
* *
26464349 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACAATGAAGCAAATCT
66 TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACATTGAAGCAAATCT
* * * *
26464414 AAGATGATTTGGCATCTCTGTATTGTTAGAGAATAAATTGAAGTCTGGCGTCTCCATATTCGACG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCGTCTCCAT-TTTGACG
*
26464479 GAGAGCAGACA
195 GAGAGCAGATA
* * * *
26464490 CATAGCAGATCTCACCTTCAGATAATTT-CACTGAAGCAGATCCAAGATGATTTGACATTCTTGT
1 CATAGCAGATCTAACCTTCAGAT-GTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGT
*
26464554 GTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGA-TGAAGCAAAT
65 GTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAC-ATTGAAGCAAAT
*
26464618 CTAAGATGATTTGGCATCTTTGTATTGTCAGAGAACAAATCGAAG
129 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
26464663 AAGCAGATTT
Statistics
Matches: 543, Mismatches: 36, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
204 192 0.35
205 176 0.32
206 171 0.31
207 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (205 bp):
CATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTG
TTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACATTGAAGCAAATCT
AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCGTCTCCATTTTGACGG
AGAGCAGATA
Found at i:26466320 original size:24 final size:24
Alignment explanation
Indices: 26466293--26466353 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 24
26466283 AAACTATACA
26466293 TATATTATTATTAAAAATACTATT
1 TATATTATTATTAAAAATACTATT
**
26466317 TATA-TATT-TATAAAAATTTTATT
1 TATATTATTAT-TAAAAATACTATT
26466340 TATCATATATTATT
1 TAT-AT-TATTATT
26466354 TTCCTATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
22 1 0.03
23 18 0.60
24 5 0.17
26 5 0.17
27 1 0.03
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATTATTATTAAAAATACTATT
Found at i:26466379 original size:10 final size:10
Alignment explanation
Indices: 26466364--26466426 Score: 56
Period size: 10 Copynumber: 5.8 Consensus size: 10
26466354 TTCCTATATA
26466364 TATTATATTT
1 TATTATATTT
26466374 TATTATATAACATT
1 TATTATAT----TT
26466388 TATTATATTT
1 TATTATATTT
*
26466398 TATTATATAT
1 TATTATATTT
26466408 TACTTATTATTT
1 TA-TTA-TATTT
26466420 T-TTATAT
1 TATTATAT
26466427 ATGTTATGTA
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
9 3 0.07
10 24 0.53
11 3 0.07
12 5 0.11
14 10 0.22
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (10 bp):
TATTATATTT
Found at i:26466380 original size:17 final size:16
Alignment explanation
Indices: 26466338--26466421 Score: 50
Period size: 17 Copynumber: 5.2 Consensus size: 16
26466328 AAAAATTTTA
*
26466338 TTTATCATATATTATT
1 TTTATTATATATTATT
26466354 TTCCTA-TATATATTATAT
1 TT--TATTATATATTAT-T
**
26466372 TTTATTATATA--ACA
1 TTTATTATATATTATT
*
26466386 TTTATTATATTTTATT
1 TTTATTATATATTATT
*
26466402 ATATATTACT-TATTATT
1 -TTTATTA-TATATTATT
26466419 TTT
1 TTT
26466422 TATATATGTT
Statistics
Matches: 51, Mismatches: 9, Indels: 16
0.67 0.12 0.21
Matches are distributed among these distances:
14 10 0.20
15 1 0.02
16 7 0.14
17 27 0.53
18 6 0.12
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATTATATATTATT
Found at i:26466380 original size:19 final size:19
Alignment explanation
Indices: 26466332--26466433 Score: 66
Period size: 19 Copynumber: 5.0 Consensus size: 19
26466322 ATTTATAAAA
26466332 ATTTTATT-TATCATA-TATT
1 ATTTTATTATAT-ATATTA-T
**
26466351 ATTTTCCTATATATATTAT
1 ATTTTATTATATATATTAT
26466370 ATTTTATTATATAACATTTATTAT
1 ATTTTATTATAT---A--TATTAT
26466394 ATTTTATTATATATTACTTATT
1 ATTTTATTATATA-TA-TTA-T
*
26466416 ATTTT-TTATATATGTTAT
1 ATTTTATTATATATATTAT
26466434 GTATATCGTA
Statistics
Matches: 69, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
18 1 0.01
19 23 0.33
20 9 0.13
21 11 0.16
22 7 0.10
24 18 0.26
