Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 95 of 328
Found at i:26500745 original size:40 final size:39
Alignment explanation
Indices: 26500700--26500806 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 39
26500690 CATTTCTATT
*
26500700 CGTATAAACTGTAATTCATTCATATAACCAGTAGTTCATC
1 CGTATAAACTGTAATTCATTCATATAA-CAGTAATTCATC
* * *
26500740 TGTATAAACAGTAGTTCA-TCAATAATAACAGTAATTCATC
1 CGTATAAACTGTAATTCATTC-AT-ATAACAGTAATTCATC
* *
26500780 CGTATCAA-TAGTAATTCATCCATATAA
1 CGTATAAACT-GTAATTCATTCATATAA
26500807 ACACATATCT
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
39 6 0.11
40 43 0.80
41 5 0.09
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (39 bp):
CGTATAAACTGTAATTCATTCATATAACAGTAATTCATC
Found at i:26501032 original size:22 final size:23
Alignment explanation
Indices: 26500975--26501067 Score: 95
Period size: 23 Copynumber: 4.1 Consensus size: 23
26500965 CCTTAGCTGA
* *
26500975 TGAACATTAAGCTCTAT-TGAGC
1 TGAACAGTAAGCTCTATACGAGC
*
26500997 TGAAACGGTAAGCTCTAT-CGAGC
1 TG-AACAGTAAGCTCTATACGAGC
26501020 TGAACAGTAAGCT-TATACGAGC
1 TGAACAGTAAGCTCTATACGAGC
* *
26501042 TAAAATAGTAAGCTCT-TACGAGC
1 T-GAACAGTAAGCTCTATACGAGC
26501065 TGA
1 TGA
26501068 TATATCGGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
21 3 0.05
22 19 0.32
23 37 0.62
24 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (23 bp):
TGAACAGTAAGCTCTATACGAGC
Found at i:26501042 original size:45 final size:45
Alignment explanation
Indices: 26500975--26501067 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
26500965 CCTTAGCTGA
* * * *
26500975 TGAACATTAAGCTCTATTGAGCTGAAACGGTAAGCTC-TATCGAGC
1 TGAACAGTAAGCTCTATCGAGCTAAAACAGTAAGCTCTTA-CGAGC
*
26501020 TGAACAGTAAGCT-TATACGAGCTAAAATAGTAAGCTCTTACGAGC
1 TGAACAGTAAGCTCTAT-CGAGCTAAAACAGTAAGCTCTTACGAGC
26501065 TGA
1 TGA
26501068 TATATCGGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
44 3 0.07
45 36 0.88
46 2 0.05
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATCGAGCTAAAACAGTAAGCTCTTACGAGC
Found at i:26502862 original size:35 final size:35
Alignment explanation
Indices: 26502816--26502885 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
26502806 AAGATCTCCC
*
26502816 CTTAATTTCGCTCCAGGAGTTTTGGGTTTTCTTTA
1 CTTAATTTCGCTCCAAGAGTTTTGGGTTTTCTTTA
26502851 CTTAATTTCGCTCCAAGAGTTTTGGGTTTTCTTTA
1 CTTAATTTCGCTCCAAGAGTTTTGGGTTTTCTTTA
26502886 TGTTTTGTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.16, C:0.17, G:0.19, T:0.49
Consensus pattern (35 bp):
CTTAATTTCGCTCCAAGAGTTTTGGGTTTTCTTTA
Found at i:26506717 original size:55 final size:55
Alignment explanation
Indices: 26506594--26506726 Score: 133
Period size: 55 Copynumber: 2.4 Consensus size: 55
26506584 TACGACATGG
* ** * * *
26506594 CCGTGGACGAACCTGCCAAAACAACACGGGCGTACGACACGCCTGTGCATTGAAA
1 CCGTGGACGAACCTGTCAAATTAACACGGGCGTACAACACGCCCGTGCATAGAAA
* * * * *
26506649 CTGTGGCCAAACCTGTCAAATTAACACGGGCGTGCAACACGCCCGTGCCA-AGCAA
1 CCGTGGACGAACCTGTCAAATTAACACGGGCGTACAACACGCCCGTG-CATAGAAA
* *
26506704 CCGTGGTCGAACCTGTTAAATTA
1 CCGTGGACGAACCTGTCAAATTA
26506727 CCATGGGTGT
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
55 60 0.97
56 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.24, T:0.17
Consensus pattern (55 bp):
CCGTGGACGAACCTGTCAAATTAACACGGGCGTACAACACGCCCGTGCATAGAAA
Found at i:26514182 original size:21 final size:23
Alignment explanation
Indices: 26514157--26514212 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 23
26514147 AATGAGTTCA
26514157 TATTTAT-G-TCACTCCTTCCCC
1 TATTTATAGATCACTCCTTCCCC
26514178 TATTTATAGTACATCACTCCTTCCCC
1 TATTTATAG---ATCACTCCTTCCCC
26514204 TATTTATAG
1 TATTTATAG
26514213 TACATAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.23
22 1 0.03
26 22 0.73
ACGTcount: A:0.21, C:0.30, G:0.05, T:0.43
Consensus pattern (23 bp):
TATTTATAGATCACTCCTTCCCC
Found at i:26514201 original size:26 final size:26
Alignment explanation
Indices: 26514165--26514217 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26514155 CATATTTATG
26514165 TCACTCCTTCCCCTATTTATAGTACA
1 TCACTCCTTCCCCTATTTATAGTACA
26514191 TCACTCCTTCCCCTATTTATAGTACA
1 TCACTCCTTCCCCTATTTATAGTACA
26514217 T
1 T
26514218 AAAAAACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.34, G:0.04, T:0.40
Consensus pattern (26 bp):
TCACTCCTTCCCCTATTTATAGTACA
Found at i:26517065 original size:17 final size:18
Alignment explanation
Indices: 26517043--26517077 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
26517033 ATTCTATTTC
26517043 TTTTCCA-AAAATGTTTA
1 TTTTCCAGAAAATGTTTA
26517060 TTTTCCAGTAAAATGTTT
1 TTTTCCAG-AAAATGTTT
26517078 TCCGGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (18 bp):
TTTTCCAGAAAATGTTTA
Found at i:26517088 original size:14 final size:14
Alignment explanation
Indices: 26517069--26517108 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
26517059 ATTTTCCAGT
* *
26517069 AAAATGTTTTCCGG
1 AAAATGATTTACGG
26517083 AAAATGATTTACGG
1 AAAATGATTTACGG
*
26517097 AAAATGAGTTAC
1 AAAATGATTTAC
26517109 TTTTCTGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (14 bp):
AAAATGATTTACGG
Found at i:26517120 original size:19 final size:19
Alignment explanation
Indices: 26517096--26517134 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26517086 ATGATTTACG
26517096 GAAAATGAGTTACTTTTCT
1 GAAAATGAGTTACTTTTCT
*
26517115 GAAAATGATTTACTTTTCT
1 GAAAATGAGTTACTTTTCT
26517134 G
1 G
26517135 GTGTTTGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (19 bp):
GAAAATGAGTTACTTTTCT
Found at i:26520956 original size:6 final size:6
Alignment explanation
Indices: 26520922--26520959 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
26520912 GGGACGCAAT
* *
26520922 GAAGG- GAAGGG GAAGGG GAAGGA GAAGGA GAAGGA GAA
1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAA
26520960 AGCGTTTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (6 bp):
GAAGGA
Found at i:26523707 original size:14 final size:14
Alignment explanation
Indices: 26523688--26523714 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26523678 ATCCCTATAG
26523688 ATGATATTGTTGAT
1 ATGATATTGTTGAT
26523702 ATGATATTGTTGA
1 ATGATATTGTTGA
26523715 GACAGTAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (14 bp):
ATGATATTGTTGAT
Found at i:26529440 original size:30 final size:28
Alignment explanation
Indices: 26529406--26529469 Score: 85
Period size: 31 Copynumber: 2.2 Consensus size: 28
26529396 GCATTAAGCC
26529406 TAATTTTTAT-TATGTTTTAGAAAATTTTAA
1 TAATTTTTATATAT-TTTTA-AAAATTTT-A
26529436 TAATTTTTTATATATTTTTAAAAATTTTA
1 TAA-TTTTTATATATTTTTAAAAATTTTA
26529465 TAATT
1 TAATT
26529470 AATAAAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
28 2 0.06
29 4 0.12
30 11 0.34
31 12 0.38
32 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (28 bp):
TAATTTTTATATATTTTTAAAAATTTTA
Found at i:26529444 original size:21 final size:21
Alignment explanation
Indices: 26529420--26529463 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
26529410 TTTTATTATG
*
26529420 TTTTAGAAAATTTTAATAATT
1 TTTTAGAAAATTTTAAAAATT
* * *
26529441 TTTTATATATTTTTAAAAATT
1 TTTTAGAAAATTTTAAAAATT
26529462 TT
1 TT
26529464 ATAATTAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTAGAAAATTTTAAAAATT
Found at i:26529942 original size:17 final size:17
Alignment explanation
Indices: 26529917--26529950 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26529907 TTAATTTAAT
26529917 TTTTAAAAATTTTATAA
1 TTTTAAAAATTTTATAA
*
26529934 TTTTGAAAATTTTATAA
1 TTTTAAAAATTTTATAA
26529951 GATAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTTAAAAATTTTATAA
Found at i:26536059 original size:25 final size:26
Alignment explanation
Indices: 26535995--26536088 Score: 68
Period size: 25 Copynumber: 3.7 Consensus size: 26
26535985 AGATAACACT
* *
26535995 CCACAAAGGC-TTCTAGAAAGAATTAA
1 CCACAAAGGCTTTCCA-AAAGAATTCA
* * **
26536021 CCATAGAGTATTTCCAAAAG-ATTCA
1 CCACAAAGGCTTTCCAAAAGAATTCA
* * **
26536046 CCACAAAGGCTTT-CTAGAGAATTTT
1 CCACAAAGGCTTTCCAAAAGAATTCA
26536071 CCACAAAGGCTTTCCAAA
1 CCACAAAGGCTTTCCAAA
26536089 GAAATATGTG
Statistics
Matches: 49, Mismatches: 16, Indels: 6
0.69 0.23 0.08
Matches are distributed among these distances:
24 4 0.08
25 29 0.59
26 12 0.24
27 4 0.08
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.24
Consensus pattern (26 bp):
CCACAAAGGCTTTCCAAAAGAATTCA
Found at i:26541190 original size:16 final size:16
Alignment explanation
Indices: 26541169--26541199 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26541159 AATTAATTTT
*
26541169 AATTAATTAGTTTTCC
1 AATTAAATAGTTTTCC
26541185 AATTAAATAGTTTTC
1 AATTAAATAGTTTTC
26541200 TTAACCCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.48
Consensus pattern (16 bp):
AATTAAATAGTTTTCC
Found at i:26545020 original size:6 final size:6
Alignment explanation
Indices: 26545004--26545048 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
26544994 TTAGAACATG
* * *
