Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 113 of 425
Found at i:33456032 original size:27 final size:27
Alignment explanation
Indices: 33455948--33456022 Score: 123
Period size: 27 Copynumber: 2.8 Consensus size: 27
33455938 CATCACATAG
*
33455948 GGGTAAAACAGTCATTTTACCATAAAA
1 GGGTGAAACAGTCATTTTACCATAAAA
* *
33455975 GGGCGAAACAGTCCTTTTACCATAAAA
1 GGGTGAAACAGTCATTTTACCATAAAA
33456002 GGGTGAAACAGTCATTTTACC
1 GGGTGAAACAGTCATTTTACC
33456023 TCATAAGGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
GGGTGAAACAGTCATTTTACCATAAAA
Found at i:33456052 original size:41 final size:41
Alignment explanation
Indices: 33455991--33456072 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
33455981 AACAGTCCTT
**
33455991 TTACCATAAAAGGGTGAAACAGTCATTTTACCTCATAAGGG
1 TTACCATAAAAGGGCAAAACAGTCATTTTACCTCATAAGGG
* *
33456032 TTACCATATAAGGGCAAAACAGTTATTTTACCTCATAAGGG
1 TTACCATAAAAGGGCAAAACAGTCATTTTACCTCATAAGGG
33456073 CAAAACAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (41 bp):
TTACCATAAAAGGGCAAAACAGTCATTTTACCTCATAAGGG
Found at i:33456079 original size:68 final size:68
Alignment explanation
Indices: 33455964--33456099 Score: 175
Period size: 68 Copynumber: 2.0 Consensus size: 68
33455954 AACAGTCATT
* * ** *
33455964 TTACCATAAAAGGGCGAAACAGTCCTTTTACCATAAAAGGGTGAAACAGTCATTTTACCTCATAA
1 TTACCATAAAAGGGCAAAACAGTCATTTTACCATAAAAGGGCAAAACAATCATTTTACCTCATAA
33456029 GGG
66 GGG
* * * *
33456032 TTACCATATAAGGGCAAAACAGTTATTTTACC-TCATAAGGGCAAAACAATTATTTTACCTCATA
1 TTACCATAAAAGGGCAAAACAGTCATTTTACCAT-AAAAGGGCAAAACAATCATTTTACCTCATA
33456096 AGGG
65 AGGG
33456100 CAAAACAGTT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
67 1 0.02
68 57 0.98
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (68 bp):
TTACCATAAAAGGGCAAAACAGTCATTTTACCATAAAAGGGCAAAACAATCATTTTACCTCATAA
GGG
Found at i:33456169 original size:27 final size:27
Alignment explanation
Indices: 33456032--33456157 Score: 189
Period size: 27 Copynumber: 4.7 Consensus size: 27
33456022 CTCATAAGGG
*
33456032 TTACCATATAAGGGCAAAACAGTTATT
1 TTACCACATAAGGGCAAAACAGTTATT
* *
33456059 TTACCTCATAAGGGCAAAACAATTATT
1 TTACCACATAAGGGCAAAACAGTTATT
*
33456086 TTACCTCATAAGGGCAAAACAGTTATT
1 TTACCACATAAGGGCAAAACAGTTATT
* * *
33456113 TTACCATATAAGGGCAAAATAGTCATT
1 TTACCACATAAGGGCAAAACAGTTATT
33456140 TTACCACATAAGGGCAAA
1 TTACCACATAAGGGCAAA
33456158 GTAGTCATTT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.28
Consensus pattern (27 bp):
TTACCACATAAGGGCAAAACAGTTATT
Found at i:33456178 original size:27 final size:26
Alignment explanation
Indices: 33456032--33456180 Score: 122
Period size: 27 Copynumber: 5.5 Consensus size: 26
33456022 CTCATAAGGG
* *
33456032 TTACCATATAAGGGCAAAACAGTTATT
1 TTACCAT-TAAGGGCAAAATAGTCATT
* * *
33456059 TTACC-TCATAAGGGCAAAACAATTATT
1 TTACCAT--TAAGGGCAAAATAGTCATT
* *
33456086 TTACC-TCATAAGGGCAAAACAGTTATT
1 TTACCAT--TAAGGGCAAAATAGTCATT
33456113 TTACCATATAAGGGCAAAATAGTCATT
1 TTACCAT-TAAGGGCAAAATAGTCATT
* *
33456140 TTACCACATAAGGGCAAAGTAGTCATT
1 TTACCA-TTAAGGGCAAAATAGTCATT
*
33456167 TTATCGATTAAGGG
1 TTA-CCATTAAGGG
33456181 TTCAGGTACG
Statistics
Matches: 110, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
26 1 0.01
27 106 0.96
28 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (26 bp):
TTACCATTAAGGGCAAAATAGTCATT
Found at i:33456179 original size:54 final size:53
Alignment explanation
Indices: 33456032--33456180 Score: 174
Period size: 54 Copynumber: 2.8 Consensus size: 53
33456022 CTCATAAGGG
* *
33456032 TTACCATATAAGGGCAAAACAGTTATTTTACCTCA-TAAGGGCAAAACAATTATT
1 TTACCACATAAGGGCAAAACAGTTATTTTA--TCATTAAGGGCAAAACAATCATT
* * * *
33456086 TTACCTCATAAGGGCAAAACAGTTATTTTACCATATAAGGGCAAAATAGTCATT
1 TTACCACATAAGGGCAAAACAGTTATTTTATCAT-TAAGGGCAAAACAATCATT
** *
33456140 TTACCACATAAGGGCAAAGTAGTCATTTTATCGATTAAGGG
1 TTACCACATAAGGGCAAAACAGTTATTTTATC-ATTAAGGG
33456181 TTCAGGTACG
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
54 77 0.95
55 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (53 bp):
TTACCACATAAGGGCAAAACAGTTATTTTATCATTAAGGGCAAAACAATCATT
Found at i:33459735 original size:49 final size:48
Alignment explanation
Indices: 33459671--33459901 Score: 246
Period size: 49 Copynumber: 4.7 Consensus size: 48
33459661 AGGCTATCTG
* * *
33459671 GTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTAT-CA
* * ** *
33459720 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCT
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCA
* * * *
33459769 GATACACATAGTAGCCTGCACTTAGTACTACTCACGTGATCGAAGTTATCGG
1 G-TACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATC-A
* * *
33459821 GTACGCATAGTAGCCTGCACTTAGTAATACACATGCGACCAATTATCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCA
**
33459869 GGTACATGTAGTAGCCTGCACTTAGTACTACAC
1 -GTACACATAGTAGCCTGCACTTAGTACTACAC
33459902 GCGTGACCTC
Statistics
Matches: 151, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
49 70 0.46
50 44 0.29
51 36 0.24
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCA
Found at i:33459852 original size:101 final size:98
Alignment explanation
Indices: 33459666--33459901 Score: 274
Period size: 101 Copynumber: 2.4 Consensus size: 98
33459656 AGACAAGGCT
* * * *
33459666 ATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGT
* *
33459731 AGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AGCCTGCACTTAGTAATACACACGCGACC-AACC
* * * * ** *
33459765 ATCTGATACACATAGTAGCCTGCACTTAGTACTACTCACGTGATCGAAGTTATCGGGTACGCATA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCAGTACACATA
* **
33459830 GTAGCCTGCACTTAGTAATACACATGCGACCAATT
64 GTAGCCTGCACTTAGTAATACACACGCGACCAACC
* **
33459865 ATCAGGTACATGTAGTAGCCTGCACTTAGTACTACAC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACAC
33459902 GCGTGACCTC
Statistics
Matches: 114, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 37 0.32
100 37 0.32
101 40 0.35
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGT
AGCCTGCACTTAGTAATACACACGCGACCAACC
