Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 110 of 425
Found at i:32382348 original size:28 final size:28
Alignment explanation
Indices: 32382306--32382374 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
32382296 TTTAAAACCC
*
32382306 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
32382333 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
32382361 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
32382375 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:32394341 original size:40 final size:40
Alignment explanation
Indices: 32394282--32394489 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
32394272 CAATTGAATG
* * * *
32394282 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
32394322 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
32394362 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
32394402 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
32394442 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
32394482 ATATCCGG
1 ATATCCGG
32394490 TTGTTTCCGA
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:32394420 original size:80 final size:80
Alignment explanation
Indices: 32394283--32394489 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
32394273 AATTGAATGA
* * ** * * *
32394283 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
32394348 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
32394361 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
32394426 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
32394443 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
32394490 TTGTTTCCGA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:32397898 original size:7 final size:7
Alignment explanation
Indices: 32397886--32397921 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
32397876 TTTGTGAGGC
32397886 TTTAGGG
1 TTTAGGG
32397893 TTTAGGG
1 TTTAGGG
32397900 TTTAGGG
1 TTTAGGG
32397907 TTTAGGG
1 TTTAGGG
32397914 TTTAGGG
1 TTTAGGG
32397921 T
1 T
32397922 ATCAGGTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.00, G:0.42, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:32400277 original size:39 final size:40
Alignment explanation
Indices: 32400222--32400420 Score: 271
Period size: 40 Copynumber: 5.0 Consensus size: 40
32400212 ATGATAACCA
* *
32400222 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
*
32400262 GGCTAAG-CCCGAAGGCAATTGTGCGAGTTA-TATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
32400300 GGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
32400340 GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
32400380 GGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
32400420 G
1 G
32400421 TTGAATTCCG
Statistics
Matches: 142, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
38 13 0.09
39 44 0.31
40 85 0.60
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:32404618 original size:16 final size:16
Alignment explanation
Indices: 32404597--32404628 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32404587 AAGCTATTAG
32404597 AAAACAATATCCTAAT
1 AAAACAATATCCTAAT
*
32404613 AAAACAATTTCCTAAT
1 AAAACAATATCCTAAT
32404629 CTATTTTCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAACAATATCCTAAT
Found at i:32416413 original size:46 final size:47
Alignment explanation
Indices: 32416261--32416469 Score: 166
Period size: 46 Copynumber: 4.5 Consensus size: 47
32416251 TGTGTGAGCT
* * * *
32416261 AGTGTAAG-ACATGTCTGGGACATGCATCAGC--CATATTATGAAAGCC
1 AGTGTAAGAACATGTCTGGGACATGCATCAGCTTC-GA-GACGTAAGCC
* * * * *
32416307 AATGTAAGACCATGTCTGGGACATGGCATCGGCATT-GAGACG-AGTGCT
1 AGTGTAAGAACATGTCTGGGACAT-GCATCAGC-TTCGAGACGTA-AGCC
*
32416355 AGTGTAAG-ACATGTCTGGGACATGCTTCAGCTTCGAGACGTAAGCC
1 AGTGTAAGAACATGTCTGGGACATGCATCAGCTTCGAGACGTAAGCC
* * * * *
32416401 AGTGTAA-AACATGTCTGGGGCATGCATCAGCTACAAGATGT-A-TC
1 AGTGTAAGAACATGTCTGGGACATGCATCAGCTTCGAGACGTAAGCC
*
32416445 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGAACATGTCTGGGACATG
32416470 GCATTGGTAC
Statistics
Matches: 131, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
44 8 0.06
45 18 0.14
46 56 0.43
47 30 0.23
48 18 0.14
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGAACATGTCTGGGACATGCATCAGCTTCGAGACGTAAGCC
Found at i:32417717 original size:21 final size:22
Alignment explanation
Indices: 32417678--32417718 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32417668 TCGAGTTAGT
*
32417678 CACATGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
32417700 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
32417719 GTACCTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:32424017 original size:40 final size:40
Alignment explanation
Indices: 32423934--32424131 Score: 240
Period size: 40 Copynumber: 5.0 Consensus size: 40
32423924 TCGAATGATG
* * * * * *
32423934 TCCGGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGATCCAAAGGCATTTGTGC-GAGTTACTAAA
* * *
32423974 TCCGAACTAAGATCCAAAGGCATTTGGGTGAGTTACTAAA
1 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAA
32424014 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAA
*
32424054 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAA
* *
32424094 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTA
32424132 TAACCGGGCT
Statistics
Matches: 141, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 132 0.94
41 8 0.06
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAA
Found at i:32424139 original size:40 final size:40
Alignment explanation
Indices: 32423934--32424159 Score: 198
Period size: 40 Copynumber: 5.7 Consensus size: 40
32423924 TCGAATGATG
* * * * *
32423934 TCCGGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
32423974 TCC-GAACTAAGAT-CCAAAGGCATTTGGGTGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32424014 TCC-GGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
32424054 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32424094 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
32424135 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGATAAGTCCCGAAGGCATTTG
32424160 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
39 2 0.01
40 151 0.92
41 11 0.07
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32424173 original size:40 final size:40
Alignment explanation
Indices: 32424067--32424178 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
32424057 GGACTAAGAT
** *
32424067 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
32424107 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
32424147 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
32424179 TTAAACTCCG
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 2 0.03
40 59 0.94
41 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:32424178 original size:80 final size:80
Alignment explanation
Indices: 32423934--32424166 Score: 226
Period size: 80 Copynumber: 2.9 Consensus size: 80
32423924 TCGAATGATG
* * * * * *
32423934 TCCGGGCTAAGTTCCGAAGGC-TTTGTGCTAAG-TGACTATATCCGAACTAAGATCCAAAGGCAT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGACTAAGATCCGAAGGCAT
***
32423997 TTGGGTGAGTTACTAAA
64 TTGAACGAGTTACTAAA
* *
32424014 TCC-GGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCAT
**
32424077 TTGTGCGAGTTACTAAA
64 TTGAACGAGTTACTAAA
* * *
32424094 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTAT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCAT
32424157 TTGAACGAGT
64 TTGAACGAGT
32424167 AGCTATATCC
Statistics
Matches: 130, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
79 4 0.03
80 112 0.86
81 14 0.11
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAA
Found at i:32431724 original size:40 final size:39
Alignment explanation
Indices: 32431660--32431858 Score: 209
Period size: 39 Copynumber: 5.1 Consensus size: 39
32431650 GCTACTCGTT
* * * ** *
32431660 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* * *
32431700 CAAATGCCTTCGGGACTTAACCCGGGTATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
32431740 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTGGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * *
32431779 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCACA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
** * *
32431818 CATTTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
32431857 CA
1 CA
32431859 TTCATACACA
Statistics
Matches: 140, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 95 0.68
40 45 0.32
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:32431831 original size:78 final size:79
Alignment explanation
Indices: 32431665--32431847 Score: 242
Period size: 78 Copynumber: 2.3 Consensus size: 79
32431655 TCGTTCAAAC
* * ** *
32431665 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGGTATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
*
32431730 ACAACTCGCACAATT
65 ACAACTCACACAATT
** * *
32431745 GCCTTCGGGCTTAGCCCGGATATCATAACTGGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
32431809 CAATTCACACATTT
66 CAACTCACACAATT
32431823 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
32431848 CAATTCGCAC
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
78 50 0.55
79 32 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCACACAATT
Found at i:32431860 original size:39 final size:39
Alignment explanation
Indices: 32431696--32431858 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
32431686 TATGGTAACC
* * *
32431696 CGCACAAATGCCTTCGGGACTTAACCCGGGTATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
32431736 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
32431775 GGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
32431814 CACACATTTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
32431853 CGCACA
1 CGCACA
32431859 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:32438139 original size:38 final size:38
Alignment explanation
Indices: 32438088--32438163 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
32438078 AAAATATAAG
32438088 AAGTGGTGCAACTTCAACAAGCAAAAGTATCGTCTCTC
1 AAGTGGTGCAACTTCAACAAGCAAAAGTATCGTCTCTC
*
32438126 AAGTGGTGCAACTTCAACAAGCAAAAGTATGGTCTCTC
1 AAGTGGTGCAACTTCAACAAGCAAAAGTATCGTCTCTC
