Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 112 of 425
Found at i:33109280 original size:40 final size:39
Alignment explanation
Indices: 33109158--33109284 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
33109148 AAATTGAATG
* * *
33109158 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTG--ATT
* **
33109197 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGATT
*
33109237 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGATT
33109277 ATATCCGG
1 ATATCCGG
33109285 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
39 14 0.19
40 58 0.78
41 1 0.01
42 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGATT
Found at i:33117260 original size:40 final size:39
Alignment explanation
Indices: 33117137--33117264 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
33117127 AAATTGAATG
* * * *
33117137 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTG--ATT
* **
33117177 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGATT
*
33117217 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGATT
33117257 ATATCCGG
1 ATATCCGG
33117265 TTATATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 71 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGATT
Found at i:33126394 original size:43 final size:43
Alignment explanation
Indices: 33126347--33126431 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
33126337 AATTAGAAAG
*
33126347 ATTTCAATTAATCAACCTAGGGTTAGATGTTATTAGTCTCGAT
1 ATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGAT
33126390 ATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGA
1 ATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGA
33126432 GAGAGATAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (43 bp):
ATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGAT
Found at i:33131898 original size:46 final size:45
Alignment explanation
Indices: 33131705--33131980 Score: 171
Period size: 46 Copynumber: 5.9 Consensus size: 45
33131695 TGGGGTAATG
* * * * *
33131705 TGCCGATGCCATATCCCAGACATGGTCTTACACAAGTTCTAGCATGTCTG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-A-CATCT-TA
** * *
33131755 TGTTGATGCTATGTCTCAGACATGGTCTTACACT-G-ACACATCTCGTA
1 TGCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCACATCT--TA
* * * * * ** *
33131802 -GCTGATGCATGTCCCAAACATGTCTTACACTGGTTTATGTCTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCT-TA
* *
33131847 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTTAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTT-A
* * * * ** *
33131893 TGCCGATGTCATGTCTCTGACATGGTCTTACACTGGCTCTCATAATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACATCTTA
33131940 TGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
33131981 ATAACCCATA
Statistics
Matches: 177, Mismatches: 40, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
44 10 0.06
45 13 0.07
46 73 0.41
47 27 0.15
48 25 0.14
49 2 0.01
50 27 0.15
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTTA
Found at i:33131923 original size:94 final size:91
Alignment explanation
Indices: 33131759--33131980 Score: 238
Period size: 94 Copynumber: 2.4 Consensus size: 91
33131749 TGTCTGTGTT
* *
33131759 GATGCTATGTCTCAGACATGGTCTTACACT-G-ACACATCTCGTAGCTGATGCATGTCCCAAACA
1 GATGC-ATGTCCCAGACAT-GTCTTACACTAGCACACATCTC-TAGCCGATGCATGTCCCAAACA
* **
33131822 TGTCTTACACTGG-T-TTATGTCTCGAGGCC
63 TGTCTTACACTGGCTCTCAT-AAT-GAGGCC
* **
33131851 GATGCATGTCCCAGACATGTCTTACACTAGCACACATCT-TAATGCCGATGTCATGTCTCTGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCT-A-GCCGATG-CATGTCCCAAACA
*
33131915 TGGTCTTACACTGGCTCTCATAATGTGGCC
63 T-GTCTTACACTGGCTCTCATAATGAGGCC
*
33131945 GATGCATGTCCCAGACATGTCTTACACTAGCTCACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACA
33131981 ATAACCCATA
Statistics
Matches: 112, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
90 11 0.10
91 14 0.12
92 19 0.17
93 11 0.10
94 52 0.46
95 2 0.02
96 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCTAGCCGATGCATGTCCCAAACATGT
CTTACACTGGCTCTCATAATGAGGCC
Found at i:33135031 original size:15 final size:15
Alignment explanation
Indices: 33135011--33135040 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
33135001 CCTTACCTTC
33135011 TTGTACTAACACTGG
1 TTGTACTAACACTGG
33135026 TTGTACTAACACTGG
1 TTGTACTAACACTGG
33135041 GGCCTCGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (15 bp):
TTGTACTAACACTGG
Found at i:33143924 original size:746 final size:747
Alignment explanation
Indices: 33138632--33144992 Score: 11881
Period size: 747 Copynumber: 8.5 Consensus size: 747
33138622 ACAAAGCCAA
* *
33138632 TACAAGACAATCTCATGCAACCAATTCAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
1 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
33138697 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
66 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
* * *
33138762 AAAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACATAAAACGCAAG
131 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
* *
33138827 TCTAGTTCCCTATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTGAT
196 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
* * * * * *
33138892 AGTGTGAT-GATATCTCTGACTTTCGTTGATCTTTGAGCTAGATAGGCGACACGATAAGAAAATG
261 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
* *
33138956 AAAAGGAGAGGCAGTAAGCATAAAGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
326 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
*
33139021 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAA
391 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
*
33139086 TACACATCGTATATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
456 TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
*
33139151 CGCAACACAGTTATACTTTCCTCTTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
521 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
33139216 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
586 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
* *
33139281 TCTTACATAAGCTCTAGCATGTGTGTGTCGATTCTATGTCTCAGACATGGTCTTACACTGACACA
651 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
*
33139346 TCTCGTAGCTGATGCATGTGCCAAACATGTCT
716 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
33139378 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
1 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
* * *
33139443 ATCTATGAAGGTAACATCTTTGTGTATAAATAAAGATCAATATTAACCATCATTCGAAGCTTAAT
66 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
33139508 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
131 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
*
33139573 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTCCGATTAAT
196 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
*
33139638 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGCTGGCACTATAAGAAAATG
261 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
*
33139703 AAAAGGAGAGGGAGTAAGCATAAGGCATAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
326 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
33139768 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
391 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
*
33139833 TACATATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
456 TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
33139898 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
521 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
*
33139963 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACATGG
586 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
*
33140028 TCTTACACAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
651 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
*
33140093 TCTCGTAGCTGATGCATGTCTCAAACATGTCT
716 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
*
33140125 TACAAGACAATCTTATGCAACCAGTTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
1 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
*
33140190 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATCAACCATCATTCGAAGCTTAAT
66 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
33140255 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
131 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
* *
33140320 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATACTTCGATTGAT
196 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
33140385 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
261 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
*
33140450 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAAATTACAACATAACTTT
326 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
* *
33140515 ACCATTCGTCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAAATTACTCATTAATATTCAG
391 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
*
33140580 TACATATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
456 TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
33140645 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
521 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
*
33140710 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGGCGATGCCATGTCCCAGACTTGG
586 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
33140775 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
651 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
*
33140840 TCTCGTAGCTGATGCATGTGCCAAACATGTCT
716 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
33140872 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
1 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
* * *
33140937 ATCTATGAAGGTAACATCTTTGTATATAAATAAAGGTCAATATTAACCATCATTCGAAGCTTAAT
66 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
33141002 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
131 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
* *
33141067 TCTAGTTCCTCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTCCGATTAAT
196 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
33141132 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
261 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
33141197 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
326 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
33141262 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
391 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
*
33141327 TACATATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
456 TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
33141392 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
521 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
*
33141457 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGACCCAGACTTGG
586 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
*
33141522 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACCGACACA
651 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
33141587 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
716 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
33141619 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
1 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
*
33141684 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATCAACCATCATTCGAAGCTTAAT
66 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
33141749 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
131 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
* *
33141814 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATACTTCGATTGAT
196 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
* *
33141879 AGTGTGATCGATATCTCTGGCTTCCATTGATCCTTCAGCTAGATAGGTGGCACTATAAGAAAATG
261 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
*
33141944 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCAAATAAATAAATTTACAACATAACTTT
326 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
* *
33142009 ACCATTCATCAACAAGCTAGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTTAG
391 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
33142074 TACACATCGTTTATCATAAAATTGGGCTCATATTC--TATATACCAAACAGGTACCAGTACTACT
456 TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
* *
33142137 CGCAACACAGTTATGCTTTCCTCGTTAACTTGAAATCATGACTTTCTCCGTTGAACCATTTGGAA
521 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
* *
33142202 CACTATCAAATATTCATTAAGCCTTAAACATGGGGTAAGGTGGCGATGCCATGTCCCAGACTTGG
586 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
*
33142267 TCTTACATAAGCTCTAGCATGTTTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
651 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
33142332 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
716 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