Found at i:33462550 original size:29 final size:29
Alignment explanation
Indices: 33462517--33462581 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
33462507 GTGACGAGAT
33462517 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
33462546 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
33462575 CGGCACT
1 TGGCACT
33462582 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:33470547 original size:29 final size:29
Alignment explanation
Indices: 33470446--33470539 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
33470436 GTGACGAGAT
33470446 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
33470475 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
33470504 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
33470533 CGGCACT
1 TGGCACT
33470540 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:33470564 original size:58 final size:58
Alignment explanation
Indices: 33470442--33470576 Score: 166
Period size: 58 Copynumber: 2.3 Consensus size: 58
33470432 TACGGTGACG
* *
33470442 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
33470499 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * * *
33470557 GGGTATGGTACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
33470577 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 62 0.94
59 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:33473982 original size:30 final size:30
Alignment explanation
Indices: 33473948--33474008 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
33473938 TCCTTAACTC
33473948 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
33473978 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
33474008 A
1 A
33474009 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:33475214 original size:30 final size:30
Alignment explanation
Indices: 33475173--33475229 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
33475163 AAAATCATAT
33475173 TTTGGCAAAATTACAATTTTGCCCCTAAAC
1 TTTGGCAAAATTACAATTTTGCCCCTAAAC
* *
33475203 TTTGTCAAAATTACATTTTTGCCCCTA
1 TTTGGCAAAATTACAATTTTGCCCCTA
33475230 GGCTCTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (30 bp):
TTTGGCAAAATTACAATTTTGCCCCTAAAC
Found at i:33485296 original size:46 final size:46
Alignment explanation
Indices: 33485220--33485319 Score: 173
Period size: 46 Copynumber: 2.2 Consensus size: 46
33485210 CATCTTAATC
33485220 ACTTACTTGAGAGGGAGATGAATGGCTGAAAGTTTTAAGCTTCAAA
1 ACTTACTTGAGAGGGAGATGAATGGCTGAAAGTTTTAAGCTTCAAA
* *
33485266 ACTTTCTTGAGAGGGAGATGAATGGTTGAAAGTTTTAAGCTTCAAA
1 ACTTACTTGAGAGGGAGATGAATGGCTGAAAGTTTTAAGCTTCAAA
33485312 ACCTTACT
1 A-CTTACT
33485320 CTTGTTGAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
46 45 0.90
47 5 0.10
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (46 bp):
ACTTACTTGAGAGGGAGATGAATGGCTGAAAGTTTTAAGCTTCAAA
Found at i:33490960 original size:28 final size:29
Alignment explanation
Indices: 33490903--33490963 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
33490893 CATTTTTGGC
* *
33490903 AAAATGACCATTTTGCCCCTAGACTTTCAA
1 AAAATAACCATTTTACCCCTAGAC-TTCAA
*
33490933 AAAATAACCATTTTACCCCTAGGC-TCAA
1 AAAATAACCATTTTACCCCTAGACTTCAA
33490961 AAA
1 AAA
33490964 TTAATTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 7 0.25
30 21 0.75
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.26
Consensus pattern (29 bp):
AAAATAACCATTTTACCCCTAGACTTCAA
Found at i:33493230 original size:20 final size:20
Alignment explanation
Indices: 33493205--33493253 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
33493195 GAGGCAAAGC
* *
33493205 ACACGCCCGTGTGCTTGGGG
1 ACACGCCCGTGTACTTGGGA
33493225 ACACGCCCGTGTACTTGGGA
1 ACACGCCCGTGTACTTGGGA
*
33493245 ACATGCCCG
1 ACACGCCCG
33493254 CGCCCCTCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (20 bp):
ACACGCCCGTGTACTTGGGA
Found at i:33502912 original size:48 final size:49
Alignment explanation
Indices: 33502787--33502916 Score: 185
Period size: 49 Copynumber: 2.7 Consensus size: 49
33502777 GTAGGATGCT
*
33502787 GATGCCATGTCCCAGACAGGTCTTACACT-GACTTTCATATATCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTAG-CTTGCATATATCGAGGCC
* *
33502836 GATGCCATGTCCCGGACAGGTCTTACACTAGCTTGCATATCTCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCC
*
33502885 GATG-CATGTCCCA-AGCATGTCTTACACTAGCT
1 GATGCCATGTCCCAGA-CAGGTCTTACACTAGCT
33502917 CTGTGTTGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 24 0.32
49 48 0.65
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATATCGAGGCC
Found at i:33506977 original size:20 final size:20
Alignment explanation
Indices: 33506952--33506995 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
33506942 ATTTTGATAA
33506952 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33506972 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
33506992 ACAT
1 ACAT
33506996 TAGGTGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:33507079 original size:23 final size:23
Alignment explanation
Indices: 33507049--33507191 Score: 214
Period size: 23 Copynumber: 6.1 Consensus size: 23
33507039 AGGAAGTGCA
33507049 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
33507072 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
33507095 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
33507118 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
**
33507142 AAAGGGCTTATGCCCCAGTTACAA
1 AAAGGGCTTATGCCCCAGTTA-TT
* *
33507166 AAAGGGCTTTTGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTATT
33507189 AAA
1 AAA
33507192 AGAGGCTAGG
Statistics
Matches: 111, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 70 0.63
24 41 0.37
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:33507433 original size:31 final size:31
Alignment explanation
Indices: 33507398--33507461 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
33507388 CGTTTACAGT
33507398 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
33507429 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
33507460 AA
1 AA