32438164 TTGTAAATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (38 bp):
AAGTGGTGCAACTTCAACAAGCAAAAGTATCGTCTCTC
Found at i:32444394 original size:29 final size:29
Alignment explanation
Indices: 32444359--32444462 Score: 138
Period size: 29 Copynumber: 3.6 Consensus size: 29
32444349 ATAATCGATT
*
32444359 TCGCACACTTAGTGCCATGTGATTTAAGC
1 TCGCACACTTAGTGCCATATGATTTAAGC
* ** *
32444388 TCGCACACATAGTGCCATACAATTTAAGT
1 TCGCACACTTAGTGCCATATGATTTAAGC
32444417 TCGCACACTTAGTGCCATATG-TTTCAAGC
1 TCGCACACTTAGTGCCATATGATTT-AAGC
*
32444446 TTGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
32444463 ATCTTGTCAC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 3 0.05
29 61 0.95
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATGATTTAAGC
Found at i:32447266 original size:49 final size:49
Alignment explanation
Indices: 32447139--32447361 Score: 131
Period size: 49 Copynumber: 4.7 Consensus size: 49
32447129 TAGGGTAAAA
* * ** *
32447139 TGCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAA
1 TGCCGACGCCATGTCCCAAACA-GGTCTTACACTGACTCTCATCTATCAG
* * * * * * * *
32447187 AGTCGATGCCATGTCCCAGATA-GACTTTACACTGACTTTCATGTATCGAG
1 TGCCGACGCCATGTCCCAAACAGGTC-TTACACTGACTCTCATCTATC-AG
* * * *
32447237 -GCCGATGCCGTGTCTCAAACAGGTCTTACACTGGCTCTCATCTATCAG
1 TGCCGACGCCATGTCCCAAACAGGTCTTACACTGACTCTCATCTATCAG
* * * *
32447285 TGCCGACGCCATGTCCCAGACATGTCTTACATTGA--CACA-C-ATCA-
1 TGCCGACGCCATGTCCCAAACAGGTCTTACACTGACTCTCATCTATCAG
* * * *
32447329 AGCTGACGCCATGTCCTAGACAGGTCTTACACT
1 TGCCGACGCCATGTCCCAAACAGGTCTTACACT
32447362 AGCTTCTATA
Statistics
Matches: 137, Mismatches: 32, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
44 28 0.20
45 4 0.03
46 3 0.02
47 15 0.11
48 20 0.15
49 64 0.47
50 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (49 bp):
TGCCGACGCCATGTCCCAAACAGGTCTTACACTGACTCTCATCTATCAG
Found at i:32458074 original size:12 final size:13
Alignment explanation
Indices: 32458058--32458095 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
32458048 AAGTAATGCA
32458058 AGGTATAATATAT
1 AGGTATAATATAT
*
32458071 -GGTAAAATATAT
1 AGGTATAATATAT
32458083 AGCGTATAATATA
1 AG-GTATAATATA
32458096 ATTTGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 9 0.43
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.34
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:32458250 original size:27 final size:26
Alignment explanation
Indices: 32458194--32458246 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
32458184 TATAAGGAAT
*
32458194 AATATAATAAAATATGATATGGAATA
1 AATATAATAAAATATGATATGAAATA
32458220 AATATAAATAAAATAT-A-ATGAAATA
1 AATAT-AATAAAATATGATATGAAATA
32458245 AA
1 AA
32458247 AATACTATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 9 0.36
26 6 0.24
27 10 0.40
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (26 bp):
AATATAATAAAATATGATATGAAATA
Found at i:32458353 original size:12 final size:12
Alignment explanation
Indices: 32458338--32458363 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32458328 AAAAATATAT
32458338 ATATATAATAAA
1 ATATATAATAAA
32458350 ATATATAATAAA
1 ATATATAATAAA
32458362 AT
1 AT
32458364 TTAATTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:32458358 original size:47 final size:45
Alignment explanation
Indices: 32458307--32458397 Score: 110
Period size: 47 Copynumber: 2.0 Consensus size: 45
32458297 CAATTAATGA
* *
32458307 ATAATAATACATAATTTATAAAAAAATATATATATATAATAAAATAT
1 ATAATAAAACATAATTTATAAAAAAA-ATATAGA-ATAATAAAATAT
** **
32458354 ATAATAAAATTTAATTTATAAGTAAAATATAGAATAATAAAATA
1 ATAATAAAACATAATTTATAAAAAAAATATAGAATAATAAAATA
32458398 ACATGATGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 11 0.29
46 6 0.16
47 21 0.55
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (45 bp):
ATAATAAAACATAATTTATAAAAAAAATATAGAATAATAAAATAT
Found at i:32458363 original size:30 final size:30
Alignment explanation
Indices: 32458323--32458390 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
32458313 ATACATAATT
*
32458323 TATAAAAAAATATATATATATAA-TAAAATA
1 TATAATAAAATATA-ATATATAAGTAAAATA
* *
32458353 TATAATAAAATTTAATTTATAAGTAAAATA
1 TATAATAAAATATAATATATAAGTAAAATA
*
32458383 TAGAATAA
1 TATAATAA
32458391 TAAAATAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (30 bp):
TATAATAAAATATAATATATAAGTAAAATA
Found at i:32461552 original size:88 final size:88
Alignment explanation
Indices: 32461337--32461553 Score: 276
Period size: 88 Copynumber: 2.5 Consensus size: 88
32461327 ATAATGCTGA
* * * *
32461337 TATTTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATTTGCTATATTCGATCTGCTCCCTG
1 TATTTTCGATCTGCTCTCTGAC-CATACAGAGACGCCAAATTTGCTATATTCGATCTGCTCCCTG
32461402 ACAATACTGAGACGCCAAATTTGC
65 ACAATACTGAGACGCCAAATTTGC
* * * * * *
32461426 TATCTTCGATCTGCTCTTTGACCATACAGAAATGCCAAATTTGCTATCTTCGATCTGCTCTCTGA
1 TATTTTCGATCTGCTCTCTGACCATACAGAGACGCCAAATTTGCTATATTCGATCTGCTCCCTGA
* *
32461491 CCATACAT-AGACGTCAAATCTT-C
66 CAATAC-TGAGACGCCAAAT-TTGC
*
32461514 TATTTTCGATCTGCTCTCTGACCATACAGAGACACCAAAT
1 TATTTTCGATCTGCTCTCTGACCATACAGAGACGCCAAAT
32461554 CTTGGATCTG
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
88 88 0.81
89 21 0.19
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (88 bp):
TATTTTCGATCTGCTCTCTGACCATACAGAGACGCCAAATTTGCTATATTCGATCTGCTCCCTGA
CAATACTGAGACGCCAAATTTGC
Found at i:32461556 original size:44 final size:44
Alignment explanation
Indices: 32461363--32461553 Score: 267
Period size: 44 Copynumber: 4.3 Consensus size: 44
32461353 TCCGTCGAAC
* * *
32461363 ACAGAGACGCCAAATTTGCTATATTCGATCTGCTCCCTGACAAT
1 ACAGAGACGCCAAATTTGCTATCTTCGATCTGCTCTCTGACCAT
* *
32461407 ACTGAGACGCCAAATTTGCTATCTTCGATCTGCTCTTTGACCAT
1 ACAGAGACGCCAAATTTGCTATCTTCGATCTGCTCTCTGACCAT
* *
32461451 ACAGAAATGCCAAATTTGCTATCTTCGATCTGCTCTCTGACCAT
1 ACAGAGACGCCAAATTTGCTATCTTCGATCTGCTCTCTGACCAT
* * *
32461495 ACATAGACGTCAAATCTT-CTATTTTCGATCTGCTCTCTGACCAT
1 ACAGAGACGCCAAAT-TTGCTATCTTCGATCTGCTCTCTGACCAT
*
32461539 ACAGAGACACCAAAT
1 ACAGAGACGCCAAAT
32461554 CTTGGATCTG
Statistics
Matches: 129, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
44 127 0.98
45 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (44 bp):
ACAGAGACGCCAAATTTGCTATCTTCGATCTGCTCTCTGACCAT
Found at i:32461701 original size:89 final size:89
Alignment explanation
Indices: 32461594--32462145 Score: 466
Period size: 89 Copynumber: 6.2 Consensus size: 89
32461584 AGCCAAATCA
* * *
32461594 GCTATGT-TTTCGATCTGCTCCTTGTGAACGTAAGGATGCCAAATCATATTGGATCTACTTTGAT
1 GCTATGTCTTT-GATCTGCTCCTTGTGAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGAT
*
32461658 GTGAAAACATCTGAAGGTTAGATCT
65 GTGAAAACATCCGAAGGTTAGATCT
* *
32461683 GCTATGTCTTTGATCTGCTCCTTGTAAACGCAAGGATGCCAAACCATCTTGGATCTACTTCGATG
1 GCTATGTCTTTGATCTGCTCCTTGTGAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATG
32461748 TGAAAACATCCGAAGGTTAGATCT
66 TGAAAACATCCGAAGGTTAGATCT
* * * ** * * * *
32461772 GCTATGTCTTTGATCTACT-CTCCGTCAA-ATATGGAGATGTCAAATCTGTTATCTTCGATCTGC
1 GCTATGTCTTTGATCTGCTCCT-TGTGAACGCA-AG-GATGCCAAATC----ATCTTGGATCTAC
* * * * * ** *
32461835 -TC--TCTGACAATA-CAGAGATGCCAAATCT
59 TTCGATGTGAAAACATCCGA-AGGTTAGATCT
* * ** **
32461863 ACCA--TCTTTGATCTGCT-CTCTGACAATAC-AGAGATGCCAAATCATCTTGGATCTACTTC-A
1 GCTATGTCTTTGATCTGCTCCT-TGTGAACGCAAG-GATGCCAAATCATCTTGGATCTACTTCGA
* * * * ** * *
32461923 GCGTGAACACGT--GAAAGCCAAATCA
64 -TGTGAAAACATCCGAAGGTTAGATCT
* * * * *
32461948 GCTATGTCTTCGAACTGCTCATTATGAACGCAAGGATGCCAAATCATCTTAGATCTACTTCGATG
1 GCTATGTCTTTGATCTGCTCCTTGTGAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATG
32462013 TGAAAACATCCGAAGGTTAGATCT
66 TGAAAACATCCGAAGGTTAGATCT
* * * *
32462037 GCTATGTCTTCGATCTGCTCCTTGTAAATGCAAGGATGCCAAACCATCTTGGATCTACTTCGATG
1 GCTATGTCTTTGATCTGCTCCTTGTGAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATG
*
32462102 TGAAAACATCCGAAGGTTAGATTT
66 TGAAAACATCCGAAGGTTAGATCT
*
32462126 GCTATGTCTTCGATCTGCTC
1 GCTATGTCTTTGATCTGCTC
32462146 TCCGTCAAAT
Statistics
Matches: 373, Mismatches: 69, Indels: 42
0.77 0.14 0.09
Matches are distributed among these distances:
84 11 0.03
85 13 0.03
86 2 0.01
87 53 0.14
88 19 0.05
89 230 0.62
90 16 0.04
91 16 0.04
93 2 0.01
94 11 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (89 bp):
GCTATGTCTTTGATCTGCTCCTTGTGAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATG
TGAAAACATCCGAAGGTTAGATCT
Found at i:32461860 original size:44 final size:44
Alignment explanation
Indices: 32461822--32461905 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
32461812 CAAATCTGTT
32461822 ATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACC
1 ATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACC
*
32461866 ATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATC
1 ATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATC
32461906 ATCTTGGATC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (44 bp):
ATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACC
Found at i:32461911 original size:178 final size:177
Alignment explanation
Indices: 32461717--32462275 Score: 541
Period size: 178 Copynumber: 3.2 Consensus size: 177
32461707 TAAACGCAAG
32461717 GATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTT
1 GATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTT
* * * * * *
32461782 TGATCTACTCTCCGTCAAATATGGAGATGTCAAATCTGTTATCTTCGATCTGCTCTCTGACAATA
66 CGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCT-TTATCTTAGATCTACTCTCTGACAATA
* *
32461847 CAGAGATGCCAAATCTACCATCTTTGATCTGCTCTCTGACAATACAGA
130 CAGAGACGCCAAATCTGCCATCTTTGATCTGCTCTCTGACAATACAGA
* * * * * ** * *
32461895 GATGCCAAATCATCTTGGATCTACTTC-AGCGTGAACACGT--GAAAGCCAAATCAGCTATGTCT
1 GATGCCAAACCATCTTGGATCTACTTCGA-TGTGAAAACATCCGAAGGTTAGATCTGCTATGTCT
* ** * ** *
32461957 TCGAACTGCTCAT-TATGAACGCA-AG-GATGCCAAATC---ATCTTAGATCTACTTCGATGTGA
65 TCGATCTGCTC-TCCGTCAA-ATATAGAGATGCCAAATCTTTATCTTAGATCTAC-TC--TCTGA
* * * * ** * * * *
32462016 AAACATCCGA-AGGTTAGATCTGCTATGTCTTCGATCTGCTC-CTTGTA-AATGCA-A
125 CAATA-CAGAGACGCCAAATCTGCCA--TCTTTGATCTGCTCTC-TG-ACAATACAGA
*
32462070 GGATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATTTGCTATGTCT
1 -GATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCT
* *
32462135 TCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTATTATCTTTGATATACTCTCTGACAAT
