Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 111 of 425
Found at i:32732351 original size:43 final size:43
Alignment explanation
Indices: 32732303--32732652 Score: 603
Period size: 43 Copynumber: 8.2 Consensus size: 43
32732293 GCATGAAACT
*
32732303 CGGTGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
32732346 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
32732389 CGATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
32732432 CGATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
32732475 CGATGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
32732518 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTG-
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
32732560 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* **
32732603 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
32732646 CGGTGAT
1 CGGTGAT
32732653 TCGAGCAAGG
Statistics
Matches: 296, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
42 42 0.14
43 254 0.86
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.31
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:32732909 original size:29 final size:28
Alignment explanation
Indices: 32732809--32732967 Score: 124
Period size: 29 Copynumber: 5.5 Consensus size: 28
32732799 ATGATTAGAG
* *
32732809 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAACCGA
** **
32732838 GCACTATGTGTGCGAGA-TCAGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
32732866 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAACCGA
** **
32732896 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* * *
32732924 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCGAATTCTTTAACCGA
32732953 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
32732968 GATCGGTCAG
Statistics
Matches: 99, Mismatches: 24, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
28 27 0.27
29 64 0.65
30 8 0.08
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:32732984 original size:28 final size:28
Alignment explanation
Indices: 32732838--32732992 Score: 89
Period size: 29 Copynumber: 5.4 Consensus size: 28
32732828 CTTTAACCGA
* * *
32732838 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* ** * * *
32732867 GCACTGTGTGTGCGA-ATTCCTTTAACCGA
1 GCACTATGTGTGCGAGA-T-CGGTCACTGG
* *
32732896 GCACTATGTGTGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* * * * *
32732925 GCACTGTGTGTGCGAGTTC-TTCAACCGA
1 GCACTATGTGTGCGAGATCGGTC-ACTGG
*
32732953 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCACTGG
*
32732981 GCACTAAGTGTG
1 GCACTATGTGTG
32732993 TGAAATGAGA
Statistics
Matches: 94, Mismatches: 26, Indels: 13
0.71 0.20 0.10
Matches are distributed among these distances:
28 37 0.39
29 51 0.54
30 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCACTGG
Found at i:32732994 original size:58 final size:58
Alignment explanation
Indices: 32732806--32732974 Score: 295
Period size: 58 Copynumber: 2.9 Consensus size: 58
32732796 CGAATGATTA
* *
32732806 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
32732864 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
32732922 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
32732975 CAGTGGGCAC
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
57 31 0.29
58 76 0.71
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:32738025 original size:20 final size:20
Alignment explanation
Indices: 32738002--32738039 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32737992 CACATCCAAA
*
32738002 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
32738022 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
32738040 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:32744360 original size:28 final size:28
Alignment explanation
Indices: 32744314--32744382 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
32744304 TTTAAAACCC
*
32744314 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
32744341 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
32744369 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
32744383 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:32746009 original size:20 final size:20
Alignment explanation
Indices: 32745986--32746023 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32745976 CACATCCAAA
*
32745986 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
32746006 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
32746024 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:32749730 original size:26 final size:26
Alignment explanation
Indices: 32749701--32749752 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
32749691 GATTCAAATA
32749701 ACAAGTGAAATCTAGGTGGATTTTTC
1 ACAAGTGAAATCTAGGTGGATTTTTC
*
32749727 ACAAGTGAAGTCTAGGTGGATTTTTC
1 ACAAGTGAAATCTAGGTGGATTTTTC
32749753 CTTAGGTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (26 bp):
ACAAGTGAAATCTAGGTGGATTTTTC
Found at i:32752603 original size:28 final size:28
Alignment explanation
Indices: 32752570--32752648 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
32752560 GAATCATTCG
*
32752570 ATATTTAACACACTAAGTGTCATTCTCA
1 ATATTTCACACACTAAGTGTCATTCTCA
* * *
32752598 ATATTTCACACACTATGTGTTATTCTCC
1 ATATTTCACACACTAAGTGTCATTCTCA
*
32752626 ATGTTTCACACACTAAGTGTCAT
1 ATATTTCACACACTAAGTGTCAT
32752649 ATTTGATGTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (28 bp):
ATATTTCACACACTAAGTGTCATTCTCA
Found at i:32752657 original size:28 final size:28
Alignment explanation
Indices: 32752577--32752672 Score: 72
Period size: 28 Copynumber: 3.4 Consensus size: 28
32752567 TCGATATTTA
* *
32752577 ACACACTAAGTGTCAT-TCTCAATATTTC
1 ACACACTAAGTGTCATAT-TTAATGTTTC
* *
32752605 ACACACTATGTGT--TATTCTCCATGTTTC
1 ACACACTAAGTGTCATATT-T-AATGTTTC
* **
32752633 ACACACTAAGTGTCATATTTGATGTCCC
1 ACACACTAAGTGTCATATTTAATGTTTC
*
32752661 ACACGCTAAGTG
1 ACACACTAAGTG
32752673 CTGTACATAG
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
26 2 0.04
27 1 0.02
28 46 0.85
29 1 0.02
30 4 0.07
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.34
Consensus pattern (28 bp):
ACACACTAAGTGTCATATTTAATGTTTC
Found at i:32756483 original size:40 final size:40
Alignment explanation
Indices: 32756389--32756523 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
32756379 CAGTTATTTG
* * *
32756389 TGGCACTTAGTGTGCGATACAACATAGCTT-TGACTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCTG-CTATATA
*
32756429 TGGCATTTAGTGTGTGATTCGACATAGCTTCTGCTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCTGCTATATA
* * ** *
32756469 TGGCACTTAGTGTGTGATTTGAGATAGCTTCCACTATGTA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCTGCTATATA
* *
32756509 CGACACTTAGTGTGT
1 TGGCACTTAGTGTGT
32756524 AAGATATCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 80 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.36
Consensus pattern (40 bp):
TGGCACTTAGTGTGTGATTCGACATAGCTTCTGCTATATA
Found at i:32756556 original size:28 final size:28
Alignment explanation
Indices: 32756512--32756583 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
32756502 CTATGTACGA
* *
32756512 CACTTAGTGTGTAAGATATCAAGTGTGG
1 CACTTAGTGTGTGAGATATCAAGTATGG
* *
32756540 CACTTAGTGTGCGAGATATCGAGTATGG
1 CACTTAGTGTGTGAGATATCAAGTATGG
* *
32756568 AACTTAATGTGTGAGA
1 CACTTAGTGTGTGAGA
32756584 CATTGAGTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGTGAGATATCAAGTATGG
Found at i:32759051 original size:68 final size:66
Alignment explanation
Indices: 32758979--32759128 Score: 169
Period size: 67 Copynumber: 2.2 Consensus size: 66
32758969 CATCATGTGT
* * * *
32758979 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
32759042 TGTAG
62 TGTAG
** * *
32759047 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
32759112 AG
65 AG
32759114 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
32759129 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:32759084 original size:64 final size:64
Alignment explanation
Indices: 32759003--32759186 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
32758993 AGACATTATG
* * *
32759003 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
32759067 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
32759132 AA
63 AA
* * *
32759134 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
32759187 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32763506 original size:62 final size:63
Alignment explanation
Indices: 32763430--32763610 Score: 190
Period size: 62 Copynumber: 2.9 Consensus size: 63
32763420 AGACATTATG
* * *
32763430 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCT-GGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAGAGATAA
* * * * *
32763492 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTA-GAGATA
32763557 A
63 A
* * *
32763558 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
32763611 CGAACTATAT
Statistics
Matches: 97, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 25 0.26
63 21 0.22
64 24 0.25
65 19 0.20
66 6 0.06
67 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAGAGATAA
Found at i:32767577 original size:62 final size:62
Alignment explanation
Indices: 32767498--32767679 Score: 174
Period size: 67 Copynumber: 2.8 Consensus size: 62
32767488 AGACATTATG
* *
32767498 ATGTAGCTAGGTCGCATGGGTTACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * *
32767560 ATGTAGCTAGGTCGCATGCGTGGTT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCAT--G-GGTTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
32767624 TAA
60 TAA
* * *
32767627 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGT--TACTATGTGTACACCATGTAG-ACAAGAGAGC
32767680 CGAACTATAT
Statistics
Matches: 98, Mismatches: 11, Indels: 21
0.75 0.08 0.16
Matches are distributed among these distances:
62 18 0.18
63 22 0.22
64 5 0.05
65 5 0.05
66 15 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (62 bp):
ATGTAGCTAGGTCGCATGGGTTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32771192 original size:19 final size:18
Alignment explanation
Indices: 32771145--32771197 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
32771135 AAAAATGATT
32771145 TTTATTTCTATTTAATAA
1 TTTATTTCTATTTAATAA
*
32771163 TTTATCATCTA-TTAATAA
1 TTTAT-TTCTATTTAATAA
32771181 TATTGATTTCTAATTTA
1 T-TT-ATTTCT-ATTTA
32771198 GTCCTAAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 13 0.46
19 9 0.32
20 3 0.11
21 3 0.11
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTATTTCTATTTAATAA
Found at i:32776490 original size:44 final size:44
Alignment explanation
Indices: 32776425--32776508 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
32776415 TTGATATCTC
* *
32776425 AAAGTCCATGGTTGTACCATGGAAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACGGA
* * *
32776469 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGAAATTAAGGAAGAATTGA
32776509 AGGTTAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACGGA
Found at i:32776714 original size:47 final size:47
Alignment explanation
Indices: 32776663--32776821 Score: 142
Period size: 47 Copynumber: 3.2 Consensus size: 47
32776653 AAGGATACCA
32776663 GTAAGACCATGTTTGGAACATGACATTTGGTAAGATAATGATATCAT
1 GTAAGACCATGTTTGGAACATGACATTTGGTAAGATAATGATATCAT
*** * * * *
32776710 GTAAGACCATGCCAAGGCATGGCATTGATAAGTTCT-ATAAGAT-ATGGATACCAT
1 GTAAGACCATG-TTTGG-A--ACA-TGA-CA-TT-TGGTAAGATAAT-GATATCAT