26545004 AAAAAT GAAAAT AAAAAT -AAAAT AAAAAT AAAAAC AAAAAC AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
26545049 GGGAAAGCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
5 5 0.14
6 30 0.86
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.11
Consensus pattern (6 bp):
AAAAAT
Found at i:26545025 original size:11 final size:11
Alignment explanation
Indices: 26545004--26545036 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
26544994 TTAGAACATG
26545004 AAAAATGAAAAT
1 AAAAAT-AAAAT
26545016 AAAAATAAAAT
1 AAAAATAAAAT
26545027 AAAAATAAAA
1 AAAAATAAAA
26545037 ACAAAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:26545048 original size:17 final size:17
Alignment explanation
Indices: 26545005--26545042 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26544995 TAGAACATGA
* *
26545005 AAAATGAAAATAAAAAT
1 AAAATAAAAATAAAAAC
26545022 AAAATAAAAATAAAAAC
1 AAAATAAAAATAAAAAC
26545039 AAAA
1 AAAA
26545043 ACAAAAGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (17 bp):
AAAATAAAAATAAAAAC
Found at i:26553541 original size:64 final size:64
Alignment explanation
Indices: 26553415--26553534 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 64
26553405 CCCACACCTA
* * * * *
26553415 TTTGCGATCGGAGAAGACAACTGATGAGCGAGATTCTCGAAGCCAACAAGTCAACCCAAAACTG
1 TTTGCGATCGGAGAAGACAACTGAGGAGAGAGATTCCCAAAGCCAACAAGTCAAACCAAAACTG
26553479 TTTGCGATCGGAGAAGACAA-TAGAGGAGTAGA-ATTCCCAAAGCCAACAAGTCAAAC
1 TTTGCGATCGGAGAAGACAACT-GAGGAG-AGAGATTCCCAAAGCCAACAAGTCAAAC
26553535 TGAAACTTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
63 1 0.02
64 46 0.94
65 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (64 bp):
TTTGCGATCGGAGAAGACAACTGAGGAGAGAGATTCCCAAAGCCAACAAGTCAAACCAAAACTG
Found at i:26553679 original size:20 final size:19
Alignment explanation
Indices: 26553640--26553685 Score: 74
Period size: 21 Copynumber: 2.3 Consensus size: 19
26553630 ACCCAAAATG
26553640 AAATAAAATAACAATAAAA
1 AAATAAAATAACAATAAAA
26553659 AAATAAATATAACCAATAAAA
1 AAATAAA-ATAA-CAATAAAA
26553680 AAATAA
1 AAATAA
26553686 TTACTCACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 7 0.28
20 4 0.16
21 14 0.56
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (19 bp):
AAATAAAATAACAATAAAA
Found at i:26554991 original size:16 final size:17
Alignment explanation
Indices: 26554972--26555010 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
26554962 CTTTATTCAC
26554972 TTAATAT-ATTATAATA
1 TTAATATAATTATAATA
26554988 TTAATATAATTATAATA
1 TTAATATAATTATAATA
26555005 -TAATAT
1 TTAATAT
26555011 TATTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAATATAATTATAATA
Found at i:26564061 original size:246 final size:246
Alignment explanation
Indices: 26563627--26564118 Score: 948
Period size: 246 Copynumber: 2.0 Consensus size: 246
26563617 TTTTCTCCGC
26563627 ACTACGGGCTGACGCTTTCGTCTATGGCCCTTAAAAAGTAAGCTTTTCAGCATATGCAAAGGCGG
1 ACTACGGGCTGACGCTTTCGTCTATGGCCCTTAAAAAGTAAGCTTTTCAGCATATGCAAAGGCGG
26563692 CCGCTTTGTATGTTTTGGAAGGATTGCATAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCG
66 CCGCTTTGTATGTTTTGGAAGGATTGCATAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCG
26563757 AGCCAAAGAGACAAAATGGCGTGGGATTCGCCATTAAGAAGCGTTGATCTTGCATAGATTACTGG
131 AGCCAAAGAGACAAAATGGCGTGGGATTCGCCATTAAGAAGCGTTGATCTTGCATAGATTACTGG
* *
26563822 CTAGAGTCAGGTTCCCTAAAAATCGTAAGTCTAATCTTTGGAGTTGGTGGT
196 CTAGAGTCAGGTTCCCTAAAAATCGTAAGTCTAATCTTTAGAGCTGGTGGT
26563873 ACTACGGGCTGACGCTTTCGTCTATGGCCCTTAAAAAGTAAGCTTTTCAGCATATGCAAAGGCGG
1 ACTACGGGCTGACGCTTTCGTCTATGGCCCTTAAAAAGTAAGCTTTTCAGCATATGCAAAGGCGG
26563938 CCGCTTTGTATGTTTTGGAAGGATTGCATAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCG
66 CCGCTTTGTATGTTTTGGAAGGATTGCATAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCG
*
26564003 AGCCAAAGAGACAAAATGGCGTGGGATTCGCCATTGAGAAGCGTTGATCTTGCATAGATTACTGG
131 AGCCAAAGAGACAAAATGGCGTGGGATTCGCCATTAAGAAGCGTTGATCTTGCATAGATTACTGG
*
26564068 CTAGAGTCAGGTTCCTTAAAAATCGTAAGTCTAATCTTTAGAGCTGGTGGT
196 CTAGAGTCAGGTTCCCTAAAAATCGTAAGTCTAATCTTTAGAGCTGGTGGT
26564119 CGTAGGCGTC
Statistics
Matches: 242, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
246 242 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (246 bp):
ACTACGGGCTGACGCTTTCGTCTATGGCCCTTAAAAAGTAAGCTTTTCAGCATATGCAAAGGCGG
CCGCTTTGTATGTTTTGGAAGGATTGCATAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCG
AGCCAAAGAGACAAAATGGCGTGGGATTCGCCATTAAGAAGCGTTGATCTTGCATAGATTACTGG
CTAGAGTCAGGTTCCCTAAAAATCGTAAGTCTAATCTTTAGAGCTGGTGGT
Found at i:26571085 original size:118 final size:118
Alignment explanation
Indices: 26570877--26571112 Score: 373
Period size: 118 Copynumber: 2.0 Consensus size: 118
26570867 TGTTTTCCAT
* *
26570877 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGCGCTTAGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGCGCTTAGGTTGTCATT
*
26570942 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
** * *
26570995 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGCGCTTAGGTTGTCATT
****
26571060 CTACTTCGCGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTAACCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
26571113 AAATAAATAA
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
118 107 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGCGCTTAGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
Found at i:26580019 original size:29 final size:29
Alignment explanation
Indices: 26579987--26580060 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
26579977 AATTGATTCA
*
26579987 GGCC-AGATGGGCCATATGAATGTGATTTG
1 GGCCTAGATGGGCCATATGAATGAGA-TTG
26580016 GGCCTA-ATGGGCCATATGAATGAGATTG
1 GGCCTAGATGGGCCATATGAATGAGATTG
*
26580044 GGCCTAG-TGGGCTATAT
1 GGCCTAGATGGGCCATAT
26580061 ATATGTATGT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
28 18 0.44
29 22 0.54
30 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (29 bp):
GGCCTAGATGGGCCATATGAATGAGATTG
Found at i:26580054 original size:28 final size:29
Alignment explanation
Indices: 26579993--26580060 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 29
26579983 TTCAGGCCAG
*
26579993 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
26580022 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
* *
26580050 GTGGGCTATAT
1 ATGGGCCATAT
26580061 ATATGTATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
28 18 0.50
29 18 0.50
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.29
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:26584991 original size:11 final size:11
Alignment explanation
Indices: 26584974--26585011 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
26584964 CAATAACAAT
26584974 AAAATAATAGC
1 AAAATAATAGC
* *
26584985 AATATAATAGA
1 AAAATAATAGC
26584996 AAAATAATAGC
1 AAAATAATAGC
26585007 AAAAT
1 AAAAT
26585012 GGCAACAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.21
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:26595574 original size:29 final size:30
Alignment explanation
Indices: 26595520--26595577 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 30
26595510 TTAAATATTT
26595520 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAATTTAATATT-AAGTGATTATCTTAA
*
26595551 TATTAAATTTAAT-TT-AGTGTTTATCTT
1 TATT-AATTTAATATTAAGTGATTATCTT
26595578 GTGGATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 11 0.44
31 6 0.24
32 8 0.32
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.53
Consensus pattern (30 bp):
TATTAATTTAATATTAAGTGATTATCTTAA
Found at i:26595637 original size:18 final size:17
Alignment explanation
Indices: 26595614--26595647 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
26595604 AAGATTTAAT
26595614 ATTAAATTTAAATATTAG
1 ATTAAATTT-AATATTAG
26595632 ATTAAATTTAATATTA
1 ATTAAATTTAATATTA
26595648 AAGTGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
ATTAAATTTAATATTAG
Found at i:26600499 original size:9 final size:9
Alignment explanation
Indices: 26600485--26600513 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
26600475 GCTTCTACTC
26600485 TTTTTTCTT
1 TTTTTTCTT
26600494 TTTTTTCTT
1 TTTTTTCTT
26600503 TTTTTT-TT
1 TTTTTTCTT
26600511 TTT
1 TTT
26600514 GGGGGGGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:26600504 original size:16 final size:15
Alignment explanation
Indices: 26600483--26600513 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
26600473 TAGCTTCTAC
26600483 TCTTTTTTCTTTTTTT
1 TCTTTTTT-TTTTTTT
26600499 TCTTTTTTTTTTTTT
1 TCTTTTTTTTTTTTT
26600514 GGGGGGGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TCTTTTTTTTTTTTT
Found at i:26602463 original size:2 final size:2
Alignment explanation
Indices: 26602452--26602481 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
26602442 TTGCTTGCAG
26602452 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26602482 CAACATGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26602542 original size:20 final size:20
Alignment explanation
Indices: 26602496--26602535 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26602486 ATGATGAGTT