65 TCGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCT-TTATCTTAGATCTACTCTCTGACAAT
*
32462200 ACAGAGACGCCTAATCTGCCATCTTTGATCTGCTCTCTGACAATACAGA
129 ACAGAGACGCCAAATCTGCCATCTTTGATCTGCTCTCTGACAATACAGA
* *
32462249 GATGTCAAATCATCTTGGATCTACTTC
1 GATGCCAAACCATCTTGGATCTACTTC
32462276 AGCATAAACA
Statistics
Matches: 290, Mismatches: 65, Indels: 52
0.71 0.16 0.13
Matches are distributed among these distances:
171 11 0.04
172 2 0.01
174 16 0.06
175 15 0.05
176 83 0.29
177 8 0.03
178 110 0.38
179 16 0.06
180 16 0.06
182 2 0.01
183 11 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (177 bp):
GATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTT
CGATCTGCTCTCCGTCAAATATAGAGATGCCAAATCTTTATCTTAGATCTACTCTCTGACAATAC
AGAGACGCCAAATCTGCCATCTTTGATCTGCTCTCTGACAATACAGA
Found at i:32462116 original size:354 final size:354
Alignment explanation
Indices: 32461457--32462278 Score: 1274
Period size: 354 Copynumber: 2.3 Consensus size: 354
32461447 CCATACAGAA
* * * * * * *
32461457 ATGCCAAATTTGCTATCTTCGATCTGCTCTCTGACCATACATAGACGTCAAATCTTCTAT-TTTC
1 ATGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACCATCTTT-
* ** * **
32461521 GATCTGCTCTCTGACCATACAGAGACACC-AA--ATCTTGGATCTGCTTCAATGTGAACACGTGA
65 GATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCGTGAACACGTGA
* * * * * *
32461583 AAGCCAAATCAGCTATGTTTTCGATCTGCTCCTTGTGAACGTAAGGATGCCAAATCATATTGGAT
130 AAGCCAAATCAGCTATGTCTTCGAACTGCTCATTATGAACGCAAGGATGCCAAATCATATTAGAT
* * *
32461648 CTACTTTGATGTGAAAACATCTGAAGGTTAGATCTGCTATGTCTTTGATCTGCTCCTTGTAAACG
195 CTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCTTGTAAACG
32461713 CAAGGATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATG
260 CAAGGATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATG
* *
32461778 TCTTTGATCTACTCTCCGTCAAATATGGAG
325 TCTTCGATCTACTCTCCGTCAAATATAGAG
* *
32461808 ATGTCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACCATCTTTG
1 ATGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACCATCTTTG
32461873 ATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCGTGAACACGTGAA
66 ATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCGTGAACACGTGAA
*
32461938 AGCCAAATCAGCTATGTCTTCGAACTGCTCATTATGAACGCAAGGATGCCAAATCATCTTAGATC
131 AGCCAAATCAGCTATGTCTTCGAACTGCTCATTATGAACGCAAGGATGCCAAATCATATTAGATC
*
32462003 TACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCTTGTAAATGC
196 TACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGC
*
32462068 AAGGATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATTTGCTATGT
261 AAGGATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT
*
32462133 CTTCGATCTGCTCTCCGTCAAATATAGAG
326 CTTCGATCTACTCTCCGTCAAATATAGAG
* * * * * *
32462162 ATGCCAAATCTATTATCTTTGATATACTCTCTGACAATACAGAGACGCCTAATCTGCCATCTTTG
1 ATGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACCATCTTTG
*
32462227 ATCTGCTCTCTGACAATACAGAGATGTCAAATCATCTTGGATCTACTTCAGC
66 ATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGC
32462279 ATAAACACCT
Statistics
Matches: 428, Mismatches: 39, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
351 77 0.18
352 5 0.01
354 346 0.81
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (354 bp):
ATGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACCATCTTTG
ATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCGTGAACACGTGAA
AGCCAAATCAGCTATGTCTTCGAACTGCTCATTATGAACGCAAGGATGCCAAATCATATTAGATC
TACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCCTTGTAAACGC
AAGGATGCCAAACCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTTAGATCTGCTATGT
CTTCGATCTACTCTCCGTCAAATATAGAG
Found at i:32462216 original size:44 final size:44
Alignment explanation
Indices: 32462153--32462259 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 44
32462143 CTCTCCGTCA
* * **
32462153 AATATAGAGATGCCAAATCTATTATCTTTGATATACTCTCTGAC
1 AATACAGAGACGCCAAATCTACCATCTTTGATATACTCTCTGAC
* * * *
32462197 AATACAGAGACGCCTAATCTGCCATCTTTGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACCATCTTTGATATACTCTCTGAC
* *
32462241 AATACAGAGATGTCAAATC
1 AATACAGAGACGCCAAATC
32462260 ATCTTGGATC
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (44 bp):
AATACAGAGACGCCAAATCTACCATCTTTGATATACTCTCTGAC
Found at i:32465012 original size:2 final size:2
Alignment explanation
Indices: 32465005--32465045 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
32464995 TCGATCGGAG
32465005 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32465046 GAGTACGCAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32465113 original size:29 final size:29
Alignment explanation
Indices: 32465079--32465210 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
32465069 TACTCGATTT
* * *
32465079 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
32465108 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
32465137 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
32465166 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
32465195 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32465211 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:32465171 original size:58 final size:59
Alignment explanation
Indices: 32465078--32465210 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
32465068 ATACTCGATT
* * * *
32465078 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
32465136 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
32465195 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
32465211 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:32472780 original size:2 final size:2
Alignment explanation
Indices: 32472773--32472797 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32472763 TCGATCGGAG
32472773 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
32472798 GAGTACGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32472865 original size:29 final size:29
Alignment explanation
Indices: 32472831--32472962 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
32472821 TACTCGATTT
* * *
32472831 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
32472860 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
32472889 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
32472918 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
32472947 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32472963 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:32472923 original size:58 final size:59
Alignment explanation
Indices: 32472830--32472962 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
32472820 ATACTCGATT
* * * *
32472830 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
32472888 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
32472947 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
32472963 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:32485551 original size:12 final size:13
Alignment explanation
Indices: 32485535--32485572 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
32485525 AAGTAATGCA
32485535 AGGTATAATATAT
1 AGGTATAATATAT
*
32485548 -GGTAAAATATAT
1 AGGTATAATATAT
32485560 AGTGTATAATATA
1 AG-GTATAATATA
32485573 ATTTGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:32485862 original size:41 final size:42
Alignment explanation
Indices: 32485785--32485871 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 42
32485775 CAATTAATGA
*
32485785 ATAATAATACATAATTTATAAAAAAATAAAAAAATAATATAT
1 ATAATAATACATAATTTATAAAAAAATAAAAAAATAATAAAT
* * * *
32485827 ATAATAA-ATATAATTTATAAGTAAAAT-ATATAATAATAAAT
1 ATAATAATACATAATTTATAA-AAAAATAAAAAAATAATAAAT
32485868 ATAA
1 ATAA
32485872 CATGATGGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 27 0.69
42 12 0.31
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (42 bp):
ATAATAATACATAATTTATAAAAAAATAAAAAAATAATAAAT
Found at i:32488832 original size:41 final size:40
Alignment explanation
Indices: 32488691--32488835 Score: 177
Period size: 40 Copynumber: 3.6 Consensus size: 40
32488681 CTCGCACAAG
* * * *
32488691 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
32488731 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
32488771 GCCTTC-GGATTTTAGTCCGGA-AGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATA-TAGTCGC-TAGCACAAAT
*
32488812 GCCTTCGGGACGTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
32488836 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 4 0.04
40 58 0.64
41 24 0.27
42 4 0.04
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:32490925 original size:93 final size:93
Alignment explanation
Indices: 32490813--32490984 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32490803 GCCCATAAGT
* *
32490813 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32490878 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32490906 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32490971 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32490985 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32490980 original size:46 final size:46
Alignment explanation
Indices: 32490805--32490980 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
32490795 TGTAACCCGC
* * *
32490805 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
32490851 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
32490901 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
32490944 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32490981 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:32501180 original size:21 final size:21
Alignment explanation
Indices: 32501141--32501180 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32501131 TTTTGCCTAA
*
32501141 AATGTGAATTGAATGAAATTG
1 AATGTGAATTGAATCAAATTG
**
32501162 AATGTGAATTTTATCAAAT
1 AATGTGAATTGAATCAAAT
32501181 CAATGTTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (21 bp):
AATGTGAATTGAATCAAATTG
Found at i:32506866 original size:81 final size:81
Alignment explanation
Indices: 32506710--32506922 Score: 252
Period size: 81 Copynumber: 2.6 Consensus size: 81
32506700 GGCATAATCG
* * * *
32506710 TCATTTTACCATAC-AGAGGTATTACGATCATTTTACCCTA-CAGGGATATTACGGTAATCCTAT
1 TCATTTTACCCTACAAG-GGTATTACGATCATTTTACCCTATAAGGG-TATTACGATAATCCTAC
*
32506773 CCTATAGGGGTATTACGA
64 CCTACAGGGGTATTACGA