* *
32776764 GTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCAT
1 GTAAGACCATGTTTGGAACATGACATTTGGTAAGATAATGATATCAT
32776811 GTAAGACCATG
1 GTAAGACCATG
32776822 CCAAGGCATG
Statistics
Matches: 85, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
46 1 0.01
47 37 0.44
48 4 0.05
49 3 0.04
50 2 0.02
51 2 0.02
52 4 0.05
53 5 0.06
54 26 0.31
55 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (47 bp):
GTAAGACCATGTTTGGAACATGACATTTGGTAAGATAATGATATCAT
Found at i:32776714 original size:94 final size:98
Alignment explanation
Indices: 32776614--32776876 Score: 291
Period size: 101 Copynumber: 2.7 Consensus size: 98
32776604 TAAGGACTCT
* ** *
32776614 ATGTAAGACCACATCAAGATGTGGCATTGA-CA-T-TAAGACAAGGATACCA-GTAAGACCATGT
1 ATGTAAGACCACACCAAGACATGGCATTGATAATTATAAGACAAGGATACCATGTAAGACCATGT
*
32776675 TTGGAACATGACATTTGGTAAGATAATGATATC
66 TTGGAACATGACATTTGGTAAGATAAGGATATC
** * * *
32776708 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGATATGGATACCATGTAAGACCA
1 ATGTAAGACCACACCAAGACATGGCATTGATAA--T-TATAAGACAAGGATACCATGTAAGACCA
*
32776773 TGTTTGGAACATGGCATTTGGTAAGATAAGGATATC
63 TGTTTGGAACATGACATTTGGTAAGATAAGGATATC
** * * * *
32776809 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCA
1 ATGTAAGACCACACCAAGACATGGCATTGATAA--T-TATAAGACAAGGATACCATGTAAGACCA
32776874 TGT
63 TGT
32776877 CAAGACATGG
Statistics
Matches: 146, Mismatches: 16, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
94 24 0.16
95 1 0.01
99 1 0.01
100 14 0.10
101 106 0.73
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.26
Consensus pattern (98 bp):
ATGTAAGACCACACCAAGACATGGCATTGATAATTATAAGACAAGGATACCATGTAAGACCATGT
TTGGAACATGACATTTGGTAAGATAAGGATATC
Found at i:32776783 original size:101 final size:101
Alignment explanation
Indices: 32776647--32777092 Score: 409
Period size: 108 Copynumber: 4.3 Consensus size: 101
32776637 GCATTGACAT
*
32776647 TAAGACAAGGATACCA-GTAAGACCATGTTTGGAACATGACATTTGGTAAGATAATGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
32776711 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * *
32776747 TAAGATATGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
32776812 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * * *** * ** *
32776848 TAAGGCAAGGAAATCATGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAA
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATT--TG-G-TAAGATAAGG-ATA
* *
32776912 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
61 --T--CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* * *** * ** *
32776956 TAAGGA-AAGGATACCATGAAAGAGCATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAA
1 TAA-GACAAGGATACCATGTAAGACCATGTTTGGAACATGACATT--TG-G-TAAGATAAGG-AT
* * *
32777019 AGGTCCCATGTAATACCATGCCAAGGCATGGCATTGGTGAGTTC-A
60 A--T--CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
* *
32777064 CAAGGCAAGGATACCATGTAAGACCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
32777093 CAAGACATGG
Statistics
Matches: 307, Mismatches: 27, Indels: 16
0.88 0.08 0.05
Matches are distributed among these distances:
100 24 0.08
101 107 0.35
102 2 0.01
103 1 0.00
104 8 0.03
105 2 0.01
107 2 0.01
108 124 0.40
109 37 0.12
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (101 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:32776929 original size:55 final size:55
Alignment explanation
Indices: 32776800--32777102 Score: 377
Period size: 55 Copynumber: 5.6 Consensus size: 55
32776790 TTGGTAAGAT
* * *
32776800 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * *
32776854 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * *
32776910 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG-A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * *
32776962 AAGGATACCATGAAAGAGCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * * * *
32777018 AAGG-TCCCATGTAATACCATGCCAAGGCATGGCATTGGTGAGTTC-ACAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
*
32777070 AAGGATACCATGTAAGACCATGTCAAGACATGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG
32777103 AAATGGTAAG
Statistics
Matches: 214, Mismatches: 28, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
52 9 0.04
53 70 0.33
54 44 0.21
55 82 0.38
56 9 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
Found at i:32777140 original size:108 final size:108
Alignment explanation
Indices: 32776808--32777102 Score: 500
Period size: 108 Copynumber: 2.7 Consensus size: 108
32776798 ATAAGGATAT
* * * *
32776808 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
32776873 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * *
32776917 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAAAGGATACCATGAAAGAGCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
32776982 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* *
32777025 CATGTAATACCATGCCAAGGCATGGCATTGGTGAGTTCACAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
32777090 TGTCAAGACATGG
66 TGTCAAGACATGG
32777103 AAATGGTAAG
Statistics
Matches: 174, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
108 138 0.79
109 36 0.21
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:32777218 original size:58 final size:58
Alignment explanation
Indices: 32777128--32777242 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
32777118 AAAGGAAAAC
*
32777128 GTTCCTGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAGAAG
1 GTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAGAAG
32777186 GTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAGAA
1 GTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAGAA
32777243 TGAGTATTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (58 bp):
GTTCCCGAGTAATCCAAAGAGTAACTCAAAGAAACGACAAGGTGAGAACATGAAGAAG
Found at i:32781431 original size:68 final size:64
Alignment explanation
Indices: 32781357--32781564 Score: 215
Period size: 67 Copynumber: 3.2 Consensus size: 64
32781347 CATCATGTGT
*
32781357 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
32781422 TAG
62 TAG
* * * * * *
32781425 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGT
32781490 AG
63 AG
* * * *
32781492 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG
32781554 TACAAGAGAGC
1 -ACAAGAGAGC
32781565 CGAACTATAT
Statistics
Matches: 118, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 25 0.21
65 3 0.03
66 22 0.19
67 33 0.28
68 15 0.13
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:32787319 original size:48 final size:48
Alignment explanation
Indices: 32787267--32787505 Score: 228
Period size: 48 Copynumber: 5.0 Consensus size: 48
32787257 ATGAATCCAT
* * *
32787267 ATATCATTACCGATATCATGTCCCAGACATGCTCTTACACTGGCACAC
1 ATATCATTACCGATACCATGTCCCAGACATGGTCTTACACAGGCACAC
* *
32787315 ATATCATTGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAC
1 ATATCATTACCGATACCATGTCCCAGACATGGTCTTACACAGGCACAC
* * **** * * *
32787363 ATTTTATCGTTGATGCCATGTCCCAAACATGGTCTTACACAGGCACAT
1 ATATCATTACCGATACCATGTCCCAGACATGGTCTTACACAGGCACAC
* * * * * * *
32787411 ATATCGTCACTGATACCATGCCCCAAACATGGTCTTACACAGGCATAT
1 ATATCATTACCGATACCATGTCCCAGACATGGTCTTACACAGGCACAC
* * * * *
32787459 ATATCATCT-CTGATGCCATGTCCTAGACATGGTCTTACGCAAGCACA
1 ATATCAT-TACCGATACCATGTCCCAGACATGGTCTTACACAGGCACA
32787506 TTTAGCACGG
Statistics
Matches: 161, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
48 161 1.00
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (48 bp):
ATATCATTACCGATACCATGTCCCAGACATGGTCTTACACAGGCACAC
Found at i:32787399 original size:96 final size:96
Alignment explanation
Indices: 32787283--32787505 Score: 268
Period size: 96 Copynumber: 2.3 Consensus size: 96
32787273 TTACCGATAT
* * ** * * *
32787283 CATGTCCCAGACATGCTCTTACACTGGCACACATATCATTGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATACCATGCCCCAAACATGGT
* *
32787348 CTTACACAGGCACACATTTTATCGT-TGATGC
66 CTTACACAGGCACACATATCATC-TCTGATGC
* * * *
32787379 CATGTCCCAAACATGGTCTTACACAGGCACATATATCGTCACTGATACCATGCCCCAAACATGGT
1 CATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATACCATGCCCCAAACATGGT
* *
32787444 CTTACACAGGCATATATATCATCTCTGATGC
66 CTTACACAGGCACACATATCATCTCTGATGC
* * *
32787475 CATGTCCTAGACATGGTCTTACGCAAGCACA
1 CATGTCCCAGACATGGTCTTACACAGGCACA
32787506 TTTAGCACGG
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
95 1 0.01
96 106 0.99
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (96 bp):
CATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATACCATGCCCCAAACATGGT
CTTACACAGGCACACATATCATCTCTGATGC
Found at i:32791925 original size:29 final size:29
Alignment explanation
Indices: 32791703--32791924 Score: 372
Period size: 29 Copynumber: 7.7 Consensus size: 29
32791693 GCTTGGAAGG
*
32791703 TATGGCACTAAGTGTGCGAACTTAATTTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32791732 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32791761 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32791790 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32791819 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32791848 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
32791877 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32791906 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
32791925 GATCGTTTAT
Statistics
Matches: 182, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 182 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:32799515 original size:29 final size:29
Alignment explanation
Indices: 32799351--32799514 Score: 274
Period size: 29 Copynumber: 5.7 Consensus size: 29
32799341 GCTTGGAAGG
32799351 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32799380 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32799409 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32799438 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
32799467 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32799496 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
32799515 GATCGTTTAT
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 127 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:32806099 original size:96 final size:96
Alignment explanation
Indices: 32805947--32806140 Score: 280
Period size: 96 Copynumber: 2.0 Consensus size: 96
32805937 TACATGAGTT
* * * *
32805947 CACATATCATTGTCGATGCCATGTCCCAGACATGATCTAACACTGGCACACATATCATCACCGAT
1 CACATATCATCGTCGATGCCATGTCCCACACATGATCTAACACAGGAACACATATCATCACCGAT
* * *
32806012 TCCATGTCCCAAACATGGTCTTACACTGGCA
66 GCCATATCCCAAACATGGTCTTACACAGGCA
* * **
32806043 CACATATCATCGTCGATGCCATGTCCCACACATGGTCTTACACAGGAACATTTATCATCACCGAT
1 CACATATCATCGTCGATGCCATGTCCCACACATGATCTAACACAGGAACACATATCATCACCGAT
*
32806108 GCCATATCCCAGACATGGTCTTACACAGGCA
66 GCCATATCCCAAACATGGTCTTACACAGGCA
32806139 CA
1 CA
32806141 TTTAGCACGG
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.24
Consensus pattern (96 bp):
CACATATCATCGTCGATGCCATGTCCCACACATGATCTAACACAGGAACACATATCATCACCGAT
GCCATATCCCAAACATGGTCTTACACAGGCA
Found at i:32806144 original size:48 final size:48
Alignment explanation
Indices: 32805914--32806140 Score: 249
Period size: 48 Copynumber: 4.7 Consensus size: 48
32805904 TAAAGTACGA
* * * ** ***
32805914 ATGCCATGTCCCCGACATAGTCTTACA-TGAGTTCACATATCATTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACAG-GCACACATATCATCACCG
* * *