33142364 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
1 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
*
33142429 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATAAATATTAACCATCATTCGAAGCTTAAT
66 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
33142494 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
131 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
*
33142559 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACTGAATGCTTCGATTAAT
196 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
*
33142624 AGTGTGATCGATATCTCTAACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
261 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
33142689 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACAT-AATAAATTTACAACATAACTTT
326 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
*
33142753 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTTAG
391 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
33142818 TACACATCGTTTATCATAAAATTGGGCTCA-ATTCTATATATACCAAACAGGTACCAGTACTACT
456 TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
33142882 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
521 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
33142947 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
586 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
*
33143012 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTAACACA
651 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
33143077 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
716 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
33143109 TACAAGACAATCTTATGC-ACACAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACT
1 TACAAGACAATCTTATGCAAC-CAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACT
*
33143173 CATCTATGAAGGTAACATCTTTGTATATAAATCAATATGAATATTAACCATCATTCGAAGCTTAA
65 CATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAA
33143238 TACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAA
130 TACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAA
33143303 GTCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAA
195 GTCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAA
*
33143368 TAATGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAAT
260 TAGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAAT
33143433 GAAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTT
325 GAAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTT
33143498 TACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGT-AAACTTACTCATTAATATTCA
390 TACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCA
* *
33143562 ATACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAATAGGTACCAGTACTAC
455 GTACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTAC
* *
33143627 TAGCAACACAGTTATACTTTCCTTGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGA
520 TCGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGA
33143692 ACACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTG
585 ACACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTG
*
33143757 GTCTTACATAAGCTCTAGCATGTCTATGTCGATGCTATGTCTCAGACATGGTCTTACACTGACAC
650 GTCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACAC
33143822 ATCTCGTAGCTGATGCATGTCCCAAACATGTCT
715 ATCTCGTAGCTGATGCATGTCCCAAACATGTCT
*
33143855 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTCCATTTTACTC
1 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
*
33143920 ATCTATGAAGGTAACATCTTTGTATATAAATCATGATGAATATTAACCATCATTCGAAGCTTAAT
66 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
33143985 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
131 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
*
33144050 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATGCCGAATGCTTCGATTAAT
196 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
* *
33144115 AGTGTGATCGATACCTCTGACTTCCATTGATCCTTCAGCTAGATAGGTGGCACTATAAGAAAATG
261 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
33144180 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
326 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
33144245 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
391 ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
33144310 TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
456 TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
33144375 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
521 CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
* **
33144440 CACTATCAAATATTCATTACGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACAAGG
586 CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
*
33144505 TCTTACACAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
651 TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
*
33144570 TCTCGTAGCTGATGCATGTGCCAAACATGTCT
716 TCTCGTAGCTGATGCATGTCCCAAACATGTCT
33144602 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
1 TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
* *
33144667 ATCTATGAATGTAACATCTTTGTATATAAATCAAGATTAATATTAACCATCATTCGAAGCTTAAT
66 ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
33144732 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
131 ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
*
33144797 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTGAT
196 TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
33144862 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
261 AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
33144927 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
326 AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
33144992 A
391 A
33144993 GTAGTGATTG
Statistics
Matches: 5468, Mismatches: 139, Indels: 15
0.97 0.02 0.00
Matches are distributed among these distances:
743 4 0.00
744 118 0.02
745 1264 0.23
746 999 0.18
747 3083 0.56
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (747 bp):
TACAAGACAATCTTATGCAACCAATTTAGCCACAATAAACAACATTCCATGTGTGCATTTTACTC
ATCTATGAAGGTAACATCTTTGTATATAAATCAAGATGAATATTAACCATCATTCGAAGCTTAAT
ACAAAATGAGAGATTTATCCCAAGTCAACACATTTGGCCAAATTGATAATGACACAAAACACAAG
TCTAGTTCCCCATACATGCCATATTCAAAAATATAAATCAAACTATACCGAATGCTTCGATTAAT
AGTGTGATCGATATCTCTGACTTCCATTGATCCTTGAGCTAGATAGGTGGCACTATAAGAAAATG
AAAAGGAGAGGGAGTAAGCATAAGGCTTAGTAAGTTTCACATAAATAAATTTACAACATAACTTT
ACCATTCATCAACAAGCTCGTAATATACAATTGGGCATAAGTAAAACTTACTCATTAATATTCAG
TACACATCGTTTATCATAAAATTGGGCTCATATTCTATATATACCAAACAGGTACCAGTACTACT
CGCAACACAGTTATACTTTCCTCGTTAACTTGAAATCATGACTTTCACCGTTGAACCATTTGGAA
CACTATCAAATATTCATTAAGCCTCAAACATGGGGTAAGGTGCCGATGCCATGTCCCAGACTTGG
TCTTACATAAGCTCTAGCATGTCTGTGTCGATGCTATGTCTCAGACATGGTCTTACACTGACACA
TCTCGTAGCTGATGCATGTCCCAAACATGTCT
Found at i:33157239 original size:33 final size:33
Alignment explanation
Indices: 33157202--33157271 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
33157192 TTTTGAACTT
* *
33157202 GTTTGAATGCATTTTAAGGCATAAAATTTTTTG
1 GTTTGAATGCATTTTAAGGCATAAAAATGTTTG
33157235 GTTTGAATGCATTTTAAGGCATAAAAATGTTTG
1 GTTTGAATGCATTTTAAGGCATAAAAATGTTTG
33157268 GTTT
1 GTTT
33157272 TAGGTTGGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.44
Consensus pattern (33 bp):
GTTTGAATGCATTTTAAGGCATAAAAATGTTTG
Found at i:33159386 original size:25 final size:25
Alignment explanation
Indices: 33159355--33159405 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
33159345 GTGTGGATAT
33159355 AGGGACACGCTCGTGTATCTTCAAC
1 AGGGACACGCTCGTGTATCTTCAAC
33159380 AGGGACACGCTCGTGTATCTTCAAC
1 AGGGACACGCTCGTGTATCTTCAAC
33159405 A
1 A
33159406 CGCCCGTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (25 bp):
AGGGACACGCTCGTGTATCTTCAAC
Found at i:33161120 original size:50 final size:50
Alignment explanation
Indices: 33161045--33161288 Score: 238
Period size: 50 Copynumber: 4.9 Consensus size: 50
33161035 ACCGAAGCTC
* * * * *
33161045 TCTGGTACGCATAGTAGCATACACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * *
33161095 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACATGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * ** *
33161145 TCTGATACACGTAGTAGCCTGCAGTTAGTACTACGCACGTGATCAAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * * * * *
33161197 -CGGGTTCGCATAGTAGCCTGCACTTAGTACTACAAATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* *
33161246 TCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGAC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
33161289 TCACAACGGA
Statistics
Matches: 149, Mismatches: 42, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
49 3 0.02
50 112 0.75
51 33 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:33161223 original size:101 final size:100
Alignment explanation
Indices: 33161106--33161287 Score: 258
Period size: 101 Copynumber: 1.8 Consensus size: 100
33161096 CTGGTACATG
* * * *
33161106 TAGTAGCCTGCACTTAGTACTACACACAT-GACTTAACCATCTGATACACGTAGTAGCCTGCAGT
1 TAGTAGCCTGCACTTAGTACTACA-A-ATCGACCTAACAATCTGATACACGTAGTAGCCTACACT
*
33161170 TAGTACTACGCACGTGATCAAAGTTAACGGGTTCGCA
64 TAGTACTACACACGTGATCAAAGTTAACGGGTTCGCA
* * *
33161207 TAGTAGCCTGCACTTAGTACTACAAATGCGACCTATCAATCTGGTACATGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACAAAT-CGACCTAACAATCTGATACACGTAGTAGCCTACACTT
33161272 AGTACTACACACGTGA
65 AGTACTACACACGTGA
33161288 CTCACAACGG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
99 2 0.03
100 1 0.01
101 68 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACAAATCGACCTAACAATCTGATACACGTAGTAGCCTACACTTA
GTACTACACACGTGATCAAAGTTAACGGGTTCGCA
Found at i:33161667 original size:19 final size:20
Alignment explanation
Indices: 33161637--33161683 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
33161627 AAGAACATGT
33161637 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
33161658 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
33161677 TATATAT
1 TATATAT
33161684 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:33165170 original size:11 final size:10
Alignment explanation
Indices: 33165126--33165171 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
33165116 TCATTTATCA
33165126 TTATATTATT
1 TTATATTATT
33165136 TTATA-TATT
1 TTATATTATT
*
33165145 GT-TA-TATT
1 TTATATTATT
33165153 TTATATTATT
1 TTATATTATT
33165163 TATATATTA
1 T-TATATTA
33165172 AAAGCTAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 7 0.23
9 7 0.23
10 10 0.32
11 7 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (10 bp):
TTATATTATT
Found at i:33172211 original size:45 final size:45
Alignment explanation
Indices: 33172174--33172312 Score: 172
Period size: 45 Copynumber: 3.1 Consensus size: 45
33172164 GAACAAGTTG
* *
33172174 AAGATAGCAGATCTTATTTCTCTGTATTCGACAGGGAACAGATCA
1 AAGATAGTAGATCTTATCTCTCTGTATTCGACAGGGAACAGATCA
* * * * *
33172219 AAAATAGTAGATCTTATCTCTCTGAAATT-GACGGGGAGCAGATCC
1 AAGATAGTAGATCTTATCTCTCTG-TATTCGACAGGGAACAGATCA
* * *
33172264 AAGATAATAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCG
1 AAGATAGTAGATCTTATCTCTCTGTATTCGACAGGGAACAGATCA
33172309 AAGA
1 AAGA
33172313 CATAATAGAT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 3 0.04
45 74 0.93
46 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (45 bp):
AAGATAGTAGATCTTATCTCTCTGTATTCGACAGGGAACAGATCA
Found at i:33172286 original size:90 final size:90
Alignment explanation
Indices: 33172181--33172574 Score: 369
Period size: 90 Copynumber: 4.5 Consensus size: 90
33172171 TTGAAGATAG
* * * * *
33172181 CAGATCTTATTTCTCTGTATTCGACAGGGAACAGATCAAAAAT-AGTAGATCTTATCTCTCTGAA
1 CAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCAAAGATGA-CAGATCTTATCTCTCTGTA
*
33172245 ATTGACGGGGAGCAGATCCAAGATAA
65 ATTGACGGGGAGCAGATCCAAGATGA
* * * * *
33172271 TAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAATAGATCTGA---C-CT-T
1 CAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATC-AA-AGATGACAGATCTTATCTCTCTGT
* *
33172331 CA-T--C-GGG-GCAGATCCAAGATGG
64 AATTGACGGGGAGCAGATCCAAGATGA
* * * * *
33172353 CGGATCTTATCTCTCTGTAATAGACAGGGGGCAGATCCAAGATGACAGATCTTATCTCTCTGTAA
1 CAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCAAAGATGACAGATCTTATCTCTCTGTAA
* *
33172418 TAGACGGGGAGTAGATCCAAGATGA
66 TTGACGGGGAGCAGATCCAAGATGA
* * * * * * *
33172443 CAGATCTTATCTCTCCGTAATGGACGGGGAGTAAATCCAAGATGACAGATCTTATCTCTCTGTAA
1 CAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCAAAGATGACAGATCTTATCTCTCTGTAA
* * * *
33172508 TGGATGGAGAGTAGATCCAAGATGA
66 TTGACGGGGAGCAGATCCAAGATGA
* * * *
33172533 CAGATCTTATCTTTCTATATTCGACGGGGAGCAGATCGAAGA
1 CAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCAAAGA
33172575 CGTAGCAGAT
Statistics
Matches: 250, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
80 11 0.04