* **
32506791 TCATTTTACCCTACAAGGGTATTACGATCATTTTACCCTATAAGGGTATTACGATCATTTTACCC
1 TCATTTTACCCTACAAGGGTATTACGATCATTTTACCCTATAAGGGTATTACGATAATCCTACCC
* *
32506856 TACAGTGGTATTACGG
66 TACAGGGGTATTACGA
* * * *
32506872 TCAGTTTACACTACAGGGGTATTAC-AGTAATTTTACCCTATAAGGGTATTA
1 TCATTTTACCCTACAAGGGTATTACGA-TCATTTTACCCTATAAGGGTATTA
32506923 TGGTTATTTT
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
80 1 0.01
81 108 0.94
82 6 0.05
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (81 bp):
TCATTTTACCCTACAAGGGTATTACGATCATTTTACCCTATAAGGGTATTACGATAATCCTACCC
TACAGGGGTATTACGA
Found at i:32506934 original size:27 final size:27
Alignment explanation
Indices: 32506710--32506922 Score: 211
Period size: 27 Copynumber: 7.9 Consensus size: 27
32506700 GGCATAATCG
32506710 TCATTTTA-CC-ATACAGAGGTATTACGA
1 TCATTTTACCCTATA-AG-GGTATTACGA
* *
32506737 TCATTTTACCCTA-CAGGGATATTACGG
1 TCATTTTACCCTATAAGGG-TATTACGA
* ** * *
32506764 TAATCCTATCCTATAGGGGTATTACGA
1 TCATTTTACCCTATAAGGGTATTACGA
*
32506791 TCATTTTACCCTACAAGGGTATTACGA
1 TCATTTTACCCTATAAGGGTATTACGA
32506818 TCATTTTACCCTATAAGGGTATTACGA
1 TCATTTTACCCTATAAGGGTATTACGA
* *
32506845 TCATTTTACCCTA-CAGTGGTATTACGG
1 TCATTTTACCCTATAAG-GGTATTACGA
* * * *
32506872 TCAGTTTACACTACAGGGGTATTAC-A
1 TCATTTTACCCTATAAGGGTATTACGA
*
32506898 GTAATTTTACCCTATAAGGGTATTA
1 -TCATTTTACCCTATAAGGGTATTA
32506923 TGGTTATTTT
Statistics
Matches: 151, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.03
27 140 0.93
28 6 0.04
29 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTATAAGGGTATTACGA
Found at i:32506934 original size:54 final size:53
Alignment explanation
Indices: 32506709--32506935 Score: 235
Period size: 54 Copynumber: 4.2 Consensus size: 53
32506699 AGGCATAATC
* *
32506709 GTCATTTTAC-CATACAGAGGTATTACGATCATTTTACCCTACAGGGATATTACG
1 GTCATTTTACAC-TACAGGGGTATTACGATCATTTTACCCTAAAGGG-TATTACG
* ** *
32506763 GTAATCCTATC-CTATAGGGGTATTACGATCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTA-CACTACAGGGGTATTACGATCATTTTACCCTA-AAGGGTATTACG
* * * * *
32506817 ATCATTTTACCCTATAAGGGTATTACGATCATTTTACCCTACAGTGGTATTACG
1 GTCATTTTACACTACAGGGGTATTACGATCATTTTACCCTAAAG-GGTATTACG
* * *
32506871 GTCAGTTTACACTACAGGGGTATTAC-AGTAATTTTACCCTATAAGGGTATTATG
1 GTCATTTTACACTACAGGGGTATTACGA-TCATTTTACCCTA-AAGGGTATTACG
*
32506925 GTTATTTTACA
1 GTCATTTTACA
32506936 AATCGGGGGT
Statistics
Matches: 145, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
53 4 0.03
54 133 0.92
55 8 0.06
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (53 bp):
GTCATTTTACACTACAGGGGTATTACGATCATTTTACCCTAAAGGGTATTACG
Found at i:32506945 original size:27 final size:27
Alignment explanation
Indices: 32506915--32507024 Score: 82
Period size: 27 Copynumber: 4.1 Consensus size: 27
32506905 TACCCTATAA
32506915 GGGTATTATGGTT-ATTTTACAAATCGG
1 GGGTATT-TGGTTAATTTTACAAATCGG
** *
32506942 GGGTATTTTTTTAATTTTACAAATCAG
1 GGGTATTTGGTTAATTTTACAAATCGG
* * * * *
32506969 AGGCATTTAAG-TAATTTCACAAATCAG
1 GGGTATTT-GGTTAATTTTACAAATCGG
* *
32506996 GGGTATTTCGG-TAATTTTAAAAATTGG
1 GGGTATTT-GGTTAATTTTACAAATCGG
32507023 GG
1 GG
32507025 TCTTAACGAC
Statistics
Matches: 65, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
26 3 0.05
27 62 0.95
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTGGTTAATTTTACAAATCGG
Found at i:32510451 original size:26 final size:26
Alignment explanation
Indices: 32510422--32510490 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
32510412 CACTAATATC
* * *
32510422 GCAGTAAAGCTACCAGTAATAATAAT
1 GCAGCAAAGCTACCAGAAACAATAAT
*
32510448 GCAGCATAGCTACCAGAAACAATAAAT
1 GCAGCAAAGCTACCAGAAACAAT-AAT
** *
32510475 GTGGCAAAGCCACCAG
1 GCAGCAAAGCTACCAG
32510491 TATCAGTAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
26 19 0.56
27 15 0.44
ACGTcount: A:0.43, C:0.22, G:0.19, T:0.16
Consensus pattern (26 bp):
GCAGCAAAGCTACCAGAAACAATAAT
Found at i:32510489 original size:27 final size:27
Alignment explanation
Indices: 32510459--32510546 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 27
32510449 CAGCATAGCT
* * *
32510459 ACCAGAAACAATAAATGTGGCAAAGCC
1 ACCAGTAACAGTAAATGTGCCAAAGCC
* * *
32510486 ACCAGTATCAGTAATTGTGCCATAGCC
1 ACCAGTAACAGTAAATGTGCCAAAGCC
* * * *
32510513 ACCAGTAACAGTGAATGTGACATAGTC
1 ACCAGTAACAGTAAATGTGCCAAAGCC
32510540 ACCAGTA
1 ACCAGTA
32510547 CAATACTTCC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (27 bp):
ACCAGTAACAGTAAATGTGCCAAAGCC
Found at i:32510735 original size:27 final size:26
Alignment explanation
Indices: 32510687--32510857 Score: 128
Period size: 27 Copynumber: 6.3 Consensus size: 26
32510677 GGGCATAATC
** *
32510687 GTCATTTTACCAAACAATGGTATTACG
1 GTCATTTTACCCTA-AAGGGTATTACG
* *
32510714 ATTATTTTACCCTATAAGGGTATTACG
1 GTCATTTTACCCTA-AAGGGTATTACG
* ** *
32510741 GTAATCCTACCCTATAGGGGTATT-CTG
1 GTCATTTTACCCTA-AAGGGTATTAC-G
*
32510768 GTCATTTTACCCTACAGGGCTATTACG
1 GTCATTTTACCCTAAAGGG-TATTACG
*
32510795 GTCATTTTACCCTAAAGGGGTATTACA
1 GTCATTTTACCCTAAA-GGGTATTACG
* * * **
32510822 GCCATTTTACGCTACAGGGTAATTATA
1 GTCATTTTACCCTAAAGGGT-ATTACG
32510849 GTCATTTTA
1 GTCATTTTA
32510858 TAAATCGGGG
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 8 0.07
27 104 0.90
28 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCCTAAAGGGTATTACG
Found at i:32510828 original size:54 final size:53
Alignment explanation
Indices: 32510717--32510857 Score: 149
Period size: 54 Copynumber: 2.6 Consensus size: 53
32510707 TATTACGATT
* * ** * * *
32510717 ATTTTACCCTATAAGGGTATTACGGTAATCCTACCCTATAGGGGTATTCTGGTC
1 ATTTTACCCTA-CAGGGTATTACGGTCATTTTACCCTAAAGGGGTATTCTAGCC
32510771 ATTTTACCCTACAGGGCTATTACGGTCATTTTACCCTAAAGGGGTATTAC-AGCC
1 ATTTTACCCTACAGGG-TATTACGGTCATTTTACCCTAAAGGGGTATT-CTAGCC
* **
32510825 ATTTTACGCTACAGGGTAATTATAGTCATTTTA
1 ATTTTACCCTACAGGGT-ATTACGGTCATTTTA
32510858 TAAATCGGGG
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
53 5 0.07
54 68 0.92
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (53 bp):
ATTTTACCCTACAGGGTATTACGGTCATTTTACCCTAAAGGGGTATTCTAGCC
Found at i:32510915 original size:27 final size:26
Alignment explanation
Indices: 32510852--32510919 Score: 100
Period size: 27 Copynumber: 2.6 Consensus size: 26
32510842 AATTATAGTC
*
32510852 ATTTTATAAATCGGGGTATTTCGATA
1 ATTTTAAAAATCGGGGTATTTCGATA
*
32510878 ATTTCAAAAATCAGGGGTATTTCGATA
1 ATTTTAAAAATC-GGGGTATTTCGATA
*
32510905 ATTTTACAAATCGGG
1 ATTTTAAAAATCGGG
32510920 ATCTTAACGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 13 0.35
27 24 0.65
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (26 bp):
ATTTTAAAAATCGGGGTATTTCGATA
Found at i:32517986 original size:14 final size:14
Alignment explanation
Indices: 32517963--32517997 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
32517953 CACTATCGCA
*
32517963 ATATAAAATATGGC
1 ATATATAATATGGC
32517977 ATATATAATATGGC
1 ATATATAATATGGC
*
32517991 ATGTATA
1 ATATATA
32517998 GCCAGACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.46, C:0.06, G:0.14, T:0.34
Consensus pattern (14 bp):
ATATATAATATGGC
Found at i:32524473 original size:18 final size:18
Alignment explanation
Indices: 32524450--32524488 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
32524440 CCAATTAGGC
32524450 CTTGAAAGTTTCTTTTCT
1 CTTGAAAGTTTCTTTTCT
32524468 CTTGAAAGTTTCTTTTCT
1 CTTGAAAGTTTCTTTTCT
32524486 CTT
1 CTT
32524489 ACCTAGGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.18, G:0.10, T:0.56
Consensus pattern (18 bp):
CTTGAAAGTTTCTTTTCT
Found at i:32526648 original size:43 final size:43
Alignment explanation
Indices: 32526526--32526693 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
32526516 AGCTCATACA
* * *
32526526 ATGCC-ATATCCCAGATATGGTCTTACATGTTATATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-TA-ATCACATAACG
* * * * *
32526570 ATGCCAATAG--CCAAACTATGGTCTCACACGAAATCAAATAACG
1 ATGCCAAT-GTCCCAGAC-ATGGTCTTACATGTAATCACATAACG
*
32526613 ATTG-CAATGTCCCAGACATGGTCTTACATGTAATCACATAATG
1 A-TGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAACG
* * *
32526656 GTGCCAATTTCCCAGACATGGTCTTACATATAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
32526694 ACTCGTTAAT
Statistics
Matches: 100, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
42 3 0.03
43 67 0.67
44 17 0.17
45 13 0.13
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAACG
Found at i:32533687 original size:42 final size:42
Alignment explanation
Indices: 32533640--32533843 Score: 187
Period size: 42 Copynumber: 4.8 Consensus size: 42
32533630 AGGGTTACTA
* * *
32533640 AGACTACATGTAGGACCATATCAGGGATATAGCATCAATATG
1 AGACTACGTGTAAGACCATATCAGGGATATGGCATCAATATG
* **
32533682 AGACTACGTATAAGACCATATTTGGGATATGGCATCAATATG
1 AGACTACGTGTAAGACCATATCAGGGATATGGCATCAATATG
* **
32533724 AGACTACGTGTAAGACCATATCTA-AGATATGGCATTGATATG
1 AGACTACGTGTAAGACCATATC-AGGGATATGGCATCAATATG
* * * * * * * *
32533766 AGACTTCGTGTAAGACCATAGCTGGGCTGTTGGCAGCGATACG
1 AGACTACGTGTAAGACCATATCAGGGAT-ATGGCATCAATATG
* * *
32533809 AGA-TCCCATGTAAGACCATATCTGGGATATGGCAT
1 AGACT-ACGTGTAAGACCATATCAGGGATATGGCAT
32533844 TGGTATGGTA
Statistics
Matches: 131, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
42 99 0.76
43 32 0.24
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (42 bp):
AGACTACGTGTAAGACCATATCAGGGATATGGCATCAATATG
Found at i:32533838 original size:85 final size:84
Alignment explanation
Indices: 32533640--32533850 Score: 226
Period size: 84 Copynumber: 2.5 Consensus size: 84
32533630 AGGGTTACTA
* * * ** **
32533640 AGACTACATGTAGGACCATATCAGGGATATAGCATCAATATGAGACTACGTATAAGACCATATTT
1 AGACTACATGTAAGACCATATCTGGGATATGGCATTGATATGAGACTACGTATAAGACCATAGCT
* *
32533705 GGGATATGGCATCAATATG
66 GGGATATGGCAGCAATACG
* ** * *
32533724 AGACTACGTGTAAGACCATATCTAAGATATGGCATTGATATGAGACTTCGTGTAAGACCATAGCT
1 AGACTACATGTAAGACCATATCTGGGATATGGCATTGATATGAGACTACGTATAAGACCATAGCT
* * *
32533789 GGGCTGTTGGCAGCGATACG
66 GGGAT-ATGGCAGCAATACG
* *
32533809 AGA-TCCCATGTAAGACCATATCTGGGATATGGCATTGGTATG
1 AGACT-ACATGTAAGACCATATCTGGGATATGGCATTGATATG
32533851 GTACTATGAG
Statistics
Matches: 103, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
84 58 0.56
85 45 0.44
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.27
Consensus pattern (84 bp):
AGACTACATGTAAGACCATATCTGGGATATGGCATTGATATGAGACTACGTATAAGACCATAGCT