32805962 ATGCCATGTCCCAGACATGATCTAACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
* * * **
32806010 ATTCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
* * **
32806058 ATGCCATGTCCCACACATGGTCTTACACAGGAACATTTATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
*
32806106 ATGCCATATCCCAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
32806141 TTTAGCACGG
Statistics
Matches: 152, Mismatches: 26, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
48 150 0.99
49 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCG
Found at i:32808533 original size:40 final size:40
Alignment explanation
Indices: 32808474--32808600 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
32808464 TGGAATACAA
* * *
32808474 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTCTTAGC
*
32808514 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
32808554 CCGGAT-GTAGCCG-CTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAG-A-ACGACTTGCACAAATGCCTTCGGGTCTTAGC
32808594 CCGGATA
1 CCGGATA
32808601 TAATTTCCAG
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 72 0.96
41 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATAGAACGACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:32808618 original size:40 final size:40
Alignment explanation
Indices: 32808474--32808641 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
32808464 TGGAATACAA
* ** *
32808474 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCGCCAGCACAATTGCCTTCGGGTCTTAGC
* **
32808514 CCGGATAGAA-CGACTTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCG-CCAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
32808554 CCGGATGTAGCCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCGCCAGCACAATTGCCTTCGGGTCTTAGC
*** * * * *
32808594 CCGGATATAATTTCCAGCATAATTGTCTTTGGGACTTAGC
1 CCGGATATAACCGCCAGCACAATTGCCTTCGGGTCTTAGC
32808634 CCGGATAT
1 CCGGATAT
32808642 CATTCAATTG
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 98 0.93
41 4 0.04
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCGCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:32818956 original size:38 final size:38
Alignment explanation
Indices: 32818914--32818991 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
32818904 GTAAATTCGT
32818914 ATAACCTGAAGTAAACTTTTATTATACTTAAATAATGC
1 ATAACCTGAAGTAAACTTTTATTATACTTAAATAATGC
32818952 ATAACCTGAAGTAAACTTTTATTATACTTAAATAATGC
1 ATAACCTGAAGTAAACTTTTATTATACTTAAATAATGC
32818990 AT
1 AT
32818992 GTTCTTGAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (38 bp):
ATAACCTGAAGTAAACTTTTATTATACTTAAATAATGC
Found at i:32822651 original size:29 final size:29
Alignment explanation
Indices: 32822617--32822746 Score: 119
Period size: 29 Copynumber: 4.6 Consensus size: 29
32822607 TAATCGATCA
*
32822617 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
32822646 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
32822675 CGCACACTTAGTG--ATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
32822702 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
32822731 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32822747 ATCTTGTCAC
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
25 3 0.04
26 3 0.04
27 15 0.18
29 62 0.73
31 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:32822706 original size:27 final size:28
Alignment explanation
Indices: 32822676--32822744 Score: 122
Period size: 29 Copynumber: 2.5 Consensus size: 28
32822666 ATTTAAATTC
32822676 GCACACTTAGTG-ATACTTTTCAAGCTT
1 GCACACTTAGTGCATACTTTTCAAGCTT
32822703 GCACACTTAGTGCCATACTTTTCAAGCTT
1 GCACACTTAGTG-CATACTTTTCAAGCTT
32822732 GCACACTTAGTGC
1 GCACACTTAGTGC
32822745 CAATCTTGTC
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 12 0.30
28 1 0.03
29 27 0.68
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (28 bp):
GCACACTTAGTGCATACTTTTCAAGCTT
Found at i:32840980 original size:27 final size:27
Alignment explanation
Indices: 32840944--32841038 Score: 75
Period size: 27 Copynumber: 3.4 Consensus size: 27
32840934 GGTTGAAGAA
32840944 CTCGCACACAGTGCCTCAATTACCGAT
1 CTCGCACACAGTGCCTCAATTACCGAT
** **
32840971 CTCGCACACATAGTG-CTCGGTTAAAGGAATT
1 CTCGCACAC--AGTGCCTCAATT-ACCG-A-T
* * *
32841002 CACACACACAGTGCCTCAATTACTGAT
1 CTCGCACACAGTGCCTCAATTACCGAT
32841029 CTCGCACACA
1 CTCGCACACA
32841039 TAGTGCTCGG
Statistics
Matches: 50, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
27 18 0.36
28 6 0.12
29 12 0.24
30 6 0.12
31 8 0.16
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (27 bp):
CTCGCACACAGTGCCTCAATTACCGAT
Found at i:32841034 original size:58 final size:58
Alignment explanation
Indices: 32840888--32841076 Score: 260
Period size: 58 Copynumber: 3.3 Consensus size: 58
32840878 TGAATCTCAT
** * * *
32840888 TTCACACACTTAGTGCC-CACTGACCGATCTCGCACACATAGTGCTCGGTTGAA-GAA
1 TTCACACACACAGTGCCTCAATTACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA
* *
32840944 --CTCGCACACAGTGCCTCAATTACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA
1 TTCACACACACAGTGCCTCAATTACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA
*
32841000 TTCACACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCTCGGTTAAAGGAA
1 TTCACACACACAGTGCCTCAATTACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA
**
32841058 TTTGCACACACAGTGCCTC
1 TTCACACACACAGTGCCTC
32841077 TAATCATTCG
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
54 11 0.09
55 33 0.28
56 3 0.03
58 70 0.60
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (58 bp):
TTCACACACACAGTGCCTCAATTACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA
Found at i:32841072 original size:29 final size:29
Alignment explanation
Indices: 32840972--32841073 Score: 100
Period size: 29 Copynumber: 3.5 Consensus size: 29
32840962 ATTACCGATC
*
32840972 TCGCACACATAGTGCTCGGTTAAAGGAAT
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
* ** **
32841001 TCACACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
32841029 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
32841059 TTGCACACACAGTGC
1 TCGCACACACAGTGC
32841074 CTCTAATCAT
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
28 7 0.13
29 41 0.75
30 7 0.13
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:32841337 original size:42 final size:43
Alignment explanation
Indices: 32841239--32841561 Score: 471
Period size: 42 Copynumber: 7.9 Consensus size: 43
32841229 AATCACCATT
*
32841239 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGG--CG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
* *
32841280 AAGCCTGCTAGGCACGAAGGCCCGAATACATA-CACCAGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
32841322 AAGCCTGCTAGGCACGAAGG-CC-AAT--ACATCAACGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
32841361 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCAC-
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
32841403 AAGCCTGCTAGGCACGAAGGCCTGAATACACAT----GGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
32841442 -AGCCTGCTAGGCACGAA-G-CCGAATACACATCA-CGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
32841481 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
32841524 AAGCCTGCTAGGCACGAAGGCCCCAATACACATCACCG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCG
32841562 AGTTTCATGC
Statistics
Matches: 257, Mismatches: 10, Indels: 28
0.87 0.03 0.09
Matches are distributed among these distances:
36 11 0.04
37 1 0.00
38 24 0.09
39 34 0.13
40 27 0.11
41 36 0.14
42 68 0.26
43 56 0.22
ACGTcount: A:0.32, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
Found at i:32841338 original size:16 final size:16
Alignment explanation
Indices: 32841317--32841379 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 16
32841307 ACATACACCA
32841317 GCACGAAGCCTGCTAG
1 GCACGAAGCCTGCTAG
*
32841333 GCACGAAGGCCAATACATCAACG
1 GCACGAA-GCC--TGC-T--A-G
32841356 GCACGAAGCCTGCTAG
1 GCACGAAGCCTGCTAG
32841372 GCACGAAG
1 GCACGAAG
32841380 GCCCGAATAC
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
16 16 0.42
17 4 0.11
19 3 0.08
20 3 0.08
22 4 0.11
23 8 0.21
ACGTcount: A:0.32, C:0.30, G:0.29, T:0.10
Consensus pattern (16 bp):
GCACGAAGCCTGCTAG
Found at i:32841376 original size:81 final size:83
Alignment explanation
Indices: 32841239--32841559 Score: 432
Period size: 81 Copynumber: 3.9 Consensus size: 83
32841229 AATCACCATT
* *
32841239 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGG--CGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAG-GCCGAATA-ACATCAACGGCACGAAGCCTGCTAGGCACGAAGGCC
* *
32841302 CGAATACATA-CACCAGCACG
64 CGAATACACATCA-CGGCACG
32841322 AAGCCTGCTAGGCACGAAGGCC-AAT-ACATCAACGGCACGAAGCCTGCTAGGCACGAAGGCCCG
1 AAGCCTGCTAGGCACGAAGGCCGAATAACATCAACGGCACGAAGCCTGCTAGGCACGAAGGCCCG
32841385 AATACACATCATCGGCAC-
66 AATACACATCA-CGGCACG
*
32841403 AAGCCTGCTAGGCACGAAGGCCTGAAT-ACA-C-ATGGCACG-AGCCTGCTAGGCACGAA-G-CC
1 AAGCCTGCTAGGCACGAAGGCC-GAATAACATCAACGGCACGAAGCCTGCTAGGCACGAAGGCCC
32841462 GAATACACATCACGGCACG
65 GAATACACATCACGGCACG
*
32841481 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGG-CCGAATA-ACATCAACGGCACGAAGCCTGCTAGGCACGAAGGCC
*
32841546 CCAATACACATCAC
64 CGAATACACATCAC
32841560 CGAGTTTCAT
Statistics
Matches: 215, Mismatches: 9, Indels: 26
0.86 0.04 0.10
Matches are distributed among these distances:
77 6 0.03
78 38 0.18
79 12 0.06
80 20 0.09
81 66 0.31
82 16 0.07
83 42 0.20
84 1 0.00
85 14 0.07
ACGTcount: A:0.32, C:0.33, G:0.25, T:0.11
Consensus pattern (83 bp):
AAGCCTGCTAGGCACGAAGGCCGAATAACATCAACGGCACGAAGCCTGCTAGGCACGAAGGCCCG
AATACACATCACGGCACG
Found at i:32843623 original size:40 final size:40
Alignment explanation
Indices: 32843564--32843670 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
32843554 CAATTGAATG
* * * *
32843564 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
32843604 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
32843644 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
32843671 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:32843730 original size:40 final size:40
Alignment explanation
Indices: 32843606--32843731 Score: 150
Period size: 40 Copynumber: 3.1 Consensus size: 40
32843596 TGGAAATTAT
* **
32843606 ATCCGGGTTAAGACCCGAAGGCAATT-GTGC-TAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGGTTAC
* *
32843646 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT-C
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAC
*
32843685 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTAC
1 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAC
32843726 ATCCGG
1 ATCCGG
32843732 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
39 4 0.05
40 69 0.93
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAC
Found at i:32852866 original size:40 final size:40
Alignment explanation
Indices: 32852637--32852862 Score: 330
Period size: 40 Copynumber: 5.7 Consensus size: 40
32852627 GCCACTCACT
**
32852637 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32852677 CAAATGTCTTCGGGACTTAACCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
32852717 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
32852757 CAAATGCCTTCGGGACTTAGCCTGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
32852797 CAAATACCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
32852837 CAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32852863 ATTATCATCC
Statistics