*
26602496 AAAAAATAATATTTTTTTAA
1 AAAAAATAATATTATTTTAA
*
26602516 AAAAAATTATATTATTTTAA
1 AAAAAATAATATTATTTTAA
26602536 TTAAAATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAAAATAATATTATTTTAA
Found at i:26603410 original size:2 final size:2
Alignment explanation
Indices: 26603403--26603442 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
26603393 ATAATTTAAC
26603403 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26603443 TCATTCTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26607985 original size:37 final size:36
Alignment explanation
Indices: 26607902--26608082 Score: 107
Period size: 37 Copynumber: 5.0 Consensus size: 36
26607892 GGAGCTATAC
* * * * * * *
26607902 CTGAGGAGGTGTAAGCTCAAAACTTATTGAGTAGAA
1 CTGAGAAGGTATAAACTCAAAATTTAGTGAGTTGTA
* *
26607938 TCTGAAAAGGTATAAACTCAAAATTTAGTGAGTTATA
1 -CTGAGAAGGTATAAACTCAAAATTTAGTGAGTTGTA
* * **
26607975 CTAGAGAAGGTATGAGCTCAATTTTTAAG-GAGTTGTA
1 CT-GAGAAGGTATAAACTCAAAATTT-AGTGAGTTGTA
* * * * *
26608012 CT-TG-AGGTGTAAACTAAAAAACTTAGTGAGATGTA
1 CTGAGAAGGTATAAACT-CAAAATTTAGTGAGTTGTA
* * * *
26608047 CTGAGAAGGTGTGAACTCAAAATTTAGGGACTTGTA
1 CTGAGAAGGTATAAACTCAAAATTTAGTGAGTTGTA
26608083 TTTGGGAAGG
Statistics
Matches: 107, Mismatches: 31, Indels: 13
0.71 0.21 0.09
Matches are distributed among these distances:
34 10 0.09
35 14 0.13
36 17 0.16
37 64 0.60
38 2 0.02
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.29
Consensus pattern (36 bp):
CTGAGAAGGTATAAACTCAAAATTTAGTGAGTTGTA
Found at i:26608177 original size:37 final size:34
Alignment explanation
Indices: 26608127--26608214 Score: 106
Period size: 34 Copynumber: 2.5 Consensus size: 34
26608117 ATACCAAGGA
* *
26608127 AGATGTAAGCTCAAAACTTAGTAAGTTGTGCCTTAG-T
1 AGATGTAAGCTCAAAA-TT-G-AAGTTGTACC-TAGAG
*
26608164 AGATGTAAGCTCAAAATTGGAGTTGTACCTAGAG
1 AGATGTAAGCTCAAAATTGAAGTTGTACCTAGAG
26608198 AGATGTAAGCTCAAAAT
1 AGATGTAAGCTCAAAAT
26608215 CTAATGAGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
33 3 0.06
34 25 0.53
35 1 0.02
36 2 0.04
37 16 0.34
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (34 bp):
AGATGTAAGCTCAAAATTGAAGTTGTACCTAGAG
Found at i:26608202 original size:34 final size:36
Alignment explanation
Indices: 26608127--26608296 Score: 113
Period size: 37 Copynumber: 4.8 Consensus size: 36
26608117 ATACCAAGGA
* *
26608127 AGATGTAAGCTCAAAACTTAGTAAGTTGTGCCTTAGT
1 AGATGTAAGCTCAAAA-TTAGTAAGTTGTACCTTAGG
*
26608164 AGATGTAAGCTCAAAATT-G-GAGTTGTACC-TAGAG
1 AGATGTAAGCTCAAAATTAGTAAGTTGTACCTTAG-G
* * * *
26608198 AGATGTAAGCTCAAAATCTAATGAGTTGTACACTGA-A
1 AGATGTAAGCTCAAAAT-TAGTAAGTTGTAC-CTTAGG
* * *
26608235 AAATGTAAACTCAAAATTTACTGAA-TTGTACC-TAGG
1 AGATGTAAGCTCAAAA-TTAGT-AAGTTGTACCTTAGG
* *
26608271 AGGGTGTAAGCTTAAAATT--TAAGTTG
1 A-GATGTAAGCTCAAAATTAGTAAGTTG
26608297 ATATAAGCTT
Statistics
Matches: 106, Mismatches: 16, Indels: 25
0.72 0.11 0.17
Matches are distributed among these distances:
33 5 0.05
34 29 0.27
35 3 0.03
36 6 0.06
37 59 0.56
38 3 0.03
39 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (36 bp):
AGATGTAAGCTCAAAATTAGTAAGTTGTACCTTAGG
Found at i:26608322 original size:23 final size:23
Alignment explanation
Indices: 26608277--26608324 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
26608267 TAGGAGGGTG
* *
26608277 TAAGCTTAAAATTTAAGTTGATA
1 TAAGCTTAAAACTTAAGTAGATA
26608300 TAAGCTTAAAACTTAA-TGAGATA
1 TAAGCTTAAAACTTAAGT-AGATA
26608323 TA
1 TA
26608325 CTTGAAAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.35
Consensus pattern (23 bp):
TAAGCTTAAAACTTAAGTAGATA
Found at i:26611711 original size:95 final size:95
Alignment explanation
Indices: 26611522--26611716 Score: 234
Period size: 95 Copynumber: 2.0 Consensus size: 95
26611512 GTAAACTTCT
* *
26611522 AAAACTCTTTCACATGTTAGTGGTGTTTTAAGGAGGTATATAAATATTTTTTAAAATTTTTAATT
1 AAAAC-CTCTCACATGTTAGTGGTGTTTTAAGGAGGCATATAAATATTTTTTAAAATTTTTAATT
* *
26611587 TTAATTTTTTAGCATTTAAAATTATTTTTTA
65 TTAATTTTTTACCATATAAAATTATTTTTTA
* ** *
26611618 AAAACCTCTCACAT-TTCAGTGGTTTTTTAAGGAGGCATATAAATATTTTTT-ATTTTATTTTAT
1 AAAACCTCTCACATGTT-AGTGGTGTTTTAAGGAGGCATATAAATATTTTTTAAAATT-TTTAAT
* *
26611681 GTTT-TTTTATTTACCATATAAAATTATTTTTGA
64 -TTTAATTT-TTTACCATATAAAATTATTTTTTA
26611714 AAA
1 AAA
26611717 TCTCTAAAGC
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
94 5 0.06
95 48 0.56
96 32 0.38
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (95 bp):
AAAACCTCTCACATGTTAGTGGTGTTTTAAGGAGGCATATAAATATTTTTTAAAATTTTTAATTT
TAATTTTTTACCATATAAAATTATTTTTTA
Found at i:26613894 original size:38 final size:38
Alignment explanation
Indices: 26613852--26613931 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
26613842 CAGGGAATTT
26613852 GTTAGTGCAAAAAGGGGATGGATTAGTTTAAGCTTTTG
1 GTTAGTGCAAAAAGGGGATGGATTAGTTTAAGCTTTTG
26613890 GTTAGTGCAAAAAGGGGATGGATTAGTTTAAGCTTTTG
1 GTTAGTGCAAAAAGGGGATGGATTAGTTTAAGCTTTTG
26613928 GTTA
1 GTTA
26613932 CCTTAGAGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.29, C:0.05, G:0.31, T:0.35
Consensus pattern (38 bp):
GTTAGTGCAAAAAGGGGATGGATTAGTTTAAGCTTTTG
Found at i:26625081 original size:13 final size:12
Alignment explanation
Indices: 26625032--26625081 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
26625022 TCCTTCTGCT
26625032 TCATCACATTCCA
1 TCATC-CATTCCA
26625045 T-ATCCATGT-CA
1 TCATCCAT-TCCA
26625056 TCATCCATTCCA
1 TCATCCATTCCA
*
26625068 TCTTCCATTTCCA
1 TCATCCA-TTCCA
26625081 T
1 T
26625082 ACTCTCATCC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
11 7 0.22
12 18 0.56
13 7 0.22
ACGTcount: A:0.24, C:0.36, G:0.02, T:0.38
Consensus pattern (12 bp):
TCATCCATTCCA
Found at i:26629359 original size:31 final size:31
Alignment explanation
Indices: 26629323--26629437 Score: 124
Period size: 32 Copynumber: 3.6 Consensus size: 31
26629313 TTTTTAAAGA
*
26629323 AATATTTTTATCATTTAACAAAATTAAAGTT
1 AATATTTTTATCATTTCACAAAATTAAAGTT
*
26629354 AATATTCTTATCATTTCACAAAATTAAAGTTGT
1 AATATTTTTATCATTTCACAAAATTAAAG-T-T
* * * *
26629387 AAT-TTGTTACCATTTCACAAAATGAAAGGT
1 AATATTTTTATCATTTCACAAAATTAAAGTT
* *
26629417 GATATTTGTTATCAATTCACA
1 AATATTT-TTATCATTTCACA
26629438 GAACCGCGCA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
30 3 0.04
31 29 0.41
32 34 0.49
33 4 0.06
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (31 bp):
AATATTTTTATCATTTCACAAAATTAAAGTT
Found at i:26631698 original size:18 final size:19
Alignment explanation
Indices: 26631654--26631708 Score: 53
Period size: 18 Copynumber: 2.9 Consensus size: 19
26631644 ATATATCACC
26631654 TCAACAAATAATTTAAAAAT
1 TCAA-AAATAATTTAAAAAT
*
26631674 T-ATAAAAT-ATTTTAAAAT
1 TCA-AAAATAATTTAAAAAT
*
26631692 TCAAAAA-AATATAAAAA
1 TCAAAAATAATTTAAAAA
26631709 AAGTTGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
18 21 0.72
19 6 0.21
20 2 0.07
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
TCAAAAATAATTTAAAAAT
Found at i:26631930 original size:54 final size:56
Alignment explanation
Indices: 26631871--26631977 Score: 173
Period size: 57 Copynumber: 1.9 Consensus size: 56
26631861 TAGGGTCAAC
26631871 TTTTTAAC-T-CAATAAGTATAAAATTGACAAAAATTATAAACATTAAGAGCCAAT
1 TTTTTAACTTACAATAAGTATAAAATTGACAAAAATTATAAACATTAAGAGCCAAT
* *
26631925 TTTTTAACTTAAGAATAAGTATCAAATTGACAAAAATTATAAACATTAAGAGC
1 TTTTTAACTT-ACAATAAGTATAAAATTGACAAAAATTATAAACATTAAGAGC
26631978 TTAATTTATC
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
54 8 0.17
55 1 0.02
57 39 0.81
ACGTcount: A:0.50, C:0.10, G:0.08, T:0.32
Consensus pattern (56 bp):
TTTTTAACTTACAATAAGTATAAAATTGACAAAAATTATAAACATTAAGAGCCAAT
Found at i:26642131 original size:19 final size:19
Alignment explanation
Indices: 26642085--26642132 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
26642075 GTATATATTT
*
26642085 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
* *
26642103 CAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAGGAAGA
26642122 TAAATTTTATT
1 TAAATTTTATT
26642133 CATATTCTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:26642193 original size:43 final size:43
Alignment explanation
Indices: 26642146--26642236 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 43
26642136 ATTCTAGGAA
**
26642146 TATTTTTATTTTATCATTTAGTAGTTTATTAGAATAAGGAAAC
1 TATTTTTACCTTATCATTTAGTAGTTTATTAGAATAAGGAAAC
* ** *
26642189 TA-TTTTCCCTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTTACCTTATCATTTAGTAGTTTATTAGAATAAGGAAAC
26642231 TATTTT
1 TATTTT
26642237 CCCAATTAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 36 0.88
43 5 0.12
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.49
Consensus pattern (43 bp):
TATTTTTACCTTATCATTTAGTAGTTTATTAGAATAAGGAAAC
Found at i:26651401 original size:11 final size:11
Alignment explanation
Indices: 26651354--26651417 Score: 51
Period size: 11 Copynumber: 5.7 Consensus size: 11
26651344 ATTAGATAAA
26651354 TATTATTTTAT
1 TATTATTTTAT
*
26651365 TAATATTTTAT
1 TATTATTTTAT
* * *
26651376 GA-GATATTTAA
1 TATTAT-TTTAT
26651387 TATTATTTTAT
1 TATTATTTTAT
