Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 109 of 425
Found at i:32025106 original size:46 final size:44
Alignment explanation
Indices: 32025019--32025126 Score: 110
Period size: 46 Copynumber: 2.4 Consensus size: 44
32025009 AACGAGAGCT
** ** * *
32025019 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGCAACATGCATCGAACTCAAAATGT-A-CC
*
32025065 AGTGTAAGACATGTCTGCAACATGCATC-AACTACAAAATGTATC
1 AGTGTAAGACATGTCTGCAACATGCATCGAACT-CAAAATGTACC
32025109 AGTGTAAGACCATGTCTG
1 AGTGTAAGA-CATGTCTG
32025127 GGACATAGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
44 10 0.19
45 11 0.21
46 32 0.60
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGCAACATGCATCGAACTCAAAATGTACC
Found at i:32029483 original size:90 final size:87
Alignment explanation
Indices: 32029395--32029595 Score: 237
Period size: 89 Copynumber: 2.3 Consensus size: 87
32029385 TTTAAAAAAT
* * * *
32029395 AAAAATAAAATAAGCCCCT-TTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATGCA-TCA
1 AAAAAGAAATTAAGCCCCTCTTTTTTTGAACTCAATTGGGTACTTGAACTTTCAAAATGCATTCA
32029458 AAAAGACCCTCAAATCTTT-TCAA
66 AAAA-ACCCTCAAA-CTTTATCAA
* * *
32029481 AAAAAGCAATTAAGCCCCTACCTTTTTTTTAACTCAATTGGGTATTTGAACTTTCAAAATGCATT
1 AAAAAGAAATTAAGCCCCT--CTTTTTTTGAACTCAATTGGGTACTTGAACTTTCAAAATGCATT
*
32029546 GAAAAAACCCTCAAACTTTATCAAA
64 CAAAAAACCCTCAAACTTTATC-AA
* *
32029571 AAAAAGCAATTAGGCCCCTGCTTTT
1 AAAAAGAAATTAAGCCCCT-CTTTT
32029596 ATTAAAAATT
Statistics
Matches: 99, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
86 16 0.16
88 4 0.04
89 53 0.54
90 26 0.26
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (87 bp):
AAAAAGAAATTAAGCCCCTCTTTTTTTGAACTCAATTGGGTACTTGAACTTTCAAAATGCATTCA
AAAAACCCTCAAACTTTATCAA
Found at i:32029524 original size:89 final size:91
Alignment explanation
Indices: 32029411--32029589 Score: 267
Period size: 89 Copynumber: 2.0 Consensus size: 91
32029401 AAAATAAGCC
* *
32029411 CCTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATGCA-TCAAAAAGACCCTCAAATCT
1 CCTTTTTTTTGAACTCAATTGGGTACTTGAACTTTCAAAATGCATTCAAAAA-ACCCTCAAA-CT
32029475 TT-TC-AAAAAAAGCAATTAAGCCCCTA
64 TTATCAAAAAAAAGCAATTAAGCCCCTA
* *
32029501 CCTTTTTTTT-AACTCAATTGGGTATTTGAACTTTCAAAATGCATTGAAAAAACCCTCAAACTTT
1 CCTTTTTTTTGAACTCAATTGGGTACTTGAACTTTCAAAATGCATTCAAAAAACCCTCAAACTTT
*
32029565 ATCAAAAAAAAGCAATTAGGCCCCT
66 ATCAAAAAAAAGCAATTAAGCCCCT
32029590 GCTTTTATTA
Statistics
Matches: 81, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
88 4 0.05
89 41 0.51
90 36 0.44
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (91 bp):
CCTTTTTTTTGAACTCAATTGGGTACTTGAACTTTCAAAATGCATTCAAAAAACCCTCAAACTTT
ATCAAAAAAAAGCAATTAAGCCCCTA
Found at i:32031943 original size:13 final size:13
Alignment explanation
Indices: 32031922--32031958 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
32031912 TAATTTAATT
*
32031922 TTTACTATTTATC
1 TTTAATATTTATC
32031935 TTTAATATTTTATC
1 TTTAATA-TTTATC
32031949 TTTAATATTT
1 TTTAATATTT
32031959 TCAATCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTAATATTTATC
Found at i:32031946 original size:14 final size:14
Alignment explanation
Indices: 32031929--32031959 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32031919 ATTTTTACTA
32031929 TTTATCTTTAATAT
1 TTTATCTTTAATAT
32031943 TTTATCTTTAATAT
1 TTTATCTTTAATAT
32031957 TTT
1 TTT
32031960 CAATCTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTATCTTTAATAT
Found at i:32033322 original size:13 final size:13
Alignment explanation
Indices: 32033301--32033349 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
32033291 TATTACATTT
*
32033301 TTATTTATAATAA
1 TTATATATAATAA
32033314 TTATATATAATAA
1 TTATATATAATAA
*
32033327 -TA-A-ATGATAA
1 TTATATATAATAA
*
32033337 TTTTATATAATAA
1 TTATATATAATAA
32033350 ACAACCGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
10 6 0.21
11 2 0.07
12 3 0.10
13 18 0.62
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (13 bp):
TTATATATAATAA
Found at i:32036667 original size:26 final size:26
Alignment explanation
Indices: 32036638--32036688 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
32036628 ATTAATTATC
32036638 ATATCTTTTAA-AAATTTAAAAATTTT
1 ATAT-TTTTAATAAATTTAAAAATTTT
*
32036664 ATATTTTTAATAAATTTTAAAATTT
1 ATATTTTTAATAAATTTAAAAATTT
32036689 AAAATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
ATATTTTTAATAAATTTAAAAATTTT
Found at i:32039779 original size:43 final size:43
Alignment explanation
Indices: 32039655--32039779 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 43
32039645 AGTATCGTAC
** * *
32039655 CAATGCCATATCTTAGATATGGTCTTACATGT-GATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGTAAATCTCATAT
* * * *
32039697 CAATGCTAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATAT
1 CAATGC-CATATCCCAGATATGGTCTTACACGTAAATCTCATAT
* * *
32039740 CGATGCCATATCCCAGATATGATCTTCCACGTAAATCTCA
1 CAATGCCATATCCCAGATATGGTCTTACACGTAAATCTCA
32039780 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
42 26 0.40
43 39 0.60
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (43 bp):
CAATGCCATATCCCAGATATGGTCTTACACGTAAATCTCATAT
Found at i:32045867 original size:19 final size:18
Alignment explanation
Indices: 32045830--32045873 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
32045820 ATACATACAG
32045830 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
32045847 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
32045866 TACTAATT
1 TAATAATT
32045874 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:32050043 original size:12 final size:12
Alignment explanation
Indices: 32050028--32050052 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32050018 ACAGTAAATA
32050028 ATAAAAATTTTC
1 ATAAAAATTTTC
32050040 ATAAAAATTTTC
1 ATAAAAATTTTC
32050052 A
1 A
32050053 AACATACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAAAAATTTTC
Found at i:32050103 original size:19 final size:18
Alignment explanation
Indices: 32050066--32050109 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
32050056 ATACATACAG
32050066 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
32050083 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
32050102 TACTAATT
1 TAATAATT
32050110 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:32060613 original size:9 final size:9
Alignment explanation
Indices: 32060601--32060625 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
32060591 AAAATGAGGC
32060601 TAAACCTCG
1 TAAACCTCG
32060610 TAAACCTCG
1 TAAACCTCG
32060619 TAAACCT
1 TAAACCT
32060626 TGTTCTTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.32, G:0.08, T:0.24
Consensus pattern (9 bp):
TAAACCTCG
Found at i:32074122 original size:13 final size:13
Alignment explanation
Indices: 32074104--32074129 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32074094 ATTCACCAAT
32074104 ATAAAAATATTTA
1 ATAAAAATATTTA
32074117 ATAAAAATATTTA
1 ATAAAAATATTTA
32074130 CGGGCTTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATAAAAATATTTA
Found at i:32077089 original size:138 final size:137
Alignment explanation
Indices: 32076921--32077342 Score: 646
Period size: 138 Copynumber: 3.1 Consensus size: 137
32076911 AGAGAACATA
** *
32076921 AATATAATTAATATATGAATTTGAGCCATACAAAATATTAATTGTATATAATTTACTAAATTTAT
1 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTT-T
* * * *
32076986 TAATATAAATAGTTATATTAATTAATTTCGGGCAAAATATAAAAGACATGGAAATTAATATTCTT
65 TAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGATATGGAAATTAATATTCTT
32077051 TTGGAAAG
130 TTGGAAAG
* * *
32077059 AATATAATTAATACATGAATTTGATTCATACAAAATATTAATTATATATATTTTACTGAACTTTT
1 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACT-AAATTTT
* * *
32077124 TAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGATATGAAAATTAATTTTCTT
65 TAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGATATGGAAATTAATATTCTT
32077189 TTGGAAAG
130 TTGGAAAG
* * *
32077197 AATATAATTAATATATGAATATGATTCATACAAAATATTAATTGTATATATTTTTACCAATTTTT
1 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATA-TTTTACTAA-ATTT
* *
32077262 TTAATATAAACAATTATATTAATTAGTTTTGGTCAAAATATAAAAGATATGGAAATTAATATTCT
64 TTAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGATATGGAAATTAATATTCT
32077327 TTTGGAAAG
129 TTTGGAAAG
32077336 AATATAA
1 AATATAA
32077343 ATCCTTTTTC
Statistics
Matches: 258, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
138 168 0.65
139 90 0.35
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (137 bp):
AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTTT
AATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGATATGGAAATTAATATTCTTT
TGGAAAG
Found at i:32077123 original size:71 final size:70
Alignment explanation
Indices: 32077048--32077250 Score: 159
Period size: 67 Copynumber: 2.9 Consensus size: 70
32077038 AATTAATATT
32077048 CTTTTGGAAAGAATATAATTAATACATGAATTTGATTCATACAAAATATTAATTATATATATTTT
1 CTTTTGGAAAGAATATAATTAATA-ATGAATTTGATTCATACAAAATATTAATTATATATATTTT
*
32077113 ACTGAA
65 AATGAA
* * * * * * ** *
32077119 CTTTT-TAATATAA-ACAATT-AT-ATTAA-TTAATTTCAGT-CAAAATATAAAAGATATGA-AA
1 CTTTTGGAA-AGAATATAATTAATAATGAATTTGA-TTCA-TACAAAATATTAATTATAT-ATAT
* ***
32077177 ATTAATTTT
62 TTTAATGAA
* *
32077186 CTTTTGGAAAGAATATAATTAATATATGAATATGATTCATACAAAATATTAATTGTATATATTTT
1 CTTTTGGAAAGAATATAATTAATA-ATGAATTTGATTCATACAAAATATTAATTATATATATTTT
32077251 TACCAATTTT
Statistics
Matches: 94, Mismatches: 26, Indels: 24
0.65 0.18 0.17
Matches are distributed among these distances:
66 3 0.03
67 35 0.37
68 9 0.10
69 4 0.04
70 9 0.10
71 32 0.34
72 2 0.02
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (70 bp):
CTTTTGGAAAGAATATAATTAATAATGAATTTGATTCATACAAAATATTAATTATATATATTTTA
ATGAA
Found at i:32078451 original size:33 final size:33
Alignment explanation
Indices: 32078396--32078469 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
32078386 ACATCCATAG
* ** *
32078396 AGATAGTCCGCTGGGATGGTAAATACAAAACAA
1 AGATAGTCCGCTAGGACAGTAAACACAAAACAA
*
32078429 AGATAGTCCTCTAGGACAGTAAACACAAAACAA
1 AGATAGTCCGCTAGGACAGTAAACACAAAACAA
*
32078462 ACATAGTC
1 AGATAGTC
32078470 TATGGGGACA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.18
Consensus pattern (33 bp):
AGATAGTCCGCTAGGACAGTAAACACAAAACAA
Found at i:32078488 original size:33 final size:33
Alignment explanation
Indices: 32078415--32078493 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 33
32078405 GCTGGGATGG
* * * *
32078415 TAAATACAAAACAAAGATAGTCCTCTAGGACAG
1 TAAACACAAAACAAACATAGTCCTATAGGACAA
*
32078448 TAAACACAAAACAAACATAGT-CTATGGGGACAA
1 TAAACACAAAACAAACATAGTCCTAT-AGGACAA
* *
32078481 TAGACACATAACA
1 TAAACACAAAACA
32078494 GAGGTATTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
32 3 0.08
33 35 0.92
ACGTcount: A:0.51, C:0.19, G:0.14, T:0.16
Consensus pattern (33 bp):
TAAACACAAAACAAACATAGTCCTATAGGACAA
Found at i:32080346 original size:29 final size:29
Alignment explanation
Indices: 32080312--32080443 Score: 167
Period size: 29 Copynumber: 4.6 Consensus size: 29
32080302 TAATCGATCA
* *
32080312 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATATAATTTAAGCT
* *
32080341 CGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTTAAGCT
* **