Matches: 173, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.01
40 172 0.99
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32855015 original size:40 final size:40
Alignment explanation
Indices: 32854910--32855246 Score: 520
Period size: 40 Copynumber: 8.5 Consensus size: 40
32854900 CGGATGATAA
* *
32854910 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
32854950 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32854989 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32855029 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32855069 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32855109 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
32855149 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32855189 CCGGGCTAAGTCTCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
32855229 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
32855247 TACTTGGTTT
Statistics
Matches: 276, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 50 0.18
40 226 0.82
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32862753 original size:12 final size:13
Alignment explanation
Indices: 32862736--32862773 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
32862726 ATCCTGGAAT
32862736 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
32862748 ATTAAGAACACATA
1 ATTAAGAACA-AGA
32862762 ATTAAGAACAAG
1 ATTAAGAACAAG
32862774 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:32869101 original size:12 final size:13
Alignment explanation
Indices: 32869065--32869102 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
32869055 AAATATTTGA
32869065 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
32869078 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
32869092 CTTG-TCTTAAT
1 CTTGTTCTTAAT
32869103 ATTCTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:32874702 original size:35 final size:36
Alignment explanation
Indices: 32874652--32874735 Score: 107
Period size: 35 Copynumber: 2.3 Consensus size: 36
32874642 TACCTAGAAA
* * *
32874652 AATATAACATCCATAAGGATTGAACCATAATT-CAC
1 AATATAACTTACATAAGGATTGAAACATAATTACAC
*
32874687 AATATAACTTACATAAGGATTTAAACATAATTACAC
1 AATATAACTTACATAAGGATTGAAACATAATTACAC
*
32874723 CATATGAACTTAC
1 AATAT-AACTTAC
32874736 CTAGCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
35 28 0.67
36 7 0.17
37 7 0.17
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (36 bp):
AATATAACTTACATAAGGATTGAAACATAATTACAC
Found at i:32880682 original size:29 final size:29
Alignment explanation
Indices: 32880489--32880681 Score: 305
Period size: 29 Copynumber: 6.7 Consensus size: 29
32880479 GCTTGGAAGG
*
32880489 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32880518 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32880547 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32880576 TATGGCACTAGGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32880605 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
32880634 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32880663 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
32880682 GATCGTTTAT
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 153 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:32883643 original size:17 final size:17
Alignment explanation
Indices: 32883623--32883675 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
32883613 GTCACACGCT
32883623 CATGTGTGACACATGCC
1 CATGTGTGACACATGCC
*
32883640 CATGTGTG----TTGCC
1 CATGTGTGACACATGCC
*
32883653 CGTGTGTGACACATGCC
1 CATGTGTGACACATGCC
32883670 CATGTG
1 CATGTG
32883676 GCCAAGCCGT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 11 0.39
17 17 0.61
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.28
Consensus pattern (17 bp):
CATGTGTGACACATGCC
Found at i:32884480 original size:16 final size:17
Alignment explanation
Indices: 32884460--32884503 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
32884450 CATCTCATAA
32884460 TCATTTCTCATATTTTC
1 TCATTTCTCATATTTTC
*
32884477 -CATTTC-AATATTTTC
1 TCATTTCTCATATTTTC
32884492 TCA--TCTCATATT
1 TCATTTCTCATATT
32884504 CATTATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 2 0.09
15 13 0.57
16 8 0.35
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (17 bp):
TCATTTCTCATATTTTC
Found at i:32885200 original size:18 final size:18
Alignment explanation
Indices: 32885161--32885200 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32885151 AATACTATAC
*
32885161 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
* *
32885179 ATTTCAGTTTCACACTAT
1 ATTTCAATTTCACACTAA
32885197 ATTT
1 ATTT
32885201 TGCTTATTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:32885754 original size:17 final size:17
Alignment explanation
Indices: 32885732--32885767 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
32885722 ATTAAAGTTA
32885732 ATATATATAACATATAT
1 ATATATATAACATATAT
32885749 ATATATATAACATATAT
1 ATATATATAACATATAT
32885766 AT
1 AT
32885768 TTATTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (17 bp):
ATATATATAACATATAT
Found at i:32898451 original size:29 final size:29
Alignment explanation
Indices: 32898289--32898450 Score: 270
Period size: 29 Copynumber: 5.6 Consensus size: 29
32898279 GTGACAAGAT
32898289 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
32898318 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
32898347 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
*
32898376 TGGCACTAAGTGTGCAAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
* * ***
32898405 TGGCACTATGTGTGCGAGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
32898434 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
32898451 GATCGTTTAT
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 125 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:32906572 original size:29 final size:29
Alignment explanation
Indices: 32906408--32906571 Score: 256
Period size: 29 Copynumber: 5.7 Consensus size: 29
32906398 GCTTGGAAGG
*
32906408 TATGGCACTAAGTGTACGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32906437 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32906466 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
**
32906495 TATGGCACTAAGTGTGAAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
32906524 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32906553 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
32906572 GATCGTTTAT
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 124 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:32911135 original size:43 final size:43
Alignment explanation
Indices: 32911063--32911185 Score: 176
Period size: 43 Copynumber: 2.9 Consensus size: 43
32911053 TTTTATCAAA
** * *
32911063 TCACCGGCATT-TCTCCTGCTAGGCTTGAAGCCCGATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCATC
* *
32911105 TCATCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCATC
*
32911148 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
32911186 ATATTATTCA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 10 0.14
43 62 0.86
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCATC
Found at i:32911225 original size:43 final size:46
Alignment explanation
Indices: 32911111--32911226 Score: 136
Period size: 43 Copynumber: 2.7 Consensus size: 46
32911101 CATTTCATCG
* * *
32911111 GCATTATAGCCTGCTAGGCCTGAAGCCCG---ATATTATCTCACCG
1 GCATTAAAGCCTGCTAGGCCCGAAGCCCGATAATATTATCTCACCA
*
32911154 GCATTATAGCCTGCTAGGCCCGAAGCCCGATAATATTAT-TCACCA
1 GCATTAAAGCCTGCTAGGCCCGAAGCCCGATAATATTATCTCACCA
* *
32911199 GC-TTAAAGCTTGCTAGG-CCGAGGCCCGA
1 GCATTAAAGCCTGCTAGGCCCGAAGCCCGA
32911227 ATATCACATT
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
43 38 0.58
44 13 0.20
45 7 0.11
46 7 0.11
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (46 bp):
GCATTAAAGCCTGCTAGGCCCGAAGCCCGATAATATTATCTCACCA
Found at i:32911225 original size:86 final size:85
Alignment explanation
Indices: 32911063--32911226 Score: 190
Period size: 86 Copynumber: 1.9 Consensus size: 85
32911053 TTTTATCAAA
** ** * * *
32911063 TCACCGGCATTTCTCCTGCTAGGCTTGAAGCCCGATATCATTTCATCGGCATTATAGCCTGCTAG
1 TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCAGCATTAAAGCCTGCTAG
32911128 GCCTGAAGCCCGATATTATC
66 GCCTGAAGCCCGATATTATC
*
32911148 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-ATTATTCACCAGC-TTAAAGCTTG
1 TCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGAT-ATCA-T-TTCACCAGCATTAAAGCCTG
*
32911211 CTAGGCC-GAGGCCCGA
62 CTAGGCCTGAAGCCCGA
32911227 ATATCACATT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
85 11 0.17
86 30 0.45
87 18 0.27
88 7 0.11
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (85 bp):
TCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCATTTCACCAGCATTAAAGCCTGCTAG
GCCTGAAGCCCGATATTATC
Found at i:32914392 original size:47 final size:46
Alignment explanation
Indices: 32914292--32914398 Score: 114
Period size: 47 Copynumber: 2.3 Consensus size: 46
32914282 TCGAGACGTA
* *
32914292 AGCCAGTGTAAGA-CATGTCTGGGACATGCGTTGGCTACTAGATGAT
1 AGCCAGTGTAAGACCATGTCTGAGACATGCGTTGACTAC-AGATGAT
*
32914338 AGGCAGTGTAAGACCATGTCTGAGACATG-GCTTCGACTTA-AGAT-AT
1 AGCCAGTGTAAGACCATGTCTGAGACATGCG-TT-GAC-TACAGATGAT
32914384 GAGCCAGTGTAAGAC
1 -AGCCAGTGTAAGAC
32914399 TGTGTCTAGG
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
46 15 0.29
47 33 0.63
48 2 0.04
49 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGAGACATGCGTTGACTACAGATGAT
Found at i:32916767 original size:46 final size:43
Alignment explanation
Indices: 32916624--32916759 Score: 123
Period size: 46 Copynumber: 3.0 Consensus size: 43
32916614 CCCGCCCCTA
*
32916624 AGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
32916671 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
32916717 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
32916760 CCTAGTGACA
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 29 0.39
47 29 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:32917202 original size:30 final size:30
Alignment explanation
Indices: 32917168--32917227 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32917158 ATTTAATACG
32917168 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
32917198 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
32917228 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:32924966 original size:29 final size:29
Alignment explanation
Indices: 32924831--32924965 Score: 207
Period size: 29 Copynumber: 4.7 Consensus size: 29
32924821 GCTTGGAAGG
*
32924831 TATGGCACTAACTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
32924860 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32924889 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
32924918 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
32924947 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
32924966 GATCGTTTAT
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:32933040 original size:29 final size:29
Alignment explanation
Indices: 32932878--32933039 Score: 209
Period size: 29 Copynumber: 5.6 Consensus size: 29
32932868 GTGACAAGAT
** **
32932878 TGGCACTAAGTGTGCGGGCTTGAAA-GGTA
1 TGGCACTAAGTGTGCGAACTT-AAATTATA
32932907 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
32932936 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