81 1 0.00
82 45 0.18
83 4 0.02
84 3 0.01
85 2 0.01
86 1 0.00
87 1 0.00
88 3 0.01
89 4 0.02
90 161 0.64
91 2 0.01
92 11 0.04
93 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (90 bp):
CAGATCTTATCTCTCTGTATTCGACAGGGAGCAGATCAAAGATGACAGATCTTATCTCTCTGTAA
TTGACGGGGAGCAGATCCAAGATGA
Found at i:33172569 original size:45 final size:45
Alignment explanation
Indices: 33172338--33172574 Score: 314
Period size: 45 Copynumber: 5.3 Consensus size: 45
33172328 CTTCATCGGG
* *
33172338 GCAGATCCAAGATGGCGGATCTTATCTCTCTGTAATAGACAGGGG-
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTAATAGAC-GGGGA
33172383 GCAGATCCAAGATGACAGATCTTATCTCTCTGTAATAGACGGGGA
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTAATAGACGGGGA
* * *
33172428 GTAGATCCAAGATGACAGATCTTATCTCTCCGTAATGGACGGGGA
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTAATAGACGGGGA
* * * * *
33172473 GTAAATCCAAGATGACAGATCTTATCTCTCTGTAATGGATGGAGA
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTAATAGACGGGGA
* * * * *
33172518 GTAGATCCAAGATGACAGATCTTATCTTTCTATATTCGACGGGGA
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTAATAGACGGGGA
*
33172563 GCAGATCGAAGA
1 GCAGATCCAAGA
33172575 CGTAGCAGAT
Statistics
Matches: 173, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 4 0.02
45 169 0.98
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (45 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTAATAGACGGGGA
Found at i:33172643 original size:78 final size:82
Alignment explanation
Indices: 33172546--33172828 Score: 254
Period size: 88 Copynumber: 3.4 Consensus size: 82
33172536 ATCTTATCTT
* * * *
33172546 TCTATATTCGACGGGGAGCAGATCGAAGACGTAGCAGATTTGA-C-C-TTTA-TT-AAGGCACAT
1 TCTATGTTCGACGGAGAGCAGATCGAAGACATAGCAGATTTGATCACGTTTACTTGAA-GCAAAT
33172606 CCAAGATGATTTGACATC
65 CCAAGATGATTTGACATC
* *
33172624 TCTATGTTCGAAGGAGAGCAGATCGAAGACATAGCTGATTTGACTTTCACGTGTTTACGTTGAAG
1 TCTATGTTCGACGGAGAGCAGATCGAAGACATAGCAGATTTGA---TCAC--GTTTAC-TTGAAG
* *
33172689 CAAATCTAAGATGATTTGGCATC
60 CAAATCCAAGATGATTTGACATC
*
33172712 TCTATGTTCGACGGAGAGCAGATCGAAGACATAG-ATGATTTGGCTTTCACGTGTTTACGTTGAA
1 TCTATGTTCGACGGAGAGCAGATCGAAGACATAGCA-GATTT-G--ATCAC--GTTTAC-TTGAA
* **
33172776 GCAAATCTAAGATGATTTGGTATC
59 GCAAATCCAAGATGATTTGACATC
* * * *
33172800 TCTGTGTTTGACGGAGAGCCGATCAAAGA
1 TCTATGTTCGACGGAGAGCAGATCGAAGA
33172829 TATCGACATG
Statistics
Matches: 174, Mismatches: 16, Indels: 20
0.83 0.08 0.10
Matches are distributed among these distances:
78 38 0.22
82 1 0.01
83 1 0.01
86 4 0.02
88 127 0.73
89 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (82 bp):
TCTATGTTCGACGGAGAGCAGATCGAAGACATAGCAGATTTGATCACGTTTACTTGAAGCAAATC
CAAGATGATTTGACATC
Found at i:33172759 original size:88 final size:88
Alignment explanation
Indices: 33172608--33172828 Score: 361
Period size: 88 Copynumber: 2.5 Consensus size: 88
33172598 AGGCACATCC
* * *
33172608 AAGATGATTTGACATCTCTATGTTCGAAGGAGAGCAGATCGAAGACATAGCTGATTTGACTTTCA
1 AAGATGATTTGGCATCTCTATGTTCGACGGAGAGCAGATCGAAGACATAGATGATTTGACTTTCA
33172673 CGTGTTTACGTTGAAGCAAATCT
66 CGTGTTTACGTTGAAGCAAATCT
*
33172696 AAGATGATTTGGCATCTCTATGTTCGACGGAGAGCAGATCGAAGACATAGATGATTTGGCTTTCA
1 AAGATGATTTGGCATCTCTATGTTCGACGGAGAGCAGATCGAAGACATAGATGATTTGACTTTCA
33172761 CGTGTTTACGTTGAAGCAAATCT
66 CGTGTTTACGTTGAAGCAAATCT
* * * * *
33172784 AAGATGATTTGGTATCTCTGTGTTTGACGGAGAGCCGATCAAAGA
1 AAGATGATTTGGCATCTCTATGTTCGACGGAGAGCAGATCGAAGA
33172829 TATCGACATG
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 124 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (88 bp):
AAGATGATTTGGCATCTCTATGTTCGACGGAGAGCAGATCGAAGACATAGATGATTTGACTTTCA
CGTGTTTACGTTGAAGCAAATCT
Found at i:33172807 original size:41 final size:41
Alignment explanation
Indices: 33172674--33172808 Score: 105
Period size: 41 Copynumber: 3.1 Consensus size: 41
33172664 TGACTTTCAC
*
33172674 GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCT
1 GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGTATCTCT
* * * * * *
33172715 ATGTTCGACG--GAGAGCAGATCGAAGACATAGATGATTTGGCTTTCAC-
1 GTGTT-TACGTTGA-AGCAAATC-----TA-AGATGATTTGG-TATCTCT
33172762 GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGTATCTCT
1 GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGTATCTCT
33172803 GTGTTT
1 GTGTTT
33172809 GACGGAGAGC
Statistics
Matches: 69, Mismatches: 13, Indels: 24
0.65 0.12 0.23
Matches are distributed among these distances:
40 6 0.09
41 28 0.41
42 4 0.06
46 4 0.06
47 22 0.32
48 5 0.07
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (41 bp):
GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGTATCTCT
Found at i:33174337 original size:5 final size:5
Alignment explanation
Indices: 33174300--33174400 Score: 50
Period size: 5 Copynumber: 20.0 Consensus size: 5
33174290 ATAAAATGAC
* *
33174300 ATATAT ATATT ATTTTT ATATT ATCCATC ATATT ATATT -TATT ATCATT
1 ATAT-T ATATT A-TATT ATATT AT--ATT ATATT ATATT ATATT AT-ATT
* * * * *
33174349 -TATT -T-TT AAATT ATATGT A-ATT AAATT TTATT ATGTT ATATG ATATT
1 ATATT ATATT ATATT ATAT-T ATATT ATATT ATATT ATATT ATATT ATATT
33174396 ATATT
1 ATATT
33174401 GTTTTATATA
Statistics
Matches: 73, Mismatches: 13, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
3 2 0.03
4 10 0.14
5 44 0.60
6 13 0.18
7 4 0.05
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:33177174 original size:20 final size:20
Alignment explanation
Indices: 33177151--33177197 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
33177141 AGCTCTATCC
33177151 AGCTCAATTCAGCTCATTTG
1 AGCTCAATTCAGCTCATTTG
*** *
33177171 AGCTTGTTTCATCTCATTTG
1 AGCTCAATTCAGCTCATTTG
33177191 AGCTCAA
1 AGCTCAA
33177198 CCGAGCTTAC
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (20 bp):
AGCTCAATTCAGCTCATTTG
Found at i:33181244 original size:37 final size:38
Alignment explanation
Indices: 33181203--33181284 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 38
33181193 TTCACATCAT
* *
33181203 TACCACATTATAATCACTATCACATGGTATGAA-AACA
1 TACCACATCATAATCACTATCACATGGCATGAATAACA
* * *
33181240 TACCA-A-CATACTTACTGTCACATGGCATGAATAACA
1 TACCACATCATAATCACTATCACATGGCATGAATAACA
33181276 TAACCACAT
1 T-ACCACAT
33181285 GTTCTCTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
35 20 0.56
36 6 0.17
37 9 0.25
38 1 0.03
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (38 bp):
TACCACATCATAATCACTATCACATGGCATGAATAACA
Found at i:33183347 original size:20 final size:21
Alignment explanation
Indices: 33183318--33183368 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
33183308 TAGAGGCAAA
*
33183318 GTACACGCCCGCGTG-TTTGG
1 GTACATGCCCGCGTGTTTTGG
33183338 GTACATGCCCGCGTGTTTTGG
1 GTACATGCCCGCGTGTTTTGG
33183359 G-ACATGCCCG
1 GTACATGCCCG
33183369 TCCCCCTCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 23 0.79
21 6 0.21
ACGTcount: A:0.12, C:0.29, G:0.33, T:0.25
Consensus pattern (21 bp):
GTACATGCCCGCGTGTTTTGG
Found at i:33187063 original size:29 final size:29
Alignment explanation
Indices: 33187021--33187078 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
33187011 TCGAGAGAGT
33187021 GTTTCTTGGTTAAGTGCCCTAATGGGTAC
1 GTTTCTTGGTTAAGTGCCCTAATGGGTAC
33187050 GTTTCTTGGTTAAGTGCCCTAATGGGTAC
1 GTTTCTTGGTTAAGTGCCCTAATGGGTAC
33187079 CCTTGAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (29 bp):
GTTTCTTGGTTAAGTGCCCTAATGGGTAC
Found at i:33201253 original size:19 final size:20
Alignment explanation
Indices: 33201229--33201268 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
33201219 TAGTTTAATC
* *
33201229 TAACTAGAG-AGTTTCGGTA
1 TAACTAAAGTAGTTTCAGTA
33201248 TAACTAAAGTAGTTTCAGTA
1 TAACTAAAGTAGTTTCAGTA
33201268 T
1 T
33201269 TCTATCTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
TAACTAAAGTAGTTTCAGTA
Found at i:33207052 original size:47 final size:47
Alignment explanation
Indices: 33206969--33207157 Score: 310
Period size: 47 Copynumber: 4.0 Consensus size: 47
33206959 GTTGAATTTA
* *
33206969 AAGCTTGATAAA-TTGCTCTTAATAATTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
*
33207015 AAGCTTGTTAAATTTGCTCTTAATATTTCCACG-TAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCC-GGATAAGTTACTTAGTT
*
33207062 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGGTAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
*
33207109 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTAGTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
33207156 AA
1 AA
33207158 TTGATACTAG
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
46 12 0.09
47 121 0.90
48 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:33207787 original size:45 final size:45
Alignment explanation
Indices: 33207723--33207942 Score: 297
Period size: 45 Copynumber: 5.0 Consensus size: 45
33207713 TATCGTACAG
* * * *
33207723 TACTATTAGGGCCTTTGAGCCTAGCAGGCTATAATGCCTGTGACA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGATA
* *
33207768 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGGCGGTGATA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGATA
33207813 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
33207858 TACTATTCGGACCTTCGAGCCTAGCAGGCTATAATACCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGATA
*
33207903 TGA-TA-TCGGG-CTTCGAGCATAGCAGG-TGA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCT-ATAATGCCGGTGA
33207943 ATGAATTTGG
Statistics
Matches: 161, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
42 11 0.07
43 16 0.10
44 4 0.02
45 129 0.80
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:33214529 original size:47 final size:47
Alignment explanation
Indices: 33214446--33214634 Score: 319
Period size: 47 Copynumber: 4.0 Consensus size: 47
33214436 GTTGAATTTA
* *
33214446 AAGCTTGATAAA-TTGCTCTTAATAATTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
* *
33214492 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGGTAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
33214539 AAGCTTGTTAAATTTGCTCTTAATATTTCCAGG-TAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCC-GGATAAGTTACTTAGTT
33214586 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
33214633 AA
1 AA
33214635 TTGATACTAG
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
46 13 0.10
47 120 0.89
48 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:33215453 original size:45 final size:45
Alignment explanation
Indices: 33215389--33215549 Score: 211
Period size: 45 Copynumber: 3.6 Consensus size: 45
33215379 TATCGTACAG
*
33215389 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCTGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
33215434 TACTATTCGGGCCTTTGAGCCTAGCAGGTTATAATGTCGGTGTTA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* ** *
33215479 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGTTGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
*
33215524 TGA-TA-TCGGG-CTTCGAGCCTAGCAGG
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGG
33215550 TGAAATGCCA
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
43 16 0.15
44 5 0.05
45 84 0.79
46 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:33217248 original size:61 final size:61
Alignment explanation
Indices: 33217130--33217248 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 61
33217120 TATTCAAAAA
* * *
33217130 TCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTT
1 TCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCCATTACAGTT
* * **
33217191 TCAGAG-TATACTGGGCC-TAGCCCGTATCAGTATCAATCTAGGCTGTAGCCCTATTACA
1 TCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCC-ATTACA
33217249 AGTTGAGATC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
60 30 0.61
61 19 0.39
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (61 bp):
TCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCCATTACAGTT
Found at i:33224867 original size:40 final size:40
Alignment explanation
Indices: 33224823--33225046 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
33224813 GCTACTCGTT
* * *
33224823 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
33224863 CAAATGCCTTCGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
33224902 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
33224942 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
33224982 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
33225023 CAAA-GCCTTCGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGATCTTAGCCCGGA
33225047 CATCATTCGA
Statistics
Matches: 171, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 46 0.27
40 117 0.68
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:33230576 original size:71 final size:70
Alignment explanation
Indices: 33230488--33230650 Score: 317
Period size: 71 Copynumber: 2.3 Consensus size: 70
33230478 GAGATGTATC