GGGATATGGCAGCAATACG
Found at i:32535013 original size:20 final size:20
Alignment explanation
Indices: 32534983--32535034 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
32534973 CGGCCTACCT
*
32534983 ACACAGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
*
32535003 ATACGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
32535023 ACACGGGCGTGT
1 ACACGGGCGTGT
32535035 GGCTCTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.21, C:0.35, G:0.31, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:32537440 original size:31 final size:31
Alignment explanation
Indices: 32537402--32537465 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
32537392 CCTTTTCATA
32537402 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
32537433 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
32537464 TT
1 TT
32537466 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:32537708 original size:24 final size:24
Alignment explanation
Indices: 32537671--32537799 Score: 161
Period size: 24 Copynumber: 5.4 Consensus size: 24
32537661 CTGGAGGCCT
*
32537671 AGCCTCTTTTAATAACTAGGGCAAA
1 AGCC-CTTTTAATAACTAGGGCATA
*
32537696 AGCCCTTTCAATAACTAGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
*
32537720 AGCCCTTTT-ATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
* *
32537743 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
* **
32537767 AGCCCTTTTGATAACGGGGGCATA
1 AGCCCTTTTAATAACTAGGGCATA
*
32537791 AGACCTTTT
1 AGCCCTTTT
32537800 TCACTTCCTC
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
23 22 0.23
24 71 0.73
25 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTAGGGCATA
Found at i:32537734 original size:47 final size:48
Alignment explanation
Indices: 32537671--32537781 Score: 152
Period size: 47 Copynumber: 2.3 Consensus size: 48
32537661 CTGGAGGCCT
32537671 AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACTAGGGCATA
1 AGCC-CTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACTAGGGCATA
* * ** *
32537720 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACTAGGGCATA
*
32537767 AGCCCTTTTGATAAC
1 AGCCCTTTTAATAAC
32537782 GGGGGCATAA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
47 42 0.75
48 10 0.18
49 4 0.07
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACTAGGGCATA
Found at i:32537764 original size:71 final size:72
Alignment explanation
Indices: 32537656--32537799 Score: 184
Period size: 71 Copynumber: 2.0 Consensus size: 72
32537646 TGCTTTATCA
* *
32537656 TATAACTGGAGGCCTAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACTAGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACGAGGGCATAA
*
32537721 GCCCTTT
66 GACCTTT
* * * ** *
32537728 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACGGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACGAGGGCATA
32537791 AGACCTTT
65 AGACCTTT
32537799 T
1 T
32537800 TCACTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
71 49 0.79
72 13 0.21
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACGAGGGCATAA
GACCTTT
Found at i:32537875 original size:20 final size:20
Alignment explanation
Indices: 32537850--32537909 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
32537840 TATGATTACC
32537850 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
32537870 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
32537890 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
32537910 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:32537880 original size:11 final size:11
Alignment explanation
Indices: 32537850--32537904 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32537840 TATGATTACC
32537850 TCATGTGCATA
1 TCATGTGCATA
*
32537861 TCA--TACATA
1 TCATGTGCATA
32537870 TCATGTGCATA
1 TCATGTGCATA
* *
32537881 TCA--TACATT
1 TCATGTGCATA
32537890 TCATGTGCATA
1 TCATGTGCATA
32537901 TCAT
1 TCAT
32537905 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:32537984 original size:25 final size:25
Alignment explanation
Indices: 32537952--32537999 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32537942 ATACATAAAC
* * *
32537952 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
32537977 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32538000 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:32544901 original size:46 final size:48
Alignment explanation
Indices: 32544850--32545066 Score: 206
Period size: 47 Copynumber: 4.6 Consensus size: 48
32544840 ATGGTTGAGC
*
32544850 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGAGATGCAACAGG
* *
32544897 -TCCGAACTCGTTGAGTTGAGTCCGAG-T--TTGTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGAGATGCAAC-AGG
* *
32544942 CATCCGAACTCGTTGAGTTGAGTCCGAG-T--TTGTGAGATGTAACTAGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGAGATGCAAC-AGG
*
32544989 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATG-GATGCGA-AGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGAGATGCAACAGG
* * * *
32545037 -CCCGAGCTTGTTGAGTTGAGTCTGAGTTCA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
32545067 CTTAGGGGCA
Statistics
Matches: 151, Mismatches: 10, Indels: 19
0.84 0.06 0.11
Matches are distributed among these distances:
42 4 0.03
43 6 0.04
45 3 0.02
46 52 0.34
47 73 0.48
48 4 0.03
50 5 0.03
51 4 0.03
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGAGATGCAACAGG
Found at i:32544966 original size:47 final size:47
Alignment explanation
Indices: 32544848--32545018 Score: 244
Period size: 47 Copynumber: 3.7 Consensus size: 47
32544838 GGATGGTTGA
* * *
32544848 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAG
32544896 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAG
32544941 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAG
32544988 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT
32545019 CATTTATGGA
Statistics
Matches: 115, Mismatches: 3, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
42 4 0.03
43 6 0.05
45 3 0.03
46 26 0.23
47 75 0.65
48 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:32570065 original size:47 final size:47
Alignment explanation
Indices: 32569996--32570167 Score: 156
Period size: 47 Copynumber: 3.7 Consensus size: 47
32569986 GTATAATGCC
* *
32569996 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATTAAGTT
1 GATGCCATGTCCCAGACATGGTCATACACTGACTCATCCATTAAGTT
* **
32570043 GATGCCATGTCCCAGACATGGTCATACATTGACTC-TCACATATCCGTGCT
1 GATGCCATGTCCCAGACATGGTCATACACTGACTCATC-CAT-TAAGT--T
* * * * * *
32570093 GAAGCCATGCCCCAGACATGGTCTTACACTGACACAT-C-TTGTAGCT
1 GATGCCATGTCCCAGACATGGTCATACACTGACTCATCCATT-AAGTT
*
32570139 GAT-ACATGTCCCAGACAT-GTCATACACTG
1 GATGCCATGTCCCAGACATGGTCATACACTG
32570168 GCTTACATCT
Statistics
Matches: 102, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
44 10 0.10
45 13 0.13
46 5 0.05
47 36 0.35
48 5 0.05
49 1 0.01
50 31 0.30
51 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCATACACTGACTCATCCATTAAGTT
Found at i:32570176 original size:46 final size:44
Alignment explanation
Indices: 32570098--32570212 Score: 124
Period size: 46 Copynumber: 2.5 Consensus size: 44
32570088 GTGCTGAAGC
* * *
32570098 CATGCCCCAGACATGGTCTTACACTGACACATCTTGTA-GCTGATA
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCG-AGGCCGATA
* * *
32570143 CATGTCCCAGACATGTCATACACTGGCTTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGAGGCCGATA
*
32570189 CATGTCCCAGACATATCTTACACT
1 CATGTCCCAGACATGTCTTACACT
32570213 AGCACACAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
44 11 0.19
45 14 0.24
46 34 0.58
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGAGGCCGATA
Found at i:32575168 original size:29 final size:28
Alignment explanation
Indices: 32575134--32575236 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
32575124 TAATCGATCG
*
32575134 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
32575163 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
32575192 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
32575221 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32575237 ATCTCGTCGC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 61 0.91
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:32583282 original size:29 final size:28
Alignment explanation
Indices: 32583248--32583350 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
32583238 TAATCGATCA
*
32583248 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
* *
32583277 CGCACACATAGTGCAATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
32583306 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
*
32583335 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32583351 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 59 0.91
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:32588578 original size:46 final size:45
Alignment explanation
Indices: 32588456--32588581 Score: 153
Period size: 46 Copynumber: 2.8 Consensus size: 45
32588446 TGATATGTGT
* * * *
32588456 GCTAATGTAAGACATGTCTGGGACATGCATTAGCCACAATATGAGA
1 GCTAATGTAAGACATGTCTGGGACATGCA-TCGGCACAAGACGAGA
* * *
32588502 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCATTAAGACGAGA
1 GCTAATGTAAGACATGTCTGGGACATGCATCGGCA-CAAGACGAGA
* *
32588548 GGTAATGTAAGACCTGTCTGGGACATGCATCGGC
1 GCTAATGTAAGACATGTCTGGGACATGCATCGGC
32588582 CCCGCGATAT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
45 4 0.06
46 64 0.94
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (45 bp):
GCTAATGTAAGACATGTCTGGGACATGCATCGGCACAAGACGAGA
Found at i:32588707 original size:49 final size:49
Alignment explanation
Indices: 32588643--32588768 Score: 171
Period size: 49 Copynumber: 2.6 Consensus size: 49
32588633 GTTGTGTGTC
* * *
32588643 AGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATAGATGAAATCT
1 AGTGTAAGACTTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCT
* * * * *
32588692 AGTGTAAGACTTGTCTGGGACATGGCATCGGCCTTGCTATATGAAAGCT
1 AGTGTAAGACTTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCT
32588741 AGTGTAAGACTGTGTCTGGGACATGGCA
1 AGTGTAAGACT-TGTCTGGGACATGGCA
32588769 CCGGTATCTT
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
49 52 0.76
50 16 0.24
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACTTGTCTGGGACATGGCATCGACATCGATAGATGAAAGCT