33507462 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:33524196 original size:16 final size:17
Alignment explanation
Indices: 33524175--33524207 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33524165 GTGATTTTTG
33524175 TTCTAT-TTTTTATGAT
1 TTCTATGTTTTTATGAT
*
33524191 TTCTATGTTTTTGTGAT
1 TTCTATGTTTTTATGAT
33524208 CGTTGCATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.15, C:0.06, G:0.12, T:0.67
Consensus pattern (17 bp):
TTCTATGTTTTTATGAT
Found at i:33524879 original size:40 final size:40
Alignment explanation
Indices: 33524835--33524928 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
33524825 ACTATGTGTG
* * *
33524835 GCACTTATTGTGCGT-TTTGAGATAGCTTCGGCTATACATA
1 GCACTTAGTGTGCGTATTGGA-ATAACTTCGGCTATACATA
* * *
33524875 GCACTTAGTATGCGTATTGGAATAACTTTGGCTATACATG
1 GCACTTAGTGTGCGTATTGGAATAACTTCGGCTATACATA
33524915 GCACTTAGTGTGCG
1 GCACTTAGTGTGCG
33524929 AGACCGAGAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (40 bp):
GCACTTAGTGTGCGTATTGGAATAACTTCGGCTATACATA
Found at i:33550249 original size:55 final size:53
Alignment explanation
Indices: 33550182--33550436 Score: 216
Period size: 55 Copynumber: 4.8 Consensus size: 53
33550172 ACTAGGGTTT
* *
33550182 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATCGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-GTTTCTAAGGC
* ** * * *
33550237 AAGGATATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT--TCTAAGGC
* * *
33550292 AAAGG-TCCCATGTAAGACCATGCCAACGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTC-TAAGGC
* * * * * *
33550345 AAGGATACCATGTAAGACCATGTCGAGACATGGAAATGGTAAGTTTC-CA---
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCTAAGGC
* * * * *
33550394 AAGGATACCACGTAAGACCATGACAAGTCATGGGAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAG
33550437 GTACCCGTGT
Statistics
Matches: 163, Mismatches: 31, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
49 38 0.23
52 6 0.04
53 39 0.24
54 10 0.06
55 66 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCTAAGGC
Found at i:33550388 original size:108 final size:110
Alignment explanation
Indices: 33550189--33550389 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
33550179 TTTAAGGATA
* *
33550189 CCATGTAAGACCATGCCAAGGCATGACAATCGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAACGCATGACAATCGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
33550254 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* * *
33550299 CCATGTAAGACCATGCCAACGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAACGCATGACAATCGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
33550361 ACCATGTCGAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
33550390 TCCAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 6 0.08
110 25 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAACGCATGACAATCGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:33550650 original size:16 final size:16
Alignment explanation
Indices: 33550629--33550659 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33550619 ATAAATTTGA
33550629 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
33550645 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
33550660 AGTTAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:33552294 original size:94 final size:90
Alignment explanation
Indices: 33552125--33552324 Score: 253
Period size: 94 Copynumber: 2.2 Consensus size: 90
33552115 CCCGGGTGTG
* * * *
33552125 GTCTTACACTAGCTCAACTCATAGTTGATGCATGTCCTAGACATGTCTTACTCTGGCTTACGTCT
1 GTCTTACACTAGCTCAACTCATAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTAT
*
33552190 CGAGGTTGATGCATGTCCCAGACAT
66 CGAGGCTGATGCATGTCCCAGACAT
*
33552215 GTCTTACACTAGCTCTCATCTCA-ATGCTGATGCCATGTCCCAGACATGTTCTTACACTGGCTCT
1 GTCTTACACTAG--CTCAACTCATA-GCTGATG-CATGTCCCAGACATG-TCTTACACTGGCT-T
33552279 -CGTAAT-GAGGCTGATGCATGTCCCAGACAT
60 ACGT-ATCGAGGCTGATGCATGTCCCAGACAT
*
33552309 GTCTTACACTAACTCA
1 GTCTTACACTAGCTCA
33552325 CAATAATCCA
Statistics
Matches: 96, Mismatches: 7, Indels: 12
0.83 0.06 0.10
Matches are distributed among these distances:
90 12 0.12
91 1 0.01
92 18 0.19
93 14 0.15
94 49 0.51
95 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (90 bp):
GTCTTACACTAGCTCAACTCATAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTAT
CGAGGCTGATGCATGTCCCAGACAT
Found at i:33552299 original size:47 final size:46
Alignment explanation
Indices: 33552150--33552318 Score: 216
Period size: 46 Copynumber: 3.6 Consensus size: 46
33552140 AACTCATAGT
* * *
33552150 TGATGCATGTCCTAGACATGTCTTACTCTGGCT-TACGTCTCGAGGT
1 TGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCGAGGC
* * * *
33552196 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGC
1 TGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGAGGC
*
33552242 TGATGCCATGTCCCAGACATGTTCTTACACTGGCTCTCGTAAT-GAGGC
1 TGATG-CATGTCCCAGACATG-TCTTACACTGGCTCTCGT-CTCGAGGC
33552290 TGATGCATGTCCCAGACATGTCTTACACT
1 TGATGCATGTCCCAGACATGTCTTACACT
33552319 AACTCACAAT
Statistics
Matches: 107, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
46 51 0.48
47 31 0.29
48 24 0.22
49 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (46 bp):
TGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGAGGC
Found at i:33559557 original size:21 final size:21
Alignment explanation
Indices: 33559533--33559572 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
33559523 AATTGTCCAA
33559533 AACAGAACATCATATGTAATC
1 AACAGAACATCATATGTAATC
33559554 AACAGAACATCATATGTAA
1 AACAGAACATCATATGTAA
33559573 CCTCATTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.10, T:0.23
Consensus pattern (21 bp):
AACAGAACATCATATGTAATC
Found at i:33561517 original size:40 final size:38
Alignment explanation
Indices: 33561372--33561521 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 38
33561362 ATAATCACGT
* * *
33561372 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATA-ACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGAT---ATAGCCTA