32080370 CGCACACTTAGTGCCATGTAATTTAAATT
1 CGCACACTTAGTGCCATATAATTTAAGCT
*
32080399 TGCACACTTAGTGCCATAT-ATTTCAAGCT
1 CGCACACTTAGTGCCATATAATTT-AAGCT
*
32080428 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32080444 ATCTTGTCAC
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 4 0.04
29 87 0.96
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAATTTAAGCT
Found at i:32080386 original size:58 final size:59
Alignment explanation
Indices: 32080312--32080443 Score: 189
Period size: 58 Copynumber: 2.3 Consensus size: 59
32080302 TAATCGATCA
* *
32080312 CGCACACTTAGTGCCATGTGATTTAAGCTCGCACACATAGTGCCATATAATTT-AAG-TT
1 CGCACACTTAGTGCCATGTAATTTAAACTCGCACACATAGTGCCATAT-ATTTCAAGCTT
* * *
32080370 CGCACACTTAGTGCCATGTAATTTAAATTTGCACACTTAGTGCCATATATTTCAAGCTT
1 CGCACACTTAGTGCCATGTAATTTAAACTCGCACACATAGTGCCATATATTTCAAGCTT
32080429 -GCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32080444 ATCTTGTCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
57 4 0.06
58 61 0.91
59 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (59 bp):
CGCACACTTAGTGCCATGTAATTTAAACTCGCACACATAGTGCCATATATTTCAAGCTT
Found at i:32088255 original size:29 final size:29
Alignment explanation
Indices: 32088221--32088352 Score: 176
Period size: 29 Copynumber: 4.6 Consensus size: 29
32088211 TAATCGATCA
* *
32088221 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATATAATTTAAGCT
* *
32088250 CGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTTAAGCT
* **
32088279 CGCACACTTAGTGCCATGTAATTTAAATT
1 CGCACACTTAGTGCCATATAATTTAAGCT
32088308 CGCACACTTAGTGCCATAT-ATTTCAAGCT
1 CGCACACTTAGTGCCATATAATTT-AAGCT
*
32088337 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32088353 ATCTTGTCAC
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 4 0.04
29 87 0.96
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAATTTAAGCT
Found at i:32088297 original size:58 final size:59
Alignment explanation
Indices: 32088221--32088352 Score: 198
Period size: 58 Copynumber: 2.3 Consensus size: 59
32088211 TAATCGATCA
* *
32088221 CGCACACTTAGTGCCATGTGATTTAAGCTCGCACACATAGTGCCATATAATTT-AAG-TT
1 CGCACACTTAGTGCCATGTAATTTAAACTCGCACACATAGTGCCATAT-ATTTCAAGCTT
* *
32088279 CGCACACTTAGTGCCATGTAATTTAAATTCGCACACTTAGTGCCATATATTTCAAGCTT
1 CGCACACTTAGTGCCATGTAATTTAAACTCGCACACATAGTGCCATATATTTCAAGCTT
32088338 -GCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32088353 ATCTTGTCAC
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
57 4 0.06
58 62 0.91
59 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (59 bp):
CGCACACTTAGTGCCATGTAATTTAAACTCGCACACATAGTGCCATATATTTCAAGCTT
Found at i:32093832 original size:11 final size:11
Alignment explanation
Indices: 32093806--32093866 Score: 56
Period size: 11 Copynumber: 5.6 Consensus size: 11
32093796 TGAAAATTGG
*
32093806 AAATAGAAATAA
1 AAATA-AAAGAA
32093818 AAATAAAAGAA
1 AAATAAAAGAA
32093829 AAAT-AAA-AA
1 AAATAAAAGAA
**
32093838 AAGGAAAAGAA
1 AAATAAAAGAA
32093849 AAAT-AAAGTAA
1 AAATAAAAG-AA
32093860 AAATAAA
1 AAATAAA
32093867 TGGACTCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
9 4 0.10
10 10 0.25
11 19 0.47
12 7 0.17
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.11
Consensus pattern (11 bp):
AAATAAAAGAA
Found at i:32103199 original size:27 final size:27
Alignment explanation
Indices: 32103169--32103239 Score: 108
Period size: 26 Copynumber: 2.7 Consensus size: 27
32103159 TCGCCCTTAG
32103169 GGGTATTTCGGTAATTTTACAAGTCGA
1 GGGTATTTCGGTAATTTTACAAGTCGA
* *
32103196 GGGTATTTCGGTAA-TTTATAGGTCGA
1 GGGTATTTCGGTAATTTTACAAGTCGA
*
32103222 GGGTATTTTGGTAATTTT
1 GGGTATTTCGGTAATTTT
32103240 CCTTTATTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 23 0.57
27 17 0.43
ACGTcount: A:0.23, C:0.07, G:0.28, T:0.42
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAGTCGA
Found at i:32103570 original size:28 final size:29
Alignment explanation
Indices: 32103533--32103605 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 29
32103523 AAGTCTACAT
*
32103533 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
32103561 TCATTCATATGGCCCACTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
32103590 ACATTCATATGACCCA
1 ACATTCATATGGCCCA
32103606 TATGGCTTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 22 0.55
29 18 0.45
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.22
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:32107585 original size:18 final size:19
Alignment explanation
Indices: 32107564--32107601 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
32107554 TTCAATTCTA
32107564 ATTTGACCCAAAA-TATTT
1 ATTTGACCCAAAATTATTT
*
32107582 ATTTTACCCAAAATTATTT
1 ATTTGACCCAAAATTATTT
32107601 A
1 A
32107602 AAACTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (19 bp):
ATTTGACCCAAAATTATTT
Found at i:32116803 original size:46 final size:46
Alignment explanation
Indices: 32116736--32116998 Score: 186
Period size: 46 Copynumber: 5.7 Consensus size: 46
32116726 GTGTTGATAA
*
32116736 CATGTCCTAGACATGGTCTTACACTGGCTCATATCTC-AAGTCAATC
1 CATGTCCTAGACAT-GTCTTACACTGGCTCATATCTCGAAGTCAATG
* * * *
32116782 CATGTCCTAGACATGTTCTTACACTGACT-ATCATCTCGTAGCCGATG
1 CATGTCCTAGACATG-TCTTACACTGGCTCAT-ATCTCGAAGTCAATG
* * ** *
32116829 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGT-AGATG
1 CATGTCCTAGACATGTCTTACACTGGCTCATATCTCGAAGTCA-ATG
* * *
32116875 CATGTCCTAGACATGTCTTACACTAGCTC-TCGTCTC-AA-TACCGATG
1 CATGTCCTAGACATGTCTTACACTGGCTCAT-ATCTCGAAGT--CAATG
* *
32116921 CCATGTTCC-AGACATGGTCTTACACTGGTTCTCATAATGT-G--GCCAATG
1 -CATG-TCCTAGACAT-GTCTTACACTGG--CTCAT-ATCTCGAAGTCAATG
* *
32116969 CATGTCCCAGACATGTCTTACACTAGCTCA
1 CATGTCCTAGACATGTCTTACACTGGCTCA
32116999 CAAACAAATG
Statistics
Matches: 173, Mismatches: 26, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
44 5 0.03
45 4 0.02
46 100 0.58
47 40 0.23
48 18 0.10
50 3 0.02
51 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTGGCTCATATCTCGAAGTCAATG
Found at i:32116921 original size:92 final size:94
Alignment explanation
Indices: 32116736--32116948 Score: 258
Period size: 93 Copynumber: 2.3 Consensus size: 94
32116726 GTGTTGATAA
* *
32116736 CATGTCCTAGACATGGTCTTACACTGGCTCATATCTCAAGTCAATCCATGTCCTAGACATGTTCT
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCAATCCATGTCCTAGACATGTTCT
*
32116801 TACACTGACTATCATCTCGTAGCCGATG-
66 TACACTGACTATCATCTCATAGCCGATGC
* * * *
32116829 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGT-AGATGCATGTCCTAGACATG-T
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AAGTCA-ATCCATGTCCTAGACATGTT
* *
32116891 CTTACACT-AGCTCTCGTCTCAATA-CCGATGC
64 CTTACACTGA-CTATCATCTC-ATAGCCGATGC
*
32116922 CATGTTCCAGACATGGTCTTACACTGG
1 CATGTCCCAGACATGGTCTTACACTGG
32116949 TTCTCATAAT
Statistics
Matches: 104, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
91 1 0.01
92 43 0.41
93 48 0.46
94 12 0.12
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCAATCCATGTCCTAGACATGTTCT
TACACTGACTATCATCTCATAGCCGATGC
Found at i:32116987 original size:140 final size:139
Alignment explanation
Indices: 32116736--32116992 Score: 335
Period size: 140 Copynumber: 1.8 Consensus size: 139
32116726 GTGTTGATAA
* *
32116736 CATGTCCTAGACATGGTCTTACACTGGCTCATATCTCAAGTCAATCCATGTCCTAGACATGTTCT
1 CATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAGTCAATCCATGTCCTAGACATGGTCT
* *
32116801 TACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG
66 TACACTGACTATCATATCGTAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG
32116866 AGGTAGATG
131 AGGTAGATG
* *
32116875 CATGTCCTAGACAT-GTCTTACACTAGCTC-TCGTCTCAA-TACCGATGCCATGTTCC-AGACAT
1 CATGTCCTAGACATGGTCTTACACTAGCTCAT-ATCTCAAGT--CAAT-CCATG-TCCTAGACAT
** * *
32116936 GGTCTTACACTGGTTCTCATAAT-GTGGCCAATGCATGTCCCAGACATGTCTTACACT
61 GGTCTTACACTGACTATCAT-ATCGTAGCCAATGCATGTCCCAGACATGTCTTACACT
32116993 AGCTCACAAA
Statistics
Matches: 102, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
137 2 0.02
138 20 0.20
139 17 0.17
140 59 0.58
141 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (139 bp):
CATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAGTCAATCCATGTCCTAGACATGGTCT
TACACTGACTATCATATCGTAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG
AGGTAGATG
Found at i:32117498 original size:288 final size:288
Alignment explanation
Indices: 32116982--32117559 Score: 1147
Period size: 288 Copynumber: 2.0 Consensus size: 288
32116972 GTCCCAGACA
32116982 TGTCTTACACTAGCTCACAAACAAATGACCCAAACGTCATGGCATGGATATCCGATTTACTTCCT
1 TGTCTTACACTAGCTCACAAACAAATGACCCAAACGTCATGGCATGGATATCCGATTTACTTCCT
32117047 AAGGTTACAACGGAATTTCCACTGTCTCAATTATCCTTATACATTCTCAATTTCACAACCAAACA
66 AAGGTTACAACGGAATTTCCACTGTCTCAATTATCCTTATACATTCTCAATTTCACAACCAAACA
32117112 GTTCATGCTATATTAACTCAATACAATTCAAAACATACATTAACAATGTAGTTGTATTATTTACA
131 GTTCATGCTATATTAACTCAATACAATTCAAAACATACATTAACAATGTAGTTGTATTATTTACA
32117177 TACAACTTACCTCAAATTACAAAATGTGGCGACTAGTCAATTTAGTCGATTTGCTTGGCTTTCCC
196 TACAACTTACCTCAAATTACAAAATGTGGCGACTAGTCAATTTAGTCGATTTGCTTGGCTTTCCC
32117242 CTGGTCTAGGCCCGAATTTGGTATTTCT
261 CTGGTCTAGGCCCGAATTTGGTATTTCT
32117270 TGTCTTACACTAGCTCACAAACAAATGACCCAAACGTCATGGCATGGATATCCGATTTACTTCCT
1 TGTCTTACACTAGCTCACAAACAAATGACCCAAACGTCATGGCATGGATATCCGATTTACTTCCT
32117335 AAGGTTACAACGGAATTTCCACTGTCTCAATTATCCTTATACATTCTCAATTTCACAACCAAACA
66 AAGGTTACAACGGAATTTCCACTGTCTCAATTATCCTTATACATTCTCAATTTCACAACCAAACA
32117400 GTTCATGCTATATTAACTCAATACAATTCAAAACATACATTAACAATGTAGTTGTATTATTTACA
131 GTTCATGCTATATTAACTCAATACAATTCAAAACATACATTAACAATGTAGTTGTATTATTTACA
*
32117465 TACAACTTACCTCAAATTACAAAATGTGGCGACTAGTTAATTTAGTCGATTTGCTTGGCTTTCCC
196 TACAACTTACCTCAAATTACAAAATGTGGCGACTAGTCAATTTAGTCGATTTGCTTGGCTTTCCC
32117530 CTGGTCTAGGCCCGAATTTGGTATTTCT
261 CTGGTCTAGGCCCGAATTTGGTATTTCT
32117558 TG
1 TG
32117560 ATCTATAATA
Statistics
Matches: 289, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
288 289 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (288 bp):
TGTCTTACACTAGCTCACAAACAAATGACCCAAACGTCATGGCATGGATATCCGATTTACTTCCT
AAGGTTACAACGGAATTTCCACTGTCTCAATTATCCTTATACATTCTCAATTTCACAACCAAACA
GTTCATGCTATATTAACTCAATACAATTCAAAACATACATTAACAATGTAGTTGTATTATTTACA
TACAACTTACCTCAAATTACAAAATGTGGCGACTAGTCAATTTAGTCGATTTGCTTGGCTTTCCC
CTGGTCTAGGCCCGAATTTGGTATTTCT
Found at i:32123302 original size:40 final size:40
Alignment explanation
Indices: 32123218--32123402 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
32123208 TCGAATGATG
* *
32123218 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
32123257 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
32123298 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
32123337 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32123376 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32123403 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:32123354 original size:79 final size:80
Alignment explanation
Indices: 32123218--32123434 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 80
32123208 TCGAATGATG
* * **
32123218 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTG-G-TACGAGTTACTATATCCGGGTTAAGATCCGAAGGCAT
32123281 TTGTGCGAGTTACTA-A
64 TTGTGCGAGTTACTATA
*