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (19 bp):
ATTTTATTATATATATTAT
Found at i:26466391 original size:24 final size:24
Alignment explanation
Indices: 26466364--26466428 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
26466354 TTCCTATATA
*
26466364 TATTATATTTTATTATATAACATT
1 TATTATATTTTATTATATAACACT
**
26466388 TATTATATTTTATTATATATTACT
1 TATTATATTTTATTATATAACACT
*
26466412 TATTATTTTTTA-TATAT
1 TATTATATTTTATTATAT
26466429 GTTATGTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 5 0.14
24 32 0.86
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATATTTTATTATATAACACT
Found at i:26466392 original size:41 final size:38
Alignment explanation
Indices: 26466332--26466409 Score: 88
Period size: 41 Copynumber: 2.0 Consensus size: 38
26466322 ATTTATAAAA
26466332 ATTTTATTTATCATATATTAT-TTTCCTA-TATATATTAT
1 ATTTTATTTATCATATATTATATTT--TATTATATATTAT
*
26466370 ATTTTATTATATAACATTTATTATATTTTATTATATATTA
1 ATTTTATT-TAT--CATATATTATATTTTATTATATATTA
26466410 CTTATTATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
38 8 0.24
39 3 0.09
40 2 0.06
41 18 0.53
42 3 0.09
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (38 bp):
ATTTTATTTATCATATATTATATTTTATTATATATTAT
Found at i:26466571 original size:4 final size:4
Alignment explanation
Indices: 26466562--26466591 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
26466552 CATTTCATTA
26466562 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
26466592 TATGTGTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:26466633 original size:23 final size:21
Alignment explanation
Indices: 26466604--26466651 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
26466594 TGTGTTATTT
*
26466604 TATTTTAAATTATATCTTTTATA
1 TATTTTAAA-TAT-TATTTTATA
*
26466627 TATTTTATATATTATTTTATA
1 TATTTTAAATATTATTTTATA
26466648 TATT
1 TATT
26466652 ATTTTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 12 0.52
22 3 0.13
23 8 0.35
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
TATTTTAAATATTATTTTATA
Found at i:26466658 original size:14 final size:12
Alignment explanation
Indices: 26466623--26466656 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
26466613 TTATATCTTT
26466623 TATA-TATTTTA
1 TATATTATTTTA
26466634 TATATTATTTTA
1 TATATTATTTTA
26466646 TATATTATTTT
1 TATATTATTTT
26466657 TTTAACCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTATTTTA
Found at i:26466676 original size:3 final size:3
Alignment explanation
Indices: 26466670--26466724 Score: 51
Period size: 3 Copynumber: 17.7 Consensus size: 3
26466660 AACCAATATA
*
26466670 TAT TATT TAT TAT ATAT TAT TA- TAT TAT TAT TA- TAA TAT ATATT TAT
1 TAT TA-T TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT -TA-T TAT
26466717 TAT TAT TA
1 TAT TAT TA
26466725 ATATCATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 12
0.78 0.02 0.21
Matches are distributed among these distances:
2 4 0.09
3 30 0.67
4 10 0.22
5 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:26466685 original size:14 final size:13
Alignment explanation
Indices: 26466666--26466722 Score: 64
Period size: 14 Copynumber: 4.2 Consensus size: 13
26466656 TTTTAACCAA
26466666 TATATATTATTTAT
1 TATATATTA-TTAT
26466680 TATATATTATTA-
1 TATATATTATTAT
26466692 TAT-TATTATTAT
1 TATATATTATTAT
26466704 AATATATATTTATTAT
1 --TATATA-TTATTAT
26466720 TAT
1 TAT
26466723 TAATATCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
11 8 0.21
12 3 0.08
13 3 0.08
14 15 0.39
15 2 0.05
16 7 0.18
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATATATTATTAT
Found at i:26466693 original size:22 final size:22
Alignment explanation
Indices: 26466668--26466734 Score: 86
Period size: 22 Copynumber: 3.0 Consensus size: 22
26466658 TTAACCAATA
26466668 TATATTATTTATTATATAT-TAT
1 TATATTA-TTATTATATATATAT
26466690 TATATTATTATTATAATATATAT