26651398 TATT-TTATTAT
1 TATTATT-TTAT
26651409 TATTTATTT
1 TA-TTATTT
26651418 AGTATATAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
10 4 0.10
11 30 0.73
12 5 0.12
13 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:26651404 original size:19 final size:19
Alignment explanation
Indices: 26651354--26651413 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 19
26651344 ATTAGATAAA
*
26651354 TATTATTTTATTAATATTT
1 TATTATTTTATTATTATTT
* *
26651373 TATGAGATATTTAATATTATTT
1 TAT--TAT-TTTATTATTATTT
26651395 TATTATTTTATTATTATTT
1 TATTATTTTATTATTATTT
26651414 ATTTAGTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
19 15 0.45
20 2 0.06
21 2 0.06
22 14 0.42
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
TATTATTTTATTATTATTT
Found at i:26653617 original size:46 final size:46
Alignment explanation
Indices: 26653550--26653731 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
26653540 AGTGTGCTCT
*
26653550 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
26653596 CTGATATGAAATGTGTAAGACCATGGTTAAAAGATACTATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
26653642 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
26653688 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
26653732 TCATGTCAAA
Statistics
Matches: 120, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.01
46 119 0.99
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26653708 original size:92 final size:92
Alignment explanation
Indices: 26653551--26653731 Score: 265
Period size: 92 Copynumber: 2.0 Consensus size: 92
26653541 GTGTGCTCTC
*** * * *
26653551 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGA
* *
26653616 CCATGGTTAAAAGATACTATGGCAACG
66 CCATAGTTAAAAGACACTATGGCAACG
26653643 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAG
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAG
*
26653707 ACCATAGTTGAAAGACACTATGGCA
65 ACCATAGTTAAAAGACACTATGGCA
26653732 TCATGTCAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
91 1 0.01
92 78 0.99
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (92 bp):
TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGA
CCATAGTTAAAAGACACTATGGCAACG
Found at i:26661256 original size:25 final size:25
Alignment explanation
Indices: 26661222--26661272 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
26661212 AGCATCAACA
26661222 TACCCAATGACTCCATCTCTAGTTC
1 TACCCAATGACTCCATCTCTAGTTC
26661247 TACCCAATGACTCCATCTCTAGTTC
1 TACCCAATGACTCCATCTCTAGTTC
26661272 T
1 T
26661273 TCCAAACTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.35, G:0.08, T:0.33
Consensus pattern (25 bp):
TACCCAATGACTCCATCTCTAGTTC
Found at i:26666481 original size:23 final size:23
Alignment explanation
Indices: 26666432--26666481 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
26666422 TTTTTTTTTG
** * *
26666432 AGTTAACTCAAATAAGTGTTTCG
1 AGTTAACTCAAATAAGTAATACA
*
26666455 AGTTAACTCAGATAAGTAATACA
1 AGTTAACTCAAATAAGTAATACA
26666478 AGTT
1 AGTT
26666482 TTGAGTTCGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (23 bp):
AGTTAACTCAAATAAGTAATACA
Found at i:26666657 original size:19 final size:20
Alignment explanation
Indices: 26666631--26666671 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26666621 TAAAATTTAC
*
26666631 ATTTTTTAAAAAGTATAAAA
1 ATTTTTAAAAAAGTATAAAA
*
26666651 ATTTTTAAAAAATTATAAAA
1 ATTTTTAAAAAAGTATAAAA
26666671 A
1 A
26666672 ATATATAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
ATTTTTAAAAAAGTATAAAA
Found at i:26666672 original size:10 final size:10
Alignment explanation
Indices: 26666638--26666680 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
26666628 TACATTTTTT
*
26666638 AAAAAGTATA
1 AAAAATTATA
* *
26666648 AAAATTTTTA
1 AAAAATTATA
26666658 AAAAATTATA
1 AAAAATTATA
26666668 AAAAATATATA
1 AAAAAT-TATA
26666679 AA
1 AA
26666681 GAGAGTAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
10 21 0.78
11 6 0.22
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (10 bp):
AAAAATTATA
Found at i:26673074 original size:30 final size:31
Alignment explanation
Indices: 26673007--26673078 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 31
26672997 CAAATTAATC
*
26673007 TTTAAACTTAACAATTGTTCCTATATTGAGA
1 TTTAAACTTAACAATTGTTCCTATACTGAGA
* * * *
26673038 TCTAAACTTGAGAATTGTT-CTATGCTGAGA
1 TTTAAACTTAACAATTGTTCCTATACTGAGA
26673068 TTTAAACTTAA
1 TTTAAACTTAA
26673079 AGATTTTCAA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
30 18 0.53
31 16 0.47
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (31 bp):
TTTAAACTTAACAATTGTTCCTATACTGAGA
Found at i:26675620 original size:23 final size:21
Alignment explanation
Indices: 26675585--26675637 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
26675575 CACATGACCA
*
26675585 TAAAACAT-AAATAAAAAATAT
1 TAAAAAATAAAAT-AAAAATAT
26675606 TAACAAAATAAAATAAAAATAT
1 TAA-AAAATAAAATAAAAATAT
*
26675628 TTAAAAATAA
1 TAAAAAATAA
26675638 TGTCAAGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 10 0.36
22 14 0.50
23 4 0.14
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAAAAATAAAATAAAAATAT
Found at i:26691026 original size:6 final size:6
Alignment explanation
Indices: 26691007--26691037 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
26690997 TATAATTAAA
26691007 AATATT AA-ATT AATATT AATATT AATATT AA
1 AATATT AATATT AATATT AATATT AATATT AA
26691038 AAAAATTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (6 bp):
AATATT
Found at i:26691812 original size:9 final size:9
Alignment explanation
Indices: 26691798--26691833 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
26691788 CTTAATTATA
26691798 TATAAAAAT
1 TATAAAAAT
*
26691807 TATAAAAAA
1 TATAAAAAT
26691816 TATAGAAAAT
1 TATA-AAAAT
26691826 TATAAAAA
1 TATAAAAA
26691834 AATATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (9 bp):
TATAAAAAT
Found at i:26691816 original size:10 final size:10
Alignment explanation
Indices: 26691796--26691846 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
26691786 ACCTTAATTA
26691796 TATATAAAAAT
1 TATA-AAAAAT
26691807 TATAAAAAA-
1 TATAAAAAAT
*
26691816 TATAGAAAAT
1 TATAAAAAAT
*
26691826 TATAAAAAAA
1 TATAAAAAAT
*
26691836 TATATAAAAT
1 TATAAAAAAT
26691846 T
1 T
26691847 TTATCAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 8 0.24
10 22 0.65
11 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (10 bp):
TATAAAAAAT
Found at i:26691845 original size:20 final size:19
Alignment explanation
Indices: 26691795--26691846 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 19
26691785 GACCTTAATT
26691795 ATATATAAAAATTATAAAAA
1 ATATAT-AAAATTATAAAAA
*
26691815 ATATAGAAAATTATAAAAAA
1 ATATATAAAATTAT-AAAAA
26691835 ATATATAAAATT
1 ATATATAAAATT
26691847 TTATCAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 8 0.28
20 21 0.72
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
ATATATAAAATTATAAAAA
Found at i:26693937 original size:19 final size:19
Alignment explanation
Indices: 26693911--26693997 Score: 62
Period size: 18 Copynumber: 4.8 Consensus size: 19
26693901 TTAAAATAAA
26693911 ATTA-ATATATTAAATTAT
1 ATTATATATATTAAATTAT
* *
26693929 ATTATATATATT-TACT-T
1 ATTATATATATTAAATTAT
* *
26693946 ATTATTTA-AGT-AATTATT
1 ATTATATATATTAAATTA-T
*
26693964 ATTATAT-TATTATATTAT
1 ATTATATATATTAAATTAT
26693982 ATTAGTATA-ATTAAAT
1 ATTA-TATATATTAAAT
26693998 AAATGAATAA
Statistics
Matches: 52, Mismatches: 10, Indels: 13
0.69 0.13 0.17
Matches are distributed among these distances:
16 4 0.08
17 8 0.15
18 20 0.38
19 20 0.38
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (19 bp):
ATTATATATATTAAATTAT
Found at i:26694039 original size:13 final size:12
Alignment explanation
Indices: 26693998--26694056 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
26693988 ATAATTAAAT
*
26693998 AAATG-AATAAA
1 AAATGAAATAGA
*
26694009 AAAT-AAATAAA
1 AAATGAAATAGA
26694020 GAAATGAGAATAGA
1 -AAATGA-AATAGA
26694034 AAATGAAATAGA
1 AAATGAAATAGA
26694046 AAA-G-AATAGA
1 AAATGAAATAGA
26694056 A
1 A
26694057 TAGAAACGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
10 7 0.16
11 11 0.26
12 13 0.30
13 7 0.16
14 5 0.12
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (12 bp):
AAATGAAATAGA
Found at i:26694060 original size:15 final size:15
Alignment explanation
Indices: 26694040--26694109 Score: 56
Period size: 15 Copynumber: 4.8 Consensus size: 15
26694030 TAGAAAATGA
26694040 AATAGAAAAGAATAG
1 AATAGAAAAGAATAG
*
26694055 AATAGAAACGAATAG
1 AATAGAAAAGAATAG
* * * *
26694070 GAGAGAAAAAAAGGAG
1 AATAGAAAAGAA-TAG
*
26694086 AAAAGAAAA-AA-AG
1 AATAGAAAAGAATAG
26694099 AA-AGAAAAGAA
1 AATAGAAAAGAA
26694110 GGAGAAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
12 6 0.13
13 6 0.13
15 24 0.53
16 9 0.20
ACGTcount: A:0.70, C:0.01, G:0.23, T:0.06
Consensus pattern (15 bp):
AATAGAAAAGAATAG
Found at i:26694094 original size:16 final size:17
Alignment explanation
Indices: 26694073--26694109 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