32123297 TTCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
32123360 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* * * * *
32123377 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ATTCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTA-CTATATCCGGGTTAAGATCCGAAGG
32123435 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 16
0.82 0.08 0.11
Matches are distributed among these distances:
77 2 0.02
78 8 0.07
79 72 0.61
80 37 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:32127281 original size:17 final size:17
Alignment explanation
Indices: 32127256--32127295 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
32127246 AGCCATAATA
*
32127256 GAGATTCATTCAATCAT
1 GAGAATCATTCAATCAT
32127273 GAGAATCATTCAATCAT
1 GAGAATCATTCAATCAT
32127290 GAGAAT
1 GAGAAT
32127296 GCATCTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (17 bp):
GAGAATCATTCAATCAT
Found at i:32128934 original size:48 final size:48
Alignment explanation
Indices: 32128858--32128996 Score: 201
Period size: 48 Copynumber: 2.9 Consensus size: 48
32128848 TACCACTGTT
*
32128858 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* *
32128906 ATACATGTAACGTGGTGCTAAGTGGATATGCCAC-AGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGA-TTACACATATTG
* * *
32128954 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
32128997 GTAACGTGGT
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
47 33 0.41
48 48 0.59
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:32129011 original size:38 final size:38
Alignment explanation
Indices: 32128960--32129036 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
32128950 ATTGATTCAT
32128960 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
32128998 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
32129036 T
1 T
32129037 TAATTTGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:32131195 original size:47 final size:46
Alignment explanation
Indices: 32131126--32131387 Score: 239
Period size: 46 Copynumber: 5.6 Consensus size: 46
32131116 GCCGATACCG
*
32131126 TGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAAGTCGATGTCA
1 TGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCAAGCCGATG-CA
** * *
32131173 TGTCCCAGACATGGTCTTACACTAAAT-ATCATCTCATAGGCAATGCA
1 TGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCA-AGCCGATGCA
* * * *
32131220 TGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCTCATCATCTC-AAGCCGATGCA
*
32131266 TGTCCCAGACATGTCTTACACTAGCTC-TCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAGCTCATCATCTCAA-GCCGATG-CA
* * * * *
32131313 TGTCCTAGACATGGTCTTACACTGGCTTTCATAATGTGAA--CGATGCA
1 TGTCCCAGACAT-GTCTTACACTAGC--TCATCATCTCAAGCCGATGCA
* *
32131360 TGTTCGAGACATGTCTTACACTAGCTCA
1 TGTCCCAGACATGTCTTACACTAGCTCA
32131388 CAAACAAATA
Statistics
Matches: 181, Mismatches: 23, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
44 3 0.02
45 1 0.01
46 75 0.41
47 72 0.40
48 23 0.13
50 2 0.01
51 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTAGCTCATCATCTCAAGCCGATGCA
Found at i:32131265 original size:46 final size:47
Alignment explanation
Indices: 32131116--32131340 Score: 203
Period size: 47 Copynumber: 4.8 Consensus size: 47
32131106 TGGGTAAGGT
* * * * *
32131116 GCCGATACCGTGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCAG
* * **
32131163 GTCGATGTCATGTCCCAGACATGGTCTTACACTA-AATATCATCTCATAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTA-CATCTC--AG
* * *
32131212 G-CAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTC-AG
* *
32131257 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATCTC-AG
* *
32131303 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTT
32131341 TCATAATGTG
Statistics
Matches: 149, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
45 3 0.02
46 61 0.41
47 66 0.44
48 17 0.11
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCAG
Found at i:32134001 original size:55 final size:53
Alignment explanation
Indices: 32133874--32134062 Score: 200
Period size: 55 Copynumber: 3.5 Consensus size: 53
32133864 AACTTACCAT
* * *
32133874 TGCCATGTCATGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* ** *
32133927 TGTCATGCCTTGGGATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
** * * * * *
32133982 TGCCATATCTTGACATGGTCTTACATGATTTCCTTGACTTATAAAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
32134036 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
32134063 ATATCCTTAT
Statistics
Matches: 111, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.30
54 34 0.31
55 40 0.36
56 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:32134056 original size:54 final size:54
Alignment explanation
Indices: 32133864--32134070 Score: 202
Period size: 53 Copynumber: 3.8 Consensus size: 54
32133854 TTCCTTTTTG
* * * * * *
32133864 AACTTACCATTGCCATGTCATGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAA
* ** ** *
32133917 AACTCACCAATGTCATGCCTTGGGATGGTCTTACATGGGA-CCTTTGCCTTATAGT
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA-A
* ** * *
32133972 AACTCATCAATGCCATATCTTGACATGGTCTTACATGATTTCCTTGACTTATAA
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAA
* * *
32134026 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
32134071 ATCTTACCAA
Statistics
Matches: 125, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
52 2 0.02
53 41 0.33
54 40 0.32
55 40 0.32
56 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (54 bp):
AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAA
Found at i:32141083 original size:20 final size:19
Alignment explanation
Indices: 32141058--32141095 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
32141048 TAGCAATTAA
32141058 ATAACTAATAAACAATTTAG
1 ATAACTAATAAAC-ATTTAG
32141078 ATAACTAATAAACATTTA
1 ATAACTAATAAACATTTA
32141096 TAAATCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.55, C:0.11, G:0.03, T:0.32
Consensus pattern (19 bp):
ATAACTAATAAACATTTAG
Found at i:32155152 original size:29 final size:28
Alignment explanation
Indices: 32155110--32155212 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
32155100 GTGACGAGAT
* *
32155110 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
32155139 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
32155168 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
32155197 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32155213 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:32163116 original size:29 final size:28
Alignment explanation
Indices: 32163074--32163176 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
32163064 GTGACGAGAT
* *
32163074 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
32163103 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
32163132 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
32163161 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32163177 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:32175514 original size:17 final size:17
Alignment explanation
Indices: 32175492--32175530 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
32175482 TACATATTTT
*
32175492 AAGTCATCGTTTTTTCG
1 AAGTCATCATTTTTTCG
32175509 AAGTCATCATTTTTTCG
1 AAGTCATCATTTTTTCG
32175526 AAGTC
1 AAGTC
32175531 CACGAATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.44
Consensus pattern (17 bp):
AAGTCATCATTTTTTCG
Found at i:32176087 original size:27 final size:27
Alignment explanation
Indices: 32176057--32176109 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
32176047 TTCTTTTCCT
*
32176057 TAGATTACCA-AAAGAGCTTCTATTTCA
1 TAGATTACCACAAAG-GCTTCCATTTCA
*
32176084 TAGATTTCCACAAAGGCTTCCATTTC
1 TAGATTACCACAAAGGCTTCCATTTC
32176110 TTGGTGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (27 bp):
TAGATTACCACAAAGGCTTCCATTTCA
Found at i:32187293 original size:48 final size:48
Alignment explanation
Indices: 32187227--32187615 Score: 679
Period size: 48 Copynumber: 8.1 Consensus size: 48
32187217 GCGGAAATTG
32187227 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
32187275 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
32187323 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
32187371 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAAAGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
32187419 ATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
32187467 ATGTATGAGATAAGTATATGTGGTAAAGCTGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
32187515 ATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * * *
32187563 ATGTATGAGATACGTATATGTGGTAAAGCCGAATGGATAGTGTTAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
32187611 ATGTA
1 ATGTA
32187616 GGCGATGTGT
Statistics
Matches: 324, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 324 1.00
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.30
Consensus pattern (48 bp):
ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:32187907 original size:37 final size:37
Alignment explanation
Indices: 32187762--32187906 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
32187752 GGAAATATAT
32187762 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
32187799 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
32187836 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
32187873 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
32187907 TCATCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32190085 original size:93 final size:93
Alignment explanation
Indices: 32189977--32190147 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
32189967 GCCCCTAAGT
* * * * *
32189977 GAACTCGGGCTCAACTCAACGAGCTCGGGCGTTAGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
*
32190042 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
32190070 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
*
32190135 TGAGTTCGGATGC
66 CGAGTTCGGATGC
32190148 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:32190134 original size:46 final size:45
Alignment explanation
Indices: 32189972--32190141 Score: 139
Period size: 46 Copynumber: 3.7 Consensus size: 45
32189962 AACCCGCCCC
* * * * *
32189972 TAAGTGAACTCGGGCTCAACTCAACGAGCTCGGGCGTTAGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATT-GCATCCA
* * * * *
32190018 TAAGTGAACTTGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAG-TT-CA-GAC-A-TTGCATCCA
* *
32190066 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATT-GCATCCA
*
32190111 TAAGTGAACTCGGACTCAACTCAATGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
32190142 GGATGCTCAA
Statistics
Matches: 96, Mismatches: 19, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 53 0.55
47 23 0.24
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTGCATCCA
Found at i:32193777 original size:15 final size:15
Alignment explanation
Indices: 32193753--32193800 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
32193743 AGGAAACCGA
32193753 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
32193768 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
32193782 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
32193798 ATA
1 ATA