* *
32932965 TGGCACTAACTGTGCAAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
* * ***
32932994 TGGCACTATGTGTGCGAGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
32933023 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
32933040 GATCGTTTAT
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
28 3 0.03
29 115 0.97
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:32934942 original size:93 final size:93
Alignment explanation
Indices: 32934831--32935001 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
32934821 GCCCCTAAGT
* * * * *
32934831 GAACTCGGACTCAGCTCAACGAGCTCGGGCGTTCGCGTCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
32934896 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
32934924 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTGAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
32934989 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32935002 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:32934998 original size:46 final size:46
Alignment explanation
Indices: 32934830--32934998 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
32934820 CGCCCCTAAG
* * * * * *
32934830 TGAACTCGGACTCAGCTCAACGAGCTCGGGCGTTCGCGTCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* * **
32934876 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACATTTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA-TAAA
*
32934923 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
*
32934969 TGAACTCGGACTCAACTGAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
32934999 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 60 0.60
47 32 0.32
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:32935456 original size:30 final size:30
Alignment explanation
Indices: 32935422--32935478 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
32935412 ATTTAATACG
32935422 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
32935452 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
32935479 TTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:32936920 original size:631 final size:631
Alignment explanation
Indices: 32935717--32936978 Score: 2418
Period size: 631 Copynumber: 2.0 Consensus size: 631
32935707 TTTCACCTAT
* *
32935717 GGGTATTTTTCCAAATATAAACCCTAGGTTGAATTTTTGCTAACATAAGCTTTAGCGAGCTACCG
1 GGGTATTTTTCCAAATATAAACCCTAGGTTGAATTATTGCTAACATAAGCTTAAGCGAGCTACCG
32935782 AGATTCCAAAAACGTAAAGAACATTAAAAACGGGGCTTGGAATCACTTACTATGGAGCTTGGAAG
66 AGATTCCAAAAACGTAAAGAACATTAAAAACGGGGCTTGGAATCACTTACTATGGAGCTTGGAAG
*
32935847 CTTGAAACAAACCCTAACTATGGAGAACCCTTGAAATTTCGGCCTAATGAAGAATATGGACAAAA
131 CTTGAAACAAACCCTAACTATGGAGAACCCTTGAAATTTCGGCCTAATGAAGAAGATGGACAAAA
32935912 ATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACTACTA
196 ATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACTACTA
*
32935977 AACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCCATAGACTTAGAAATTGGTCAAATTTCT
261 AACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCCATAGACTTAGAAATTGGTCAAATTGCT
32936042 ATTTAAGACCTCCTAATTAATATTTCAATGCAATTTCATACTAAAAACTTCTAGAATGCAAATTT
326 ATTTAAGACCTCCTAATTAATATTTCAATGCAATTTCATACTAAAAACTTCTAGAATGCAAATTT
32936107 TGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCACGA
391 TGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCACGA
32936172 AATTTTCACAGAATCATGCAATCATATCATATTCATCAAAATAATTATAAAATAATTATTTCTAT
456 AATTTTCACAGAATCATGCAATCATATCATATTCATCAAAATAATTATAAAATAATTATTTCTAT
32936237 CTCGCATTTGTGGTCACGAAACCACTATTTCGATTAAGCCCTAATTCAGGATATTACAGTGACCC
521 CTCGCATTTGTGGTCACGAAACCACTATTTCGATTAAGCCCTAATTCAGGATATTACAGTGACCC
* * *
32936302 TTAAGAAATGCTAACGTCAGAAGCAGAATGTTCAGGTTTTTACACA
586 TTAAGAAATGCTAACGTCAGAAACAGAATATTCAAGTTTTTACACA
*
32936348 GGGTATTTTTCCAAATATAAACCCTAGGTTGAATTATTGCTAACATAAGCTTAATCGAGCTACCG
1 GGGTATTTTTCCAAATATAAACCCTAGGTTGAATTATTGCTAACATAAGCTTAAGCGAGCTACCG
*
32936413 AGATTCCAAAAACGTAAAGAACATTAAAAACGGGGCTTGGAATCACTTACTGTGGAGCTTGGAAG
66 AGATTCCAAAAACGTAAAGAACATTAAAAACGGGGCTTGGAATCACTTACTATGGAGCTTGGAAG
32936478 CTTGAAACAAACCCTAACTATGGAGAACCCTTGAAATTTCGGCCTAATGAAGAAGATGGACAAAA
131 CTTGAAACAAACCCTAACTATGGAGAACCCTTGAAATTTCGGCCTAATGAAGAAGATGGACAAAA
32936543 ATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACTACTA
196 ATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACTACTA
32936608 AACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCCATAGACTTAGAAATTGGTCAAATTGCT
261 AACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCCATAGACTTAGAAATTGGTCAAATTGCT
32936673 ATTTAAGACCTCCTAATTAATATTTCAATGCAATTTCATACTAAAAACTTCTAGAATGCAAATTT
326 ATTTAAGACCTCCTAATTAATATTTCAATGCAATTTCATACTAAAAACTTCTAGAATGCAAATTT
32936738 TGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCACGA
391 TGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCACGA
32936803 AATTTTCACAGAATCATGCAATCATATCATATTCATCAAAATAATTATAAAATAATTATTTCTAT
456 AATTTTCACAGAATCATGCAATCATATCATATTCATCAAAATAATTATAAAATAATTATTTCTAT
32936868 CTCGCATTTGTGGTCACGAAACCACTA-TTCTGATTAAGCCCTAATTCAGGATATTACAGTGACC
521 CTCGCATTTGTGGTCACGAAACCACTATTTC-GATTAAGCCCTAATTCAGGATATTACAGTGACC
*
32936932 CTTAAGAAATGCTAACGTCAGAAATAGAATATTCAAGTTTTTACACA
585 CTTAAGAAATGCTAACGTCAGAAACAGAATATTCAAGTTTTTACACA
32936979 CGGGCGTGTC
Statistics
Matches: 620, Mismatches: 10, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
630 3 0.00
631 617 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (631 bp):
GGGTATTTTTCCAAATATAAACCCTAGGTTGAATTATTGCTAACATAAGCTTAAGCGAGCTACCG
AGATTCCAAAAACGTAAAGAACATTAAAAACGGGGCTTGGAATCACTTACTATGGAGCTTGGAAG
CTTGAAACAAACCCTAACTATGGAGAACCCTTGAAATTTCGGCCTAATGAAGAAGATGGACAAAA
ATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATAACTAAATGACCAAAATGCCCTTACTACTA
AACTTTCCAAAAATTCCATCCATGTCCAATTTTTGTCCATAGACTTAGAAATTGGTCAAATTGCT
ATTTAAGACCTCCTAATTAATATTTCAATGCAATTTCATACTAAAAACTTCTAGAATGCAAATTT
TGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAACACTTTAGGCATAGAATTTCATCACGA
AATTTTCACAGAATCATGCAATCATATCATATTCATCAAAATAATTATAAAATAATTATTTCTAT
CTCGCATTTGTGGTCACGAAACCACTATTTCGATTAAGCCCTAATTCAGGATATTACAGTGACCC
TTAAGAAATGCTAACGTCAGAAACAGAATATTCAAGTTTTTACACA
Found at i:32939273 original size:13 final size:13
Alignment explanation
Indices: 32939255--32939281 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32939245 TTTGGTTACT
32939255 GAAAATATATGAG
1 GAAAATATATGAG
32939268 GAAAATATATGAG
1 GAAAATATATGAG
32939281 G
1 G
32939282 CTTATCTCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.22
Consensus pattern (13 bp):
GAAAATATATGAG
Found at i:32943073 original size:29 final size:29
Alignment explanation
Indices: 32943035--32943090 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
32943025 ACATCGATTT
*
32943035 TCAAGCCTAGGGATAAAATGGTCATTTTG
1 TCAAGCCTAGGGACAAAATGGTCATTTTG
* * *
32943064 TCAAGGCTAGGGGCAAAATGGTTATTT
1 TCAAGCCTAGGGACAAAATGGTCATTT
32943091 AACCAAAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (29 bp):
TCAAGCCTAGGGACAAAATGGTCATTTTG
Found at i:32952538 original size:95 final size:95
Alignment explanation
Indices: 32952370--32952545 Score: 241
Period size: 95 Copynumber: 1.9 Consensus size: 95
32952360 ATGGATGTGT
**
32952370 GCTAGTGTAAGACATGTCTGGGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGACCAGAT
1 GCTAGTGTAAGACATGTCTGGGGACATGCATCAACCACAATATGAGAGCCAGTGTAAGACCAGAT
32952435 CTGGGACATGGCATCGGTATTAAAGCGAGA
66 CTGGGACATGGCATCGGTATTAAAGCGAGA
* ** * *
32952465 GCTATTGTAAGACATGTCT-GGGACATGCATCAACTTCGAGATATGCA-AGCTAGTGTAAGACCT
1 GCTAGTGTAAGACATGTCTGGGGACATGCATCAACCAC-A-ATATG-AGAGCCAGTGTAAGACCA
32952528 G-TCTGGGACATGGCATCG
63 GATCTGGGACATGGCATCG
32952546 ACACCGATAG
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
94 14 0.20
95 36 0.51
96 20 0.28
97 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGGACATGCATCAACCACAATATGAGAGCCAGTGTAAGACCAGAT
CTGGGACATGGCATCGGTATTAAAGCGAGA
Found at i:32952573 original size:49 final size:48
Alignment explanation
Indices: 32952373--32952689 Score: 206
Period size: 49 Copynumber: 6.6 Consensus size: 48
32952363 GATGTGTGCT
* *
32952373 AGTGTAAGACATGTCTGGGGACAT-GCATCGGCCAC-A-ATATGAGAGCC
1 AGTGTAAGACCTGTCT-GGGACATGGCATCGACC-CGATATATGAGAGCC
* * * *
32952420 AGTGTAAGACCAGATCTGGGACATGGCATCG----GTATTAAAGCGAGAGCT
1 AGTGTAAGACCTG-TCTGGGACATGGCATCGACCCG-A-TATA-TGAGAGCC
* * * * * *
32952468 ATTGTAAGACATGTCTGGGACAT-GCATCAACTTCGAGATATGCA-AGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATATATG-AGAGCC
*
32952516 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATATATGAGAGCC
* * **
32952565 AGTGTAAGACCTGTCTAGGACATGGCATC-AGCCTCGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CC-CGATATATGAGAGCC
* * * * ** * *
32952614 AATGTATGACCTGTTTGGGATATGGCATCGA-CTTAGATATGTGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATATATGAGAGCC
* *
32952661 AGTGTAAGACCATGTTTGGAACATGGCAT
1 AGTGTAAGACC-TGTCTGGGACATGGCAT
32952690 TGGCATCATA
Statistics
Matches: 210, Mismatches: 41, Indels: 37
0.73 0.14 0.13
Matches are distributed among these distances:
45 1 0.00
46 5 0.02
47 47 0.22
48 70 0.33
49 84 0.40
50 2 0.01
51 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATATATGAGAGCC
Found at i:32952639 original size:98 final size:96
Alignment explanation
Indices: 32952461--32952689 Score: 246
Period size: 98 Copynumber: 2.4 Consensus size: 96
32952451 GTATTAAAGC
* * * * * * *
32952461 GAGAGCTATTGTAAGACATGTCTGGGACAT-GCATCAACTTCGAGATATGCAAGCTAGTGTAAGA
1 GAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGAGATATGAAAGCTAATGTAAGA
*
32952525 CCTGTCTGGGACATGGCATCGACACCGATAGAT
66 CCTGTCTGGGACATGGCATCGACACAGAT--AT
* * * *
32952558 GAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAGCCTCGATATATGAAAGTTAATGTATGA
1 GAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGAGATATGAAAGCTAATGTAAGA
* * **
32952623 CCTGTTTGGGATATGGCATCGACTTAGATAT
66 CCTGTCTGGGACATGGCATCGACACAGATAT
* *
32952654 GTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCAT
1 GAGAGCCAGTGTAAGACC-TGTCTAGG-ACATGGCAT
32952690 TGGCATCATA
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
96 22 0.20
97 38 0.34
98 51 0.46
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (96 bp):
GAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGAGATATGAAAGCTAATGTAAGA
CCTGTCTGGGACATGGCATCGACACAGATAT
Found at i:32957531 original size:40 final size:39
Alignment explanation
Indices: 32957487--32957615 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
32957477 GACTCGCTCA
*
32957487 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
32957526 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
32957566 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
32957604 GAATGCCTTCGG
1 -AATGCCTTCGG
32957616 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:32957615 original size:78 final size:80
Alignment explanation
Indices: 32957522--32957668 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
32957512 ATAGCGACTT
* * *
32957522 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
32957584 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
32957600 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
32957665 CGGA
66 CGGA
32957669 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:32957652 original size:40 final size:37
Alignment explanation