33230488 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33230553 AGGACA
66 AGGA-A
33230559 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33230624 AGGAA
66 AGGAA
33230629 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33230651 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 23 0.25
71 69 0.75
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (70 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGAA
Found at i:33235820 original size:40 final size:40
Alignment explanation
Indices: 33235804--33236038 Score: 356
Period size: 40 Copynumber: 6.0 Consensus size: 40
33235794 AGCCCGGTTA
*
33235804 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
33235844 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
33235884 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
33235924 TAGTAACT--CACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
33235962 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
33236002 TAGTCACTTAGCACAAA-GCCTTCGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCGGATCTTAGTCCGGA
33236039 CATCATTCGA
Statistics
Matches: 185, Mismatches: 5, Indels: 11
0.92 0.02 0.05
Matches are distributed among these distances:
38 38 0.21
39 13 0.07
40 125 0.68
41 9 0.05
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:33235967 original size:118 final size:117
Alignment explanation
Indices: 33235782--33236038 Score: 360
Period size: 118 Copynumber: 2.2 Consensus size: 117
33235772 CGTTCAAATA
* *
33235782 CCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCGGATTTA
1 CCTTC-GGACTTAGCCCGGATT-TAGTAACT--CACAAATGCCTTCGGGACTTATCCCGGATTTA
* *
33235846 GTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAAATG
62 GTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTTAGCACAAA-G
*
33235902 CCTTCGGATCTTAGTCCGGATTTAGTAACTCACAAATGCCTTC-GGATCTTAGT-CCGGATTTAG
1 CCTTCGGA-CTTAGCCCGGATTTAGTAACTCACAAATGCCTTCGGGA-CTTA-TCCCGGATTTAG
*
33235965 TAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAG
63 TAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTTAGCACAAAG
33236020 CCTTCGGACTTAGCCCGGA
1 CCTTCGGACTTAGCCCGGA
33236039 CATCATTCGA
Statistics
Matches: 125, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
117 13 0.10
118 78 0.62
119 12 0.10
120 20 0.16
121 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (117 bp):
CCTTCGGACTTAGCCCGGATTTAGTAACTCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAA
CTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTTAGCACAAAG
Found at i:33235968 original size:78 final size:79
Alignment explanation
Indices: 33235804--33236038 Score: 354
Period size: 78 Copynumber: 3.0 Consensus size: 79
33235794 AGCCCGGTTA
*
33235804 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTAACT-GCACAAATGCCTTC
33235867 GGATCTTAGTCCGGATT
63 GGATCTTAGTCCGGATT
33235884 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACT-CACAAATGCCTTCGGA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTGCACAAATGCCTTCGGA
33235948 TCTTAGTCCGGATT
66 TCTTAGTCCGGATT
* *
33235962 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-T-GCACAAATGCCTTCG
*
33236026 GA-CTTAGCCCGGA
64 GATCTTAGTCCGGA
33236039 CATCATTCGA
Statistics
Matches: 146, Mismatches: 4, Indels: 11
0.91 0.02 0.07
Matches are distributed among these distances:
78 75 0.51
79 14 0.10
80 50 0.34
81 7 0.05
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTGCACAAATGCCTTCGGA
TCTTAGTCCGGATT
Found at i:33242841 original size:39 final size:39
Alignment explanation
Indices: 33242757--33242911 Score: 265
Period size: 39 Copynumber: 3.9 Consensus size: 39
33242747 GTTATAGTAG
* * *
33242757 CTCGCATAAATGCCTTCGGGACTTAACCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
*
33242797 TTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
33242836 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
33242875 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
33242912 CCGAACATTC
Statistics
Matches: 110, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 93 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
Found at i:33247371 original size:6 final size:6
Alignment explanation
Indices: 33247360--33247387 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
33247350 CCCCCCACCT
33247360 ACCCCA ACCCCA ACCCCA ACCCCA ACCC
1 ACCCCA ACCCCA ACCCCA ACCCCA ACCC
33247388 TATCCCTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (6 bp):
ACCCCA
Found at i:33247460 original size:7 final size:7
Alignment explanation
Indices: 33247448--33247485 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
33247438 CTCCTTCCAC
33247448 TTTCTCA
1 TTTCTCA
33247455 TTTCTCA
1 TTTCTCA
33247462 TTTCTCA
1 TTTCTCA
33247469 TTTCTCA
1 TTTCTCA
33247476 TTTCTCA
1 TTTCTCA
33247483 TTT
1 TTT
33247486 ACTCCCCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.13, C:0.26, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTCTCA
Found at i:33250819 original size:21 final size:22
Alignment explanation
Indices: 33250778--33250828 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
33250768 TCCAATATAT
*
33250778 TTAAAA-ACATAAAAACAAATA
1 TTAAAACAAATAAAAACAAATA
*
33250799 TTAAAACAAATAAAAA-TAATA
1 TTAAAACAAATAAAAACAAATA
*
33250820 CTAAAACAA
1 TTAAAACAA
33250829 TTCTTAAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (22 bp):
TTAAAACAAATAAAAACAAATA
Found at i:33256289 original size:40 final size:40
Alignment explanation
Indices: 33256229--33256412 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
33256219 TATTCGAATG
*
33256229 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
33256269 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
33256309 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
33256349 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* *
33256389 ATATCCGAGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
33256413 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:33256369 original size:80 final size:79
Alignment explanation
Indices: 33256229--33256448 Score: 257
Period size: 80 Copynumber: 2.8 Consensus size: 79
33256219 TATTCGAATG
* * *
33256229 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAG-TCCCGAAGGC
* *
33256293 ATTTGTGCGAGTTG-CT
64 ATTTATGCGAG-TGACC
* *
33256309 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
33256374 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * * ** *
33256389 ATATCCGAGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAG
33256449 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.12
79 19 0.16
80 88 0.73
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCGAGTGACC
Found at i:33258286 original size:13 final size:13
Alignment explanation
Indices: 33258245--33258292 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
33258235 AGACCTCGCA
*
33258245 AAAACATAGCTTAT
1 AAAACAT-GCTTTT
33258259 AAAAC-TGTACTTTT
1 AAAACATG--CTTTT
33258273 AAAACATGCTTTT
1 AAAACATGCTTTT
33258286 AAAACAT
1 AAAACAT
33258293 AGACTCGCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 1 0.03
13 13 0.43
14 14 0.47
15 2 0.07
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (13 bp):
AAAACATGCTTTT
Found at i:33261963 original size:44 final size:45
Alignment explanation
Indices: 33261873--33262001 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
33261863 GACAGAACGA
*
33261873 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
33261919 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
33261963 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
33262002 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:33269346 original size:44 final size:45
Alignment explanation
Indices: 33269256--33269384 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
33269246 GACAGAACGA
*
33269256 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
33269302 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
33269346 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
33269385 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:33271424 original size:16 final size:16
Alignment explanation
Indices: 33271403--33271434 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33271393 ATGTTATTTC
*
33271403 AAAATTACAACAATAA
1 AAAATTAAAACAATAA
33271419 AAAATTAAAACAATAA
1 AAAATTAAAACAATAA
33271435 TGATATTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATTAAAACAATAA
Found at i:33272396 original size:17 final size:17
Alignment explanation
Indices: 33272366--33272419 Score: 67
Period size: 16 Copynumber: 3.2 Consensus size: 17
33272356 GTACTTTATG
*
33272366 TTAAT-TTTTTTATTTT
1 TTAATATTTTATATTTT
33272382 TTAATATTTTATA-TTT
1 TTAATATTTTATATTTT
*
33272398 TGAATATATTTATATTTT
1 TTAATAT-TTTATATTTT
33272416 TTAA
1 TTAA
33272420 AAATTTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 14 0.44
17 12 0.38
18 6 0.19
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (17 bp):
TTAATATTTTATATTTT
Found at i:33272416 original size:18 final size:17
Alignment explanation
Indices: 33272371--33272416 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
33272361 TTATGTTAAT
* *
33272371 TTTTTTATTTTTTAATA
1 TTTTATATTTTTGAATA
33272388 TTTTATA-TTTTGAATA
1 TTTTATATTTTTGAATA
33272404 TATTTATATTTTT
1 T-TTTATATTTTT
33272417 TAAAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.36
17 12 0.48
18 4 0.16
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTATATTTTTGAATA
Found at i:33272573 original size:65 final size:65
Alignment explanation
Indices: 33272464--33272592 Score: 231
Period size: 65 Copynumber: 2.0 Consensus size: 65
33272454 GTGTTATGTT
* *
33272464 AATATAAAATACACGTGAACTGTCATGCAAGTTGTCACGTCAACATCATAAAAAATTAGTATTTC
1 AATATAAAATACACGTGAACTGTCATGCAAATTGTCACGCCAACATCATAAAAAATTAGTATTTC
*
33272529 AATATAAAGTACACGTGAACTGTCATGCAAATTGTCACGCCAACATCATAAAAAATTAGTATTT
1 AATATAAAATACACGTGAACTGTCATGCAAATTGTCACGCCAACATCATAAAAAATTAGTATTT
33272593 TAGTTAGCAT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (65 bp):
AATATAAAATACACGTGAACTGTCATGCAAATTGTCACGCCAACATCATAAAAAATTAGTATTTC
Found at i:33275755 original size:33 final size:33
Alignment explanation
Indices: 33275717--33275782 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
33275707 ATTTAATGCA
33275717 AAGGTACATGCATAGACGACTTCAATGCATGGT
1 AAGGTACATGCATAGACGACTTCAATGCATGGT
* *
33275750 AAGGTACATGCATAGACGGCTTCAATGTATGGT
1 AAGGTACATGCATAGACGACTTCAATGCATGGT
33275783 GTGCTGATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (33 bp):
AAGGTACATGCATAGACGACTTCAATGCATGGT
Found at i:33277832 original size:23 final size:23
Alignment explanation
Indices: 33277786--33277851 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 23
33277776 CAACTCGTAT
*
33277786 GAGCTTACTGTTTTTAGCTCATTG
1 GAGCTTACCG-TTTTAGCTCATTG
* *
33277810 GAGCTTACCGTTTCAGCTTATTG
1 GAGCTTACCGTTTTAGCTCATTG
*
33277833 GAGCTAACCGTTTTAGCTC
1 GAGCTTACCGTTTTAGCTC
33277852 GTATGAGCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 27 0.75
24 9 0.25
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (23 bp):
GAGCTTACCGTTTTAGCTCATTG
Found at i:33277859 original size:23 final size:24
Alignment explanation
Indices: 33277779--33277862 Score: 79
Period size: 23 Copynumber: 3.6 Consensus size: 24
33277769 CTCACCACAA
*
33277779 CTCGTAT-GAGCTTACTGTTTTTAG
1 CTCGTATGGAGCTTACCG-TTTTAG
* *
33277803 CTCAT-TGGAGCTTACCGTTTCAG
1 CTCGTATGGAGCTTACCGTTTTAG
*
33277826 CT--TATTGGAGCTAACCGTTTTAG
1 CTCGTA-TGGAGCTTACCGTTTTAG
33277849 CTCGTAT-GAGCTTA
1 CTCGTATGGAGCTTA
33277863 TTGTTCAGCT
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
21 1 0.02
23 32 0.65
24 14 0.29
25 2 0.04
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.39
Consensus pattern (24 bp):
CTCGTATGGAGCTTACCGTTTTAG
Found at i:33277895 original size:23 final size:23
Alignment explanation
Indices: 33277856--33277914 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
33277846 TAGCTCGTAT
*
33277856 GAGCTTATTG-TTCAGCTCAATA
1 GAGCTTACTGATTCAGCTCAATA
33277878 GAGCTTACTGATTCAGCTCAATA
1 GAGCTTACTGATTCAGCTCAATA
33277901 GAGCTTACT-ATTCA
1 GAGCTTACTGATTCA
33277915 TCAGCTCAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 14 0.40
23 21 0.60
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (23 bp):
GAGCTTACTGATTCAGCTCAATA
Found at i:33277941 original size:26 final size:25
Alignment explanation
Indices: 33277867--33277941 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 25
33277857 AGCTTATTGT
*
33277867 TCAGCTCAATAGAGCTTACTGAT--
1 TCAGCTCAAGAGAGCTTACTGATCA
*
33277890 TCAGCTCAATAGAGCTTACT-ATTCA
1 TCAGCTCAAGAGAGCTTACTGA-TCA
*
33277915 TCAGCTCAGGAGGAGCTTACTGATCA
1 TCAGCTCAAGA-GAGCTTACTGATCA
33277941 T
1 T
33277942 GGATCGAAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