32193801 CGATACTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32196863 original size:93 final size:93
Alignment explanation
Indices: 32196756--32196926 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
32196746 GCCCCTAAGT
* *
32196756 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32196821 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
32196849 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
32196914 TGAGTTCGGATGC
66 CGAGTTCGGATGC
32196927 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:32196923 original size:46 final size:46
Alignment explanation
Indices: 32196751--32196923 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
32196741 AACCCGCCCC
* * *
32196751 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
32196797 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
32196845 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
32196890 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32196924 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:32198371 original size:45 final size:42
Alignment explanation
Indices: 32198306--32198428 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 42
32198296 CGCCCATAAG
*
32198306 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT-C
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A--TACATAC
* * *
32198350 TCGAACTCGGACTCAACTCAACGAGTTCGGACGCGCATCCATAAG
1 T-GAACTCGGACTCAACTCAACGAGTTCGGATGC-CATACAT-AC
32198395 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC
32198429 CAATATCCAG
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
43 5 0.07
44 32 0.46
45 32 0.46
46 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (42 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCATACATAC
Found at i:32198415 original size:44 final size:45
Alignment explanation
Indices: 32198299--32198424 Score: 161
Period size: 45 Copynumber: 2.8 Consensus size: 45
32198289 TGTAACCCGC
* *
32198299 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAG-T
* *
32198345 ACAT--CTCGAACTCGGACTCAACTCAACGAGTTCGGACGCGC-A-T
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGC-CTAGT
32198388 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32198425 TGCCCAATAT
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
43 4 0.06
44 30 0.43
45 32 0.46
46 4 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGT
Found at i:32198441 original size:44 final size:43
Alignment explanation
Indices: 32198304--32198441 Score: 145
Period size: 44 Copynumber: 3.1 Consensus size: 43
32198294 CCCGCCCATA
* * *
32198304 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-TAC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATAT-C
* * * *
32198347 ATCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCGC-ATCCATA
1 A-GT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAT--ATC
32198393 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATAT-C
32198437 AGTGA
1 AGTGA
32198442 CATGTCACTT
Statistics
Matches: 77, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
43 3 0.04
44 39 0.51
45 33 0.43
46 1 0.01
47 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATC
Found at i:32200830 original size:15 final size:15
Alignment explanation
Indices: 32200808--32200884 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
32200798 AAGAAACCGA
32200808 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
32200823 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
32200836 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
32200851 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
32200867 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32200882 ATA
1 ATA
32200885 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32200841 original size:29 final size:29
Alignment explanation
Indices: 32200798--32200884 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
32200788 CAAAGATAAC
32200798 AAGAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCAGAATAAAGAAATCCAAGATA
*
32200826 GAGAAACCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCAGAATAAAGAAATCCAAG-ATA
* * *
32200855 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCAGAATAAAGAAATCCAAGATA
32200885 CGATACTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 9 0.18
29 20 0.40
30 19 0.38
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCAGAATAAAGAAATCCAAGATA
Found at i:32203828 original size:45 final size:43
Alignment explanation
Indices: 32203764--32203938 Score: 199
Period size: 45 Copynumber: 3.9 Consensus size: 43
32203754 TGTAACCCGC
32203764 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGAGTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGAGT-GCAT
32203809 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-TGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGTG-C-A--T
* *** *
32203855 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGA-G--TGCAT
*
32203902 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32203939 TGCCCAATAT
Statistics
Matches: 112, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 4 0.04
45 34 0.30
46 34 0.30
47 33 0.29
49 1 0.01
50 1 0.01
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (43 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGTGCAT
Found at i:32203886 original size:47 final size:47
Alignment explanation
Indices: 32203765--32203942 Score: 186
Period size: 46 Copynumber: 3.9 Consensus size: 47
32203755 GTAACCCGCC
* * * *
32203765 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGA-G--TCGCATC
1 CATAACTGAACTCGGACTCAACTCAACGAGTTC-GGATGCCTAGCATA
* * *
32203810 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTA
1 CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATA
** * * *
32203856 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACG-CTTGCATC
1 CATAACT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATA
*
32203903 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
32203943 CAATATCCAG
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
44 3 0.03
45 34 0.30
46 38 0.34
47 37 0.33
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATA
Found at i:32203930 original size:93 final size:92
Alignment explanation
Indices: 32203772--32203942 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 92
32203762 GCCCATAAGT
32203772 GAACTCGGACTCAACTCAACGAGCTCGGGAGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGGAGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
32203837 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
* *
32203864 GAACTCGGACTCAACTCAACGAGTTC-GGACGCTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGGA-G-TCGCATCCATAAGTGAACTCGGACTCAACTCA
*
32203928 ACGAGTTCGGATGCC
64 ACGAGCTCGGATGCC
32203943 CAATATCCAG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
91 3 0.04
92 26 0.35
93 45 0.61
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGAGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:32209855 original size:30 final size:29
Alignment explanation
Indices: 32209819--32209943 Score: 189
Period size: 29 Copynumber: 4.3 Consensus size: 29
32209809 AATTCATAAG
32209819 TATGAATGTGATTTGGGCCTAATGGGGCCA
1 TATGAATGTGATTTGGGCCTAAT-GGGCCA
32209849 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
32209878 TACGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* * *
32209907 TACGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
32209935 TATGGATGT
1 TATGAATGT
32209944 ATGTAGACTT
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
28 22 0.25
29 44 0.49
30 23 0.26
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:32209894 original size:59 final size:57
Alignment explanation
Indices: 32209822--32209936 Score: 185
Period size: 59 Copynumber: 2.0 Consensus size: 57
32209812 TCATAAGTAT
* *
32209822 GAATGTGATTTGGGCCTAATGGGGCCATATGAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAAT-GGGCCATACGAATGAGA-TTGGGCCTAATGGGCCATAC
*
32209881 GAATGTGATTTGGGCCTAATGGGCCATACGAATGAGATTGGGCCTAGTGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATACGAATGAGATTGGGCCTAATGGGCCATA
32209937 TGGATGTATG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
57 18 0.34
58 15 0.28
59 20 0.38
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (57 bp):
GAATGTGATTTGGGCCTAATGGGCCATACGAATGAGATTGGGCCTAATGGGCCATAC
Found at i:32214741 original size:34 final size:34
Alignment explanation
Indices: 32214658--32214741 Score: 116
Period size: 34 Copynumber: 2.5 Consensus size: 34
32214648 GTTTCAGTTA
* * *
32214658 GGGCCTTAGCCCATATCT-GTAACAGTAGCAGTCT
1 GGGCCTGAGCCCAT-TTTAGTAACAATAGCAGTCT
32214692 GGGCCTGAGCCCATTTTAGTAACAATAGCAGTCT
1 GGGCCTGAGCCCATTTTAGTAACAATAGCAGTCT
*
32214726 GGGCCTGAGCGCATTT
1 GGGCCTGAGCCCATTT
32214742 CAATAATAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
33 2 0.04
34 43 0.96
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (34 bp):
GGGCCTGAGCCCATTTTAGTAACAATAGCAGTCT
Found at i:32216735 original size:11 final size:11
Alignment explanation
Indices: 32216719--32216757 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32216709 AGGAGATATT
32216719 TTATTATTTTA
1 TTATTATTTTA
*
32216730 TTATTATTTCA
1 TTATTATTTTA
* *
32216741 TTACTATTATA
1 TTATTATTTTA
32216752 TTATTA
1 TTATTA
32216758 ATTATTTAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:32219332 original size:13 final size:13
Alignment explanation
Indices: 32219316--32219340 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32219306 AAACGAGGTG
32219316 AGTTTACAAAAAT
1 AGTTTACAAAAAT
32219329 AGTTTACAAAAA
1 AGTTTACAAAAA
32219341 CTAAGTGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (13 bp):
AGTTTACAAAAAT
Found at i:32219523 original size:6 final size:6
Alignment explanation
Indices: 32219503--32219621 Score: 84
Period size: 6 Copynumber: 19.3 Consensus size: 6
32219493 AAGAAACATT
* *
32219503 ATCAGA A-CTAGA ATCAAA ATCAGA ATTAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
32219550 GTGACAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGT ATTAGGTA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCA-G-A
32219603 A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
32219622 GTGAATGCAA
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
5 5 0.06
6 72 0.82
7 8 0.09
8 3 0.03
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:32219559 original size:19 final size:19
Alignment explanation
Indices: 32219535--32219618 Score: 83
Period size: 19 Copynumber: 4.8 Consensus size: 19
32219525 GAATTAGAAT
32219535 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
32219554 CAGAATCAG-A--A--T--
1 CAGAATCAGAATCAGGTGA
*
32219566 CAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGGTGA
* * *
32219585 CAGAATCAGTATTAGGTAA
1 CAGAATCAGAATCAGGTGA
32219604 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
32219619 AATGTGAATG
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
12 9 0.17
13 1 0.02
14 1 0.02
15 1 0.02
16 1 0.02
17 1 0.02
18 1 0.02
19 39 0.72
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:32219565 original size:31 final size:31
Alignment explanation
Indices: 32219523--32219593 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
32219513 GAATCAAAAT
*