Indices: 32957503--32957668 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
32957493 TTCGGGACGA
* ** *
32957503 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
32957543 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
32957581 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
32957621 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
32957661 AGCCCGGA
1 AGCCCGGA
32957669 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:32965606 original size:40 final size:39
Alignment explanation
Indices: 32965562--32965690 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
32965552 GACTCGCTCA
*
32965562 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
32965601 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
32965641 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
32965679 GAATGCCTTCGG
1 -AATGCCTTCGG
32965691 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:32965690 original size:78 final size:80
Alignment explanation
Indices: 32965597--32965743 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
32965587 ATAGCGACTT
* * *
32965597 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
32965659 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
32965675 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
32965740 CGGA
66 CGGA
32965744 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:32965727 original size:40 final size:37
Alignment explanation
Indices: 32965578--32965743 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
32965568 TTCGGGACGA
* ** *
32965578 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
32965618 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
32965656 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
32965696 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
32965736 AGCCCGGA
1 AGCCCGGA
32965744 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:32979337 original size:48 final size:47
Alignment explanation
Indices: 32979278--32980469 Score: 1801
Period size: 48 Copynumber: 24.8 Consensus size: 47
32979268 ATATATGTGT
32979278 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATA
*
32979325 TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 -GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* *
32979374 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
*
32979422 GATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* * *
32979470 GATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* *
32979518 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
32979566 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* *
32979614 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* * *
32979662 GATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* *
32979710 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
32979758 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* *
32979806 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* * *
32979854 GATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
32979902 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* *
32979950 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* *
32979998 GATATGTAGATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
*
32980046 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATACGTGT-
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA--TATA
32980094 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATAT-A
* *
32980144 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* * *
32980192 GATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
32980240 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* *
32980288 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
32980336 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
* * *
32980384 GATATGTATATGTTGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-A
*
32980432 GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32980470 TGTTGTAACA
Statistics
Matches: 1062, Mismatches: 75, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
48 1014 0.95
49 5 0.00
50 43 0.04
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (47 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATA
Found at i:32979432 original size:96 final size:96
Alignment explanation
Indices: 32979268--32980469 Score: 1983
Period size: 96 Copynumber: 12.5 Consensus size: 96
32979258 AGATAAATAT
* *
32979268 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-ATGATATG
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA-GATATG
32979332 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
65 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
32979364 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
32979429 ATATGTGGTAAAGTCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
32979460 ATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
32979525 ATATGTGGTAAAGCCGAATGGCGAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
32979556 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
32979621 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * * *
32979652 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
32979717 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
32979748 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
32979813 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * * *
32979844 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
32979909 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32979940 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
32980005 AGATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* ** *
32980036 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATACGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
32980101 ATATGTGGTAAAGCCGAATGGCTAATGTGAAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTG-AA
* * *
32980133 TATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 -ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
32980198 TAGATGTGGTAAAGCCGAATGGCGAATGTGAA
65 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
32980230 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
32980295 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32980326 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* *
32980391 ATATGTTGTAAAGCCGAATGGCGAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32980422 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32980470 TGTTGTAACA
Statistics
Matches: 1043, Mismatches: 60, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
96 950 0.91
97 4 0.00
98 89 0.09
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:32979449 original size:144 final size:144
Alignment explanation
Indices: 32979268--32980469 Score: 1983
Period size: 144 Copynumber: 8.3 Consensus size: 144
32979258 AGATAAATAT
*
32979268 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT-ATGATATG
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA-GATATG
*
32979332 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
65 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
32979397 AATGGCTAATGTGAA
130 AATGGCTAATGTGAA
* *
32979412 ATATATGTGTGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* * *
32979477 ATATATGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
*
32979542 ATGGCGAATGTGAA
131 ATGGCTAATGTGAA
* *
32979556 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* * *
32979621 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTAGATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
*
32979686 ATGGCGAATGTGAA
131 ATGGCTAATGTGAA
* * * *
32979700 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
32979765 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
32979830 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
* * * *
32979844 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
32979909 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
32979974 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
* * *
32979988 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
** *
32980053 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATACGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
32980118 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
* * *
32980132 ATATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 ATATATATGT--GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAT
* * *
32980197 GTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
64 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
32980262 GAATGGCTAATGTGAA
129 GAATGGCTAATGTGAA
* * *
32980278 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
32980343 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTTGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
*
32980408 ATGGCGAATGTGAA
131 ATGGCTAATGTGAA
* * *
32980422 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32980470 TGTTGTAACA
Statistics
Matches: 1002, Mismatches: 53, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
144 869 0.87
145 1 0.00
146 132 0.13
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (144 bp):
ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAA
Found at i:32980553 original size:37 final size:37
Alignment explanation
Indices: 32980503--32980599 Score: 185
Period size: 37 Copynumber: 2.6 Consensus size: 37
32980493 ACATGAAACT
*
32980503 TGGAGATTATGTCCGGGTAAGACCTGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
32980540 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
32980577 TGGAGATTATGTCCGGGTAAGAC
1 TGGAGATTATGTCCGGGTAAGAC
32980600 TTCGTAAAAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:32985963 original size:94 final size:94
Alignment explanation
Indices: 32985800--32986175 Score: 662
Period size: 94 Copynumber: 4.0 Consensus size: 94
32985790 AATGTGACCG
* * *
32985800 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAAAGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
32985865 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
32985894 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
32985959 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* * * *
32985988 CATATGCTATTTGAATTAAGTAAATTGCCTTACTATAATGAGTTAACATTGGCACTATGTGTACT
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
32986053 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
32986082 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
32986147 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
32986176 GAATGTCGAT
Statistics
Matches: 268, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 268 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:32993574 original size:40 final size:40
Alignment explanation
Indices: 32993518--32993748 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
32993508 GGATATAGCT
* * * *
32993518 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* * * * *
32993557 ACTCACACCAATGCCTTCGAGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* *
32993597 GCTCGCACAAATGCCCTCGGGACTTAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
32993637 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* *
32993677 ACTCGCACAAATGCCTTCGGGACTTAGTCCGAATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
*
32993717 ACTCACACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
32993749 TTATCATCCA