26694063 CGAATAGGAG
*
26694073 AGAAAAAAAG-GAGAAA
1 AGAAAAAAAGAAAGAAA
26694089 AGAAAAAAAGAAAGAAA
1 AGAAAAAAAGAAAGAAA
26694106 AGAA
1 AGAA
26694110 GGAGAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAAAAAAGAAAGAAA
Found at i:26695678 original size:126 final size:125
Alignment explanation
Indices: 26695521--26695750 Score: 381
Period size: 126 Copynumber: 1.8 Consensus size: 125
26695511 TAGCTTTAAG
*
26695521 AGGATATTCGAATATTCAAGACAAACAAAGAAAGCAAAACCCAGTACATTAGGGCACGATCCTTT
1 AGGATATTCGAATATTCAAAACAAACAAAGAAAGCAAAACCCAGTACATTAGGGCACGATCCTTT
*
26695586 GAATTCTTTAAATACCGAACATTACCTTTATTTTGAAAAATTTTGAGAGTGAACCGGTAAA
66 GAATTCTTTAAATACCGAACATTACCATTATTTT-AAAAATTTTGAGAGTGAACCGGTAAA
* * *
26695647 AGGATATTCTG-ATATTCAAAACAAACAAAGAAAGCGAAACTCAGTACATTAGGGCATGATCCTT
1 AGGATATTC-GAATATTCAAAACAAACAAAGAAAGCAAAACCCAGTACATTAGGGCACGATCCTT
*
26695711 TGAATTCTTTAAATACCGAACATTGCCATTATTTTAAAAA
65 TGAATTCTTTAAATACCGAACATTACCATTATTTTAAAAA
26695751 CAATTGAGAA
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
125 5 0.05
126 91 0.94
127 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (125 bp):
AGGATATTCGAATATTCAAAACAAACAAAGAAAGCAAAACCCAGTACATTAGGGCACGATCCTTT
GAATTCTTTAAATACCGAACATTACCATTATTTTAAAAATTTTGAGAGTGAACCGGTAAA
Found at i:26696400 original size:20 final size:21
Alignment explanation
Indices: 26696375--26696415 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
26696365 ACGAACTATT
*
26696375 ATAATAGTAG-AATATAATAA
1 ATAATAGTAGTAATAAAATAA
*
26696395 ATAATATTAGTAATAAAATAA
1 ATAATAGTAGTAATAAAATAA
26696416 TATTAACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
ATAATAGTAGTAATAAAATAA
Found at i:26696408 original size:16 final size:17
Alignment explanation
Indices: 26696389--26696420 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26696379 TAGTAGAATA
26696389 TAAT-AAATAATATTAG
1 TAATAAAATAATATTAG
26696405 TAATAAAATAATATTA
1 TAATAAAATAATATTA
26696421 ACTATTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAAAATAATATTAG
Found at i:26696463 original size:15 final size:15
Alignment explanation
Indices: 26696438--26696480 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
26696428 ACAGTAAAGT
*
26696438 ATAAT-AAAATAGTA
1 ATAATAAAAATAATA
26696452 ATAATAAAAATAATA
1 ATAATAAAAATAATA
*
26696467 ATACTAAAAATAAT
1 ATAATAAAAATAAT
26696481 CAATTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (15 bp):
ATAATAAAAATAATA
Found at i:26697512 original size:17 final size:15
Alignment explanation
Indices: 26697479--26697514 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
26697469 TAGGTTTAGG
26697479 TGGGTTTTGGGGTAT
1 TGGGTTTTGGGGTAT
26697494 TGGGTTATTGGGTGTAT
1 TGGGTT-TTGGG-GTAT
26697511 TGGG
1 TGGG
26697515 CTTAGAGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 5 0.26
17 8 0.42
ACGTcount: A:0.08, C:0.00, G:0.47, T:0.44
Consensus pattern (15 bp):
TGGGTTTTGGGGTAT
Found at i:26697900 original size:85 final size:85
Alignment explanation
Indices: 26697804--26698272 Score: 728
Period size: 85 Copynumber: 5.5 Consensus size: 85
26697794 GTGAAGATAA
*
26697804 GATCTGT-AATTTTAACCTGTTATCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGACCTGCTCC
1 GATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGACCTGCTCC
26697868 ACCACTGCTCGGAGAGCCAG
66 ACCACTGCTCGGAGAGCCAG
* * * *
26697888 GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGAGGGTTAAGGCGGGTCTTTGACCTGCTCT
1 GATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGACCTGCTCC
*
26697953 ACCACTGCTCGAAGAGCCAG
66 ACCACTGCTCGGAGAGCCAG
* * *
26697973 GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCGAGTCTTCGACCTGCTCC
1 GATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGACCTGCTCC
* *
26698038 ACCACTGCTAGGCGAGCCCA-
66 ACCACTGCTCGGAGAG-CCAG
* *
26698058 GATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTTTTCGACCTGCTCT
1 GATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGACCTGCTCC
* *
26698123 ACCACCGCTCAGAGAGCCAG
66 ACCACTGCTCGGAGAGCCAG
* *
26698143 GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTCC
1 GATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGACCTGCTCC
*
26698208 ACCACTGCTCGGCGAGCCCA-
66 ACCACTGCTCGGAGAG-CCAG
*
26698228 GATCTGTAAATTTAAACCTGTTACCCTACTGCTTAGGGGGTTAAG
1 GATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAG
26698273 ACTTGTGTCT
Statistics
Matches: 349, Mismatches: 32, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
84 10 0.03
85 333 0.95
86 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.29
Consensus pattern (85 bp):
GATCTGTAAATTTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGACCTGCTCC
ACCACTGCTCGGAGAGCCAG
Found at i:26698406 original size:88 final size:89
Alignment explanation
Indices: 26698246--26698452 Score: 294
Period size: 88 Copynumber: 2.4 Consensus size: 89
26698236 AATTTAAACC
* * * * * *
26698246 TGTTACCCTACTGCTTAGGGGGTT-AAGACT-TGTGTCTTTGATCTGCTCCACTATTGCTTAAGG
1 TGTTACCCTATTGCTTAGGGAGTTAAAGCCTGTGTGTCTTTGATCTGCCCCACTAATGCTTAAAG
*
26698309 AGATAAGATCTGTAATCTTCAGCT
66 AAATAAGATCTGTAATCTTCAGCT
* *
26698333 TGTTACCTTATTGCTTAGGGAGTTAAAGCCTGT-TGTTTTTGATCTGCCCCACTAATGCTTAAAG
1 TGTTACCCTATTGCTTAGGGAGTTAAAGCCTGTGTGTCTTTGATCTGCCCCACTAATGCTTAAAG
*
26698397 AAATAAGATCTGTACTCTTCAGCT
66 AAATAAGATCTGTAATCTTCAGCT
*
26698421 TGTTACCCTATTGCTTAAGGAGTTAAAGCCTG
1 TGTTACCCTATTGCTTAGGGAGTTAAAGCCTG
26698453 CTGAAATTTT
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
87 21 0.20
88 84 0.79
89 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (89 bp):
TGTTACCCTATTGCTTAGGGAGTTAAAGCCTGTGTGTCTTTGATCTGCCCCACTAATGCTTAAAG
AAATAAGATCTGTAATCTTCAGCT
Found at i:26706173 original size:21 final size:21
Alignment explanation
Indices: 26706130--26706174 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
26706120 GCTGGCTTAT
* * *
26706130 CATGTTGTTCTGTGATTCTAG
1 CATGTTGTTCTGGGACTCCAG
*
26706151 CATGTTTTTCTGGGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
26706172 CAT
1 CAT
26706175 TTGATCCCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (21 bp):
CATGTTGTTCTGGGACTCCAG
Found at i:26708043 original size:75 final size:75
Alignment explanation
Indices: 26707924--26708094 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
26707914 CATGGCAAAG
** *
26707924 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
26707983 CCATACTGAGC
65 CCATACCGAGC
26707994 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
26708059 CATACCGAGT
66 CATACCGAGC
***
26708069 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
26708095 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:26708062 original size:35 final size:35
Alignment explanation
Indices: 26707927--26708092 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
26707917 GGCAAAGTGT
* **
26707927 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
26707962 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
26707997 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
26708037 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
26708072 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
26708093 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:26715530 original size:75 final size:75
Alignment explanation
Indices: 26715411--26715581 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
26715401 CATGGCAAAG
** *
26715411 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
26715470 CCATACTGAGC
65 CCATACCGAGC
26715481 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
26715546 CATACCGAGT
66 CATACCGAGC
***
26715556 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
26715582 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:26715549 original size:35 final size:35
Alignment explanation
Indices: 26715414--26715579 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
26715404 GGCAAAGTGT
* **
26715414 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
26715449 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
26715484 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
26715524 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
26715559 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
26715580 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:26717297 original size:6 final size:6
Alignment explanation
Indices: 26717288--26717312 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26717278 CCTCAACCTC
26717288 TCTCTT TCTCTT TCTCTT TCTCTT T
1 TCTCTT TCTCTT TCTCTT TCTCTT T
26717313 TCTAACTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TCTCTT
Found at i:26720094 original size:20 final size:21
Alignment explanation
Indices: 26720069--26720108 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
26720059 ACGAACTATT
*
26720069 ATAATAGTAG-AATATAATAA
1 ATAATAGTAGTAATAAAATAA
*
26720089 ATAATATTAGTAATAAAATA
1 ATAATAGTAGTAATAAAATA
26720109 GTATTAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (21 bp):
ATAATAGTAGTAATAAAATAA
Found at i:26720151 original size:14 final size:14