33561412 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCCTA
* *
33561450 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-A--GCCTA
* *
33561490 GCATAATTGTCC-TCGGGGCTTAGCCCGGATAT
1 GCACAATTG-CCTTCGGGTCTTAGCCCGGATAT
33561522 CATTCAATTT
Statistics
Matches: 96, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
37 5 0.05
38 30 0.31
39 1 0.01
40 54 0.56
41 6 0.06
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (38 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCCTA
Found at i:33566776 original size:40 final size:40
Alignment explanation
Indices: 33566731--33566898 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
33566721 CGGAATATAA
33566731 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
33566771 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
33566811 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
33566851 CCGGATATAATTTCCAGCATAATTGTCC-TCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATG-CCTTCGGGTCTTAGC
33566891 CCGGATAT
1 CCGGATAT
33566899 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 104 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:33572395 original size:32 final size:32
Alignment explanation
Indices: 33572352--33572419 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
33572342 CGACGTTTAT
*
33572352 ATAGGCTGATAGTAAAACTCAACGTTTAATTA
1 ATAGACTGATAGTAAAACTCAACGTTTAATTA
*
33572384 ATAGACTGATAGTAAAACTCAACGTTTCATTA
1 ATAGACTGATAGTAAAACTCAACGTTTAATTA
33572416 ATAG
1 ATAG
33572420 GAAATCCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (32 bp):
ATAGACTGATAGTAAAACTCAACGTTTAATTA
Found at i:33580151 original size:18 final size:18
Alignment explanation
Indices: 33580128--33580191 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
33580118 GAACAATTAT
*
33580128 TTATTCAGTAATAGTCAG
1 TTATTCAGTAATAATCAG
* * *
33580146 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAATCAG
*
33580164 TTATTCAATAATAATCAG
1 TTATTCAGTAATAATCAG
*
33580182 TTGTTCAGTA
1 TTATTCAGTA
33580192 TCAATCAACT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (18 bp):
TTATTCAGTAATAATCAG
Found at i:33580168 original size:36 final size:36
Alignment explanation
Indices: 33580115--33580199 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 36
33580105 TCATTAACAA
* * * *
33580115 TCAG-AACAATTATTTATTCAGTAATAGTCAGTTAT
1 TCAGTAACAATCAATTATTCAATAATAATCAGTTAT
* *
33580150 TCGGTAACAATCAATTATTCAATAATAATCAGTTGT
1 TCAGTAACAATCAATTATTCAATAATAATCAGTTAT
*
33580186 TCAGTATCAATCAA
1 TCAGTAACAATCAA
33580200 CTGATCGGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 3 0.07
36 38 0.93
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAATAATAATCAGTTAT
Found at i:33582085 original size:15 final size:15
Alignment explanation
Indices: 33582065--33582102 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
33582055 AATTTTTCCC
*
33582065 TTTTTCCTTCTTTCT
1 TTTTTCCTTCCTTCT
33582080 TTTTTCCTTCCTTCT
1 TTTTTCCTTCCTTCT
33582095 TTCTTTCC
1 TT-TTTCC
33582103 CCTACTCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTCCTTCCTTCT
Found at i:33582176 original size:2 final size:2
Alignment explanation
Indices: 33582169--33582201 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
33582159 TCCTTTACTT
33582169 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33582202 ATAACTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33585356 original size:42 final size:42
Alignment explanation
Indices: 33585302--33585541 Score: 236
Period size: 42 Copynumber: 5.7 Consensus size: 42
33585292 CATGTTTTAC
* *
33585302 TTTCTGTT-AGCTCTTACGACCTTCTGTTTAACTCATATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCATATGAG
* * *
33585343 TTTCCGTTCAGCTC-TATTGAGCTTCTGTTCAACTC-TCACGAG
1 TTTCTGTTCAGCTCTTA-CGAGCTTCTGTTCAACTCAT-ATGAG
* *
33585385 TTTTTGTTCAGCTCTTACGAGCTTCTGTTTAACTCATATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCATATGAG
* * * * *
33585427 TTTCCGTTCAGCTC-TATTGAGCTTATGTTAAACTCTTATGAG
1 TTTCTGTTCAGCTCTTA-CGAGCTTCTGTTCAACTCATATGAG
* * * ** * *
33585469 TTTTTGTTTAGCTCTTATGAGCTTCTAATCAACTCTTAAGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCATATGAG
* *
33585511 TTTCTGTTTAGCTCTAACGAGCTTCTGTTCA
1 TTTCTGTTCAGCTCTTACGAGCTTCTGTTCA
33585542 GCTTACGAGC
Statistics
Matches: 163, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
41 12 0.07
42 146 0.90
43 5 0.03
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCATATGAG
Found at i:33585372 original size:21 final size:22
Alignment explanation
Indices: 33585303--33585544 Score: 139
Period size: 21 Copynumber: 11.5 Consensus size: 22
33585293 ATGTTTTACT
* *
33585303 TTCTGTT-AGCTCT-TACGACC
1 TTCTGTTCAGCTCTATATGAGC
* * *
33585323 TTCTGTTTAACTC-ATATGAGT
1 TTCTGTTCAGCTCTATATGAGC
*
33585344 TTCCGTTCAGCTCTAT-TGAGC
1 TTCTGTTCAGCTCTATATGAGC
* * * *
33585365 TTCTGTTCAACTCT-CACGAGT
1 TTCTGTTCAGCTCTATATGAGC
* *
33585386 TTTTGTTCAGCTCT-TACGAGC
1 TTCTGTTCAGCTCTATATGAGC
* * *
33585407 TTCTGTTTAACTC-ATATGAGT
1 TTCTGTTCAGCTCTATATGAGC
*
33585428 TTCCGTTCAGCTCTAT-TGAGC
1 TTCTGTTCAGCTCTATATGAGC
* * * *
33585449 TTATGTTAAACTCT-TATGAGT
1 TTCTGTTCAGCTCTATATGAGC
* *
33585470 TTTTGTTTAGCTCT-TATGAGC
1 TTCTGTTCAGCTCTATATGAGC
** * * *
33585491 TTCTAATCAACTCT-TAAGAGT
1 TTCTGTTCAGCTCTATATGAGC
* *
33585512 TTCTGTTTAGCTCTA-ACGAGC
1 TTCTGTTCAGCTCTATATGAGC
33585533 TTCTGTTCAGCT
1 TTCTGTTCAGCT
33585545 TACGAGCTTC
Statistics
Matches: 165, Mismatches: 49, Indels: 15
0.72 0.21 0.07
Matches are distributed among these distances:
20 8 0.05
21 153 0.93
22 4 0.02
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.43
Consensus pattern (22 bp):
TTCTGTTCAGCTCTATATGAGC
Found at i:33585416 original size:84 final size:83
Alignment explanation
Indices: 33585306--33585541 Score: 319
Period size: 84 Copynumber: 2.8 Consensus size: 83
33585296 TTTTACTTTC
*
33585306 TGTTAGCTCTTACGACCTTCTGTTTAACTCATATGAGTTTCCGTTCAGCTCTATTGAGCTTCTGT
1 TGTTAGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTCCGTTCAGCTCTATTGAGCTTCTGT
33585371 TCAACTCTCACGAGTTTT