32219523 CAGAATTAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTGA
*
32219554 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTGA
32219585 CAGAATCAG
1 CAGAATCAG
32219594 TATTAGGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.18
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:32219588 original size:25 final size:25
Alignment explanation
Indices: 32219530--32219621 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 25
32219520 AATCAGAATT
*
32219530 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
32219555 AGAATCAGAATCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGGTAA-C
* * *
32219579 AG-GTGACAGAATCAGTATTAGGTAAC
1 AGAAT--CAGAATCAGAATCAGGTAAC
32219605 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
32219622 GTGAATGCAA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
23 2 0.04
24 3 0.06
25 42 0.79
26 3 0.06
27 3 0.06
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:32219817 original size:27 final size:27
Alignment explanation
Indices: 32219763--32219846 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
32219753 GTAACAGAGT
* * * * *
32219763 CACCAGATATAGATATTATGGTAGAGC
1 CACCAGAAACAGATATTGTGGCAAAGC
*
32219790 CACCAG-AACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATA-TTGTGGCAAAGC
*
32219817 CACTAGAAACAGATATTGTGGCAAAGC
1 CACCAGAAACAGATATTGTGGCAAAGC
32219844 CAC
1 CAC
32219847 TTAACAAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
26 6 0.12
27 34 0.71
28 8 0.17
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (27 bp):
CACCAGAAACAGATATTGTGGCAAAGC
Found at i:32220597 original size:27 final size:27
Alignment explanation
Indices: 32220458--32220598 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 27
32220448 GGGCAAAATG
* * * *
32220458 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* **
32220485 GTAATTCTACCCTACATGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
32220512 GTATTTCTACCCTATAATGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
32220539 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
32220566 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
32220593 ATAATT
1 GTAATT
32220599 TTGTAAATCT
Statistics
Matches: 96, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:32221653 original size:46 final size:46
Alignment explanation
Indices: 32221597--32221824 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
32221587 AGTGTGCTCT
32221597 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
32221643 CTGATCTGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
32221689 TTGGTATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
32221735 GTGATATGAAATGAACAAGACCATGGTTGAAAGATGCCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
32221781 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
32221825 TCATGTCAAA
Statistics
Matches: 163, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 162 0.99
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:32226778 original size:33 final size:33
Alignment explanation
Indices: 32226736--32226808 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
32226726 CAAAAATTCA
*
32226736 ACACGGGTGTGGGACATGGGCGTGTCCCCAAGC
1 ACACGGGTGTGGGACATGGGCATGTCCCCAAGC
32226769 ACACGGGTGTGGGACATGGGCATGTCCCCAAGC
1 ACACGGGTGTGGGACATGGGCATGTCCCCAAGC
32226802 ACACGGG
1 ACACGGG
32226809 CGTGTGCAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.21, C:0.27, G:0.38, T:0.14
Consensus pattern (33 bp):
ACACGGGTGTGGGACATGGGCATGTCCCCAAGC
Found at i:32227945 original size:53 final size:53
Alignment explanation
Indices: 32227885--32227989 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
32227875 ATAAACTGCT
* * * * *
32227885 ATAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGTAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTC
* *
32227938 ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
32227990 AAAAAGGAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTC
Found at i:32233822 original size:40 final size:40
Alignment explanation
Indices: 32233777--32233944 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
32233767 CGGAATACAA
32233777 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
32233817 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
32233857 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
32233897 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
32233937 CCGGATAT
1 CCGGATAT
32233945 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:32241868 original size:40 final size:40
Alignment explanation
Indices: 32241823--32241990 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
32241813 CGGAATACAA
32241823 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
32241863 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
32241903 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
32241943 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
32241983 CCGGATAT
1 CCGGATAT
32241991 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:32245081 original size:49 final size:49
Alignment explanation
Indices: 32245028--32245911 Score: 936
Period size: 49 Copynumber: 17.7 Consensus size: 49
32245018 GATTTTATGC
* * *
32245028 GATGAATGTGAATGTGTATATATATGAGATAAGGCCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
32245077 GATGAATGTGAAAGTGTATATATATGTGATAAGGCGTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
32245126 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
32245175 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *** ****
32245224 GATGAATGTGAAAGTG--TATATATGTGATGAATGTGAAAGTGTATATATGT
1 GATGAATGTGAAAGTGTATATATATGTGAT-AAGGCCTAA-TG-GCCGATGT
* * * * ** *** *
32245274 GAT-AAGGCCT-AATG-GCCGATGTGATGAATGTGA-AAGTGTATATATGTGATAAGGCCT
1 GATGAATG--TGAAAGTG--TATAT-AT--ATGTGATAAG-GCCTA-ATG-GCCGATG--T
* * *
32245331 AATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GAT-G--AATGTGA--AA-GT------GTATATATATGTGATAAGGCCTAATGGCCGATGT
*
32245392 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
32245441 GATGAATGTGAAAGTG--TGTATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
32245488 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
32245537 GATGAATGTGAAAGCGTATATATATGTGATAAGTGATAAGGCCTAATGGTCGATGT
1 GATGAATGTGAAA--GTGTATATA--T-AT--GTGATAAGGCCTAATGGCCGATGT
32245593 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* *
32245642 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
32245691 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
32245740 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* * * *
32245787 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATAT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
32245834 GATGAATGTGAAAGTGTATATATA--TGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
32245881 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAG
32245912 TCCTGAAGGG
Statistics
Matches: 721, Mismatches: 67, Indels: 96
0.82 0.08 0.11
Matches are distributed among these distances:
45 2 0.00
46 4 0.01
47 180 0.25
48 8 0.01
49 393 0.55
50 10 0.01
51 9 0.01
52 1 0.00
53 3 0.00
54 14 0.02
55 10 0.01
56 45 0.06
57 3 0.00
58 6 0.01
59 1 0.00
60 2 0.00
61 5 0.01
62 1 0.00
63 4 0.01
64 3 0.00
65 9 0.01
66 3 0.00
67 2 0.00
68 2 0.00
70 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:32245254 original size:25 final size:25
Alignment explanation
Indices: 32245220--32245323 Score: 115
Period size: 25 Copynumber: 4.3 Consensus size: 25
32245210 CTAATGGCCG
32245220 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
32245245 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
32245270 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
32245292 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
32245317 ATGTGAT
1 ATGTGAT
32245324 AAGGCCTAAT
Statistics
Matches: 60, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
22 7 0.12
23 7 0.12
24 7 0.12
25 39 0.65
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:32245287 original size:121 final size:121
Alignment explanation
Indices: 32245122--32245372 Score: 443
Period size: 121 Copynumber: 2.1 Consensus size: 121
32245112 GTAATGGCCG
32245122 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32245187 AGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-AT
65 A--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATAAT
32245245 ATGTGATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
32245309 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACAT
66 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATA-AT
32245366 ATGTGAT
1 ATGTGAT
32245373 AAGGCCTAAT
Statistics
Matches: 125, Mismatches: 1, Indels: 6
0.95 0.01 0.05
Matches are distributed among these distances:
119 52 0.42
121 56 0.45
123 17 0.14
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.31
Consensus pattern (121 bp):
ATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATAAT
Found at i:32245290 original size:72 final size:73
Alignment explanation
Indices: 32245171--32245468 Score: 294
Period size: 72 Copynumber: 4.1 Consensus size: 73
32245161 CTAATGGCCG
32245171 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32245236 AGTGTATAT
65 AGTGTATAT
32245245 ATGTGATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
32245309 GTGTATAT
66 GTGTATAT
* * * * **
32245317 ATGTGAT-AAGGCCT-AATGGCCGATGTGATGA-ATGTGA-AA-GCGT-AT-ACATATGTGAT-A
1 ATGTGATGAATG--TGAA-AG--G-TGT-AT-ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *** ****
32245374 AGGCCTAA-TG-GCCG
58 ATGTGAAAGTGTATAT
32245388 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32245453 AGTGTGTAT
65 AGTGTATAT
32245462 ATGTGAT
1 ATGTGAT
32245469 AAGGCCTAAT
Statistics
Matches: 177, Mismatches: 28, Indels: 38
0.73 0.12 0.16
Matches are distributed among these distances:
66 1 0.01
67 8 0.05
68 5 0.03
69 4 0.02
70 4 0.02
71 20 0.11
72 74 0.42
73 8 0.05
74 33 0.19
75 2 0.01
76 4 0.02
77 5 0.03
78 8 0.05
79 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (73 bp):
ATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATAT
Found at i:32245296 original size:47 final size:47
Alignment explanation
Indices: 32245245--32245911 Score: 983
Period size: 47 Copynumber: 13.7 Consensus size: 47
32245235 AAGTGTATAT
32245245 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32245292 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32245339 ATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCG
32245388 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
*
32245437 ATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32245484 ATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCG
* *
32245533 ATGTGATGAATGTGAAAGCGTATATATATGTGATAAGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAA--G--TGTATA--T-AT--GTGATAAGGCCTAATGGCCG
32245589 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
32245638 ATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCG
32245687 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
32245736 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
32245783 ATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