22 1 0.02
23 21 0.47
25 9 0.20
26 13 0.29
27 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
TCAGCTCAAGAGAGCTTACTGATCA
Found at i:33279375 original size:49 final size:49
Alignment explanation
Indices: 33279303--33279398 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
33279293 GATTGGAGGT
*
33279303 AAGTTCGTATGATGAAATAAGCATGTTGTTAATGTTATTGTTGTTTACC
1 AAGTTCGTATGATGAAATAAGCATGTTGTTAATGTTATTGTTATTTACC
33279352 AAGTTCGTATGATGAAATAAGCATGTTGTTAATGTTATTGTTATTTA
1 AAGTTCGTATGATGAAATAAGCATGTTGTTAATGTTATTGTTATTTA
33279399 TCGTTGAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.44
Consensus pattern (49 bp):
AAGTTCGTATGATGAAATAAGCATGTTGTTAATGTTATTGTTATTTACC
Found at i:33279763 original size:42 final size:43
Alignment explanation
Indices: 33279704--33279817 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 43
33279694 AATTAAGAAG
* * * ** *
33279704 TCCGAACTCATTGAGTGGTCTGGGTTTGTGATATATGTG-GCA
1 TCCGAGCTCATTGAGTGGTCCGAGTTCATGATAGATGTGAGCA
* *
33279746 TCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGTGAGCA
1 TCCGAGCTCATTGAGTGGTCCGAGTTCATGATAGATGTGAGCA
* **
33279789 TCCGAGCTCGTTGAGTGGTATGAGTTCAT
1 TCCGAGCTCATTGAGTGGTCCGAGTTCAT
33279818 AATGGATGCG
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 31 0.52
43 29 0.48
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.33
Consensus pattern (43 bp):
TCCGAGCTCATTGAGTGGTCCGAGTTCATGATAGATGTGAGCA
Found at i:33279804 original size:43 final size:42
Alignment explanation
Indices: 33279738--33279825 Score: 131
Period size: 43 Copynumber: 2.1 Consensus size: 42
33279728 TTTGTGATAT
* *
33279738 ATGTGGCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGG
1 ATGTGGCATCCGAGCTCATTGAGTGGTACGAGTTCATAATGG
* *
33279780 ATGTGAGCATCCGAGCTCGTTGAGTGGTATGAGTTCATAATGG
1 ATGTG-GCATCCGAGCTCATTGAGTGGTACGAGTTCATAATGG
33279823 ATG
1 ATG
33279826 CGATACATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 5 0.12
43 36 0.88
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.31
Consensus pattern (42 bp):
ATGTGGCATCCGAGCTCATTGAGTGGTACGAGTTCATAATGG
Found at i:33281365 original size:46 final size:46
Alignment explanation
Indices: 33281315--33281490 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
33281305 TGGTTGAGCA
33281315 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33281361 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
33281406 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33281454 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33281491 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33281471 original size:93 final size:93
Alignment explanation
Indices: 33281312--33281483 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
33281302 GGATGGTTGA
* *
33281312 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33281377 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
33281405 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33281470 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
33281484 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33288938 original size:46 final size:46
Alignment explanation
Indices: 33288888--33289063 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
33288878 TGGTTGAGCA
33288888 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33288934 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
33288979 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33289027 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33289064 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33289044 original size:93 final size:93
Alignment explanation
Indices: 33288885--33289056 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
33288875 GGATGGTTGA
* *
33288885 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33288950 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
33288978 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33289043 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
33289057 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33294114 original size:15 final size:15
Alignment explanation
Indices: 33294094--33294161 Score: 102
Period size: 15 Copynumber: 4.5 Consensus size: 15
33294084 AGTATGATAT
33294094 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
33294109 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
33294124 T-TAATCTTGGATTTC
1 TGT-ATCTTGGATTTC
* *
33294139 TTTATCTTGGACTTC
1 TGTATCTTGGATTTC
33294154 TGTATCTT
1 TGTATCTT
33294162 TGTTTTCATG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
14 1 0.02
15 47 0.96
16 1 0.02
ACGTcount: A:0.15, C:0.15, G:0.16, T:0.54
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:33300466 original size:92 final size:92
Alignment explanation
Indices: 33300355--33300525 Score: 306
Period size: 92 Copynumber: 1.9 Consensus size: 92
33300345 CGCCCATAAG
* *
33300355 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
33300420 ACGAGCTCGGATGCCTAGTTACATTCA
66 ACGAGCTCGGATGCCTAGTTACATTCA
*
33300447 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
33300512 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
33300526 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTCA
Found at i:33300522 original size:46 final size:46
Alignment explanation
Indices: 33300348--33300522 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
33300338 TGTAACCCGC
* *
33300348 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
33300394 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* * *
33300440 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
33300486 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
33300523 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 97 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:33300541 original size:46 final size:46
Alignment explanation
Indices: 33300356--33300541 Score: 136
Period size: 46 Copynumber: 4.0 Consensus size: 46
33300346 GCCCATAAGC
** * *
33300356 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T-AGT
* *
33300402 GAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATTC-A-C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATCCTAGT
* * * * *
33300448 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCTAGT
*
33300494 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
33300540 GA
1 GA
33300542 CATGTCACTT
Statistics
Matches: 113, Mismatches: 13, Indels: 28
0.73 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 92 0.81
47 1 0.01
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
Found at i:33304818 original size:9 final size:9
Alignment explanation
Indices: 33304804--33304828 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
33304794 AGGCAATGCC
33304804 TCTGATTTA
1 TCTGATTTA
33304813 TCTGATTTA
1 TCTGATTTA
33304822 TCTGATT
1 TCTGATT
33304829 CAACCCGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.56
Consensus pattern (9 bp):
TCTGATTTA
Found at i:33307977 original size:46 final size:46
Alignment explanation
Indices: 33307910--33308130 Score: 297
Period size: 46 Copynumber: 4.8 Consensus size: 46
33307900 TGTAACCCGC
*
33307910 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
33307956 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
33308002 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
33308052 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
33308095 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
33308131 ATGCTCAACC
Statistics
Matches: 156, Mismatches: 10, Indels: 18
0.85 0.05 0.10
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
44 2 0.01
45 2 0.01
46 109 0.70
47 27 0.17
48 3 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:33308099 original size:93 final size:95
Alignment explanation
Indices: 33307910--33308134 Score: 311
Period size: 93 Copynumber: 2.4 Consensus size: 95
33307900 TGTAACCCGC
* * *
33307910 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGTGAACTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCGTTCACATCCATAAGCGAACTCGG
* *
33307972 ACTCAACTCAACGAGCTCGGGCGTTCGCAT
66 ACTCAACTCAACGAGCTCGGACATTCGCAT
*
33308002 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC--GTTCACATCCATAAGCGAACTC
*
33308063 GGACTCAACTCAACGAGTTCGGACATTCGCAT
64 GGACTCAACTCAACGAGCTCGGACATTCGCAT
*
33308095 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
33308135 TCAACCATCC
Statistics
Matches: 120, Mismatches: 8, Indels: 9
0.88 0.06 0.07
Matches are distributed among these distances:
92 35 0.29
93 74 0.62
94 3 0.03
95 2 0.02
96 3 0.03
97 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (95 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCGTTCACATCCATAAGCGAACTCGG
ACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:33316117 original size:23 final size:23
Alignment explanation
Indices: 33316041--33316156 Score: 92
Period size: 23 Copynumber: 4.9 Consensus size: 23
33316031 GACTCACCAT
* *
33316041 AGCTCGTATGAGCTTATTGATATATC
1 AGCTCATATGAGCTTACTG-T-T-TC
* *
33316067 AGCTCGTAAGAGCTTACTGTTTTC
1 AGCTCATATGAGCTTACTG-TTTC
* * *
33316091 AGCTTATTTGAGCTTATTGTTTC
1 AGCTCATATGAGCTTACTGTTTC
*
33316114 AGCTCGTATGAGCTTACTG-TTC
1 AGCTCATATGAGCTTACTGTTTC
*
33316136 AGCTCA-ATAAAGCTTACTGTT
1 AGCTCATAT-GAGCTTACTGTT
33316157 CATCATCTCA
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
21 2 0.03
22 17 0.23
23 20 0.27
24 16 0.22
25 1 0.01
26 18 0.24
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (23 bp):
AGCTCATATGAGCTTACTGTTTC
Found at i:33316139 original size:22 final size:23
Alignment explanation
Indices: 33316041--33316140 Score: 103
Period size: 23 Copynumber: 4.2 Consensus size: 23
33316031 GACTCACCAT
*
33316041 AGCTCGTATGAGCTTATTGATATATC
1 AGCTCGTATGAGCTTACTG-T-T-TC
*
33316067 AGCTCGTAAGAGCTTACTGTTTTC
1 AGCTCGTATGAGCTTACTG-TTTC
** * *
33316091 AGCTTATTTGAGCTTATTGTTTC
1 AGCTCGTATGAGCTTACTGTTTC
33316114 AGCTCGTATGAGCTTACTG-TTC
1 AGCTCGTATGAGCTTACTGTTTC
33316136 AGCTC
1 AGCTC
33316141 AATAAAGCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
22 8 0.13
23 19 0.31
24 16 0.26
25 1 0.02
26 18 0.29
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (23 bp):
AGCTCGTATGAGCTTACTGTTTC
Found at i:33320416 original size:48 final size:48
Alignment explanation
Indices: 33320362--33320707 Score: 255
Period size: 48 Copynumber: 7.5 Consensus size: 48
33320352 ATGAGATCCC
* *
33320362 GTGTAAGACCTTGTCTAGGACATGACATCTACGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCTACGTTGATATGTGAGCCA
* *
33320410 GTGTAAGACCATGTCTAGGACATGGCAT-TGGCTTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCT-ACGTTGATATGTGAGCCA
* *
33320458 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCC-
1 GTGTAAGACCATGTCTAGGACATGGCATCTACGTTGATATGTGAGCCA
* *** *
33320505 ------G---ATGTCTGGGACATGGCATCGGTGTTGATATATGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCTACGTTGATATGTGAGCCA
* * * * * *
33320544 ATGTAAGGCCATGTTTGGGACATGGCATC-AGCATTGATATGTGAGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCTA-CGTTGATATGTGAGCCA
* * ** * * *
33320592 GTGTAAGACCATGTTTGGGACATGGCAT-TGGTGTTGATATATGTGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCT-ACGTTGATATGTGAGCCA
* * * *
33320640 GTGTAAGACCAAGTCTGGGACGTGGCA--T-C---GATATGTGGATCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCTACGTTGATATGT-GAGCCA
*
33320683 -TGTAAGACCATGTCTGGGACATGGC
1 GTGTAAGACCATGTCTAGGACATGGC
33320708 TTAAATTATG
Statistics
Matches: 248, Mismatches: 34, Indels: 38
0.77 0.11 0.12
Matches are distributed among these distances:
38 34 0.14
41 1 0.00
42 29 0.12
43 3 0.01
45 1 0.00
47 2 0.01
48 178 0.72
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTAGGACATGGCATCTACGTTGATATGTGAGCCA
Found at i:33320519 original size:38 final size:38
Alignment explanation
Indices: 33320468--33320547 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
33320458 GTGTAAGACC
* *
33320468 ATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCG
1 ATGTCTGGGACATGGCATCGACGTTGATATATGAGCCA
**
33320506 ATGTCTGGGACATGGCATCGGTGTTGATATATGAGCCA
1 ATGTCTGGGACATGGCATCGACGTTGATATATGAGCCA
33320544 ATGT
1 ATGT
33320548 AAGGCCATGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.29
Consensus pattern (38 bp):
ATGTCTGGGACATGGCATCGACGTTGATATATGAGCCA
Found at i:33320565 original size:86 final size:86
Alignment explanation
Indices: 33320420--33320589 Score: 245
Period size: 86 Copynumber: 2.0 Consensus size: 86
33320410 GTGTAAGACC
* * *
33320420 ATGTCTAGGACATGGCATTGGCTTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCA
1 ATGTCTAGGACATGGCATCGGCTTTGATATATGAGCCAATGTAAGACCATGTCTGGGACATGGCA
*
33320485 TC-GACGTTGATATGTGAGCCG
66 TCAG-CATTGATATGTGAGCCG
* * *
33320506 ATGTCTGGGACATGGCATCGG-TGTTGATATATGAGCCAATGTAAGGCCATGTTTGGGACATGGC