66 TCAACTCTCACGAGTTTT
*
33585389 TGTTCAGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTCCGTTCAGCTCTATTGAGCTTATG
1 TGTT-AGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTCCGTTCAGCTCTATTGAGCTTCTG
* * *
33585454 TTAAACTCTTATGAGTTTT
65 TTCAACTCTCACGAGTTTT
* ** * * * * * **
33585473 TGTTTAGCTCTTATGAGCTTCTAATCAACTCTTAAGAGTTTCTGTTTAGCTCTAACGAGCTTCTG
1 TG-TTAGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTCCGTTCAGCTCTATTGAGCTTCTG
33585538 TTCA
65 TTCA
33585542 GCTTACGAGC
Statistics
Matches: 134, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
83 4 0.03
84 128 0.96
85 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (83 bp):
TGTTAGCTCTTACGAGCTTCTGTTTAACTCATATGAGTTTCCGTTCAGCTCTATTGAGCTTCTGT
TCAACTCTCACGAGTTTT
Found at i:33588055 original size:13 final size:13
Alignment explanation
Indices: 33588037--33588061 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33588027 ATAATATTAA
33588037 AATTAATTTAATT
1 AATTAATTTAATT
33588050 AATTAATTTAAT
1 AATTAATTTAAT
33588062 CTCCCTCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTAATTTAATT
Found at i:33588511 original size:22 final size:22
Alignment explanation
Indices: 33588485--33588527 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
33588475 TAAACTTTCA
33588485 AATTTTAGAAGCAGACTAAATT
1 AATTTTAGAAGCAGACTAAATT
*
33588507 AATTTTAGAAGGAGACTAAAT
1 AATTTTAGAAGCAGACTAAAT
33588528 AAATCAACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.30
Consensus pattern (22 bp):
AATTTTAGAAGCAGACTAAATT
Found at i:33588558 original size:41 final size:40
Alignment explanation
Indices: 33588501--33588580 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 40
33588491 AGAAGCAGAC
33588501 TAAATTAATTTTAGAAGGAGACTAAATAAATCAACTGACAT
1 TAAATTAATTTTAGAAGGAGACTAAAT-AATCAACTGACAT
33588542 TAAATTAATTTTAGAAGGAGACTAAATAATCAACTGACA
1 TAAATTAATTTTAGAAGGAGACTAAATAATCAACTGACA
33588581 CTATCAAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
40 12 0.31
41 27 0.69
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (40 bp):
TAAATTAATTTTAGAAGGAGACTAAATAATCAACTGACAT
Found at i:33590642 original size:20 final size:20
Alignment explanation
Indices: 33590606--33590652 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
33590596 ATATATTCTG
*
33590606 ATTT-ATTTTATTCTAATCA
1 ATTTGATTTGATTCTAATCA
*
33590625 ATTTGATTTGATTTTAATCA
1 ATTTGATTTGATTCTAATCA
*
33590645 AATTGATT
1 ATTTGATT
33590653 CAATTTCCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (20 bp):
ATTTGATTTGATTCTAATCA
Found at i:33590658 original size:20 final size:20
Alignment explanation
Indices: 33590619--33590658 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33590609 TATTTTATTC
* **
33590619 TAATCAATTTGATTTGATTT
1 TAATCAAATTGATTCAATTT
33590639 TAATCAAATTGATTCAATTT
1 TAATCAAATTGATTCAATTT
33590659 CCCATTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.50
Consensus pattern (20 bp):
TAATCAAATTGATTCAATTT
Found at i:33598076 original size:30 final size:31
Alignment explanation
Indices: 33598006--33598088 Score: 116
Period size: 30 Copynumber: 2.7 Consensus size: 31
33597996 TCAATCTCAA
*
33598006 CATAT-ACTTGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* *
33598036 CATGTCACTGGGCCGAAGCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
*
33598066 CATATCACTGGGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
33598089 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 26 0.55
31 21 0.45
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:33598416 original size:11 final size:11
Alignment explanation
Indices: 33598400--33598448 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
33598390 TATATGAATT
33598400 TATCATGTGCA
1 TATCATGTGCA
*
33598411 TATCA--TACA
1 TATCATGTGCA
33598420 TATCATGTGCA
1 TATCATGTGCA
33598431 TATCATGT-CA
1 TATCATGTGCA
*
33598441 AATCATGT
1 TATCATGT
33598449 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:33605906 original size:30 final size:31
Alignment explanation
Indices: 33605835--33605908 Score: 105
Period size: 30 Copynumber: 2.4 Consensus size: 31
33605825 ACATATACTT
* *
33605835 GGCCGAAGCCTTTGCATTATTCATGTCACTG
1 GGCCGAAGCCTTTGCATTATTCATATCACCG
*
33605866 GGCCGAAGCCTTTTCATTA-TCATATCACCG
1 GGCCGAAGCCTTTGCATTATTCATATCACCG
*
33605896 GGCTGAAGCCTTT
1 GGCCGAAGCCTTT
33605909 ACTGTAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 21 0.54
31 18 0.46
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (31 bp):
GGCCGAAGCCTTTGCATTATTCATATCACCG
Found at i:33606205 original size:26 final size:25
Alignment explanation
Indices: 33606128--33606223 Score: 158
Period size: 25 Copynumber: 3.8 Consensus size: 25
33606118 CTCTTTTAAT
*
33606128 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
33606153 AACTGGGGCAACA-CCCTTTTCGGTA
1 AACTGGGGCAA-AGCCCTTTTCGGTA
33606178 AACTGGGGCAAAGCCCTTTTTCGGTA
1 AACTGGGGCAAAGCCC-TTTTCGGTA
33606204 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
33606224 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
24 1 0.01
25 40 0.60
26 26 0.39
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:33606221 original size:51 final size:50
Alignment explanation
Indices: 33606128--33606223 Score: 158
Period size: 51 Copynumber: 1.9 Consensus size: 50
33606118 CTCTTTTAAT
33606128 AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAACACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAACACCCTTTTCGGTA
*
33606178 AACTGGGGCAAAGCCCTTTTTCGGTAAACTGGGGCAA-AGCCCTTTT
1 AACTGGGGCAAAGCCC-TTTTCGATAAACTGGGGCAACA-CCCTTTT
33606224 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
50 17 0.40
51 26 0.60
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAACACCCTTTTCGGTA
Found at i:33606287 original size:11 final size:11
Alignment explanation
Indices: 33606271--33606319 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
33606261 TATATGAATT
33606271 TATCATGTGCA
1 TATCATGTGCA
*
33606282 TATCA--TACA
1 TATCATGTGCA
33606291 TATCATGTGCA
1 TATCATGTGCA
33606302 TATCATGT-CA
1 TATCATGTGCA