Statistics
Matches: 173, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 6 0.03
40 167 0.97
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
Found at i:32994565 original size:18 final size:18
Alignment explanation
Indices: 32994539--32994613 Score: 114
Period size: 18 Copynumber: 4.2 Consensus size: 18
32994529 TACGATCGTT
32994539 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
32994557 TATGGTACTATTCATGTA
1 TACGGTACTATTCACGTA
*
32994575 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
32994593 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
32994611 TAC
1 TAC
32994614 AGTAGTTGGG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:32997327 original size:41 final size:41
Alignment explanation
Indices: 32997137--32997436 Score: 329
Period size: 41 Copynumber: 7.3 Consensus size: 41
32997127 CGTTTTAACA
* * ** ** *
32997137 AAAATGCCGCTAAA-AACTGAGCAAAAGCGGCATTTTCTGTT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTT-TGGT
* * * * *
32997178 AAAACGCCACTAAA-AACAGAGTATTAGTGGCGTTTTCTGTT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTT-TGGT
*
32997219 AAAACGCCGCTAAA-AACAGAGCATTAGCGGCGCTGTTGGT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
* *
32997259 AAAACGCCGCTGAAGAACAGAGCATTAGCGGTGCTTTTGGT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
* * * *
32997300 AAAACGCCGCTAAAGACCTGAGTATTAGCGGCGCTTTTGCT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
*
32997341 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGCG-
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTG-GT
* * *
32997382 AAAACGCCGCTAAAGACCAGAGCATTAGCGGTGCTTTTGCT
1 AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
*
32997423 AAAACGCCACTAAA
1 AAAACGCCGCTAAA
32997437 AGTTACATAA
Statistics
Matches: 227, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
40 16 0.07
41 211 0.93
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (41 bp):
AAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTTGGT
Found at i:32997373 original size:123 final size:122
Alignment explanation
Indices: 32997177--32997437 Score: 382
Period size: 123 Copynumber: 2.1 Consensus size: 122
32997167 CATTTTCTGT
* * *
32997177 TAAAACGCCACTAAAAACAGAGTATTAGTGGCGTTTTCTGTTAAAACGCCGCTAAAAACAGAGCA
1 TAAAACGCCACTAAAAACAGAGTATTAGCGGCGCTTTCTGCTAAAACGCCGCTAAAAACAGAGCA
* *
32997242 TTAGCGGCGCTGTTG-GTAAAACGCCGCTGAAGAACAGAGCATTAGCGGTGCTTTTGG
66 TTAGCGGCGCTGTTGCG-AAAACGCCGCTAAAGAACAGAGCATTAGCGGTGCTTTTGC
* * * *
32997299 TAAAACGCCGCTAAAGACCTGAGTATTAGCGGCGCTTT-TGCTAAAACGCCGCTAAAGACCAGAG
1 TAAAACGCCACTAAA-AACAGAGTATTAGCGGCGCTTTCTGCTAAAACGCCGCTAAA-AACAGAG
* *
32997363 CATTAGCGGCGCTTTTGCGAAAACGCCGCTAAAGACCAGAGCATTAGCGGTGCTTTTGC
64 CATTAGCGGCGCTGTTGCGAAAACGCCGCTAAAGAACAGAGCATTAGCGGTGCTTTTGC
32997422 TAAAACGCCACTAAAA
1 TAAAACGCCACTAAAA
32997438 GTTACATAAC
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
122 32 0.26
123 91 0.73
124 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (122 bp):
TAAAACGCCACTAAAAACAGAGTATTAGCGGCGCTTTCTGCTAAAACGCCGCTAAAAACAGAGCA
TTAGCGGCGCTGTTGCGAAAACGCCGCTAAAGAACAGAGCATTAGCGGTGCTTTTGC
Found at i:32998487 original size:18 final size:19
Alignment explanation
Indices: 32998464--32998502 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
32998454 AGATCTTTTT
32998464 TATTTTT-TATCAAAATAA
1 TATTTTTATATCAAAATAA
*
32998482 TATTTTTATATGAAAATAA
1 TATTTTTATATCAAAATAA
32998501 TA
1 TA
32998503 AATATGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
TATTTTTATATCAAAATAA
Found at i:33001856 original size:15 final size:15
Alignment explanation
Indices: 33001836--33001864 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33001826 GGAATAGACC
33001836 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
33001851 AGGTACGTTTTATT
1 AGGTACGTTTTATT
33001865 TCAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:33002646 original size:24 final size:24
Alignment explanation
Indices: 33002619--33002686 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
33002609 ATTATTATTG
*
33002619 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
33002643 AAATATTATTC-TCCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
33002667 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
33002687 CCGTTTAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 2 0.05
24 37 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:33003019 original size:9 final size:9
Alignment explanation
Indices: 33003007--33003127 Score: 118
Period size: 9 Copynumber: 13.6 Consensus size: 9
33002997 TATTTGATAT
*
33003007 CATAATTTA
1 CATAACTTA
33003016 CATAACTTA
1 CATAACTTA
* *
33003025 TATAACATA
1 CATAACTTA
*
33003034 TATAACTTA
1 CATAACTTA
33003043 CATAACTTA
1 CATAACTTA
* *
33003052 TATAACATA
1 CATAACTTA
33003061 CATAACTTA
1 CATAACTTA
* * *
33003070 TATAGCATA
1 CATAACTTA
33003079 CATAACTTA
1 CATAACTTA
*
33003088 TATAACTTA
1 CATAACTTA
* *
33003097 GATAA-ATA
1 CATAACTTA
*
33003105 TATAACTTA
1 CATAACTTA
33003114 CATAACTTA
1 CATAACTTA
33003123 CATAA
1 CATAA
33003128 TACTTAAATA
Statistics
Matches: 90, Mismatches: 21, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
8 6 0.07
9 84 0.93
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:33003029 original size:18 final size:18
Alignment explanation
Indices: 33003007--33003127 Score: 145
Period size: 18 Copynumber: 6.8 Consensus size: 18
33002997 TATTTGATAT
* *
33003007 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
33003025 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
33003043 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
* *
33003061 CATAACTTATATAGCATA
1 CATAACTTATATAACTTA
33003079 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
33003097 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
33003114 CATAACTTACATAA
1 CATAACTTATATAA
33003128 TACTTAAATA
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
17 15 0.17
18 72 0.83
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:33003038 original size:27 final size:27
Alignment explanation
Indices: 33003003--33003127 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
33002993 AATATATTTG
* *
33003003 ATATCATAATTTACATAACTTATATAAC
1 ATAT-ATAACTTACATAACATATATAAC
*
33003031 ATATATAACTTACATAACTTATATAAC
1 ATATATAACTTACATAACATATATAAC
* * * *
33003058 ATACATAACTTATATAGCATACATAAC
1 ATATATAACTTACATAACATATATAAC
* *
33003085 TTATATAACTTAGATAA-ATATATAAC
1 ATATATAACTTACATAACATATATAAC
* *
33003111 TTACATAACTTACATAA
1 ATATATAACTTACATAA
33003128 TACTTAAATA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.27
27 57 0.68
28 4 0.05
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (27 bp):
ATATATAACTTACATAACATATATAAC
Found at i:33008810 original size:21 final size:21
Alignment explanation
Indices: 33008777--33008827 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
33008767 ACAACTTAGA
*
33008777 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
33008798 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
33008819 GCAGAGGCA
1 GCAGAGGCA
33008828 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:33009128 original size:31 final size:31
Alignment explanation
Indices: 33009082--33009148 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
33009072 TGGTTGTATT
* *
33009082 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
33009113 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
33009144 TTTTA
1 TTTTA
33009149 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:33009247 original size:43 final size:43
Alignment explanation
Indices: 33009223--33009429 Score: 351
Period size: 43 Copynumber: 4.8 Consensus size: 43
33009213 GTAAAAAAAG
*
33009223 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTTCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
33009266 CGTCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
*
33009309 CGCCGCTAAAAGCCTTGACCTTTAGCGGCACTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
**
33009352 CGCCGCTAAAAGCCTTGACCTTTAGTAGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
33009395 CGCCGCTAAAAGCCTTGACTTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
33009430 TTCCAATAAA
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 153 1.00
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:33012230 original size:2 final size:2
Alignment explanation
Indices: 33012223--33012250 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
33012213 ATGTGCAAAC
33012223 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33012251 GTGCAAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33016766 original size:37 final size:37
Alignment explanation
Indices: 33016707--33016815 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
33016697 AGCTCAGACG
* *
33016707 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
33016744 AAATCTCTACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
33016781 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
33016816 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:33016931 original size:48 final size:48
Alignment explanation
Indices: 33016860--33017245 Score: 583
Period size: 48 Copynumber: 8.0 Consensus size: 48
33016850 TGTTACAACA
* * * * * *
33016860 TTCACATTAGCCATTTGGCTTTACCACATATTCGTATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
**
33016908 TTCACATTCCCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
33016956 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * * * * *
33017004 TTCATATTAGCTATTCAGCTTTACCACATACACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
33017052 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
33017100 TTCTCATTAGCCACTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
33017148 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
33017196 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
33017244 TT
1 TT
33017246 ATTTATCTTA
Statistics
Matches: 304, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 304 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:33017047 original size:144 final size:144
Alignment explanation
Indices: 33016860--33017245 Score: 655
Period size: 144 Copynumber: 2.7 Consensus size: 144
33016850 TGTTACAACA
** * * **
33016860 TTCACATTAGCCATTTGGCTTTACCACATATTCGTATCTCATACATATTTCACATTCCCCATTCG
1 TTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
*
33016925 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCACTCGGCTTTACCACATATACA
33016990 TATCACACATATAT
131 TATCACACATATAT
* * * *
33017004 TTCATATTAGCTATTCAGCTTTACCACATACACATATCTCATACATATTTCACATTAGCCATTCA
1 TTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
*
33017069 GCTTTACCACATATACATATCACACATATATTTCTCATTAGCCACTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCACTCGGCTTTACCACATATACA
33017134 TATCACACATATAT
131 TATCACACATATAT
*
33017148 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
33017213 GCTTTACCACATATACATATCACACATATATTT
66 GCTTTACCACATATACATATCACACATATATTT
33017246 ATTTATCTTA
Statistics
Matches: 225, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
144 225 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (144 bp):
TTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATATTTCACATTAGCCACTCGGCTTTACCACATATACA
TATCACACATATAT
Found at i:33021061 original size:2 final size:2
Alignment explanation