Found at i:32593228 original size:16 final size:18
Alignment explanation
Indices: 32593207--32593239 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
32593197 CATACTAGCT
32593207 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
32593223 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
32593240 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:32593789 original size:41 final size:42
Alignment explanation
Indices: 32593726--32593879 Score: 161
Period size: 41 Copynumber: 3.6 Consensus size: 42
32593716 TTTTATCAAA
* * * *
32593726 TCACCAGCATTTAGCCTACTAGGTTTTAAACCCGAGT-TCA-T
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAACCCGA-TATCATT
* *
32593767 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCATT
1 TCACCGGCATTTAGCCTGCTAGGCTTGAAACCCGATATCATT
* *
32593809 TCACCGGCATTGTAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATT
1 TCACCGGCATT-TAGCCTGCTAGGCTTGAA-ACCCG-ATA-TCATT
32593854 TCACCGGCATTATAGCCTGCTAGGCT
1 TCACCGGCATT-TAGCCTGCTAGGCT
32593880 CAAAGGCCCA
Statistics
Matches: 98, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
40 1 0.01
41 32 0.33
42 12 0.12
43 16 0.16
44 5 0.05
45 31 0.32
46 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (42 bp):
TCACCGGCATTTAGCCTGCTAGGCTTGAAACCCGATATCATT
Found at i:32593862 original size:45 final size:45
Alignment explanation
Indices: 32593766--32593938 Score: 230
Period size: 45 Copynumber: 3.9 Consensus size: 45
32593756 CCCGAGTTCA
* *
32593766 TTCACCGGCATT-TCGCCTGCTAGGCTTGAA-GCCCG-ATA-TCAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-AT
*
32593808 TTCACCGGCATTGTAGCCTGCTAGGCTCGAAGGCCCGAATAGTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTAT
* *
32593853 TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTAT
* *
32593898 CTCACCGGCATCATAGCCTGCTAGGCT-GAAAGGCCCGAATA
1 TTCACCGGCATTATAGCCTGCTAGGCTCG-AAGGCCCGAATA
32593939 TTACTGTACG
Statistics
Matches: 117, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
42 12 0.10
43 16 0.14
44 5 0.04
45 83 0.71
46 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (45 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTAT
Found at i:32602286 original size:30 final size:30
Alignment explanation
Indices: 32602250--32602528 Score: 115
Period size: 30 Copynumber: 9.4 Consensus size: 30
32602240 CATCGACTAG
32602250 TGAAAAGGGATAGCTTCGGCTATCAAAATA
1 TGAAAAGGGATAGCTTCGGCTATCAAAATA
* * * * *
32602280 TGAAAAGGGAT-GGTGACGACCATCAACA-A
1 TGAAAAGGGATAGCT-TCGGCTATCAAAATA
* * * * ** *
32602309 TGAAAAAGGAT-GGTGAT-GACCATTGAATTA
1 TGAAAAGGGATAGCT--TCGGCTATCAAAATA
* *
32602339 TGAAAAGGGATAGCTTCGGCTATCGAACTA
1 TGAAAAGGGATAGCTTCGGCTATCAAAATA
* *
32602369 TTAAAAGGGATAGCTTCGGTTATCGAAAA-A
1 TGAAAAGGGATAGCTTCGGCTATC-AAAATA
* * * * * *
32602399 TGAAAAAGGATAGTTTTGGTTATCTAATTA
1 TGAAAAGGGATAGCTTCGGCTATCAAAATA
* * ** * *
32602429 TGAAAAGGGAT-GATGGCAACCATCAACA-A
1 TGAAAAGGGATAGCT-TCGGCTATCAAAATA
* * * * * *
32602458 TGAAAAGGGAT-GGTGGCGACCATCGAACTA
1 TGAAAAGGGATAGCT-TCGGCTATCAAAATA
* *
32602488 TGAAAAGGGATAGCTTCGGCTATCGAACTA
1 TGAAAAGGGATAGCTTCGGCTATCAAAATA
*
32602518 TGGAAAGGGAT
1 TGAAAAGGGAT
32602529 GGAGACAACC
Statistics
Matches: 190, Mismatches: 49, Indels: 20
0.73 0.19 0.08
Matches are distributed among these distances:
29 52 0.27
30 132 0.69
31 6 0.03
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.23
Consensus pattern (30 bp):
TGAAAAGGGATAGCTTCGGCTATCAAAATA
Found at i:32602344 original size:29 final size:28
Alignment explanation
Indices: 32602278--32602346 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
32602268 GCTATCAAAA
32602278 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAA-GGATGGTGACGACCATCAAC
* * * *
32602307 AATGAAAAAGGATGGTGATGACCATTGAAT
1 TATG-AAAAGGATGGTGACGACCA-TCAAC
32602337 TATGAAAAGG
1 TATGAAAAGG
32602347 GATAGCTTCG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
29 23 0.70
30 10 0.30
ACGTcount: A:0.42, C:0.10, G:0.28, T:0.20
Consensus pattern (28 bp):
TATGAAAAGGATGGTGACGACCATCAAC
Found at i:32602460 original size:29 final size:30
Alignment explanation
Indices: 32602428--32602498 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 30
32602418 TTATCTAATT
32602428 ATGAAAAGGGATGATGGCAACCATC-AACA
1 ATGAAAAGGGATGATGGCAACCATCGAACA
* * *
32602457 ATGAAAAGGGATGGTGGCGACCATCGAACT
1 ATGAAAAGGGATGATGGCAACCATCGAACA
32602487 ATGAAAAGGGAT
1 ATGAAAAGGGAT
32602499 AGCTTCGGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
29 23 0.61
30 15 0.39
ACGTcount: A:0.41, C:0.14, G:0.30, T:0.15
Consensus pattern (30 bp):
ATGAAAAGGGATGATGGCAACCATCGAACA
Found at i:32602511 original size:149 final size:149
Alignment explanation
Indices: 32602250--32602528 Score: 414
Period size: 149 Copynumber: 1.9 Consensus size: 149
32602240 CATCGACTAG
* * *
32602250 TGAAAAGGGATAGCTTCGGCTATCAAAATATGAAAAGGGATGGTGACGACCATCAACAATGAAAA
1 TGAAAAAGGATAGCTTCGGCTATCAAAATATGAAAAGGGATGATGACAACCATCAACAATGAAAA
* * * *
32602315 AGGATGGTGATGACCATTGAATTATGAAAAGGGATAGCTTCGGCTATCGAACTATTAAAAGGGAT
66 AGGATGGTGACGACCATCGAACTATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGAT
32602380 AGCTTCGGTTATCGAAAAA
131 AGCTTCGGTTATCGAAAAA
* * * * * *
32602399 TGAAAAAGGATAGTTTTGGTTATCTAATTATGAAAAGGGATGATGGCAACCATCAACAATGAAAA
1 TGAAAAAGGATAGCTTCGGCTATCAAAATATGAAAAGGGATGATGACAACCATCAACAATGAAAA
* * *
32602464 GGGATGGTGGCGACCATCGAACTATGAAAAGGGATAGCTTCGGCTATCGAACTATGGAAAGGGAT
66 AGGATGGTGACGACCATCGAACTATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGAT
32602529 GGAGACAACC
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
149 114 1.00
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.23
Consensus pattern (149 bp):
TGAAAAAGGATAGCTTCGGCTATCAAAATATGAAAAGGGATGATGACAACCATCAACAATGAAAA
AGGATGGTGACGACCATCGAACTATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGAT
AGCTTCGGTTATCGAAAAA
Found at i:32607024 original size:39 final size:40
Alignment explanation
Indices: 32606923--32607224 Score: 404
Period size: 39 Copynumber: 7.7 Consensus size: 40
32606913 TCGAATGATG
* *
32606923 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
32606962 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
32607003 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32607042 TCCGGGTTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
32607081 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
32607120 TCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32607159 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
32607198 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32607225 AACGAGTAGC
Statistics
Matches: 238, Mismatches: 18, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
39 149 0.63
40 79 0.33
41 10 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:32611468 original size:24 final size:23
Alignment explanation
Indices: 32611440--32611484 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
32611430 AATTTAAATT
32611440 TTGAA-ATCTAAAAGAATAAAAAAA
1 TTGAATATCT-AAA-AATAAAAAAA
*
32611464 TTGAATTTCTAAAAATAAAAA
1 TTGAATATCTAAAAATAAAAA
32611485 TATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27
Consensus pattern (23 bp):
TTGAATATCTAAAAATAAAAAAA
Found at i:32612700 original size:9 final size:9
Alignment explanation
Indices: 32612686--32612710 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
32612676 TTACTTTTTA
32612686 ATCAATTCT
1 ATCAATTCT
32612695 ATCAATTCT
1 ATCAATTCT
32612704 ATCAATT
1 ATCAATT
32612711 TGAACACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.44
Consensus pattern (9 bp):
ATCAATTCT
Found at i:32616499 original size:29 final size:29
Alignment explanation
Indices: 32616465--32616540 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 29
32616455 GTGACAAGAT
32616465 TGGCACTAAGTGTGC-AAGCTTGAAA-TATA
1 TGGCACTAAGTGTGCGAA-CTT-AAATTATA
*
32616494 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
*
32616523 TGGCACTATGTGTGCGAA
1 TGGCACTAAGTGTGCGAA
32616541 ATCGATTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 3 0.07
29 38 0.88
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:32624481 original size:29 final size:29
Alignment explanation
Indices: 32624447--32624522 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 29
32624437 GTGACAAGAT
32624447 TGGCACTAAGTGTGC-AAGCTTGAAA-TATA
1 TGGCACTAAGTGTGCGAA-CTT-AAATTATA
*
32624476 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
*
32624505 TGGCACTATGTGTGCGAA
1 TGGCACTAAGTGTGCGAA
32624523 ATCGATTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 3 0.07
29 38 0.88
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:32632435 original size:27 final size:26
Alignment explanation
Indices: 32632385--32632442 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
32632375 ATTATAATAG
* *
32632385 AAAAT-ATAAAAATTATTTAGAATTTT
1 AAAATAATAAAAATTATATA-AAATTT
*
32632411 AAAATAATAAAATTTATATAAAATTT
1 AAAATAATAAAAATTATATAAAATTT
32632437 AAAATA
1 AAAATA
32632443 TTTACAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 16 0.57
27 12 0.43
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
AAAATAATAAAAATTATATAAAATTT
Found at i:32632857 original size:30 final size:29
Alignment explanation
Indices: 32632823--32632934 Score: 122
Period size: 29 Copynumber: 3.8 Consensus size: 29
32632813 CTAATTTTGT
*
32632823 TATTTTAAT-ATTCTTTTTCTATAATTTTAA
1 TATTTTAATAATT-TTTTTATA-AATTTTAA
**
32632853 TATTTTTGTAATTTTTTATATAAATTTTTAA
1 TATTTTAATAATTTTTT-TATAAA-TTTTAA
32632884 -ATTTTAATAATTTTTTTATAAATTTT-A
1 TATTTTAATAATTTTTTTATAAATTTTAA
*
32632911 TCATTTTAATAATTTTTATATAAA
1 T-ATTTTAATAATTTTTTTATAAA
32632935 AATATCAATT
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
27 1 0.01
28 4 0.06
29 27 0.38
30 27 0.38
31 12 0.17
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (29 bp):
TATTTTAATAATTTTTTTATAAATTTTAA
Found at i:32632945 original size:29 final size:29
Alignment explanation
Indices: 32632865--32632946 Score: 103
Period size: 29 Copynumber: 2.8 Consensus size: 29
32632855 TTTTTGTAAT
* *
32632865 TTTTTATATAAATTTTTAAATTTTAATAA
1 TTTTTATATAAATTTATCAATTTTAATAA
*
32632894 TTTTTTTATAAATTTTATC-ATTTTAATAA
1 TTTTTATATAAA-TTTATCAATTTTAATAA
**
32632923 TTTTTATATAAAAATATCAATTTT
1 TTTTTATATAAATTTATCAATTTT