*
33606312 AATCATGT
1 TATCATGT
33606320 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:33618101 original size:40 final size:39
Alignment explanation
Indices: 33618010--33618160 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
33618000 ATCACGATTT
*
33618010 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
33618050 GTACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
33618090 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
33618130 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
33618161 TCATTCAATT
Statistics
Matches: 89, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 83 0.93
41 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:33634219 original size:79 final size:79
Alignment explanation
Indices: 33634088--33634248 Score: 322
Period size: 79 Copynumber: 2.0 Consensus size: 79
33634078 GTAGAGGGAT
33634088 ATGGTTGATCAATATAGAATAAGTACCTCCTACACAATGGGAGTAATATCTTAGGCCACTTGATT
1 ATGGTTGATCAATATAGAATAAGTACCTCCTACACAATGGGAGTAATATCTTAGGCCACTTGATT
33634153 GAGTGAGACTAGAA
66 GAGTGAGACTAGAA
33634167 ATGGTTGATCAATATAGAATAAGTACCTCCTACACAATGGGAGTAATATCTTAGGCCACTTGATT
1 ATGGTTGATCAATATAGAATAAGTACCTCCTACACAATGGGAGTAATATCTTAGGCCACTTGATT
33634232 GAGTGAGACTAGAA
66 GAGTGAGACTAGAA
33634246 ATG
1 ATG
33634249 CATGACCATG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (79 bp):
ATGGTTGATCAATATAGAATAAGTACCTCCTACACAATGGGAGTAATATCTTAGGCCACTTGATT
GAGTGAGACTAGAA
Found at i:33641937 original size:29 final size:29
Alignment explanation
Indices: 33641884--33641951 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
33641874 ATACAAGTCT
**
33641884 TTAATATGTCTTAGCTTAAATACATGTTA
1 TTAATATGTCTTAAATTAAATACATGTTA
*
33641913 TTAATATGTCTTCAAATTAAA-ACATGTTT
1 TTAATATGTCTT-AAATTAAATACATGTTA
*
33641942 TTAATTTGTC
1 TTAATATGTC
33641952 CTAGTGCAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 28 0.82
30 6 0.18
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (29 bp):
TTAATATGTCTTAAATTAAATACATGTTA
Found at i:33646105 original size:18 final size:18
Alignment explanation
Indices: 33646082--33646117 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
33646072 TAATGCTTAC
33646082 AGTATGATAGTATGTTGG
1 AGTATGATAGTATGTTGG
33646100 AGTATGATAGTATGTTGG
1 AGTATGATAGTATGTTGG
33646118 TGTGAAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (18 bp):
AGTATGATAGTATGTTGG
Found at i:33647737 original size:153 final size:153
Alignment explanation
Indices: 33647459--33647767 Score: 582
Period size: 153 Copynumber: 2.0 Consensus size: 153
33647449 CCAGTATGTA
33647459 CATGAACTGTATAAGCTTTAAATTGAAGTAATTTGTGAAGATCACATATAATCTTCTGATTGAAT
1 CATGAACTGTATAAGCTTTAAATTGAAGTAATTTGTGAAGATCACATATAATCTTCTGATTGAAT
* *
33647524 AAGTGAAAGGTTTGTTAGTTAATATGAGTTACATGATGATATATTAAATTTGTTGAATTGTGTAT
66 AAGTGAAAGGTTTGTTAGTTAATATGAGTTACATGATGATACATTAAATATGTTGAATTGTGTAT
33647589 TGATGATTATATAAAGTTTATTG
131 TGATGATTATATAAAGTTTATTG
*
33647612 CATGAACTGTATAAGCTTTAAATTGAAGTGATTTGTGAAGATCACATATAATCTTCTGATTGAAT
1 CATGAACTGTATAAGCTTTAAATTGAAGTAATTTGTGAAGATCACATATAATCTTCTGATTGAAT
33647677 AAGTGAAAGGTTTGTTAGTTAATATGAGTTACATGATGATACATTAAATATGTTGAATTGTGTAT
66 AAGTGAAAGGTTTGTTAGTTAATATGAGTTACATGATGATACATTAAATATGTTGAATTGTGTAT
*
33647742 TGATGATTATATTAAGTTTATTG
131 TGATGATTATATAAAGTTTATTG
33647765 CAT
1 CAT
33647768 ACGAGCTTAC
Statistics
Matches: 152, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 152 1.00
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (153 bp):
CATGAACTGTATAAGCTTTAAATTGAAGTAATTTGTGAAGATCACATATAATCTTCTGATTGAAT
AAGTGAAAGGTTTGTTAGTTAATATGAGTTACATGATGATACATTAAATATGTTGAATTGTGTAT
TGATGATTATATAAAGTTTATTG
Found at i:33649911 original size:6 final size:6
Alignment explanation
Indices: 33649881--33649980 Score: 69
Period size: 6 Copynumber: 16.3 Consensus size: 6
33649871 AAGAAACATT
* * * *
33649881 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATTAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
33649930 ATCAGA ATTAGA ATCAGA ATCAGT ATTAGGA AACAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-GA ATCAGA ATCAGA ATCAGA
33649979 AT
1 AT
33649981 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
5 2 0.03
6 60 0.86
7 7 0.10
8 1 0.01
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:33649966 original size:37 final size:37
Alignment explanation
Indices: 33649890--33649980 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 37
33649880 TATCAGAACT
* * **
33649890 AGAATCAAAATGAGAATCAGAATTAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGAAAC
* * * *
33649927 AGAATCAGAATTAGAATCAGAATCAGTATTAGGAAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGAAAC
33649964 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
33649981 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGAAAC
Found at i:33650145 original size:27 final size:26
Alignment explanation
Indices: 33650097--33650156 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
33650087 GCGAGACTGC
*
33650097 CAGATATTGTGACGAAGTCACCAAATA
1 CAGATATTGTGACGAAGCCACCAAA-A
* * * *
33650124 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAAAA
33650150 CAGATAT
1 CAGATAT
33650157 CTATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:33650692 original size:27 final size:27
Alignment explanation
Indices: 33650417--33650689 Score: 370
Period size: 27 Copynumber: 10.1 Consensus size: 27
33650407 TAACACCCTA
** * *
33650417 AGGGTAAAATGGTAATTTTATAAATCA
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
33650444 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
33650471 AGGGTAAAATAGTAATTTTGTAAATAG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
33650498 AGGGTAAAATAGTAATTCTGTCAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
33650525 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
33650552 AGGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
33650579 TGGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
33650606 AGGGTAAAACAATAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