32245830 ATATGATGAATGTGAAAGTGTATATATATGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
32245877 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32245912 TCCTGAAGGG
Statistics
Matches: 573, Mismatches: 26, Indels: 42
0.89 0.04 0.07
Matches are distributed among these distances:
47 267 0.47
49 243 0.42
51 14 0.02
52 2 0.00
53 4 0.01
54 7 0.01
56 36 0.06
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:32245355 original size:168 final size:171
Alignment explanation
Indices: 32245073--32245622 Score: 692
Period size: 168 Copynumber: 3.0 Consensus size: 171
32245063 CGAATGGCCG
*
32245073 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCGTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
32245138 AGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTG
65 AG-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTG
32245203 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTATAT
129 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTATAT
32245245 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
32245309 -GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
66 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
32245373 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATAT
131 AAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTATAT
*
32245415 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATG
1 ATGTGAT---G----A------ATGTGA--AA-GTG--A---TATATATGTGATAAGGCCTAATG
* *
32245480 GCCGATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
45 GCCGATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
32245545 TGAAAGCGTATATATATGTGATAAGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGT
109 TGAAAGCG--TATACA--T-AT--GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GT
*
32245610 ATATAT
166 GTATAT
32245616 ATGTGAT
1 ATGTGAT
32245623 AAGGCCTAAT
Statistics
Matches: 335, Mismatches: 10, Indels: 37
0.88 0.03 0.10
Matches are distributed among these distances:
168 93 0.28
170 58 0.17
172 20 0.06
173 1 0.00
177 1 0.00
183 6 0.02
185 2 0.01
186 3 0.01
192 43 0.13
194 48 0.14
196 5 0.01
198 1 0.00
199 2 0.01
201 52 0.16
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (171 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTATAT
Found at i:32245407 original size:217 final size:219
Alignment explanation
Indices: 32245023--32245468 Score: 779
Period size: 217 Copynumber: 2.0 Consensus size: 219
32245013 TTTAGGATTT
* *
32245023 TATGCGATGAATGTGAATGTGTATATATATGAGATAAGGCCGAATGGCCGATGTGATGAATGTGA
1 TATGTGATGAATGTGAAAGTG-ATATATATGAGATAAGGCCGAATGGCCGATGTGATGAATGTGA
* * * *
32245088 AAGTGTATATATATGTGATAAGGCGTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGT
65 AAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGT
32245153 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGC
129 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGC
32245218 CGATGTGATGAATGTGAAAGTGTATA
194 CGATGTGATGAATGTGAAAGTGTATA
* *
32245244 TATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 TATGTGATGAATGTGAAAGTGATATATATGAGATAAGGCCGAATGGCCGATGTGATGAATGTGAA
32245308 AGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGA
66 AGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGA
32245372 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
131 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
*
32245437 ATGTGATGAATGTGAAAGTGTGTA
196 ATGTGATGAATGTGAAAGTGTATA
32245461 TATGTGAT
1 TATGTGAT
32245469 AAGGCCTAAT
Statistics
Matches: 216, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
217 152 0.70
219 45 0.21
221 19 0.09
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (219 bp):
TATGTGATGAATGTGAAAGTGATATATATGAGATAAGGCCGAATGGCCGATGTGATGAATGTGAA
AGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATA
Found at i:32245439 original size:145 final size:145
Alignment explanation
Indices: 32245245--32245911 Score: 1058
Period size: 145 Copynumber: 4.6 Consensus size: 145
32245235 AAGTGTATAT
32245245 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32245308 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
32245373 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
32245388 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32245453 AGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
32245518 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
* * *
32245533 ATGTGATGAATGTGAAAGCGTATATATATGTGATAAGTGATAAGGCCTAATGGTCGATGTGATGA
1 ATGTGATGAATGTGAAA--GTGTGTATA--T-AT--GTGATAAGGCCTAATGGCCGATGTGATGA
32245598 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATAC
59 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATAC
32245663 ATATGTGATAAGGCCTAATGGCCG
122 ATATGTGATAAGGCCTAATGGCCG
32245687 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
32245752 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGAT
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
* *
32245815 AAGGCCGAATGGCCA
131 AAGGCCTAATGGCCG
* * * * * * * *
32245830 ATATGATGAATGTGAAA--GTGTATATATATGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32245893 AGTGTATAAATGTGATAAG
66 AGTGTATATATGTGATAAG
32245912 TCCTGAAGGG
Statistics
Matches: 492, Mismatches: 21, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
141 57 0.12
143 59 0.12
144 3 0.01
145 183 0.37
147 46 0.09
149 3 0.01
150 3 0.01
152 46 0.09
154 92 0.19
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (145 bp):
ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGAT
AAGGCCTAATGGCCG
Found at i:32245443 original size:22 final size:22
Alignment explanation
Indices: 32245415--32245490 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
32245405 GTGTGTATAT
32245415 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
32245437 ATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
32245462 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
32245484 ATGTGAT
1 ATGTGAT
32245491 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:32245622 original size:27 final size:26
Alignment explanation
Indices: 32245533--32245622 Score: 78
Period size: 27 Copynumber: 3.3 Consensus size: 26
32245523 CTAATGGCCG
32245533 ATGTGATGAATGTGAAAGCGTATATAT
1 ATGTGATGAATGTGAAAG-GTATATAT
*
32245560 ATGTGAT-AA-GTGATAAGGCCTA-ATGGT
1 ATGTGATGAATGTGA-AAGG--TATAT-AT
32245587 CGATGTGATGAATGTGAAAGTGTATATAT
1 --ATGTGATGAATGTGAAAG-GTATATAT
32245616 ATGTGAT
1 ATGTGAT
32245623 AAGGCCTAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 20
0.70 0.03 0.27
Matches are distributed among these distances:
25 5 0.10
26 7 0.14
27 17 0.33
29 10 0.20
30 7 0.14
31 5 0.10
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.33
Consensus pattern (26 bp):
ATGTGATGAATGTGAAAGGTATATAT
Found at i:32245729 original size:299 final size:295
Alignment explanation
Indices: 32245272--32245859 Score: 1068
Period size: 299 Copynumber: 2.0 Consensus size: 295
32245262 GTGTATATAT
32245272 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
32245337 CGATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66 CGATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
32245402 AAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTG
131 AAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
32245467 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCC
196 ATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTATACATATGTGATAAGGCCGAATGGCC
* *
32245532 GATGTGATGAATGTGAAAGCGTATATATATGTGATAA
259 AATATGATGAATGTGAAAGCGTATATATATGTGATAA
*
32245569 GTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
32245634 GCCGATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
64 GCCGATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
32245699 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
129 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* *
32245764 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCC
194 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTATACATATGTGATAAGGCCGAATGGCC
*
32245829 AATATGATGAATGTGAAAGTGTATATATATG
259 AATATGATGAATGTGAAAGCGTATATATATG
32245860 ATAGGGCCGA
Statistics
Matches: 281, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
297 93 0.33
298 3 0.01
299 185 0.66
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (295 bp):
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTATACATATGTGATAAGGCCGAATGGCCAA
TATGATGAATGTGAAAGCGTATATATATGTGATAA
Found at i:32250318 original size:40 final size:40
Alignment explanation
Indices: 32250269--32250476 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
32250259 CGGAATACAA
*
32250269 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
32250309 CCGAATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
32250349 CCGGATTTAACAACTTGCACGAATGCCTTTGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
32250389 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * *
32250429 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
32250469 CCGGATAT
1 CCGGATAT
32250477 CATTCAATTG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 137 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:32253930 original size:16 final size:16
Alignment explanation
Indices: 32253911--32253942 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32253901 AATTGTTTTA
32253911 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
32253927 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
32253943 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:32254205 original size:50 final size:50
Alignment explanation
Indices: 32254151--32254486 Score: 325
Period size: 50 Copynumber: 6.7 Consensus size: 50
32254141 CGCTGGTATG
* * *
32254151 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAATCTGGTACA
* * * * * *
32254201 CATAGTATCCTGCACTTAGTACTAGACACGTGACTTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAATCTGGTACA
* * * * **
32254251 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-CGGGTATG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CATA-TCAATCTGGTACA
* * * * *
32254302 CATAGTAGCCTGCACTTAGTAGTACACATGCGACCTATCAATTTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAATCTGGTACA
* * * * * *
32254352 CGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAATCTGGTACA
* * * * * *
32254402 CGTAGTAGCCTACACTTAGTACTACACACGTGATCAAAGTTAA-CGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CATA-TCAATCTGGTACA
*
32254453 CATAGTAGCCTGTACTTAGTACTACACACGTGAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGAC
32254487 TTACAACGGA
Statistics
Matches: 229, Mismatches: 52, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
49 3 0.01
50 152 0.66
51 72 0.31
52 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACATATCAATCTGGTACA
Found at i:32254419 original size:151 final size:151
Alignment explanation
Indices: 32254145--32254480 Score: 591
Period size: 151 Copynumber: 2.2 Consensus size: 151
32254135 GAAGCTCGCT
*
32254145 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTATC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
* *
32254210 CTGCACTTAGTACTAGACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
32254275 CACACGTGATCAAAGTTAACG
131 CACACGTGATCAAAGTTAACG
* * *