1 TATATTATTATTAT-ATATATAT
26466713 T-TATTATTATTA-ATATCATAT
1 TATATTATTATTATATAT-ATAT
26466734 T
1 T
26466735 TTTATTTGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.10
21 12 0.29
22 22 0.52
23 4 0.10
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (22 bp):
TATATTATTATTATATATATAT
Found at i:26471945 original size:21 final size:21
Alignment explanation
Indices: 26471919--26471959 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
26471909 ACAAACTAAG
26471919 GCTTATGTTTTTGTGAATGAA
1 GCTTATGTTTTTGTGAATGAA
26471940 GCTTATGTTTTTGTGAATGA
1 GCTTATGTTTTTGTGAATGA
26471960 CTATTGCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.05, G:0.24, T:0.49
Consensus pattern (21 bp):
GCTTATGTTTTTGTGAATGAA
Found at i:26474500 original size:30 final size:30
Alignment explanation
Indices: 26474466--26474541 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
26474456 AAAAATAAAA
*
26474466 AATAATAAAACATAAAATTTAAAATT-TATT
1 AATAATAAAACATAAAATAT-AAATTATATT
* * *
26474496 AATAATAACACATGAAATATATATTATATT
1 AATAATAAAACATAAAATATAAATTATATT
*
26474526 AA-AATAAAAAATAAAA
1 AATAATAAAACATAAAA
26474542 AATTATATTG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 15 0.39
30 23 0.61
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (30 bp):
AATAATAAAACATAAAATATAAATTATATT
Found at i:26475497 original size:20 final size:20
Alignment explanation
Indices: 26475456--26475499 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26475446 ACGGGAGTAA
* *
26475456 TAAAGTATACATAATACAAT
1 TAAAGTATAAATAATAAAAT
26475476 TAAAGTATAAAT-ATAAATAT
1 TAAAGTATAAATAATAAA-AT
26475496 TAAA
1 TAAA
26475500 ATAAAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
TAAAGTATAAATAATAAAAT
Found at i:26476164 original size:29 final size:29
Alignment explanation
Indices: 26476131--26476188 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
26476121 GTTTGCCCAC
*
26476131 GATGTTTTTTTTTAAGTTACAATTGTTCT
1 GATGTTTTTTTTAAAGTTACAATTGTTCT
26476160 GATGTTTTTTTTAAAGTTACAATTGTTCT
1 GATGTTTTTTTTAAAGTTACAATTGTTCT
26476189 AATACAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.07, G:0.14, T:0.57
Consensus pattern (29 bp):
GATGTTTTTTTTAAAGTTACAATTGTTCT
Found at i:26478363 original size:75 final size:75
Alignment explanation
Indices: 26478199--26478376 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
26478189 TGGGCACATA
* * * *
26478199 ATCGTCGGTTAATCCGACTAGCGCTGGGTGCAAACACCGTTGGTTTATCCAACTAGAGCTGGGCT
1 ATCGTCGGTTAATCCGACTAGCACTGGGTACAAACACCGTTGGTCTATCCAACCAGAGCTGGGCT
*
26478264 CATAATAATT
66 CACAATAATT
* * ** *
26478274 ATCGTCGGTAAATCCGACTAGCACTGGGTACAAATATTGTTGGTCTATCCAACCAGAGTTGGGCT
1 ATCGTCGGTTAATCCGACTAGCACTGGGTACAAACACCGTTGGTCTATCCAACCAGAGCTGGGCT
* *
26478339 CACATTTATT
66 CACAATAATT
* * *
26478349 GGT-GTTGGTTAATCCAACTAGCACTGGG
1 -ATCGTCGGTTAATCCGACTAGCACTGGG
26478377 CGTAACTTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
75 85 0.99
76 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (75 bp):
ATCGTCGGTTAATCCGACTAGCACTGGGTACAAACACCGTTGGTCTATCCAACCAGAGCTGGGCT
CACAATAATT
Found at i:26481609 original size:6 final size:6
Alignment explanation
Indices: 26481594--26481685 Score: 118
Period size: 6 Copynumber: 15.8 Consensus size: 6
26481584 AAAATAAAGA
*
26481594 AAATAT AAATAC AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
* * * *
26481642 AATTAT AATTAT AATTAT AATTAT AAATA- AAATA- AAATA- AAATA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATA
26481686 AATTGGGTTG
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
5 15 0.18
6 67 0.82
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (6 bp):
AAATAT
Found at i:26484536 original size:20 final size:20
Alignment explanation
Indices: 26484513--26484569 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