33650633 AGGGTAAAAC-GATAATTTTGTAAATCG
1 AGGGTAAAACAG-TAATTTTGTAAATCG
* * *
33650660 AGGGTAAAACGGTAATTCTATAAATC-
1 AGGGTAAAACAGTAATTTTGTAAATCG
33650686 AGGG
1 AGGG
33650690 GTACTTTGGT
Statistics
Matches: 224, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
26 4 0.02
27 219 0.98
28 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTTTGTAAATCG
Found at i:33650718 original size:27 final size:27
Alignment explanation
Indices: 33650682--33650893 Score: 139
Period size: 27 Copynumber: 7.9 Consensus size: 27
33650672 TAATTCTATA
*
33650682 AATC-AGGGGTACTTTGGTAATTTTAC
1 AATCGAGGGGTATTTTGGTAATTTTAC
*** *
33650708 AAGTCGA-GGGTATTTCAATAATTTTAT
1 AA-TCGAGGGGTATTTTGGTAATTTTAC
* * ** *
33650735 AGGTCGA-CGGTATTTCAGTAATTTCAC
1 A-ATCGAGGGGTATTTTGGTAATTTTAC
*
33650762 AAAT-TAGGGGTATTTTGGTAATTTTAC
1 -AATCGAGGGGTATTTTGGTAATTTTAC
* *
33650789 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATCGAGGGGTATTTTGGTAATTTTAC
* *
33650816 AAACCAGGGGTATTTTGGTAATTTGGTA-
1 AATCGAGGGGTATTTTGGTAATTT--TAC
* * * *
33650844 AATC-AAGGGTAGTTTAGCAATTTTAC
1 AATCGAGGGGTATTTTGGTAATTTTAC
* * *
33650870 AAACCAGGGGTGTTTTGGTAATTT
1 AATCGAGGGGTATTTTGGTAATTT
33650894 GGTAAACTAA
Statistics
Matches: 147, Mismatches: 29, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
25 2 0.01
26 8 0.05
27 130 0.88
28 5 0.03
29 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.38
Consensus pattern (27 bp):
AATCGAGGGGTATTTTGGTAATTTTAC
Found at i:33650828 original size:81 final size:81
Alignment explanation
Indices: 33650743--33650893 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 81
33650733 ATAGGTCGAC
* * * * * *
33650743 GGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTCAGTAATTTCACAAATCAAGGGTAGTTTAGCAATTTTACAAACCAGGGGTATTTTGGT
33650808 AATTTTACAAACCAGG
66 AATTTTACAAACCAGG
** *** *
33650824 GGTATTTTGGTAATTTGGTAAATCAAGGGTAGTTTAGCAATTTTACAAACCAGGGGTGTTTTGGT
1 GGTATTTCAGTAATTTCACAAATCAAGGGTAGTTTAGCAATTTTACAAACCAGGGGTATTTTGGT
33650889 AATTT
66 AATTT
33650894 GGTAAACTAA
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 58 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (81 bp):
GGTATTTCAGTAATTTCACAAATCAAGGGTAGTTTAGCAATTTTACAAACCAGGGGTATTTTGGT
AATTTTACAAACCAGG
Found at i:33650854 original size:54 final size:55
Alignment explanation
Indices: 33650743--33650903 Score: 195
Period size: 54 Copynumber: 3.0 Consensus size: 55
33650733 ATAGGTCGAC
* * ** *
33650743 GGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTT--TACAAACTAGG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTA-AAACTAAG
* *
33650797 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAATC-AAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAAACTAAG
* * *
33650851 GGTAGTTTAGCAATTTTACAAACCAGGGGTGTTTTGGTAATTTGGT-AAACTAA
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAAACTAA
33650904 AGTATTCTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 3 0.03
54 84 0.91
55 3 0.03
56 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (55 bp):
GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAAACTAAG
Found at i:33650900 original size:27 final size:27
Alignment explanation
Indices: 33650743--33650893 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
33650733 ATAGGTCGAC
** * **
33650743 GGTATTTCAGTAATTTCACAAATTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
33650770 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
33650797 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*** * *
33650824 GGTATTTTGGTAATTTGGTAAATCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
33650851 GGTAGTTTAGCAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
33650878 GGTGTTTTGGTAATTT
1 GGTATTTTGGTAATTT
33650894 GGTAAACTAA
Statistics
Matches: 102, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:33652880 original size:6 final size:6
Alignment explanation
Indices: 33652857--33652978 Score: 61
Period size: 6 Copynumber: 19.8 Consensus size: 6
33652847 TGTCAAAACT
* * * * * *
33652857 AGAATC AAAATA AGAATC AGAATC AGAATC AG-GTGAC AAAATT AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * *
33652906 AGAATC AGAATC AGAATT AG-GTGAC AGAATT AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
*
33652955 AGGTAA-C AGAATC AAAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
33652979 GTGAATGCAA
Statistics
Matches: 85, Mismatches: 22, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
5 4 0.05
6 72 0.85
7 6 0.07
8 3 0.04
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:33652904 original size:31 final size:31
Alignment explanation
Indices: 33652862--33652978 Score: 108
Period size: 31 Copynumber: 3.6 Consensus size: 31
33652852 AAACTAGAAT
* *
33652862 CAAAATAAGAATCAGAATCAGAATCAGGTGA
1 CAAAATTAGAATCAGAATCAGAATTAGGTGA
33652893 CAAAATTAGAATTAGAATCAGAATCAGAATTAGGTGA
1 C---A--A-AATTAGAATCAGAATCAGAATTAGGTGA
* * *
33652930 CAGAATTAGAATCAGAATCAGTATTAGGTAA
1 CAAAATTAGAATCAGAATCAGAATTAGGTGA
* * *
33652961 CAGAATCAAAATCAGAAT
1 CAAAATTAGAATCAGAAT
33652979 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
31 43 0.59
34 2 0.03
36 1 0.01
37 27 0.37
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21
Consensus pattern (31 bp):
CAAAATTAGAATCAGAATCAGAATTAGGTGA
Found at i:33652919 original size:37 final size:37
Alignment explanation
Indices: 33652869--33652950 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
33652859 AATCAAAATA
*
33652869 AGAATCAGAATCAGAATCAGGTGACAAAATTAGAATT
1 AGAATCAGAATCAGAATCAGGTGACAAAATTAGAATC
* *
33652906 AGAATCAGAATCAGAATTAGGTGACAGAATTAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAAAATTAGAATC
33652943 AGAATCAG
1 AGAATCAG
33652951 TATTAGGTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.21
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGGTGACAAAATTAGAATC
Found at i:33652978 original size:37 final size:36
Alignment explanation
Indices: 33652857--33652978 Score: 128
Period size: 37 Copynumber: 3.4 Consensus size: 36
33652847 TGTCAAAACT
*