1 ATGTCTAGGACATGGCATCGGCT-TTGATATATGAGCCAATGTAAGACCATGTCTGGGACATGGC
33320570 ATCAGCATTGATATGTGAGC
65 ATCAGCATTGATATGTGAGC
33320590 TAGTGTAAGA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
85 1 0.01
86 73 0.97
87 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (86 bp):
ATGTCTAGGACATGGCATCGGCTTTGATATATGAGCCAATGTAAGACCATGTCTGGGACATGGCA
TCAGCATTGATATGTGAGCCG
Found at i:33322005 original size:48 final size:48
Alignment explanation
Indices: 33321926--33322284 Score: 504
Period size: 48 Copynumber: 7.5 Consensus size: 48
33321916 TCCCATGTTC
* * **
33321926 GACCATGTCTAGGACATGGCATCAGTATTGATATGTGAGCCAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAA
* * * *
33321974 GACCATGTTTGAGACATAGCATTGGCGTTGATATGTGAGCCAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAA
*
33322022 GACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCCAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAA
* * *
33322070 GACCATGTCTTGGACATGGCATCGGTGTTGATATATGAGCCAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAA
* *
33322118 GACCATGTATGGGACATGGCATCGGCATTGATATGTGAGCCAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAA
* * * *
33322166 GACTATGTTTGGGACATGGCATTGGCATTGATATGTGAGCCAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAA
** * *
33322214 GACCATGTCTGGGACATGGCATCGATGTTTATATGTGTA-CTAGTGTAA
1 GACCATGTCTGGGACATGGCATCGGCGTTGATATGTG-AGCCAGTGTAA
33322262 GACCATGTCTGGGACATGGCATC
1 GACCATGTCTGGGACATGGCATC
33322285 AGCACTGACA
Statistics
Matches: 279, Mismatches: 31, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
48 278 1.00
49 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (48 bp):
GACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAA
Found at i:33322311 original size:96 final size:96
Alignment explanation
Indices: 33321926--33322335 Score: 479
Period size: 96 Copynumber: 4.3 Consensus size: 96
33321916 TCCCATGTTC
* * * *
33321926 GACCATGTCTAGGACATGGCATC-AGTATTGATATGTGAGCCAGTGTAAGACCATGTTTGAGACA
1 GACCATGTCTGGGACATGGCATCGA-TGTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACA
* * * *
33321990 TAGCATTGGCGTTGATATGTGAGCCAGTGTAA
65 TGGCATCGGCATTGATATGAGAGCCAGTGTAA
* *
33322022 GACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCCAGTGTAAGACCATGTCTTGGACAT
1 GACCATGTCTGGGACATGGCATCGATGTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACAT
**
33322087 GGCATCGGTGTTGATAT-ATGAGCCAGTGTAA
66 GGCATCGGCATTGATATGA-GAGCCAGTGTAA
* *** * *
33322118 GACCATGTATGGGACATGGCATCGGCATTGATATGTGAGCCAGTGTAAGACTATGTTTGGGACAT
1 GACCATGTCTGGGACATGGCATCGATGTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACAT
* *
33322183 GGCATTGGCATTGATATGTGAGCCAGTGTAA
66 GGCATCGGCATTGATATGAGAGCCAGTGTAA
* *
33322214 GACCATGTCTGGGACATGGCATCGATGTTTATATGTGTA-CTAGTGTAAGACCATGTCTGGGACA
1 GACCATGTCTGGGACATGGCATCGATGTTGATATGTG-AGCCAGTGTAAGACCATGTCTGGGACA
* * * *
33322278 TGGCATCAGCACTGACATGAGA-CTTC-GTATAA
65 TGGCATCGGCATTGATATGAGAGC--CAGTGTAA
* * *
33322310 GACCATATCCGGGATATGGCATCGAT
1 GACCATGTCTGGGACATGGCATCGAT
33322336 ATGTGGATCT
Statistics
Matches: 271, Mismatches: 37, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
95 1 0.00
96 268 0.99
97 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (96 bp):
GACCATGTCTGGGACATGGCATCGATGTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACAT
GGCATCGGCATTGATATGAGAGCCAGTGTAA
Found at i:33322311 original size:144 final size:144
Alignment explanation
Indices: 33321926--33322333 Score: 464
Period size: 144 Copynumber: 2.8 Consensus size: 144
33321916 TCCCATGTTC
* * * * *
33321926 GACCATGTCTAGGACATGGCATC-AGTATTGATATGTGAGCCAGTGTAAGACCATGTTTGAGACA
1 GACCATGTCTGGGACATGGCATCGA-TGTTGATATATGAGCCAGTGTAAGACCATGTATGGGACA
* ** ** * * * **
33321990 TAGCATTGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATA
65 TGGCATCAGCACTGACATGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGATA
33322055 TGTGAGCCAGTGTAA
130 TGTGAGCCAGTGTAA
* *
33322070 GACCATGTCTTGGACATGGCATCGGTGTTGATATATGAGCCAGTGTAAGACCATGTATGGGACAT
1 GACCATGTCTGGGACATGGCATCGATGTTGATATATGAGCCAGTGTAAGACCATGTATGGGACAT
* * * * * * * *
33322135 GGCATCGGCATTGATATGTGAGCCAGTGTAAGACTATGTTTGGGACATGGCATTGGCATTGATAT
66 GGCATCAGCACTGACATGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGATAT
33322200 GTGAGCCAGTGTAA
131 GTGAGCCAGTGTAA
* * * *
33322214 GACCATGTCTGGGACATGGCATCGATGTTTATATGTGTA-CTAGTGTAAGACCATGTCTGGGACA
1 GACCATGTCTGGGACATGGCATCGATGTTGATATATG-AGCCAGTGTAAGACCATGTATGGGACA
* * *
33322278 TGGCATCAGCACTGACATGAGA-CTTC-GTATAAGACCATATCCGGGATATGGCATCG
65 TGGCATCAGCACTGACATGAGAGC--CAGTATAAGACCATGTCTGGGACATGGCATCG
33322334 ATATGTGGAT
Statistics
Matches: 229, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
143 1 0.00
144 226 0.99
145 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (144 bp):
GACCATGTCTGGGACATGGCATCGATGTTGATATATGAGCCAGTGTAAGACCATGTATGGGACAT
GGCATCAGCACTGACATGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGATAT
GTGAGCCAGTGTAA
Found at i:33326416 original size:10 final size:9
Alignment explanation
Indices: 33326382--33326413 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
33326372 AACATGAGAG
33326382 CTTTTTTTT
1 CTTTTTTTT
33326391 CTTTTTTTT
1 CTTTTTTTT
33326400 CTTTCTTTTT
1 CTTT-TTTTT
33326410 CTTT
1 CTTT
33326414 CTTCTATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:33326418 original size:13 final size:13
Alignment explanation
Indices: 33326383--33326416 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
33326373 ACATGAGAGC
33326383 TTTTT-TTTCTTT
1 TTTTTCTTTCTTT
33326395 TTTTTCTTTCTTT
1 TTTTTCTTTCTTT
33326408 TTCTTTCTT
1 TT-TTTCTT
33326417 CTATTCAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 5 0.25
13 9 0.45
14 6 0.30
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTCTTTCTTT
Found at i:33330955 original size:29 final size:28
Alignment explanation
Indices: 33330917--33331019 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 28
33330907 GTGACGAGAT
*
33330917 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCAAGCTT-AAATATA
*
33330946 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCAAGCTTAAA-TATA
* * *
33330975 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCAAGCTTAAAT-ATA
33331004 TGGCACTAAGTGTGCA
1 TGGCACTAAGTGTGCA
33331020 TGATCGATTA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
28 4 0.06
29 62 0.94
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCAAGCTTAAATATA
Found at i:33336395 original size:40 final size:40
Alignment explanation
Indices: 33336358--33336538 Score: 219
Period size: 40 Copynumber: 4.5 Consensus size: 40
33336348 GCTACTCGTT
*
33336358 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
33336398 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
33336438 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
33336477 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
33336518 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
33336539 GGACATCATT
Statistics
Matches: 122, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 75 0.61
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:33336469 original size:79 final size:80
Alignment explanation
Indices: 33336360--33336538 Score: 231
Period size: 79 Copynumber: 2.2 Consensus size: 80
33336350 TACTCGTTCA
* *
33336360 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
33336424 TTTAGTAAC-TCGCACC
65 TATAGTAACTTAGCA-C
**
33336440 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
33336503 TATAGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
33336519 AAAGCCTTCGGGACTTAGCC
1 AATGCCTTCGGGACTTAGCC
33336539 GGACATCATT
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 4 0.05
79 60 0.69
80 23 0.26
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:33340469 original size:6 final size:6
Alignment explanation
Indices: 33340458--33340507 Score: 55
Period size: 6 Copynumber: 7.7 Consensus size: 6
33340448 TAATTATTAG
*
33340458 TTTTAT TTTTAT TGTTAT TTTTATT ATTTTGCAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTA-T -TTTT--AT TTTTAT TTTTAT TTTT
33340508 GGGAAGTGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
6 27 0.71
7 1 0.03
8 8 0.21
9 1 0.03
10 1 0.03
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:33341529 original size:30 final size:30
Alignment explanation
Indices: 33341493--33341553 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
33341483 ACTTTAGAGA
33341493 GGGTAGTTAAGTCATCGTAACTGTGACTAT
1 GGGTAGTTAAGTCATCGTAACTGTGACTAT
33341523 GGGTAGTTAAGTCATCGTAACTGTGACTAT
1 GGGTAGTTAAGTCATCGTAACTGTGACTAT
33341553 G
1 G
33341554 TGCTCTGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (30 bp):
GGGTAGTTAAGTCATCGTAACTGTGACTAT
Found at i:33349196 original size:40 final size:39
Alignment explanation
Indices: 33349152--33349302 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 39
33349142 GGTTATAGCG
* * *
33349152 ACTTGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTTGCAC-AAAGCCTTCGGGACTTAGCCCGGATTTAGTA
*
33349192 ACTTGCACAAAGCCTTCGGGA-TTAGCCCGGATTTATTA
1 ACTTGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * * *
33349230 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTTGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTA
33349270 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 ACTT-GCACAAAGCCTTCGGGACTTAGCCCGGA
33349303 CATCATTCGA
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
38 24 0.26
39 20 0.22
40 40 0.44
41 7 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTTGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:33352852 original size:17 final size:18
Alignment explanation
Indices: 33352830--33352863 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33352820 TTTTGGGCTT
33352830 TGTGGG-CCACACGGGCG
1 TGTGGGTCCACACGGGCG
*
33352847 TGTGGGTCCACATGGGC
1 TGTGGGTCCACACGGGC
33352864 CGCATTATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.26, G:0.44, T:0.18
Consensus pattern (18 bp):
TGTGGGTCCACACGGGCG
Found at i:33358135 original size:34 final size:32
Alignment explanation
Indices: 33358065--33358154 Score: 99
Period size: 34 Copynumber: 2.7 Consensus size: 32
33358055 GATTCTATTG
*
33358065 TGGGCTTAGGCCCCCTGATACTGTTACTGTAA
1 TGGGCTTAGGCCCACTGATACTGTTACTGTAA
* * *
33358097 TGGGCTTAGGCCCAGACTGCTACTGTTATTGTAT
1 TGGGCTTAGGCCC--ACTGATACTGTTACTGTAA
* *
33358131 TGGGCTAAGGCCTAACTGATACTG
1 TGGGCTTAGGCC-CACTGATACTG
33358155 GACTATTTCT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
32 13 0.27
33 9 0.19
34 26 0.54
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (32 bp):
TGGGCTTAGGCCCACTGATACTGTTACTGTAA
Found at i:33360918 original size:27 final size:27
Alignment explanation
Indices: 33360878--33360997 Score: 143
Period size: 27 Copynumber: 4.4 Consensus size: 27
33360868 ACATACATCA
* * *
33360878 CATAGGGGTAAAACAATCATCTTACCAT
1 CATAAGGGCAAAACAATCATTTTACC-T
* **
33360906 -AAAAGGGCAAAACGGTCATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCT
* *
33360932 CATAAGGGCAAAACAGTCATTTTACCA
1 CATAAGGGCAAAACAATCATTTTACCT
*
33360959 CATAAGGGCAAAAAAATCATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCT
33360986 CATAAGGGCAAA
1 CATAAGGGCAAA
33360998 GTAGTTATTT
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 78 0.99
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.23
Consensus pattern (27 bp):
CATAAGGGCAAAACAATCATTTTACCT
Found at i:33360969 original size:54 final size:54
Alignment explanation
Indices: 33360878--33360997 Score: 159
Period size: 54 Copynumber: 2.2 Consensus size: 54
33360868 ACATACATCA
* * * ***
33360878 CATAGGGGTAAAACAATCATCTTACCATAAAAGGGCAAAACGGTCATTTTACCT
1 CATAAGGGCAAAACAATCATCTTACCACAAAAGGGCAAAAAAATCATTTTACCT
* * *
33360932 CATAAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAAAAATCATTTTACCT
1 CATAAGGGCAAAACAATCATCTTACCACAAAAGGGCAAAAAAATCATTTTACCT
33360986 CATAAGGGCAAA
1 CATAAGGGCAAA
33360998 GTAGTTATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.23
Consensus pattern (54 bp):
CATAAGGGCAAAACAATCATCTTACCACAAAAGGGCAAAAAAATCATTTTACCT
Found at i:33367929 original size:27 final size:27
Alignment explanation
Indices: 33367899--33368096 Score: 283
Period size: 27 Copynumber: 7.4 Consensus size: 27
33367889 TGGCGTAATC
* ** *
33367899 GTCATTTTACCATACAGTAGAATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
33367926 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
33367953 ATCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
33367980 GTCATTTTACCCTACA-GGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
**
33368006 GTCATTTTACTTTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
33368033 GTCATTTTACCCTATAGGGGCATAACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