32254296 GGTATGCATAGTAGCCTGCACTTAGTAGTACACATGCGACCTATCAATTTGGTACACGTAGTAGC
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
*
32254361 CTGCACTTAGTACTACACATGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
32254426 CACACGTGATCAAAGTTAACG
131 CACACGTGATCAAAGTTAACG
* *
32254447 GGTACGCATAGTAGCCTGTACTTAGTACTACACA
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACA
32254481 CGTGACTTAC
Statistics
Matches: 175, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
151 175 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACGTGATCAAAGTTAACG
Found at i:32254451 original size:101 final size:99
Alignment explanation
Indices: 32254153--32254489 Score: 318
Period size: 101 Copynumber: 3.4 Consensus size: 99
32254143 CTGGTATGCA
* * * * *
32254153 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTATCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGGTACACATAGTAGCCTGCACTT
* * * * *
32254218 AGTACTAGACACGTGACTTAACCATCTGATACACG
66 AGTACTACACACGTGAC-AAATCAACTGGTACACG
* * * **
32254253 TAGTAGCCTGCACTTAGTACTACACACGTGA-TCAA-AGTTAACGGGTATGCATAGTAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACA---ATCTGGTACACATAGTAGCCTGCA
* * * ** *
32254316 CTTAGTAGTACACATGCGACCTATCAATTTGGTACACG
63 CTTAGTACTACACACGTGACAAATCAA-CTGGTACACG
* * * * *
32254354 TAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGGTACACATAGTAGCCTGCACTT
* * * *
32254419 AGTACTACACACGTGATCAAAGTTAACGGGTACGCA
66 AGTACTACACACGTGA-CAAA-TCAACTGGTACACG
*
32254455 TAGTAGCCTGTACTTAGTACTACACACGTGACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTA
32254490 CAACGGATCA
Statistics
Matches: 187, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
98 1 0.01
99 1 0.01
100 65 0.35
101 114 0.61
102 6 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGGTACACATAGTAGCCTGCACTT
AGTACTACACACGTGACAAATCAACTGGTACACG
Found at i:32258176 original size:108 final size:109
Alignment explanation
Indices: 32257986--32258181 Score: 279
Period size: 109 Copynumber: 1.8 Consensus size: 109
32257976 ATTAGGGTTT
* * * *
32257986 AAAGATACCAAGTAAGACCATGCCAAGGCATTTCATTGGTAATTTCTACAAGGCAAGGAAATCAT
1 AAAGATACCAAGTAAGACCATGCCAAGGCATTTCAATGGTAAGTTCTACAAGGCAAGGAAACCAC
32258051 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
66 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
* * * * * *
32258095 AAAGATCCCATGTACGACCATGCCAAGGCATTGT-AATGGTGAGTTC-ATAAGGCAAGGATACCA
1 AAAGATACCAAGTAAGACCATGCCAAGGCATT-TCAATGGTAAGTTCTACAAGGCAAGGAAACCA
32258158 CGTAAGACCATGTCAAGACATGGC
65 CGTAAGACCATGTCAAGACATGGC
32258182 GATAGTAAGT
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
108 37 0.49
109 38 0.50
110 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (109 bp):
AAAGATACCAAGTAAGACCATGCCAAGGCATTTCAATGGTAAGTTCTACAAGGCAAGGAAACCAC
GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
Found at i:32259939 original size:24 final size:24
Alignment explanation
Indices: 32259889--32259942 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
32259879 AATCGAATTT
*
32259889 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
32259913 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
32259937 GCACAC
1 GCACAC
32259943 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:32267734 original size:24 final size:24
Alignment explanation
Indices: 32267684--32267737 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
32267674 AATCGAATTT
*
32267684 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
32267708 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
32267732 GCACAC
1 GCACAC
32267738 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:32274614 original size:27 final size:27
Alignment explanation
Indices: 32274561--32274614 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
32274551 ATGACCAAAA
*
32274561 TGCCCCTAAAGGGTAAAATGACTATTT
1 TGCCCCTAAAGGGTAAAATGAATATTT
**
32274588 TGCCCCTCGAGGGT-AAATGAATGATTT
1 TGCCCCTAAAGGGTAAAATGAAT-ATTT
32274615 GTCTCTGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (27 bp):
TGCCCCTAAAGGGTAAAATGAATATTT
Found at i:32274974 original size:32 final size:32
Alignment explanation
Indices: 32274902--32274986 Score: 116
Period size: 32 Copynumber: 2.7 Consensus size: 32
32274892 TGATATTGAA
* *
32274902 ATGGGCTAGGCCCAACTGATATTGGTTCTGAT
1 ATGGGCTAGGCCCAACTGATATTGATTCTGAG
***
32274934 AAATGCTAGGCCCAACTGATATTGATTCTGAG
1 ATGGGCTAGGCCCAACTGATATTGATTCTGAG
*
32274966 ATGGGCTAGGCCCAATTGATA
1 ATGGGCTAGGCCCAACTGATA
32274987 CTGCAATGGG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATATTGATTCTGAG
Found at i:32284128 original size:32 final size:31
Alignment explanation
Indices: 32284057--32284134 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 31
32284047 TGATATTGAA
* * * *
32284057 ATGGGCTAGGCCCAAGTGATCTTGGTTCTTAT
1 ATGGGCTAGGCCC-AGTGATATTGATTCTGAG
* *
32284089 ATAGGCTAGGCCCAGTTTATATTGATTCTGAG
1 ATGGGCTAGGCCCAG-TGATATTGATTCTGAG
32284121 ATGGGCTAGGCCCA
1 ATGGGCTAGGCCCA
32284135 ATTGATACTG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 2 0.05
32 36 0.95
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (31 bp):
ATGGGCTAGGCCCAGTGATATTGATTCTGAG
Found at i:32284149 original size:26 final size:27
Alignment explanation
Indices: 32284109--32284162 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
32284099 CCCAGTTTAT
*
32284109 ATTGATTCTGAGATGGGCT-AGGCCCA
1 ATTGATACTGAGATGGGCTGAGGCCCA
* *
32284135 ATTGATACTGTGATGGGTTGAGGCCCA
1 ATTGATACTGAGATGGGCTGAGGCCCA
32284162 A
1 A
32284163 ATGTTAATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (27 bp):
ATTGATACTGAGATGGGCTGAGGCCCA
Found at i:32288076 original size:39 final size:39
Alignment explanation
Indices: 32287992--32288182 Score: 303
Period size: 39 Copynumber: 4.9 Consensus size: 39
32287982 TATGGTAACC
* * * *
32287992 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
* *
32288032 CGCACAATTGCCTTCGGGCTTAGCCTGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
32288071 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
32288110 CGCACAATTGCCTTCGGGCTTAGCCCAGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCC-GGATATCATAGCT
32288149 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
32288183 CTCGAACATT
Statistics
Matches: 141, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.01
39 120 0.85
40 19 0.13
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:32302803 original size:25 final size:24
Alignment explanation
Indices: 32302775--32302832 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
32302765 GAGCGTCCTA
*
32302775 ATATAGGCTCTTCTTCAACTTCTTG
1 ATATAGGCTC-ACTTCAACTTCTTG
*
32302800 ATAT-GGCTCACTTGAACTTCTTG
1 ATATAGGCTCACTTCAACTTCTTG
*
32302823 TTATATGGCT
1 ATATA-GGCT
32302833 ATCCGGAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 15 0.54
24 5 0.18
25 8 0.29
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.43
Consensus pattern (24 bp):
ATATAGGCTCACTTCAACTTCTTG
Found at i:32308264 original size:43 final size:43
Alignment explanation
Indices: 32308120--32308275 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
32308110 GGTTATCGAG
**
32308120 ATGTGATTACATGTAAGACCATGTCTGAGACATTGGCAT-TGT
1 ATGTGATTACATGTAAGACCATGTCTGAGACATTGGCATCAAT
* * *
32308162 ATTGAGATTACATGTAAGATCATGTCTGAGACATTGGCATCATT
1 A-TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATCAAT
** * * * * *
32308206 AAT-CAATTTCGTGTAAGACCCTGTCTGGGACACTGGCATCAAT
1 -ATGTGATTACATGTAAGACCATGTCTGAGACATTGGCATCAAT
* *
32308249 ATGTGATAACATGTAAGACCATATCTG
1 ATGTGATTACATGTAAGACCATGTCTG
32308276 TGATATGGCG
Statistics
Matches: 90, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 3 0.03
43 84 0.93
44 2 0.02
45 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGAGACATTGGCATCAAT
Found at i:32308575 original size:21 final size:21
Alignment explanation
Indices: 32308549--32308590 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32308539 TGTTGATTTT
32308549 ATTTGTATATGGCTTACTAAG
1 ATTTGTATATGGCTTACTAAG
32308570 ATTTGTATATGGCTTACTAAG
1 ATTTGTATATGGCTTACTAAG
32308591 TGTTTAAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (21 bp):
ATTTGTATATGGCTTACTAAG
Found at i:32313965 original size:16 final size:16
Alignment explanation
Indices: 32313944--32313975 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32313934 TATCCAATAA
32313944 GACTTTGCCTGTAGAG
1 GACTTTGCCTGTAGAG
32313960 GACTTTGCCTGTAGAG
1 GACTTTGCCTGTAGAG
32313976 TCTACTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (16 bp):
GACTTTGCCTGTAGAG
Found at i:32320407 original size:80 final size:80
Alignment explanation
Indices: 32320268--32320474 Score: 222
Period size: 80 Copynumber: 2.6 Consensus size: 80
32320258 AATTAAATGA
* * * * * *
32320268 TATCCGGGCTAAGTCCCGAAGACATT-TATGCTAGTAGTTAAATCCGAGTTAAGAGCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCT-TGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCA
*
32320332 ATTATGCTAGT-G-AC
65 ATTATGCAAGTCGTAC
* *
32320346 TAAATCCGGGCTAAGACCCGAAGGCATTCTTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCTTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
32320411 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * * *
32320428 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCTTGCAAGTAGTTAAATCCGG
32320475 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
80 103 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCTTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:32320459 original size:40 final size:40
Alignment explanation
Indices: 32320267--32320474 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
32320257 CAATTAAATG
* * ** * *
32320267 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * * * * *
32320307 AAATCCGAGTTAAGAGCCGAAGGCAATT-ATGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* * *
32320347 AAATCCGGGCTAAGACCCGAAGGCATTCTTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
32320387 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
32320427 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
32320467 ATATCCGG
1 ATATCCGG
32320475 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 4 0.03
40 132 0.94
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:32328013 original size:40 final size:40
Alignment explanation
Indices: 32327893--32328097 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
32327883 ATTAAATGAT
* * ** * *
32327893 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * * * *
32327933 ATCC-GGTTAAGAGCCGAAGGCAATT-ATGCTAG-TGACTAA
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TTAA
32327972 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * * **
32328012 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * *
32328052 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
32328092 ATCCGG
1 ATCCGG
32328098 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 30 0.22
40 106 0.76
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
Found at i:32328062 original size:80 final size:78
Alignment explanation
Indices: 32327892--32328097 Score: 225
Period size: 80 Copynumber: 2.6 Consensus size: 78
32327882 AATTAAATGA
* * ** * * *