32632947 TATCACATGA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.09
29 37 0.82
30 4 0.09
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTTATATAAATTTATCAATTTTAATAA
Found at i:32632945 original size:58 final size:60
Alignment explanation
Indices: 32632824--32632946 Score: 137
Period size: 58 Copynumber: 2.1 Consensus size: 60
32632814 TAATTTTGTT
* ** ** *
32632824 ATTTTAATATTCTTTTTCTATAATTTTAATATTTTTGTAATTTTTTATATAAATTTTTAA
1 ATTTTAATATTCTTTTTATATAATTTTAATATTTTAATAATTTTTTATATAAAAATATAA
*
32632884 ATTTTAATAATT-TTTTTATA-AATTTT-ATCATTTTAATAA-TTTTTATATAAAAATATCA
1 ATTTTAAT-ATTCTTTTTATATAATTTTAAT-ATTTTAATAATTTTTTATATAAAAATATAA
32632942 ATTTT
1 ATTTT
32632947 TATCACATGA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
58 22 0.41
59 14 0.26
60 15 0.28
61 3 0.06
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (60 bp):
ATTTTAATATTCTTTTTATATAATTTTAATATTTTAATAATTTTTTATATAAAAATATAA
Found at i:32633542 original size:5 final size:5
Alignment explanation
Indices: 32633532--32633556 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32633522 ATACATTAAA
32633532 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
32633557 TAAATAACTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:32635079 original size:23 final size:24
Alignment explanation
Indices: 32635053--32635097 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
32635043 AATTGTTATG
32635053 AACACGTTCATG-AACACTAAACA
1 AACACGTTCATGAAACACTAAACA
* *
32635076 AACATGTTCTTGAAACACTAAA
1 AACACGTTCATGAAACACTAAA
32635098 TGAACCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.22
Consensus pattern (24 bp):
AACACGTTCATGAAACACTAAACA
Found at i:32637366 original size:40 final size:40
Alignment explanation
Indices: 32637293--32637469 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
32637283 ACCCAAGTAT
* *
32637293 CTTCGGGAT-TTAG-CCGGATATAACAACTTGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
32637332 CTTCGGGTCTTAGCCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
32637372 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
32637412 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
32637452 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
32637470 TTATCATCCG
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 101 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:32637426 original size:80 final size:79
Alignment explanation
Indices: 32637293--32637469 Score: 241
Period size: 80 Copynumber: 2.2 Consensus size: 79
32637283 ACCCAAGTAT
* * *
32637293 CTTCGGGAT-TTAGCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGACATAGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGACATAGC
32637357 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
32637372 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGACATAG
*
32637436 CAACTCGCACGAATGC
64 CAACTCGCACAAATGC
*
32637452 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
32637470 TTATCATCCG
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 11 0.13
80 74 0.85
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGACATAGCA
ACTCGCACAAATGC
Found at i:32638530 original size:31 final size:31
Alignment explanation
Indices: 32638495--32638557 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
32638485 TCATCAAAAT
32638495 TCAAGTAAAACAATCAAAATTCCTTCCTTTA
1 TCAAGTAAAACAATCAAAATTCCTTCCTTTA
32638526 TCAAGTAAAACAATCAAAATTCCTTCCTTTA
1 TCAAGTAAAACAATCAAAATTCCTTCCTTTA
32638557 T
1 T
32638558 AACCATAGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.33
Consensus pattern (31 bp):
TCAAGTAAAACAATCAAAATTCCTTCCTTTA
Found at i:32643687 original size:40 final size:40
Alignment explanation
Indices: 32643642--32643809 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
32643632 CGGAATATAA
32643642 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
32643682 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
32643722 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32643762 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
32643802 CCGGATAT
1 CCGGATAT
32643810 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32643792 original size:80 final size:80
Alignment explanation
Indices: 32643658--32643807 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
32643648 ATAATCACGT
*
32643658 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
32643722 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
32643738 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
32643801 CCCGGAT
64 CCCGGAT
32643808 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:32648592 original size:40 final size:40
Alignment explanation
Indices: 32648525--32648701 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
32648515 ACCCAAGTAT
*
32648525 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
32648564 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
32648604 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
32648644 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
32648684 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
32648702 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:32653635 original size:40 final size:40
Alignment explanation
Indices: 32653527--32653636 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
32653517 ATTGAATGAT
* * * * *
32653527 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
32653567 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
32653607 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
32653637 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:32653651 original size:40 final size:39
Alignment explanation
Indices: 32653527--32653676 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
32653517 ATTGAATGAT
* * * * * * *
32653527 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
32653567 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
32653607 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
32653647 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
32653677 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:32656224 original size:30 final size:30
Alignment explanation
Indices: 32656131--32656226 Score: 92
Period size: 30 Copynumber: 3.2 Consensus size: 30
32656121 TACCCGGATG
* *
32656131 AATTAAGTGTAGTACTTAAAGCCTCATGT-
1 AATTTAGTGTAGTATTTAAAGCCTCATGTA
**
32656160 AATTTAGTGTA-TAGGTGAAAAG-CTACAT-TGA
1 AATTTAGTGTAGTA--TTTAAAGCCT-CATGT-A
32656191 AATTTAGTGTAGTATTTAAAGCCTCATGTA
1 AATTTAGTGTAGTATTTAAAGCCTCATGTA
32656221 AATTTA
1 AATTTA
32656227 CTCCAAAACT
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
28 2 0.04
29 13 0.25
30 22 0.42
31 14 0.26
32 2 0.04
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (30 bp):
AATTTAGTGTAGTATTTAAAGCCTCATGTA
Found at i:32656440 original size:331 final size:331
Alignment explanation
Indices: 32655838--32656465 Score: 1031
Period size: 331 Copynumber: 1.9 Consensus size: 331
32655828 GTCTTCTGTC
*
32655838 TATAGGTGAAAAGCTATATTGAAATTTAGTGTAATACTTAAAGCCTCATGTAAATTTACTCCAAA
1 TATAGGTGAAAAGCTACATTGAAATTTAGTGTAATACTTAAAGCCTCATGTAAATTTACTCCAAA
* * * * *
32655903 ACTGGAAGTAAACCTCAGATTGCGATTAGAAATAATGGACAGTGGTACACCGTGTAATCTAACAA
66 ACTAGAAGTAAACCTCAGATCGCGATCAGAAATAATGGACAATGGTACACCGTGCAATCTAACAA
* *
32655968 TCTCATAAATGTATAACTGTAACAAACCAAATGGAACCCAATCTTTGACTTTCACTTGCTAAAAT
131 TCTCATAAATGTATAACTATAACAAACCAAATGGAACCCAATCTTCGACTTTCACTTGCTAAAAT
* * * * *
32656033 ACCAAACACTTAGCTACAAAGTCAAAAATTTCCTATTTCATTCTCAGCCATTAGTACATTTGTTT
196 ACCAAACACTTAGCTACAAAGTAAAAAATTTCCTATTTCATTCCCAGCCACTAGCACATCTGTTT
*
32656098 TCAGTCACAATACATCTTAGTACTACCCGGATGAATTAAGTGTAGTACTTAAAGCCTCATGTAAT
261 TCAGTCACAATACATCTTAGTACTACCCAGATGAATTAAGTGTAGTACTTAAAGCCTCATGTAAT
32656163 TTAGTG
326 TTAGTG
* *
32656169 TATAGGTGAAAAGCTACATTGAAATTTAGTGTAGTATTTAAAGCCTCATGTAAATTTACTCCAAA
1 TATAGGTGAAAAGCTACATTGAAATTTAGTGTAATACTTAAAGCCTCATGTAAATTTACTCCAAA
*
32656234 ACTAGAAGTAAACCTCAGATCGCGATCAGAAATAATGGACAATGGTACACTGTGCAATCTAACAA
66 ACTAGAAGTAAACCTCAGATCGCGATCAGAAATAATGGACAATGGTACACCGTGCAATCTAACAA
** * * *
32656299 TCTCATAAATGTATAACTATAACAAACCAAATGGAACCTGATGTTCGGCTTTCACTTGCTAACAT
131 TCTCATAAATGTATAACTATAACAAACCAAATGGAACCCAATCTTCGACTTTCACTTGCTAAAAT
* *
32656364 ACCAAACATTTAGCTACAAAGTAAAAAATTTCCTATTTTATTCCCAGCCACTAGCACATCTGTTT
196 ACCAAACACTTAGCTACAAAGTAAAAAATTTCCTATTTCATTCCCAGCCACTAGCACATCTGTTT
*
32656429 TTAGTCACAATACATCTTAGTACTACCCAGATGAATT
261 TCAGTCACAATACATCTTAGTACTACCCAGATGAATT
32656466 GAATATGTAC
Statistics
Matches: 272, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
331 272 1.00
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (331 bp):
TATAGGTGAAAAGCTACATTGAAATTTAGTGTAATACTTAAAGCCTCATGTAAATTTACTCCAAA
ACTAGAAGTAAACCTCAGATCGCGATCAGAAATAATGGACAATGGTACACCGTGCAATCTAACAA
TCTCATAAATGTATAACTATAACAAACCAAATGGAACCCAATCTTCGACTTTCACTTGCTAAAAT
ACCAAACACTTAGCTACAAAGTAAAAAATTTCCTATTTCATTCCCAGCCACTAGCACATCTGTTT
TCAGTCACAATACATCTTAGTACTACCCAGATGAATTAAGTGTAGTACTTAAAGCCTCATGTAAT
TTAGTG
Found at i:32666619 original size:3 final size:3
Alignment explanation
Indices: 32666611--32666659 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
32666601 TTTTAATAAA
32666611 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32666659 A
1 A
32666660 AAGGGGGTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:32669828 original size:25 final size:25
Alignment explanation
Indices: 32669793--32669840 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
32669783 TTGTAGAGAG
32669793 AAAATTCTCTAAAGAAATTATTTCAA
1 AAAATTCTCTAAAGAAATT-TTTCAA
*
32669819 AAAATT-TCTAAAGATATTTTTC
1 AAAATTCTCTAAAGAAATTTTTC
32669841 TTATTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 11 0.52
26 6 0.29
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (25 bp):
AAAATTCTCTAAAGAAATTTTTCAA
Found at i:32670384 original size:44 final size:44
Alignment explanation
Indices: 32670321--32670409 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
32670311 GTTTAAACTG
32670321 ATACTAAGTAGTATTACATGGTCAAGTCGTAGAATGGAAATACA
1 ATACTAAGTAGTATTACATGGTCAAGTCGTAGAATGGAAATACA
32670365 ATACTAAGTAGTATTACATGGTCAAGTCGTAGAATGGAAATACA
1 ATACTAAGTAGTATTACATGGTCAAGTCGTAGAATGGAAATACA
32670409 A
1 A