Alignment explanation
Indices: 26720132--26720180 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
26720122 ACAGTAAAGT
26720132 ATAATAAAATAGTA
1 ATAATAAAATAGTA
*
26720146 ATAATAAAATAGTT
1 ATAATAAAATAGTA
*
26720160 ATAA-AAAA-AATA
1 ATAATAAAATAGTA
*
26720172 ATACTAAAA
1 ATAATAAAA
26720181 ATAATCAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 5 0.17
13 8 0.27
14 17 0.57
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (14 bp):
ATAATAAAATAGTA
Found at i:26725314 original size:40 final size:40
Alignment explanation
Indices: 26725228--26725451 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
26725218 TATTCGGATG
*
26725228 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * *
26725269 ATATCCGGGTTAAGTCCCGAAGGCATTTGCGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
26725309 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * * *
26725350 ATATTCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
26725390 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
26725430 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26725452 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 14 0.09
40 87 0.54
41 59 0.37
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:26725364 original size:81 final size:80
Alignment explanation
Indices: 26725227--26725451 Score: 292
Period size: 81 Copynumber: 2.8 Consensus size: 80
26725217 TTATTCGGAT
* *
26725227 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGAGCTAAGTCCCGAAGG
*
26725292 CATTTGCGCTAGTGAC
65 CATTTGCGCGAGTGAC
*
26725308 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATTCGAGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGAGCTAAGTCCCGAAGG
* *
26725373 CATTTGTGCGAGTTAC
65 CATTTGCGCGAGTGAC
* * * * * * *
26725389 TATACCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTTG-CTATATCCG-GTTAAATCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTATATCCGAGCTAAGTCCCGAAGG
26725452 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 13 0.10
80 16 0.12
81 99 0.77
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGTCCCGAAGGC
ATTTGCGCGAGTGAC
Found at i:26733417 original size:81 final size:80
Alignment explanation
Indices: 26733280--26733474 Score: 300
Period size: 81 Copynumber: 2.4 Consensus size: 80
26733270 TTATTCGGAT
*
26733280 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
*
26733345 CATTTGCGCTAGTGAC
65 CATTTGCGCGAGTGAC
26733361 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
* *
26733426 CATTTGTGCGAGTTAC
65 CATTTGCGCGAGTGAC
* * * *
26733442 TATACCCGGGCTAAGTCCTGAAGGCATTTGTGC
1 GATATCCGGGCTAAGACCCGAAGGCATTTGTGC
26733475 GATTTGCTAT
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 7 0.07
81 98 0.93
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
ATTTGCGCGAGTGAC
Found at i:26733485 original size:40 final size:40
Alignment explanation
Indices: 26733281--26733474 Score: 289
Period size: 40 Copynumber: 4.8 Consensus size: 40
26733271 TATTCGGATG
*
26733281 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * *
26733322 ATATCCGGGTTAAGTCCCGAAGGCATTTGCGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
26733362 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
26733403 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
26733443 ATACCCGGGCTAAGTCCTGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
26733475 GATTTGCTAT
Statistics
Matches: 139, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
40 79 0.57
41 60 0.43
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:26736889 original size:20 final size:20
Alignment explanation
Indices: 26736864--26736917 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
26736854 AGGGGCACAC
26736864 GCCCGTGTGGCCT-GAGACAT
1 GCCCGTGTGGCCTGGA-ACAT
*
26736884 GCCCGTGTGACCTGGAACAT
1 GCCCGTGTGGCCTGGAACAT
26736904 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
26736918 CCCGTGGGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAT
Found at i:26742122 original size:2 final size:2
Alignment explanation
Indices: 26742115--26742147 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26742105 TTTCTTAAGT
26742115 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26742148 TATTTATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26742633 original size:3 final size:3
Alignment explanation
Indices: 26742625--26742651 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
26742615 TAAAAAATGC
26742625 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
26742652 GATGATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26743212 original size:21 final size:21
Alignment explanation
Indices: 26743186--26743228 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
26743176 GTCAACACAC
26743186 TTGTCTACATGGCATGTCATG
1 TTGTCTACATGGCATGTCATG
*
26743207 TTGTCTACCTGGCATGTCATG
1 TTGTCTACATGGCATGTCATG
26743228 T
1 T
26743229 GTCAGCTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (21 bp):
TTGTCTACATGGCATGTCATG
Found at i:26743726 original size:18 final size:18
Alignment explanation
Indices: 26743695--26743729 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26743685 CTATTGAATT
* *
26743695 AATTTTAATTTATATTAG
1 AATTTAAATGTATATTAG
26743713 AATTTAAATGTATATTA
1 AATTTAAATGTATATTA
26743730 AATGTTTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (18 bp):
AATTTAAATGTATATTAG
Found at i:26750093 original size:35 final size:36
Alignment explanation
Indices: 26750048--26750121 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 36
26750038 TATTGGTACG
*
26750048 TGGATTTAATATTTTTAATTTAATATTAATATA-AT
1 TGGATCTAATATTTTTAATTTAATATTAATATATAT
** **
26750083 TGGATCTAATATTTTTGCTTTGGTATTAATATATAT
1 TGGATCTAATATTTTTAATTTAATATTAATATATAT
26750119 TGG
1 TGG
26750122 TATGGATGCG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
35 28 0.85
36 5 0.15
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (36 bp):
TGGATCTAATATTTTTAATTTAATATTAATATATAT
Found at i:26752742 original size:31 final size:30
Alignment explanation
Indices: 26752704--26752800 Score: 85
Period size: 31 Copynumber: 3.2 Consensus size: 30
26752694 AATGGCTTAA
*
26752704 TGACTAAAATGTTACAACATGAT-AACGTAAG
1 TGACTAAAATGTT--AACATGATAAACATAAG
**
26752735 TGACTAAAATG-TAACATTTTAAACATAAG
1 TGACTAAAATGTTAACATGATAAACATAAG
*
26752764 TGACTAAAATG-TAAC-TCGAAGTAAACAAAAG
1 TGACTAAAATGTTAACAT-G-A-TAAACATAAG
26752795 TGACTA
1 TGACTA
26752801 TTTTAGTTGT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
28 7 0.12
29 22 0.39
30 1 0.02
31 26 0.46
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.26
Consensus pattern (30 bp):
TGACTAAAATGTTAACATGATAAACATAAG
Found at i:26754166 original size:12 final size:12
Alignment explanation
Indices: 26754149--26754173 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26754139 GTTAAAAGAC
26754149 TACCAATTTAAG
1 TACCAATTTAAG
26754161 TACCAATTTAAG
1 TACCAATTTAAG
26754173 T
1 T
26754174 TATTTATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TACCAATTTAAG
Found at i:26762220 original size:27 final size:27
Alignment explanation
Indices: 26762199--26762278 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
26762189 ATGCTGATTG
26762199 CCAGGCTGGTGTTCAAATTGCTGCTGA
1 CCAGGCTGGTGTTCAAATTGCTGCTGA
* * *
26762226 CTAGGCTGGTGTTCGAATTGCTGCTGG
1 CCAGGCTGGTGTTCAAATTGCTGCTGA
** * * *
26762253 GTAGGCCGGTGATCGAATTGCTGCTG
1 CCAGGCTGGTGTTCAAATTGCTGCTG
26762279 GTTAGGCCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.15, C:0.20, G:0.35, T:0.30
Consensus pattern (27 bp):
CCAGGCTGGTGTTCAAATTGCTGCTGA
Found at i:26762279 original size:27 final size:27
Alignment explanation
Indices: 26762214--26762446 Score: 259
Period size: 27 Copynumber: 8.6 Consensus size: 27
26762204 CTGGTGTTCA
** * *
26762214 AATTGCTGCTGACTAGGCTGGTGTTCG
1 AATTGCTGCTGGGTAGGCCGGTGATCG
26762241 AATTGCTGCTGGGTAGGCCGGTGATCG
1 AATTGCTGCTGGGTAGGCCGGTGATCG
* * *
26762268 AATTGCTGCTGGTTAGGCCGGCGCTCG
1 AATTGCTGCTGGGTAGGCCGGTGATCG
* * * *
26762295 AATGGCTGTTGGTTAGGCCGGTGTTCG
1 AATTGCTGCTGGGTAGGCCGGTGATCG
* * * * *
26762322 AATGGCTGTTGGTTAGGCCGTTGATCA
1 AATTGCTGCTGGGTAGGCCGGTGATCG
* *
26762349 AATTGCTGTTGGGTAGGCCGGTGTTCG
1 AATTGCTGCTGGGTAGGCCGGTGATCG
* *
26762376 AATGGCTGTTGGGTAGGCCGGTGATCG
1 AATTGCTGCTGGGTAGGCCGGTGATCG
** *
26762403 AATTGCTGCTGGGCCGGCAGGTGATCG
1 AATTGCTGCTGGGTAGGCCGGTGATCG
26762430 AATTGCTGCTGGGTAGG
1 AATTGCTGCTGGGTAGG
26762447 GCAATAGTCG
Statistics
Matches: 178, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 178 1.00
ACGTcount: A:0.14, C:0.18, G:0.39, T:0.29
Consensus pattern (27 bp):
AATTGCTGCTGGGTAGGCCGGTGATCG
Found at i:26762443 original size:81 final size:81
Alignment explanation
Indices: 26762227--26762446 Score: 305
Period size: 81 Copynumber: 2.7 Consensus size: 81
26762217 TGCTGCTGAC
* *
26762227 TAGGCTGGTGTTCGAATTGCTGCTGGGTAGGCCGGTGATCGAATTGCTGCTGGTTAGGCCGGCGC
1 TAGGCCGGTGTTCGAATTGCTGCTGGGTAGGCCGGTGATCGAATTGCTGCTGGGTAGGCCGGCGC
*