32327892 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCC-GGTTAAGAGCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
32327956 TTATGCTAGTGAC
66 TTATGCAAGTGAC
* *
32327969 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
32328034 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGT-G-AC
* * *
32328051 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
32328098 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
77 1 0.01
79 38 0.35
80 66 0.61
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (78 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTGAC
Found at i:32329859 original size:3 final size:3
Alignment explanation
Indices: 32329851--32329888 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
32329841 TGGACAGTTT
32329851 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32329889 TTGGTGAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32334321 original size:27 final size:27
Alignment explanation
Indices: 32334286--32334670 Score: 333
Period size: 27 Copynumber: 14.2 Consensus size: 27
32334276 TTACTGAATG
** *
32334286 CCCTTGATTTACAAAATTACAAAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
* * *
32334313 CCCTCGATTAGCAAAATTACCAAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
*
32334340 CCCCT-AGTTTGTAAAATTACCAAAATA
1 CCCTTGA-TTTGTAAAATTACCAAAATA
* * * * *
32334367 CCCCTAATTTGTGAAATTATCGAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
** ***
32334394 CCCTTGACCTGTAAAATTATTGAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
* **
32334421 CCCTTAACCTGTAAAATTACCAAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
* * *
32334448 CCCTTGACTTGTAAAATTACTAAAACA
1 CCCTTGATTTGTAAAATTACCAAAATA
**
32334475 CCCTCAATTTGTAAAATTACCAAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
* *
32334502 CCCTTGATTTGGAAAATTACTAAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
* * *
32334529 CCCTCGATTTGGAAAATTACAAAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
* * * *
32334556 CCCCTAATTTATAAAATTA-TAGAAATA
1 CCCTTGATTTGTAAAATTACCA-AAATA
** *
32334583 CCCTTGACTTTCAAAAATTACAAAAATA
1 CCCTTGA-TTTGTAAAATTACCAAAATA
* * *
32334611 CCATTGGTTTATAAAATTACCAAAATA
1 CCCTTGATTTGTAAAATTACCAAAATA
* * * *
32334638 CCCTTGGTTTGTAGATTTACCAAAACA
1 CCCTTGATTTGTAAAATTACCAAAATA
32334665 CCCTTG
1 CCCTTG
32334671 TAGGGTGAAA
Statistics
Matches: 296, Mismatches: 57, Indels: 10
0.82 0.16 0.03
Matches are distributed among these distances:
26 2 0.01
27 272 0.92
28 21 0.07
29 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
CCCTTGATTTGTAAAATTACCAAAATA
Found at i:32335130 original size:22 final size:22
Alignment explanation
Indices: 32335096--32335149 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
32335086 ATTCTGATTT
* *
32335096 TGGCTTTGCGCCAACCTACA-TA
1 TGGCTCTGTGCCAACCTA-ATTA
32335118 TGGCTCTGTGCCAACCTAATTA
1 TGGCTCTGTGCCAACCTAATTA
*
32335140 TGGCTGTGTG
1 TGGCTCTGTG
32335150 TCAAACGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (22 bp):
TGGCTCTGTGCCAACCTAATTA
Found at i:32347603 original size:217 final size:217
Alignment explanation
Indices: 32347215--32347651 Score: 775
Period size: 217 Copynumber: 2.0 Consensus size: 217
32347205 ATTCATAAGT
32347215 TGCTTATATAATATTGGATAATGAAATCAAATTCATATGAAAATGAATAATGGATGGTGACAATC
1 TGCTTATATAATATTGGATAATGAAATCAAATTCATATGAAAATGAATAATGGATGGTGACAATC
*
32347280 CTTGTGATTTCACATTTTTTACATGAGCATAATGAATTTATATTATTTGTACAGAAACGATGAAG
66 CTTGTGATTTCACATTTTTTACATGAGCATAATGAATTTATATTATGTGTACAGAAACGATGAAG
* * * * * * * *
32347345 TGCCTCTGGTTGATTCATATGTATATAGGTAACAGATTTTCATATAATGTCTGGTTGAGCGTAGT
131 TGCCTCTGGTTGATACATATGTATAAAGGTAAAAAATTTTCATATAATGCCCGGTTGAACGTAGA
32347410 AATCACCAGGATACAATTAGCA
196 AATCACCAGGATACAATTAGCA
*
32347432 TGCTTATATAATATTGGATAATGAAATCAAATTCATATGAAAATGGATAATGGATGGTGACAATC
1 TGCTTATATAATATTGGATAATGAAATCAAATTCATATGAAAATGAATAATGGATGGTGACAATC
32347497 CTTGTGATTTCACATTTTTTACATGAGCATAATGAATTTATATTATGTGTACAGAAACGATGAAG
66 CTTGTGATTTCACATTTTTTACATGAGCATAATGAATTTATATTATGTGTACAGAAACGATGAAG
32347562 TGCCTCTGGTTGATACATATGTATAAAGGTAAAAAATTTTCATATAATGCCCGGTTGAACGTAGA
131 TGCCTCTGGTTGATACATATGTATAAAGGTAAAAAATTTTCATATAATGCCCGGTTGAACGTAGA
*
32347627 AATCACTAGGATACAATTAGCA
196 AATCACCAGGATACAATTAGCA
32347649 TGC
1 TGC
32347652 CAATATGGTT
Statistics
Matches: 209, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
217 209 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (217 bp):
TGCTTATATAATATTGGATAATGAAATCAAATTCATATGAAAATGAATAATGGATGGTGACAATC
CTTGTGATTTCACATTTTTTACATGAGCATAATGAATTTATATTATGTGTACAGAAACGATGAAG
TGCCTCTGGTTGATACATATGTATAAAGGTAAAAAATTTTCATATAATGCCCGGTTGAACGTAGA
AATCACCAGGATACAATTAGCA
Found at i:32347708 original size:20 final size:20
Alignment explanation
Indices: 32347683--32347777 Score: 68
Period size: 20 Copynumber: 4.8 Consensus size: 20
32347673 TTGTACAGGA
32347683 TTGCACTTCAGTGCCTCTGT
1 TTGCACTTCAGTGCCTCTGT
** * *
32347703 TTGCACTTTGGTACCTCTGC
1 TTGCACTTCAGTGCCTCTGT
* *
32347723 TTGCA-ATCTGTTGCCTCTG-
1 TTGCACTTCAG-TGCCTCTGT
* * * *
32347742 TTACACTTCGGTGTCTTTGT
1 TTGCACTTCAGTGCCTCTGT
*
32347762 GTGCACTTCAGTGCCT
1 TTGCACTTCAGTGCCT
32347778 TTGATTAAAC
Statistics
Matches: 55, Mismatches: 17, Indels: 6
0.71 0.22 0.08
Matches are distributed among these distances:
19 12 0.22
20 43 0.78
ACGTcount: A:0.11, C:0.27, G:0.21, T:0.41
Consensus pattern (20 bp):
TTGCACTTCAGTGCCTCTGT
Found at i:32360326 original size:84 final size:84
Alignment explanation
Indices: 32360178--32360337 Score: 284
Period size: 84 Copynumber: 1.9 Consensus size: 84
32360168 ACGCGGCCAA
*
32360178 GCAGTATGGCCATGTATCCCTTGTAGCTTTAAAAGGGTTGCAAGTTAAACTATTACACGACCTAG
1 GCAGCATGGCCATGTATCCCTTGTAGCTTTAAAAGGGTTGCAAGTTAAACTATTACACGACCTAG
32360243 CACACGACCTAACACGCCT
66 CACACGACCTAACACGCCT
* *
32360262 GCAGCATGGCCATGTATCCCTTGTAGCTTTAAAAGGGTTGCAAGTTAAGCTATTACACGGCCTAG
1 GCAGCATGGCCATGTATCCCTTGTAGCTTTAAAAGGGTTGCAAGTTAAACTATTACACGACCTAG
*
32360327 CACACGGCCTA
66 CACACGACCTA
32360338 GCACACAGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 72 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (84 bp):
GCAGCATGGCCATGTATCCCTTGTAGCTTTAAAAGGGTTGCAAGTTAAACTATTACACGACCTAG
CACACGACCTAACACGCCT
Found at i:32360333 original size:12 final size:12
Alignment explanation
Indices: 32360316--32360343 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32360306 TTAAGCTATT
32360316 ACACGGCCTAGC
1 ACACGGCCTAGC
32360328 ACACGGCCTAGC
1 ACACGGCCTAGC
32360340 ACAC
1 ACAC
32360344 AGGCGTGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.43, G:0.21, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:32364520 original size:40 final size:40
Alignment explanation
Indices: 32364413--32364614 Score: 241
Period size: 40 Copynumber: 5.1 Consensus size: 40
32364403 GGATGATAAT
* * *
32364413 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-TC
* *
32364453 CGGGCTAAG-CCTGAAGGCAATT-GTGCGAGTTATTATATC
1 CGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATATC
*
32364492 CGGGCTAAGTCCCGAAGGTATTCGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
* * *
32364532 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
* * *
32364572 CGGGCTATGTCCAGAAGGCATTCGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATATC
32364612 CGG
1 CGG
32364615 TTGAATTCCG
Statistics
Matches: 140, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 34 0.24
40 106 0.76
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
Found at i:32366439 original size:40 final size:40
Alignment explanation
Indices: 32366366--32366573 Score: 177
Period size: 40 Copynumber: 5.2 Consensus size: 40
32366356 CAATTGAATG
* * * * *
32366366 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * * *
32366406 ATATTCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* ** *
32366446 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTA
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
32366486 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * **
32366526 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
32366566 ATATCCGG
1 ATATCCGG
32366574 TTGTTTTCCG
Statistics
Matches: 137, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 5 0.04
40 130 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:32366509 original size:80 final size:80
Alignment explanation
Indices: 32366411--32366558 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 80
32366401 TAATTATATT
* *
32366411 CGGGTTAAGACCCGAAGGCAATTGTGCTAGT-G-ACTACATCCGGGCTAAGACCCGAAGGCATTC
1 CGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACT--ATCCGGGCTAAGACCCGAAGGCATTC
32366474 GTGCAAGTTGTAAAATC
64 GTGCAAGTTGTAAAATC
* * *
32366491 CGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATTCGT
1 CGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATTCGT
32366556 GCA
66 GCA
32366559 TGTGGTTATA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 58 0.95
81 1 0.02
82 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (80 bp):
CGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATTCGT
GCAAGTTGTAAAATC
Found at i:32366572 original size:80 final size:78
Alignment explanation
Indices: 32366367--32366573 Score: 218
Period size: 80 Copynumber: 2.6 Consensus size: 78
32366357 AATTGAATGA
* * ** * * *
32366367 TATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATTATATTCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTAGTTATATCCGGGCTAAGACCCGAAGGCA
*
32366431 ATTGTGCTAGTGAC
65 ATTGTGCAAGTGAC
* * * * *
32366445 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTAAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
32366510 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGT-G-AC
*
32366527 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTAGTTATATCCGG
32366574 TTGTTTTCCG
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
78 1 0.01
80 101 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTGAC
Found at i:32369608 original size:28 final size:28
Alignment explanation
Indices: 32369560--32369628 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
32369550 ATTTAAACCC
*
32369560 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
32369587 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
32369615 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
32369629 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:32373862 original size:28 final size:28
Alignment explanation
Indices: 32373814--32373882 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
32373804 ATTTAAACCC
*
32373814 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
32373841 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
32373869 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
32373883 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:32378112 original size:28 final size:28
Alignment explanation
Indices: 32378070--32378138 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
32378060 TTTAAAACCC
*
32378070 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
32378097 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
32378125 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
32378139 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Done.