26484503 ATTCATTCAT
26484513 ATAACCAGTAGTTCATCA-AA
1 ATAA-CAGTAGTTCATCAGAA
* * *
26484533 ATAAACAATAGTTTATCAGTA
1 AT-AACAGTAGTTCATCAGAA
*
26484554 ATAACAGTAATTCATC
1 ATAACAGTAGTTCATC
26484570 CGTATCAACG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.30
Consensus pattern (20 bp):
ATAACAGTAGTTCATCAGAA
Found at i:26484798 original size:23 final size:23
Alignment explanation
Indices: 26484771--26484847 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
26484761 TGATGAATAA
* *
26484771 TAAGCGCTATTGAGCTGAAACGG
1 TAAGCTCTATCGAGCTGAAACGG
* *
26484794 TAAGCTCTATCGAGATG-AACAG
1 TAAGCTCTATCGAGCTGAAACGG
*
26484816 TAAGCTC-ATACGAGCTGAAATGG
1 TAAGCTCTAT-CGAGCTGAAACGG
26484839 TAAGCTCTA
1 TAAGCTCTA
26484848 ATGACTAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.05
22 17 0.39
23 24 0.55
24 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (23 bp):
TAAGCTCTATCGAGCTGAAACGG
Found at i:26484820 original size:45 final size:45
Alignment explanation
Indices: 26484762--26484847 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
26484752 TTCCTGAGTT
* *
26484762 GATGAATAATAAGCGC-TATTGAGCTGAAACGGTAAGCTCTATCGA
1 GATGAACAATAAGCGCATA-CGAGCTGAAACGGTAAGCTCTATCGA
* * *
26484807 GATGAACAGTAAGCTCATACGAGCTGAAATGGTAAGCTCTA
1 GATGAACAATAAGCGCATACGAGCTGAAACGGTAAGCTCTA
26484848 ATGACTAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
45 33 0.94
46 2 0.06
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (45 bp):
GATGAACAATAAGCGCATACGAGCTGAAACGGTAAGCTCTATCGA
Found at i:26484821 original size:22 final size:23
Alignment explanation
Indices: 26484786--26484847 Score: 67
Period size: 22 Copynumber: 2.7 Consensus size: 23
26484776 GCTATTGAGC
26484786 TGAAACGGTAAGCTCTAT-CGAGA
1 TGAAA-GGTAAGCTCTATACGAGA
*
26484809 TGAACA-GTAAGCTC-ATACGAGC
1 TGAA-AGGTAAGCTCTATACGAGA
26484831 TGAAATGGTAAGCTCTA
1 TGAAA-GGTAAGCTCTA
26484848 ATGACTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
21 3 0.09
22 16 0.48
23 12 0.36
24 2 0.06
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (23 bp):
TGAAAGGTAAGCTCTATACGAGA
Found at i:26484864 original size:23 final size:26
Alignment explanation
Indices: 26484838--26484894 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 26
26484828 AGCTGAAATG
26484838 GTAAGCTCTAATGA-CTAA-A-AACA
1 GTAAGCTCTAATGAGCTAATATAACA
* *
26484861 GTAAGCTCTTATGAGCTAATATATCA
1 GTAAGCTCTAATGAGCTAATATAACA
26484887 GTAAGCTC
1 GTAAGCTC
26484895 ATACAAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 13 0.45
24 4 0.14
25 1 0.03
26 11 0.38
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (26 bp):
GTAAGCTCTAATGAGCTAATATAACA
Found at i:26485732 original size:8 final size:8
Alignment explanation
Indices: 26485719--26485743 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26485709 TAATCTATCA
26485719 TTAAACAC
1 TTAAACAC
26485727 TTAAACAC
1 TTAAACAC
26485735 TTAAACAC
1 TTAAACAC
26485743 T
1 T
26485744 CAAGCATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (8 bp):
TTAAACAC
Found at i:26500725 original size:20 final size:20
Alignment explanation
Indices: 26500697--26500809 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
26500687 ATTCATTTCT
* *
26500697 ATTCGTATAAACTGTAATTC
1 ATTCATATAAACAGTAATTC
* *
26500717 ATTCATATAACCAGTAGTTC
1 ATTCATATAAACAGTAATTC
* *
26500737 A-TCTGTATAAACAGTAGTTC
1 ATTC-ATATAAACAGTAATTC
26500757 A-TCA-ATAATAACAGTAATTC
1 ATTCATAT-A-AACAGTAATTC
* * * *
26500777 ATCCGTATCAATAGTAATTC
1 ATTCATATAAACAGTAATTC
*
26500797 ATCCATATAAACA
1 ATTCATATAAACA
26500810 CATATCTTAT
Statistics
Matches: 73, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
18 2 0.03
19 3 0.04
20 65 0.89
21 1 0.01
22 2 0.03
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.34
Consensus pattern (20 bp):
ATTCATATAAACAGTAATTC
Done.