33368060 GTCA-TTTATCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
33368086 GTCATTTTACC
1 GTCATTTTACC
33368097 TATTTTGGGG
Statistics
Matches: 154, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 48 0.31
27 106 0.69
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:33368023 original size:53 final size:54
Alignment explanation
Indices: 33367920--33368096 Score: 270
Period size: 53 Copynumber: 3.3 Consensus size: 54
33367910 ATACAGTAGA
* *
33367920 ATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACTCTACAGGGGC
*
33367974 ATTACGGTCATTTTACCCTACA-GGGCATTACGGTCATTTTACTTTACAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACTCTACAGGGGC
* * *
33368027 ATTACGGTCATTTTACCCTATAGGGGCATAACGGTCA-TTTA-TCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACT-CTACAGGGGC
33368080 ATTACGGTCATTTTACC
1 ATTACGGTCATTTTACC
33368097 TATTTTGGGG
Statistics
Matches: 114, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 78 0.68
54 35 0.31
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (54 bp):
ATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACTCTACAGGGGC
Found at i:33368038 original size:80 final size:80
Alignment explanation
Indices: 33367899--33368096 Score: 281
Period size: 80 Copynumber: 2.5 Consensus size: 80
33367889 TGGCGTAATC
* * *
33367899 GTCATTTTACCATACAGTAGAATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACC
1 GTCATTTTACCCTACAG-GGCATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACC
*
33367964 CTACAGGGGCATTACG
65 CTACAGGGGCATAACG
** *
33367980 GTCATTTTACCCTACAGGGCATTACGGTCATTTTACTTTACAGGGGCATTACGGTCATTTTACCC
1 GTCATTTTACCCTACAGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCC
*
33368045 TATAGGGGCATAACG
66 TACAGGGGCATAACG
* *
33368060 GTCA-TTTATCCTATAGGGGCATTACGGTCATTTTACC
1 GTCATTTTACCCTACA-GGGCATTACGGTCATTTTACC
33368097 TATTTTGGGG
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 9 0.09
80 80 0.76
81 16 0.15
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (80 bp):
GTCATTTTACCCTACAGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGATCATTTTACCC
TACAGGGGCATAACG
Found at i:33372419 original size:29 final size:29
Alignment explanation
Indices: 33372329--33372488 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
33372319 ACTCGATTTC
* * **
33372329 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
33372358 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
33372386 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
33372416 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
33372445 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
33372474 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
33372489 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:33380483 original size:29 final size:29
Alignment explanation
Indices: 33380393--33380552 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
33380383 ACTCGATTTC
* * **
33380393 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
33380422 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
33380450 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
33380480 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
33380509 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
33380538 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
33380553 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:33393324 original size:14 final size:14
Alignment explanation
Indices: 33393305--33393335 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
33393295 TAGTAATTGT
33393305 TTTAAAAACTCGTC
1 TTTAAAAACTCGTC
33393319 TTT-AAAACTCGTC
1 TTTAAAAACTCGTC
33393332 TTTA
1 TTTA
33393336 CTTAGACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.81
14 3 0.19
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (14 bp):
TTTAAAAACTCGTC
Found at i:33395053 original size:47 final size:47
Alignment explanation
Indices: 33394997--33395094 Score: 178
Period size: 47 Copynumber: 2.1 Consensus size: 47
33394987 TAAGTTGAAT
* *
33394997 TTAAGCTTGTTAAATTTGCCCTTAATATTTTCAGATAAGTTACTTAG
1 TTAAGCTTGTTAAATCTGCCCTTAATATTTCCAGATAAGTTACTTAG
33395044 TTAAGCTTGTTAAATCTGCCCTTAATATTTCCAGATAAGTTACTTAG
1 TTAAGCTTGTTAAATCTGCCCTTAATATTTCCAGATAAGTTACTTAG
33395091 TTAA
1 TTAA
33395095 AGAAAATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (47 bp):
TTAAGCTTGTTAAATCTGCCCTTAATATTTCCAGATAAGTTACTTAG
Found at i:33395975 original size:45 final size:45
Alignment explanation
Indices: 33395903--33396119 Score: 309
Period size: 45 Copynumber: 4.9 Consensus size: 45
33395893 CGCACAGTAT
33395903 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
33395947 TATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
33395992 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGGTAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
33396037 TATTTGGGCCTGTTGAGCCTAGCAGGCTATAATGCCAGTGAAATGA-
1 TATTCGGGCCT-TTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* *
33396083 TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
33396120 ATGAATTCAG
Statistics
Matches: 157, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
42 10 0.06
43 15 0.10
44 9 0.06
45 91 0.58
46 31 0.20
47 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:33397446 original size:63 final size:63
Alignment explanation
Indices: 33397337--33397459 Score: 201
Period size: 63 Copynumber: 2.0 Consensus size: 63
33397327 GGCAATAGTA
* * * *
33397337 GTTTTTCGGAGGGTGCTAGTAGTGGTACGAGCGTTCCGTTTTATGAGCACTATAAGAAGCATC
1 GTTTTTCGGAGGGTGCCAGTAGTGGTACGAGCATTCAGTTTGATGAGCACTATAAGAAGCATC
*
33397400 GTTTTTCGGAGGGTGCCAGTAGTGGTACGAGCATTCAGTTTGATGAGCACTGTAAGAAGC
1 GTTTTTCGGAGGGTGCCAGTAGTGGTACGAGCATTCAGTTTGATGAGCACTATAAGAAGC
33397460 GTCATCAGGC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (63 bp):
GTTTTTCGGAGGGTGCCAGTAGTGGTACGAGCATTCAGTTTGATGAGCACTATAAGAAGCATC
Found at i:33398041 original size:6 final size:6
Alignment explanation
Indices: 33398030--33398073 Score: 52
Period size: 6 Copynumber: 6.7 Consensus size: 6
33398020 TAATTATTAG
33398030 TTTTAT TTTTAT TTTTATT ATTTTGGAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTA-T -TTTT--AT TTTTAT TTTTAT TTTT
33398074 GGGAAGTGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 23 0.68
7 1 0.03
8 8 0.24
9 1 0.03
10 1 0.03
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:33404633 original size:48 final size:48
Alignment explanation
Indices: 33404564--33405374 Score: 1274
Period size: 48 Copynumber: 17.0 Consensus size: 48
33404554 AGATAAATAT
*
33404564 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
33404612 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
33404660 ATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* ***
33404708 ATATGTACAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33404756 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33404804 ATATGTATGAGA-ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33404851 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33404899 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33404947 ATATATCTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
33404995 ATATATGTGTGATATGTATATGTGGTAAAG-CGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
33405042 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33405090 ATATATGTGTGATATGTATATGTGGTAAAG-CGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33405137 ATATGTATGAGA-ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33405184 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33405232 ATATGTATGAT-ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATG-TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33405280 ATATATGTGTGATATGTATATGTGGTAAAGCCG-ATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
33405327 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
33405375 TGTTGTAACA
Statistics
Matches: 709, Mismatches: 47, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
46 17 0.02
47 183 0.26
48 508 0.72
49 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:33404889 original size:191 final size:192
Alignment explanation
Indices: 33404564--33405374 Score: 1301
Period size: 191 Copynumber: 4.2 Consensus size: 192
33404554 AGATAAATAT
* *
33404564 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
* * *
33404629 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATGTATATGTGGTAAAGCCGA
* * ** *
33404694 ATGGCTAATGTGAAATATGTACAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
131 ATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * * * *
33404756 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGA-ATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
*
33404820 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATGTATATGTGGTAAAGCCGA
* *
33404885 ATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
131 ATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
33404947 ATATATCTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
33405012 ATATGTGGTAAAG-CGAATGGCTAATGTGAAATATATATGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATGTATATGTGGTAAAGCCGA
* * *
33405076 ATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAG-CGAATGGCGAATGTGAA
131 ATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
*
33405137 ATATGTATGAGA-ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
* *
33405201 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAT-ATATGTATATGTGGTAAAGCCG
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG-TGATATGTATATGTGGTAAAGCCG
* *
33405265 AATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG-ATGGCGAATGTGAA
130 AATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
33405327 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
33405375 TGTTGTAACA
Statistics
Matches: 585, Mismatches: 29, Indels: 11
0.94 0.05 0.02
Matches are distributed among these distances:
189 65 0.11
190 142 0.24
191 305 0.52
192 73 0.12
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (192 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATGTATATGTGGTAAAGCCGA
ATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
Found at i:33404996 original size:239 final size:240
Alignment explanation
Indices: 33404564--33405374 Score: 1375
Period size: 239 Copynumber: 3.4 Consensus size: 240
33404554 AGATAAATAT
*
33404564 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
* *
33404629 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
* *
33404694 ATGGCTAATGTGAAATATGTAC-AAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
131 ATGGCTAATGTGAAATATAT-CTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
33404758 ATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
195 ATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
33404804 ATATGTATGAGA-ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
33404868 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
33404933 ATGGCTAATGTGAAATATATCTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
131 ATGGCTAATGTGAAATATATCTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
33404998 TATGTGTGATATGTATATGTGGTAAAG-CGAATGGCTAATGTGAA
196 TATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
33405042 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
33405107 ATATGTGGTAAAG-CGAATGGCGAATGTGAAATATGTATGAGA-ATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
* * *
33405170 ATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATA
131 ATGGCTAATGTGAAATATATCTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* *
33405235 TGTATGAT-ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
196 TATGTG-TGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* * * * * *
33405280 ATATATGTGTGATATGTATATGTGGTAAAGCCG-ATGGCGAATGTGAAATATGTATGAGATATGA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
*
33405344 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAA
33405375 TGTTGTAACA
Statistics
Matches: 543, Mismatches: 23, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
237 145 0.27
238 121 0.22
239 268 0.49
240 9 0.02
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (240 bp):
ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATATCTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
TATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
Found at i:33405469 original size:37 final size:37
Alignment explanation
Indices: 33405419--33405526 Score: 153
Period size: 37 Copynumber: 2.9 Consensus size: 37
33405409 GGAAATATAT
*
33405419 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
33405456 TCCGGGTAAGACCCGATGACTACGTATGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
33405493 TCCAGGTAAGACTCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