32670410 CTTGTATTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (44 bp):
ATACTAAGTAGTATTACATGGTCAAGTCGTAGAATGGAAATACA
Found at i:32675617 original size:29 final size:29
Alignment explanation
Indices: 32675584--32675639 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
32675574 AAGTTATTTT
32675584 GGATTTATAATTTGATAATCTCTTTTTAA
1 GGATTTATAATTTGATAATCTCTTTTTAA
32675613 GGATTTATAATTTGATAATCTCTTTTT
1 GGATTTATAATTTGATAATCTCTTTTT
32675640 TTTATTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.54
Consensus pattern (29 bp):
GGATTTATAATTTGATAATCTCTTTTTAA
Found at i:32676302 original size:33 final size:32
Alignment explanation
Indices: 32676248--32676309 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
32676238 ATTGAAGACG
32676248 TACTATATTTAATATTTATTATAAATTATTTA
1 TACTATATTTAATATTTATTATAAATTATTTA
*
32676280 TACTA-ATTTCAAGTATTTATTATTAATTAT
1 TACTATATTT-AA-TATTTATTATAAATTAT
32676310 ATCTTCATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 4 0.15
32 7 0.26
33 16 0.59
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (32 bp):
TACTATATTTAATATTTATTATAAATTATTTA
Found at i:32677531 original size:22 final size:22
Alignment explanation
Indices: 32677505--32677548 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
32677495 AAATTTGAGA
*
32677505 GAATGTGTTGCGCAAAAACAAC
1 GAATGTGTTACGCAAAAACAAC
32677527 GAATGTGTTACGCAAAAACAAC
1 GAATGTGTTACGCAAAAACAAC
32677549 ATTTATATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.18
Consensus pattern (22 bp):
GAATGTGTTACGCAAAAACAAC
Found at i:32681577 original size:49 final size:49
Alignment explanation
Indices: 32681505--32681604 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
32681495 TTAAAGAACA
*
32681505 ATATACCATGATAATGCTTCTTGGATTATTATGTAATAGTCATCACGGT
1 ATATACCATGAGAATGCTTCTTGGATTATTATGTAATAGTCATCACGGT
32681554 ATATACCATGAGAATGCTTCTTGGATTATTATGTAATAGTCATCACGGT
1 ATATACCATGAGAATGCTTCTTGGATTATTATGTAATAGTCATCACGGT
32681603 AT
1 AT
32681605 TTCTCATAGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (49 bp):
ATATACCATGAGAATGCTTCTTGGATTATTATGTAATAGTCATCACGGT
Found at i:32683604 original size:12 final size:13
Alignment explanation
Indices: 32683579--32683609 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
32683569 TTTATGAAAA
32683579 TATTTTCTATTTT
1 TATTTTCTATTTT
32683592 TATTTTC-ATTTT
1 TATTTTCTATTTT
32683604 TATTTT
1 TATTTT
32683610 TCATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.77
Consensus pattern (13 bp):
TATTTTCTATTTT
Found at i:32684174 original size:19 final size:17
Alignment explanation
Indices: 32684146--32684194 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
32684136 ATTTTCATAC
*
32684146 AAAATTATTATAATATTTA
1 AAAATAATTATAATA--TA
*
32684165 AAAATAATTATGATATA
1 AAAATAATTATAATATA
32684182 AAAATAAATTATA
1 AAAAT-AATTATA
32684195 TTTGTAAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 7 0.27
18 6 0.23
19 13 0.50
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
AAAATAATTATAATATA
Found at i:32688237 original size:40 final size:40
Alignment explanation
Indices: 32688181--32688445 Score: 299
Period size: 40 Copynumber: 6.7 Consensus size: 40
32688171 TAACGGGGTC
* * *
32688181 AAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCT
*
32688221 AAGTCCCGAAGGCATTTGTGCGAGTTACTACA-TCCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTA-ATTCCGGGCT
* *
32688261 AAGTCCCGAAGGCAATTGTGCGAGAT-ACTAATTCCGGGCC
1 AAGTCCCGAAGGCATTTGTGCGAG-TGACTAATTCCGGGCT
* * *
32688301 AAGTCCTGAAGGCATTGGTGCGAGTTACTAATTCCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCT
32688341 AAGTCCCGAAGGCATTTGTGCGAGTTG-CT-ATATCCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAG-TGACTAAT-TCCGGGCT
* * * *
32688381 AAGACCCGAAGACATTTGTGCTAGTGAC-CATATCCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCT
* * *
32688421 AAGACCCGACGGC-CTTGTGCGAGTG
1 AAGTCCCGAAGGCATTTGTGCGAGTG
32688446 GTTATATCCG
Statistics
Matches: 197, Mismatches: 20, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
39 16 0.08
40 178 0.90
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCT
Found at i:32688400 original size:120 final size:120
Alignment explanation
Indices: 32688180--32688401 Score: 345
Period size: 120 Copynumber: 1.9 Consensus size: 120
32688170 CTAACGGGGT
* * *
32688180 CAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 CAAGTCCCGAAGACATTGGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
* *
32688245 TTACTACATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGATACTAATTCCGGGC
66 TTACTACATCCGGGCTAAGACCCGAAGACAATTGTGCGAGATACTAATTCCGGGC
* * *
32688300 CAAGTCCTGAAGGCATTGGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 CAAGTCCCGAAGACATTGGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
* * *
32688365 TTGCTATATCCGGGCTAAGACCCGAAGACATTTGTGC
66 TTACTACATCCGGGCTAAGACCCGAAGACAATTGTGC
32688402 TAGTGACCAT
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 91 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
CAAGTCCCGAAGACATTGGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTACATCCGGGCTAAGACCCGAAGACAATTGTGCGAGATACTAATTCCGGGC
Found at i:32690908 original size:26 final size:26
Alignment explanation
Indices: 32690879--32690989 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
32690869 AGCATTGCTG
* *
32690879 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
32690905 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
32690932 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
32690959 CCAGATCAGATAAATATGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
32690986 CCAG
1 CCAG
32690990 GATGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 13 0.17
27 62 0.81
28 2 0.03
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:32692430 original size:24 final size:24
Alignment explanation
Indices: 32692395--32692494 Score: 155
Period size: 24 Copynumber: 4.2 Consensus size: 24
32692385 CCAACAGTGT
* *
32692395 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
32692419 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
32692443 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
32692467 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
32692491 TCTC
1 TCTC
32692495 TTGATAGACT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.25, C:0.40, G:0.02, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:32696809 original size:31 final size:31
Alignment explanation
Indices: 32696743--32696815 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 31
32696733 TTTTTTTTCA
** *
32696743 TTTAGTCACTCAACTTTTTGAAATTAAACAT
1 TTTAGTCACTCAACTTTTCAAAATTAAACAG
* * *
32696774 TTTAGTCACTCACCTTTTCAAAATTGAATAG
1 TTTAGTCACTCAACTTTTCAAAATTAAACAG
*
32696805 TTTAGTTACTC
1 TTTAGTCACTC
32696816 TCTTGTTAGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (31 bp):
TTTAGTCACTCAACTTTTCAAAATTAAACAG
Found at i:32701787 original size:46 final size:46
Alignment explanation
Indices: 32701737--32701912 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
32701727 TGGTTGAGCA
32701737 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32701783 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32701828 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32701876 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32701913 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32701893 original size:93 final size:93
Alignment explanation
Indices: 32701734--32701905 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32701724 GGATGGTTGA
* *
32701734 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32701799 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32701827 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32701892 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32701906 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32709347 original size:46 final size:46
Alignment explanation
Indices: 32709297--32709472 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
32709287 TGGTTGAGCA
32709297 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32709343 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32709388 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32709436 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32709473 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32709453 original size:93 final size:93
Alignment explanation
Indices: 32709294--32709465 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32709284 GGATGGTTGA
* *
32709294 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32709359 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32709387 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32709452 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32709466 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32723030 original size:38 final size:40
Alignment explanation
Indices: 32722921--32723104 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
32722911 TCGAATGATG
* * * *
32722921 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAAGCATTTGTGC-GAGTTACTAAA
* *
32722961 TCCGGACTAAGAT-CCG-AAGACATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAAG-CATTTGTGCGAGTTACTAAA
* *
32723001 TTCGGGCTAAG-CCC-AAAGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTAAA
* *
32723039 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTA-AA
* *
32723080 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAAGCATTTG
32723105 AGCAAGTAGC
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
38 27 0.22
39 10 0.08
40 73 0.61
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTAAA
Found at i:32726210 original size:62 final size:62
Alignment explanation
Indices: 32726133--32726257 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
32726123 TTTCATGGAT
* *
32726133 GACTTTTCAGCGTTTGGAGATACGTACGATGATTGCTTAGCCAATTTGGCTAAGGTGCTTAG
1 GACTTTTCAGCGTTTGGAGATACGTACGATGATTGCTTAGCCAATCTGGCTAAGGTACTTAG
32726195 GACTTTTCAGCGTTTGGAGATACGTACGATGATTGCTTAGCCAATCTGGCTAAGGTACTTAG
1 GACTTTTCAGCGTTTGGAGATACGTACGATGATTGCTTAGCCAATCTGGCTAAGGTACTTAG
32726257 G
1 G
32726258 CCATGCGAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (62 bp):
GACTTTTCAGCGTTTGGAGATACGTACGATGATTGCTTAGCCAATCTGGCTAAGGTACTTAG
Done.