Indices: 33021054--33021080 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
33021044 GAGACTAGTC
33021054 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
33021081 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33022772 original size:18 final size:19
Alignment explanation
Indices: 33022749--33022784 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
33022739 AACTTGGCAC
*
33022749 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
33022767 CATAATTCAATTAATTTA
1 CATAATTCAATTAATTTA
33022785 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:33023114 original size:30 final size:30
Alignment explanation
Indices: 33023080--33023140 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33023070 TCCTTAATTC
33023080 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
33023110 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
33023140 A
1 A
33023141 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:33025073 original size:40 final size:40
Alignment explanation
Indices: 33024989--33025213 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
33024979 TCGAATGATG
* *
33024989 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
33025028 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
33025069 TCCGGGCTAAG-CCCGAAGGAATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
33025108 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
33025148 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
33025187 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
33025214 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
39 34 0.21
40 117 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:33025236 original size:119 final size:119
Alignment explanation
Indices: 33024989--33025220 Score: 290
Period size: 119 Copynumber: 1.9 Consensus size: 119
33024979 TCGAATGATG
* * *
33024989 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
* * ***
33025054 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGAATTGGTGTGAGTTACTAAA
66 GTACGAGTTACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAAA
* **
33025108 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCAT
* *
33025171 TTGTACGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTGAACGAGT
64 TTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGAATTGGAACGAGT
33025221 AGCTATATTC
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 3 0.03
119 70 0.73
120 23 0.24
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAAA
Found at i:33025244 original size:119 final size:119
Alignment explanation
Indices: 33024989--33025246 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
33024979 TCGAATGATG
* * * *
33024989 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAATCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
* * ***
33025054 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGAATTGGTGTGAGTTACTAAA
66 GTACGAGTTACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAAA
* * **
33025108 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAATCCCGAAGGC-TTTGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
33025171 TTGTACGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGAATTGGAACGAGTTA-CTAAA
* *
33025228 TTC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
33025247 TACGTGATTC
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 86 0.74
120 28 0.24
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAATCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAAA
Found at i:33029236 original size:2 final size:2
Alignment explanation
Indices: 33029229--33029253 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33029219 AGCATTGAGT
33029229 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
33029254 TAGTTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33038804 original size:37 final size:37
Alignment explanation
Indices: 33038763--33038839 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
33038753 ATTTGTATAA
33038763 GTAAACTTCTGGTTTACTTTTAACATGCATTTCAATT
1 GTAAACTTCTGGTTTACTTTTAACATGCATTTCAATT
33038800 GTAAACTTCTGGTTTACTTTTAACATGCATTTCAATT
1 GTAAACTTCTGGTTTACTTTTAACATGCATTTCAATT
33038837 GTA
1 GTA
33038840 CTAATAATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.45
Consensus pattern (37 bp):
GTAAACTTCTGGTTTACTTTTAACATGCATTTCAATT
Found at i:33057438 original size:45 final size:45
Alignment explanation
Indices: 33057371--33057487 Score: 171
Period size: 45 Copynumber: 2.6 Consensus size: 45
33057361 AAACCATAGG
* *
33057371 ATCGAGATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGC
*
33057416 ATCGATATATGTGTTTTTGTGTAAGACCACGTCTAGGACGTTGGC
1 ATCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGC
* * * *
33057461 ATCGATCTATATGGTTACGTGTAAGAC
1 ATCGATATATGTGTTTTCGTGTAAGAC
33057488 TATGTTTGGG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (45 bp):
ATCGATATATGTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGC
Found at i:33065518 original size:29 final size:27
Alignment explanation
Indices: 33065484--33065586 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
33065474 TACTCGATCA
33065484 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
33065513 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
33065542 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
33065571 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
33065587 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:33073565 original size:29 final size:27
Alignment explanation
Indices: 33073531--33073633 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
33073521 TACTCGATCA
33073531 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
33073560 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
33073589 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
33073618 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
33073634 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:33079363 original size:43 final size:42
Alignment explanation
Indices: 33079243--33079412 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 42
33079233 AGCTTGTACA
* * * * *
33079243 ATGCCAACGTCCCAGACGTGATCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT-G
** * * *
33079286 ATGCCCCTATCCCAGACAGGGTCTTATACGAAATCAAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATG
* * *
33079328 ATGTCGATGTCCCATACATGGTCTTACACGTAAATCTCAAAT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAATATG
* * *
33079372 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT
33079413 CAGAATCCTA
Statistics
Matches: 100, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
41 5 0.05
42 25 0.25
43 37 0.37
44 27 0.27
45 6 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATG
Found at i:33086448 original size:40 final size:40
Alignment explanation
Indices: 33086379--33086582 Score: 196
Period size: 40 Copynumber: 5.1 Consensus size: 40
33086369 TGAATGATAC
* * * * * * *
33086379 CCGGGCTAAGTCCCAAAGACATTTATGCTAGTATTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTTATAT
* * * * *
33086419 CCGGGTTAAGACCTGAAGGCAATTGTGCTAGT-GACTACAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-TTATAT
*
33086459 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAGTTATAT
* * *
33086499 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTTATAT
* ** *
33086539 CCGGGCTAAGACCCGAAGGCATTTGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTTATAT
33086579 CCGG
1 CCGG
33086583 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 133 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTTATAT
Found at i:33086525 original size:80 final size:80
Alignment explanation
Indices: 33086413--33086582 Score: 225
Period size: 80 Copynumber: 2.1 Consensus size: 80
33086403 ATGCTAGTAT
* * *
33086413 TTATATCCGGGTTAAGACCTGAAGGCAATTGTGCTAGT-GACTACATCCGGGCTAAGACCCGAAG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCG-CTACATCCGGGCTAAGACCCGAAG
33086477 GCATTCGTGCAAGTCG
65 GCATTCGTGCAAGTCG
* * * *
33086493 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATATCCGGGCTAAGACCCGAAGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGCTACATCCGGGCTAAGACCCGAAGG
* ** *
33086558 CATTTGTGCGTGTGG
66 CATTCGTGCAAGTCG
33086573 TTATATCCGG
1 TTATATCCGG
33086583 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 77 0.99
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGCTACATCCGGGCTAAGACCCGAAGG
CATTCGTGCAAGTCG
Found at i:33094471 original size:79 final size:80
Alignment explanation
Indices: 33094352--33094554 Score: 241
Period size: 79 Copynumber: 2.5 Consensus size: 80
33094342 TGAATGATAC
* * ** * *
33094352 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAT-TTATATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-TGTTATATCCGGGCTAAGACCCGAAGGCAATT
*
33094416 GTGCTAGT-GACTACAT
65 GTGCAAGTCG-CTACAT
* *
33094432 CC-GGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAAGACCCGAAGGCAATTG
* *
33094496 TGCAAGTCGTTATAT
66 TGCAAGTCGCTACAT
** *
33094511 CCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGG
33094555 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 64 0.60
80 41 0.39
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAAGACCCGAAGGCAATTG
TGCAAGTCGCTACAT
Found at i:33094548 original size:40 final size:40
Alignment explanation
Indices: 33094352--33094554 Score: 221
Period size: 40 Copynumber: 5.1 Consensus size: 40
33094342 TGAATGATAC
* * ** * **
33094352 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTATTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * ** *
33094392 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGTTATAT
*
33094432 CC-GGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * *
33094471 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
**
33094511 CCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
33094551 CCGG
1 CCGG
33094555 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
38 3 0.02
39 29 0.21
40 103 0.75
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
Found at i:33101367 original size:16 final size:16
Alignment explanation
Indices: 33101348--33101378 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33101338 CTTCTTCACT
33101348 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
33101364 TACTTACTTACTTAA
1 TACTCACTTACTTAA
33101379 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:33101384 original size:20 final size:20
Alignment explanation
Indices: 33101345--33101384 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33101335 AAACTTCTTC
* *
33101345 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
33101365 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
33101385 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:33101760 original size:55 final size:53
Alignment explanation
Indices: 33101617--33101789 Score: 206
Period size: 53 Copynumber: 3.2 Consensus size: 53
33101607 ATCCTTTTGA
* *
33101617 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
33101670 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G
* ***
33101724 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
33101777 AAACCTTACCAAT
1 -AA-CTTACCAAT
33101790 TGTCATGCCT
Statistics
Matches: 101, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 47 0.47
54 9 0.09
55 41 0.41
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Done.