33405527 TCGTCTGAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:33406824 original size:40 final size:40
Alignment explanation
Indices: 33406758--33407125 Score: 529
Period size: 40 Copynumber: 9.2 Consensus size: 40
33406748 GAGAATTGAG
* * * * *
33406758 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
33406798 AGTGATGTATCCGGACAAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
33406838 AGTGATGTATCCGGTCTAAGTTTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
33406878 AGTGATGTATCCGGTCTAAGTTTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
33406918 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
33406958 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCCTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
33406998 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
33407038 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
33407078 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
33407118 GGTGATGT
1 AGTGATGT
33407126 GTATTCGGGC
Statistics
Matches: 303, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 303 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:33409377 original size:2 final size:2
Alignment explanation
Indices: 33409370--33409395 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
33409360 TTGTTTGATG
33409370 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
33409396 TCGGCAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33410681 original size:48 final size:48
Alignment explanation
Indices: 33410612--33410947 Score: 489
Period size: 48 Copynumber: 7.0 Consensus size: 48
33410602 AGATAAATAT
* * *
33410612 ATATATGTGTGATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
33410660 ATATATATATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
33410708 ATATGTATGA-GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATAT-ATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
33410756 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33410804 ATATGTATGA-GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATAT-ATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
33410852 ATATATGTGTGATATGTATATGTGGTAAAGCCGAGTGGCGAATGTGAA
1 ATATATATATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
33410900 ATATGTATGA-GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATAT-ATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
33410948 TGTTGTAACA
Statistics
Matches: 262, Mismatches: 21, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
48 261 1.00
49 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATATATATGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:33410776 original size:96 final size:96
Alignment explanation
Indices: 33410622--33410947 Score: 589
Period size: 96 Copynumber: 3.4 Consensus size: 96
33410612 ATATATGTGT
* * *
33410622 GATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATATATATGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
*
33410687 AAGCCGAATGGCTAATGTGAAATATGTATGA
66 AAGCCGAATGGCGAATGTGAAATATGTATGA
33410718 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
33410783 AAGCCGAATGGCGAATGTGAAATATGTATGA
66 AAGCCGAATGGCGAATGTGAAATATGTATGA
*
33410814 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
*
33410879 AAGCCGAGTGGCGAATGTGAAATATGTATGA
66 AAGCCGAATGGCGAATGTGAAATATGTATGA
*
33410910 GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
33410948 TGTTGTAACA
Statistics
Matches: 222, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 222 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.30
Consensus pattern (96 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
AAGCCGAATGGCGAATGTGAAATATGTATGA
Found at i:33410793 original size:144 final size:144
Alignment explanation
Indices: 33410612--33410947 Score: 539
Period size: 144 Copynumber: 2.3 Consensus size: 144
33410602 AGATAAATAT
*
33410612 ATATATGTGTGATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATATAT-ATGATATG
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA-GATATG
* *
33410676 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
65 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
*
33410741 AATGGCTAATGTGAA
130 AATGGCGAATGTGAA
* *
33410756 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* *
33410821 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
*
33410886 GTGGCGAATGTGAA
131 ATGGCGAATGTGAA
* * * *
33410900 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
33410948 TGTTGTAACA
Statistics
Matches: 177, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
144 176 0.99
145 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (144 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCGAATGTGAA
Found at i:33411042 original size:37 final size:37
Alignment explanation
Indices: 33410992--33411099 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
33410982 GGAAATATAT
*
33410992 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33411029 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
33411066 TCCGGGTAAGACCCGATAACTTCGTATGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
33411100 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:33413118 original size:17 final size:17
Alignment explanation
Indices: 33413096--33413142 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
33413086 GTACAGGTTA
*
33413096 TATGTGATGGTACGAAG
1 TATGTGATTGTACGAAG
*
33413113 TATGTGATTGTACGAGG
1 TATGTGATTGTACGAAG
33413130 TATGTGATTGTAC
1 TATGTGATTGTAC
33413143 AGAGTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.26, C:0.06, G:0.32, T:0.36
Consensus pattern (17 bp):
TATGTGATTGTACGAAG
Found at i:33413848 original size:13 final size:13
Alignment explanation
Indices: 33413830--33413854 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33413820 ACATGTGTTA
33413830 AATTTGGATTGAT
1 AATTTGGATTGAT
33413843 AATTTGGATTGA
1 AATTTGGATTGA
33413855 ATCTTAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (13 bp):
AATTTGGATTGAT
Found at i:33415853 original size:40 final size:40
Alignment explanation
Indices: 33415808--33415975 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
33415798 CGGAATACAA
*
33415808 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
33415848 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
33415888 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
33415928 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
33415968 CCGGATAT
1 CCGGATAT
33415976 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:33415948 original size:80 final size:80
Alignment explanation
Indices: 33415808--33415975 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
33415798 CGGAATACAA
* * *
33415808 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
33415873 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
33415888 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
33415951 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
33415968 CCGGATAT
1 CCGGATAT
33415976 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 75 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:33423860 original size:40 final size:40
Alignment explanation
Indices: 33423815--33423982 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
33423805 CGGAATACAA
*
33423815 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
33423855 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
33423895 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
33423935 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
33423975 CCGGATAT
1 CCGGATAT
33423983 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:33423955 original size:80 final size:80
Alignment explanation
Indices: 33423815--33423982 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
33423805 CGGAATACAA
* * *
33423815 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
33423880 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
33423895 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
33423958 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
33423975 CCGGATAT
1 CCGGATAT
33423983 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 75 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:33432134 original size:69 final size:69
Alignment explanation
Indices: 33432023--33432160 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
33432013 TCATTTAATG
33432023 ATTAAACATCCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATACATGTGTCTCTCATA
1 ATTAAACATCCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATACATGTGTCTCTCATA
33432088 CTCA
66 CTCA
33432092 ATTAAACATCCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATACATGTGTCTCTCATA
1 ATTAAACATCCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATACATGTGTCTCTCATA
33432157 CTCA
66 CTCA
33432161 TTTTACCTTG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (69 bp):
ATTAAACATCCTCAATTAAACCACAAACATAGCATTTGTATGTCATCATACATGTGTCTCTCATA
CTCA
Found at i:33437367 original size:38 final size:38
Alignment explanation
Indices: 33437316--33437476 Score: 232
Period size: 38 Copynumber: 4.2 Consensus size: 38
33437306 TCGAAATATG
* *
33437316 ATATCCGGGTTAAATCCAGCAGGGTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
33437354 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* * *
33437392 ATATCCAGGTTAAATCTCGCATGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* * *
33437430 ATATCCAGGTTAAATCCCGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
33437468 ATATTCGGG
1 ATATCCGGG
33437477 CCTTTGAGCC
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 110 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:33437566 original size:45 final size:44
Alignment explanation
Indices: 33437470--33437597 Score: 163
Period size: 46 Copynumber: 2.9 Consensus size: 44
33437460 CTGGTATTAT
* * *
33437470 ATTCGGGCCTTTGAGCCTAGCAGACTATTATGCCGGTGAGACATT
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA-ACATG
33437515 ATTCGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAA-ATG
1 ATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAACATG
* *
33437559 ATATCGGGCC-TTGAGCCTAGTAGGCGA-AATGCCGGTGAA
1 AT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
33437598 TGAATAAAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
42 12 0.16
43 13 0.17
44 6 0.08
45 20 0.26
46 25 0.33
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (44 bp):
ATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAACATG
Found at i:33441256 original size:34 final size:33
Alignment explanation
Indices: 33441199--33441274 Score: 98
Period size: 34 Copynumber: 2.3 Consensus size: 33
33441189 CTTAGGCCCC
* *
33441199 ACTGATACTGTTACTGTAATGGGCTCAGGCCTA
1 ACTGATACTCTTACTGTAATGGGCTAAGGCCTA
* * *
33441232 GACTGCTACTCTTATTGTATTGGGCTAAGGCCTA
1 -ACTGATACTCTTACTGTAATGGGCTAAGGCCTA
33441266 ACTGATACT
1 ACTGATACT
33441275 GGACTGGTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 8 0.22
34 28 0.78
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (33 bp):
ACTGATACTCTTACTGTAATGGGCTAAGGCCTA
Found at i:33443518 original size:29 final size:29
Alignment explanation
Indices: 33443485--33443616 Score: 194
Period size: 29 Copynumber: 4.6 Consensus size: 29
33443475 GTGACGAGAT
33443485 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
33443514 TGGCACTAAGTGTGCGTGTTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
33443543 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * **
33443572 TGGCACTAAGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
33443601 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33443617 AAATCGAGTA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 4 0.04
29 90 0.96
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:33451536 original size:34 final size:33
Alignment explanation
Indices: 33451493--33451568 Score: 107
Period size: 34 Copynumber: 2.3 Consensus size: 33
33451483 CTTGGGCCCC
*
33451493 ACTGATACTATTACTGTAATGGGCTCAGGCCTA
1 ACTGATACTATTACTGTAATGGGCTAAGGCCTA
* * *
33451526 GACTGCTACTATTATTGTATTGGGCTAAGGCCTA
1 -ACTGATACTATTACTGTAATGGGCTAAGGCCTA
33451560 ACTGATACT
1 ACTGATACT
33451569 GTACTGTTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 8 0.22
34 29 0.78
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (33 bp):
ACTGATACTATTACTGTAATGGGCTAAGGCCTA
Found at i:33451856 original size:15 final size:15
Alignment explanation
Indices: 33451838--33451867 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33451828 TTTAATTTGG
*
33451838 GGATTTATATTTGTT
1 GGATTTATATCTGTT
33451853 GGATTTATATCTGTT
1 GGATTTATATCTGTT
33451868 AGCAGTAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (15 bp):
GGATTTATATCTGTT
Done.