26762292 TCGAATGGCTGTTGGT
66 TCGAATGGCTGTTGGG
* * * * * * * *
26762308 TAGGCCGGTGTTCGAATGGCTGTTGGTTAGGCCGTTGATCAAATTGCTGTTGGGTAGGCCGGTGT
1 TAGGCCGGTGTTCGAATTGCTGCTGGGTAGGCCGGTGATCGAATTGCTGCTGGGTAGGCCGGCGC
26762373 TCGAATGGCTGTTGGG
66 TCGAATGGCTGTTGGG
* ** *
26762389 TAGGCCGGTGATCGAATTGCTGCTGGGCCGGCAGGTGATCGAATTGCTGCTGGGTAGG
1 TAGGCCGGTGTTCGAATTGCTGCTGGGTAGGCCGGTGATCGAATTGCTGCTGGGTAGG
26762447 GCAATAGTCG
Statistics
Matches: 118, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 118 1.00
ACGTcount: A:0.14, C:0.17, G:0.40, T:0.29
Consensus pattern (81 bp):
TAGGCCGGTGTTCGAATTGCTGCTGGGTAGGCCGGTGATCGAATTGCTGCTGGGTAGGCCGGCGC
TCGAATGGCTGTTGGG
Found at i:26762738 original size:22 final size:22
Alignment explanation
Indices: 26762710--26762756 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
26762700 AACAGTTTTA
26762710 CTGTTTCATGAGAAACCCAACT
1 CTGTTTCATGAGAAACCCAACT
26762732 CTGTTTCATGAGAAACCCAACT
1 CTGTTTCATGAGAAACCCAACT
26762754 CTG
1 CTG
26762757 CATAGTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (22 bp):
CTGTTTCATGAGAAACCCAACT
Found at i:26766927 original size:9 final size:9
Alignment explanation
Indices: 26766915--26766947 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
26766905 GAATTATTTG
26766915 AATCGAGTT
1 AATCGAGTT
26766924 AATCGAGTT
1 AATCGAGTT
*
26766933 AATCGAATT
1 AATCGAGTT
26766942 AATCGA
1 AATCGA
26766948 ATCAACTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (9 bp):
AATCGAGTT
Found at i:26768024 original size:54 final size:54
Alignment explanation
Indices: 26767966--26768113 Score: 163
Period size: 54 Copynumber: 2.7 Consensus size: 54
26767956 TTCAACATCA
* *
26767966 CCCTCCCTAGCAGTTTCTACACC-TCCAACATCACCTTCCCTAGTAGCTTCTACC
1 CCCTCCCTAGCAGTTTCTAC-CCATTCAACATCACCCTCCCTAGTAGCTTCTACC
* ** * * * * * *
26768020 CCCTCCCTAGTAACTTCTACCCTTTCAAAAACACCCTCCTTAGTAGTTTGTACC
1 CCCTCCCTAGCAGTTTCTACCCATTCAACATCACCCTCCCTAGTAGCTTCTACC
* *
26768074 CCCTCCCCATCAGTTTCTACCCATTCAACATCACCCTCCC
1 CCCTCCCTAGCAGTTTCTACCCATTCAACATCACCCTCCC
26768114 CATCAATTTC
Statistics
Matches: 74, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
53 2 0.03
54 72 0.97
ACGTcount: A:0.22, C:0.44, G:0.06, T:0.28
Consensus pattern (54 bp):
CCCTCCCTAGCAGTTTCTACCCATTCAACATCACCCTCCCTAGTAGCTTCTACC
Found at i:26768028 original size:21 final size:21
Alignment explanation
Indices: 26768002--26768041 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26767992 AACATCACCT
*
26768002 TCCCTAGTAGCTTCTACCCCC
1 TCCCTAGTAACTTCTACCCCC
26768023 TCCCTAGTAACTTCTACCC
1 TCCCTAGTAACTTCTACCC
26768042 TTTCAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.45, G:0.07, T:0.30
Consensus pattern (21 bp):
TCCCTAGTAACTTCTACCCCC
Found at i:26770228 original size:20 final size:21
Alignment explanation
Indices: 26770203--26770242 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26770193 TTAATTAACG
26770203 TTAATTAA-TTAACTTAATCT
1 TTAATTAATTTAACTTAATCT
*
26770223 TTAATTAATTTACCTTAATC
1 TTAATTAATTTAACTTAATC
26770243 ATCATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (21 bp):
TTAATTAATTTAACTTAATCT
Found at i:26775113 original size:134 final size:134
Alignment explanation
Indices: 26774450--26775143 Score: 634
Period size: 134 Copynumber: 5.2 Consensus size: 134
26774440 GTAAAAGGTT
* * * * **** * * * *
26774450 GTGATCATAAATCAGGGAATTGTTTAAATGGAGTTGTGATTGTAAATTGACAAACTGTTTAAGAA
1 GTGATCGTAAATCAGCGAACTGTTTAAGTGGAGTCACAATCGTAAATCGACGAACTCTTTAAGAA
* * * * *
26774515 GTGATCATGATCGTAAATCGATGAACTAAAGCTGTGATCGTAAATCAGCGAGCTTTAAAAATTAC
66 GTGTTCATGATCGTAAATCAATGAACTGAAGCTGTAATCGTAAATCAGCGAGCTTTAAAAATGAC
*
26774580 AGTT
131 AGTC
* * ** * * * * * **
26774584 GTGATCATAAATAAGCTTACTGTTTAGGTGAAGTCACGATTGTAAATCGATGAACTCTTTTTGAA
1 GTGATCGTAAATCAGCGAACTGTTTAAGTGGAGTCACAATCGTAAATCGACGAACTCTTTAAGAA
** * * * ** * *
26774649 GTGTTTGTGATCGTAAATCAATGAACCGAAACTGTTATTATAAATCAACGAGCTTTAAAAATAAC
66 GTGTTCATGATCGTAAATCAATGAACTGAAGCTGTAATCGTAAATCAGCGAGCTTTAAAAATGAC
26774714 AGTC
131 AGTC
* * * *
26774718 GTGATCGTAAATTAGCTAACTGTTTAAGTGGAGTCACAATCGTAAATCGATGAACTATTTAAGAA
1 GTGATCGTAAATCAGCGAACTGTTTAAGTGGAGTCACAATCGTAAATCGACGAACTCTTTAAGAA
* * ** * * *
26774783 GTGATCATGATCGTAAGTGGATGAATTGAAGCTATAATCGTAAATCAACGAGCTTTAAAAATGAC
66 GTGTTCATGATCGTAAATCAATGAACTGAAGCTGTAATCGTAAATCAGCGAGCTTTAAAAATGAC
*
26774848 AGTT
131 AGTC
* * * * *
26774852 GTGATCATAAATCAGTGAACTGTTTAAGTGGAGTTACAATCGTAAATCGGCGAACTCTTTATGAA
1 GTGATCGTAAATCAGCGAACTGTTTAAGTGGAGTCACAATCGTAAATCGACGAACTCTTTAAGAA
* ** * * *
26774917 GTGTTCATGATCGTAAATTAATGAACT-AAAATCGTAAACGTAAATCAGCGAGTTTTAAAAATGG
66 GTGTTCATGATCGTAAATCAATGAACTGAAGCT-GTAATCGTAAATCAGCGAGCTTTAAAAATGA
26774981 CAGTC
130 CAGTC
* * * ***** * *
26774986 ATGATCGTAAATCAGCAAACTGTTTAAGTGGGGTGTTGGTCGTAAATTGACGAACTCTTTACGAA
1 GTGATCGTAAATCAGCGAACTGTTTAAGTGGAGTCACAATCGTAAATCGACGAACTCTTTAAGAA
* * * * * * *
26775051 ATGTTCATGATCATAAATTAATGAACTGAAGCTGTGATTGTAAATTAGCAAGCTTTAAAAATGAC
66 GTGTTCATGATCGTAAATCAATGAACTGAAGCTGTAATCGTAAATCAGCGAGCTTTAAAAATGAC
*
26775116 AATC
131 AGTC
* * *
26775120 ATGATTGTAAATCAACGAACTGTT
1 GTGATCGTAAATCAGCGAACTGTT
26775144 AGAAAATTGA
Statistics
Matches: 453, Mismatches: 105, Indels: 4
0.81 0.19 0.01
Matches are distributed among these distances:
133 3 0.01
134 447 0.99
135 3 0.01
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (134 bp):
GTGATCGTAAATCAGCGAACTGTTTAAGTGGAGTCACAATCGTAAATCGACGAACTCTTTAAGAA
GTGTTCATGATCGTAAATCAATGAACTGAAGCTGTAATCGTAAATCAGCGAGCTTTAAAAATGAC
AGTC
Found at i:26775133 original size:268 final size:268
Alignment explanation
Indices: 26774491--26775116 Score: 734
Period size: 268 Copynumber: 2.3 Consensus size: 268
26774481 AGTTGTGATT
* * *
26774491 GTAAATTGACAAACTGTTTAAGAAGTGATCATGATCGTAAATCGATGAACTAAAGCTGTGATCGT
1 GTAAATTGACGAACTATTTAAGAAGTGATCATGATCGTAAATCGATGAACTGAAGCTGTGATCGT
* * * *
26774556 AAATCAGCGAGCTTTAAAAATTACAGTTGTGATCATAAATAAGCT-TACTGTTTAGGTGAAGTCA
66 AAATCAGCGAGCTTTAAAAATGACAGTTGTGATCATAAATCAG-TGAACTGTTTAAGTGAAGTCA
* * * * ** * *
26774620 CGATTGTAAATCGATGAACTCTTTTTGAAGTGTTTGTGATCGTAAATCAATGAACCGAAACTGTT
130 CAATCGTAAATCGACGAACTCTTTATGAAGTGTTCATGATCGTAAATCAATGAACCAAAACTGTA
** * * *
26774685 ATTATAAATCAACGAGCTTTAAAAATAACAGTCGTGATCGTAAATTAGCTAACTGTTTAAGTGGA
195 AACATAAATCAACGAGCTTTAAAAATAACAGTCATGATCGTAAATCAGCAAACTGTTTAAGTGGA
26774750 GTCACAATC
260 GTCACAATC
* * * * * * *
26774759 GTAAATCGATGAACTATTTAAGAAGTGATCATGATCGTAAGTGGATGAATTGAAGCTATAATCGT
1 GTAAATTGACGAACTATTTAAGAAGTGATCATGATCGTAAATCGATGAACTGAAGCTGTGATCGT
* * *
26774824 AAATCAACGAGCTTTAAAAATGACAGTTGTGATCATAAATCAGTGAACTGTTTAAGTGGAGTTAC
66 AAATCAGCGAGCTTTAAAAATGACAGTTGTGATCATAAATCAGTGAACTGTTTAAGTGAAGTCAC
* * *
26774889 AATCGTAAATCGGCGAACTCTTTATGAAGTGTTCATGATCGTAAATTAATGAACTAAAA-TCGTA
131 AATCGTAAATCGACGAACTCTTTATGAAGTGTTCATGATCGTAAATCAATGAACCAAAACT-GTA
* * * ** *
26774953 AACGTAAATCAGCGAGTTTTAAAAATGGCAGTCATGATCGTAAATCAGCAAACTGTTTAAGTGGG
195 AACATAAATCAACGAGCTTTAAAAATAACAGTCATGATCGTAAATCAGCAAACTGTTTAAGTGGA
*****
26775018 GTGTTGGTC
260 GTCACAATC
* * * * * ** *
26775027 GTAAATTGACGAACTCTTTACGAAATGTTCATGATCATAAATTAATGAACTGAAGCTGTGATTGT
1 GTAAATTGACGAACTATTTAAGAAGTGATCATGATCGTAAATCGATGAACTGAAGCTGTGATCGT
* *
26775092 AAATTAGCAAGCTTTAAAAATGACA
66 AAATCAGCGAGCTTTAAAAATGACA
26775117 ATCATGATTG
Statistics
Matches: 295, Mismatches: 61, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
267 2 0.01
268 293 0.99
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.31
Consensus pattern (268 bp):
GTAAATTGACGAACTATTTAAGAAGTGATCATGATCGTAAATCGATGAACTGAAGCTGTGATCGT
AAATCAGCGAGCTTTAAAAATGACAGTTGTGATCATAAATCAGTGAACTGTTTAAGTGAAGTCAC
AATCGTAAATCGACGAACTCTTTATGAAGTGTTCATGATCGTAAATCAATGAACCAAAACTGTAA
ACATAAATCAACGAGCTTTAAAAATAACAGTCATGATCGTAAATCAGCAAACTGTTTAAGTGGAG
TCACAATC
Found at i:26778619 original size:30 final size:30
Alignment explanation
Indices: 26778583--26778642 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
26778573 TAGCAAAAAA
26778583 CTCTTAAATTTCTCCCTAAATTTCTCAAAG
1 CTCTTAAATTTCTCCCTAAATTTCTCAAAG
*
26778613 CTCTTAAATTTCTCCTTAAATTTCTCAAAG
1 CTCTTAAATTTCTCCCTAAATTTCTCAAAG
26778643 TTCTCTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.03, T:0.42
Consensus pattern (30 bp):
CTCTTAAATTTCTCCCTAAATTTCTCAAAG
Found at i:26779066 original size:4 final size:4
Alignment explanation
Indices: 26779052--26779090 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
26779042 ACGAATTTTT
* *
26779052 TTTA TTT- TTTA TTTA TTTG TTTA TTTA TTTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
26779091 GGAAAACTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:26779090 original size:12 final size:11
Alignment explanation
Indices: 26779047--26779081 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
26779037 AGTTTACGAA
26779047 TTTTT-TTTAT
1 TTTTTATTTAT
26779057 TTTTTATTTAT
1 TTTTTATTTAT
26779068 TTGTTTATTTAT
1 TT-TTTATTTAT
26779080 TT
1 TT
26779082 ATTTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 5 0.22
11 7 0.30
12 11 0.48
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (11 bp):
TTTTTATTTAT
Found at i:26779169 original size:14 final size:14
Alignment explanation
Indices: 26779150--26779179 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26779140 TTATATCGAG
26779150 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
26779164 ACCAATCCAATTCA
1 ACCAATCCAAATCA
26779178 AC
1 AC
26779180 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:26785277 original size:98 final size:97
Alignment explanation
Indices: 26785162--26785351 Score: 222
Period size: 98 Copynumber: 1.9 Consensus size: 97
26785152 GGAAGTACTA
* * ** * **
26785162 TAGAAAAGGAGAGTCCACGTAGGAGC-TTTCTTCATCAATTTTGTTGACAGTACATCTTGCTTAA
1 TAGAAAAAGAGAGTCCACATAGGAGCATTT-TTCATCAATTTTACTGACAGTACATCCTAATTAA
*
26785226 AGCATTTTTAACACTATTTTTTCAAGAACTATTG
65 AGCATTTTTAACACTATTTGTTC-AGAACTATTG
* * *
26785260 TAGAAAAAGAGCA-TCCACATGGGAGCATTTTTCATCAATTTTACTGACAGTGCATCCTAATTGA
1 TAGAAAAAGAG-AGTCCACATAGGAGCATTTTTCATCAATTTTACTGACAGTACATCCTAATTAA
**
26785324 AGTGTTTTTAACACTATTTGTTCAGAAC
65 AGCATTTTTAACACTATTTGTTCAGAAC
26785352 CGTCTTTTCA
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
97 5 0.06
98 68 0.88
99 4 0.05
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (97 bp):
TAGAAAAAGAGAGTCCACATAGGAGCATTTTTCATCAATTTTACTGACAGTACATCCTAATTAAA
GCATTTTTAACACTATTTGTTCAGAACTATTG
Found at i:26785519 original size:126 final size:126
Alignment explanation
Indices: 26785240--26785518 Score: 382
Period size: 126 Copynumber: 2.2 Consensus size: 126
26785230 TTTTTAACAC
* * *
26785240 TATTTTTTCAAGAACTATTGTAGAAAAAGAGCATCCACATGGGAGCATTTTTCATCAATTTTACT
1 TATTTTTTCAGGAACTACTGTAGAAAAAGAGCATCCACATGGGAACATTTTTCATCAATTTTACT
* *
26785305 GACAGTGCATCCTAATTGAAGTGTTTTTAACACTATTTGTTCAGAACCGTCTTTTCAAATT
66 GACAGTGCATCCTAATTGAAGTGTTTTTAACACTATTTGTTCAGAACCGTCTTCTCAAAAT
* ** * * *
26785366 TATTTTTTCAGGACCTACTGTAGAAAAAGAGCATCCATGTGGGAACTTTTTTTAGT-AATTTTGC
1 TATTTTTTCAGGAACTACTGTAGAAAAAGAGCATCCACATGGGAACATTTTTCA-TCAATTTTAC
** * * *
26785430 TGACAGTGCATCCTGCTTGAAGT-TTTTTGACATTATTTGTTCAGAATCGTCTTCTCAAAAT
65 TGACAGTGCATCCTAATTGAAGTGTTTTTAACACTATTTGTTCAGAACCGTCTTCTCAAAAT
*
26785491 TATTTTTTCAGGAACTACTATAGAAAAA
1 TATTTTTTCAGGAACTACTGTAGAAAAA
26785519 AACCAAAGTC
Statistics
Matches: 134, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
125 59 0.44
126 74 0.55
127 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (126 bp):
TATTTTTTCAGGAACTACTGTAGAAAAAGAGCATCCACATGGGAACATTTTTCATCAATTTTACT
GACAGTGCATCCTAATTGAAGTGTTTTTAACACTATTTGTTCAGAACCGTCTTCTCAAAAT
Found at i:26785620 original size:34 final size:32
Alignment explanation
Indices: 26785579--26785687 Score: 121
Period size: 34 Copynumber: 3.3 Consensus size: 32
26785569 CACAATATTA
26785579 TTTAAAAAAAGTAAACCCAAATTTAATTAATTT
1 TTTAAAAAAA-TAAACCCAAATTTAATTAATTT
**
26785612 TCTTAAAAAAAATAAAATCAAATTTAATTAATTT
1 T-TT-AAAAAAATAAACCCAAATTTAATTAATTT
** *
26785646 ATTTAAAATCCATAAACCCTAATTTAATTAA-TT
1 -TTTAAAA-AAATAAACCCAAATTTAATTAATTT
26785679 TTTAAAAAA
1 TTTAAAAAA
26785688 GAACATTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
32 7 0.11
33 7 0.11
34 41 0.65
35 8 0.13
ACGTcount: A:0.52, C:0.09, G:0.01, T:0.38
Consensus pattern (32 bp):
TTTAAAAAAATAAACCCAAATTTAATTAATTT
Found at i:26788742 original size:12 final size:12
Alignment explanation
Indices: 26788725--26788750 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26788715 TGGACGCTAT
26788725 TTTTTCTTCTTC
1 TTTTTCTTCTTC
26788737 TTTTTCTTCTTC
1 TTTTTCTTCTTC
26788749 TT
1 TT
26788751 CTATGCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTCTTCTTC
Found at i:26790406 original size:27 final size:27
Alignment explanation
Indices: 26790375--26790429 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
26790365 TTTCCAAAAT
26790375 ACAACTTGAACGACTTATGATATTATC
1 ACAACTTGAACGACTTATGATATTATC
26790402 ACAACTTGAACGACTTATGATATTATC
1 ACAACTTGAACGACTTATGATATTATC
26790429 A
1 A
26790430 AAGTTTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (27 bp):
ACAACTTGAACGACTTATGATATTATC
Found at i:26795810 original size:22 final size:22
Alignment explanation
Indices: 26795783--26795824 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
26795773 AACATTTTCA
26795783 AATATAATTTTATTTAATCTGC
1 AATATAATTTTATTTAATCTGC
*
26795805 AATATAATTTTATTTTATCT
1 AATATAATTTTATTTAATCT
26795825 AATTAATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (22 bp):
AATATAATTTTATTTAATCTGC
Found at i:26796583 original size:21 final size:19
Alignment explanation
Indices: 26796549--26796612 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
26796539 TAAATAATCC
*
26796549 AAAAAATTTAAAAATTTAA
1 AAAAAATTTAAAAATATAA
*
26796568 ATAAAAATCTTGAAAATATAA
1 A-AAAAAT-TTAAAAATATAA
* * * *
26796589 AAAAACTATAATAACATAA
1 AAAAAATTTAAAAATATAA
26796608 AAAAA
1 AAAAA
26796613 TTACCTTTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
19 14 0.39
20 11 0.31
21 11 0.31
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAAAATTTAAAAATATAA
Found at i:26800425 original size:46 final size:48
Alignment explanation
Indices: 26800349--26800474 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 48
26800339 CAATATATGC
* *
26800349 GCTAGTGTAAGACATGTTTGCGACACGCATCAGCAAC-AG-TA-TGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCAACGAGATATTGA-A
* ** *
26800395 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCAACGAGATATTGAA
* *
26800443 GCCAGTGTAAGACATGTCTGGGACATGCATCA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCA
26800475 ACATTGATAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 32 0.47
47 2 0.03
48 32 0.47
49 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCAGCAACGAGATATTGAA
Found at i:26800548 original size:94 final size:94
Alignment explanation
Indices: 26800391--26800562 Score: 227
Period size: 94 Copynumber: 1.8 Consensus size: 94
26800381 GCAACAGTAT
* * * * *** * *
26800391 GAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATTTAAGCCAGTGTAAGAC
1 GAGAACTAATGTAAGAAATGTCTGGGACATGCATCGGCCTCGAGATACACAAGCCAATATAAGAC
26800456 ATGTCTGGGACATGCATCAACATTGATAC
66 ATGTCTGGGACATGCATCAACATTGATAC
* * *
26800485 GAGAACTAATGTAAGAAATGTCTGGGACATGTATCGGCCTCGCGATACACAAGCTAATATAAGAC
1 GAGAACTAATGTAAGAAATGTCTGGGACATGCATCGGCCTCGAGATACACAAGCCAATATAAGAC
*
26800550 CTGTCTGGGACAT
66 ATGTCTGGGACAT
26800563 AGCGTCAGCT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
94 65 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (94 bp):
GAGAACTAATGTAAGAAATGTCTGGGACATGCATCGGCCTCGAGATACACAAGCCAATATAAGAC
ATGTCTGGGACATGCATCAACATTGATAC
Found at i:26801500 original size:40 final size:42
Alignment explanation
Indices: 26801456--26801535 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
26801446 AAGGTTTTTA
26801456 GACACGGGCTA-AGACAA-GG-GCGTGTCATGGCCGTGTGAGG
1 GACACGGGCTATAGACAATGGCGCGTGTCA-GGCCGTGTGAGG
*
26801496 GACACGGGCTATAGACAATGGCGTGTGTCAGGCCGTGTGA
1 GACACGGGCTATAGACAATGGCGCGTGTCAGGCCGTGTGA
26801536 AAACCCCTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
40 11 0.31
41 6 0.17
42 12 0.33
43 7 0.19
ACGTcount: A:0.23, C:0.20, G:0.40, T:0.17
Consensus pattern (42 bp):
GACACGGGCTATAGACAATGGCGCGTGTCAGGCCGTGTGAGG
Found at i:26801519 original size:41 final size:40
Alignment explanation
Indices: 26801456--26801535 Score: 117
Period size: 40 Copynumber: 1.9 Consensus size: 40
26801446 AAGGTTTTTA
26801456 GACACGGGCTAAGACAAGGGC-GTGTCATGGCCGTGTGAGG
1 GACACGGGCTAAGACAAGGGCGGTGTCA-GGCCGTGTGAGG
*
26801496 GACACGGGCTATAGACAATGGCGTGTGTCAGGCCGTGTGA
1 GACACGGGCTA-AGACAAGGGCG-GTGTCAGGCCGTGTGA
26801536 AAACCCCTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
40 11 0.31
41 9 0.25
42 10 0.28
43 6 0.17
ACGTcount: A:0.23, C:0.20, G:0.40, T:0.17
Consensus pattern (40 bp):
GACACGGGCTAAGACAAGGGCGGTGTCAGGCCGTGTGAGG
Found at i:26804222 original size:16 final size:17
Alignment explanation
Indices: 26804196--26804230 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
26804186 TAGAATTGGG
*
26804196 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
26804213 TTGA-AAAATTAATTAA
1 TTGAGAAAATTAATTAA
26804229 TT
1 TT
26804231 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:26804838 original size:5 final size:5
Alignment explanation
Indices: 26804787--26804831 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
26804777 TGTTAAAATA
26804787 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
26804832 ATTATATAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:26805203 original size:19 final size:15
Alignment explanation
Indices: 26805157--26805198 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
26805147 CGATGAATTT
26805157 ATTGAATTTATATTG
1 ATTGAATTTATATTG
26805172 ATTGAATTTATATTG
1 ATTGAATTTATATTG
26805187 ATTGAA-TTATAT
1 ATTGAATTTATAT
26805199 AATATATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 6 0.22
15 21 0.78
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (15 bp):
ATTGAATTTATATTG
Done.