33652857 AGAATCAAAATAAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAAT-AGAATCAGAATCAGAATTAGGTGAC
* * *
33652894 AAAATTAGAATTAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCA-AAATAGAATCAGAATCAGAATTAGGTGAC
* *
33652931 AGAAT-----TAGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAAAATAGAATCAGAATCAGAATTAGGTGAC
33652962 AGAATCAAAATCAGAAT
1 AGAATCAAAAT-AGAAT
33652979 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
31 29 0.41
36 1 0.01
37 38 0.54
38 3 0.04
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21
Consensus pattern (36 bp):
AGAATCAAAATAGAATCAGAATCAGAATTAGGTGAC
Found at i:33653145 original size:27 final size:26
Alignment explanation
Indices: 33653097--33653156 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
33653087 GCGAGGCTGC
*
33653097 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
33653124 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
33653150 CAGATAT
1 CAGATAT
33653157 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:33653663 original size:27 final size:27
Alignment explanation
Indices: 33653415--33653639 Score: 342
Period size: 27 Copynumber: 8.3 Consensus size: 27
33653405 TAACACCTTA
** *
33653415 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
33653442 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
33653469 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
33653496 AGGGTAAAACAGTAATTCTGTCAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
33653523 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
33653550 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
33653577 AGGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
33653604 AGGGTAAAACAATAATTTTGTAAATTG
1 AGGGTAAAACAGTAATTTTGTAAATCG
33653631 AGGGTAAAA
1 AGGGTAAAA
33653640 TGGTAATTCT
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 181 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTTTGTAAATCG
Found at i:33653700 original size:27 final size:27
Alignment explanation
Indices: 33653670--33653734 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
33653660 GGTACTTTGG
33653670 TAATTTTACAAGTCGAAGGTATTTCAA
1 TAATTTTACAAGTCGAAGGTATTTCAA
* * * *
33653697 TAATTTTATAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAAGGTATTTCAA
*
33653724 TAATTTCACAA
1 TAATTTTACAA
33653735 ATTAGGGGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCGAAGGTATTTCAA
Found at i:33653871 original size:27 final size:27
Alignment explanation
Indices: 33653713--33653864 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
33653703 TATAGGTCGA
** * **
33653713 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
33653740 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
33653767 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
33653794 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
33653821 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
33653848 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
33653865 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:33656185 original size:41 final size:41
Alignment explanation
Indices: 33656128--33656232 Score: 156
Period size: 41 Copynumber: 2.6 Consensus size: 41
33656118 TAAGTGATAT
* *
33656128 TCAGGCTTTTTGCCTAGCAGGCTTTATGCTGGTGAATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGAATTATA
* *
33656169 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGAATTATA
* *
33656210 TCAGGCCTATTGCCTAACAGGCT
1 TCAGGCTTATTGCCTAGCAGGCT
33656233 CTGTGCCAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGAATTATA
Found at i:33656246 original size:41 final size:41
Alignment explanation
Indices: 33656163--33656250 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
33656153 ATGCTGGTGA
* * * **
33656163 ATTATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGT
1 ATTATATCAGGCCTATTGCCTAACAGGCTCTATGCCAATGT
* *
33656204 ATTATTTCAGGCCTATTGCCTAACAGGCTCTGTGCCAATGT
1 ATTATATCAGGCCTATTGCCTAACAGGCTCTATGCCAATGT
33656245 ATTATA
1 ATTATA
33656251 CTAGGCTTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (41 bp):
ATTATATCAGGCCTATTGCCTAACAGGCTCTATGCCAATGT
Found at i:33657247 original size:31 final size:31
Alignment explanation
Indices: 33657212--33657274 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
33657202 TAGCTATTTA
*
33657212 TTTTGGTTAATGTATCCATGTAAAAGTTATG
1 TTTTGGTCAATGTATCCATGTAAAAGTTATG
33657243 TTTTGGTCAATGTATCCATGTAAAAGTTATG
1 TTTTGGTCAATGTATCCATGTAAAAGTTATG
33657274 T
1 T
33657275 CATAAAATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (31 bp):
TTTTGGTCAATGTATCCATGTAAAAGTTATG
Found at i:33658454 original size:125 final size:125
Alignment explanation
Indices: 33658232--33658484 Score: 488
Period size: 125 Copynumber: 2.0 Consensus size: 125
33658222 CGTCAAGTGA
33658232 GTGATCCGTTGAGATGGCCTAAGCCACCTATTGATAAAATAAAAAAACACGGGGCTAAAGAATTC
1 GTGATCCGTTGAGATGGCCTAAGCCACCTATTGATAAAATAAAAAAACACGGGGCTAAAGAATTC
*
33658297 AGAGCTACTGATGATGATGATGTTGAGCAAGCTGAATTCTAGCTTGACAATAATATCCGT
66 AAAGCTACTGATGATGATGATGTTGAGCAAGCTGAATTCTAGCTTGACAATAATATCCGT
33658357 GTGATCCGTTGAGATGGCCTAAGCCACCTATTGATAAAATAAAAAAACACGGGGCTAAAGAATTC
1 GTGATCCGTTGAGATGGCCTAAGCCACCTATTGATAAAATAAAAAAACACGGGGCTAAAGAATTC
*
33658422 AAAGCTACTGATGATGATGATGTTGAGCAAGCTGAATTCTAGCTTGACAATACTATCCGT
66 AAAGCTACTGATGATGATGATGTTGAGCAAGCTGAATTCTAGCTTGACAATAATATCCGT
33658482 GTG
1 GTG
33658485 TTTGATGAGT
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 126 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (125 bp):
GTGATCCGTTGAGATGGCCTAAGCCACCTATTGATAAAATAAAAAAACACGGGGCTAAAGAATTC
AAAGCTACTGATGATGATGATGTTGAGCAAGCTGAATTCTAGCTTGACAATAATATCCGT
Found at i:33664076 original size:41 final size:41
Alignment explanation
Indices: 33664019--33664114 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
33664009 TCAGTGATAT
* *
33664019 TCAGGCTTTCTGCCTAGCAGGCTTTATGCCGGTGAATTATA
1 TCAGGCTTTCTGCCTAGCAGGCTTTATGCCAGTGAATTACA
* * *
33664060 TCAGGCTTAT-TGCCTAGTAGGCTTTATGCTAGTGTATTACA
1 TCAGGCTT-TCTGCCTAGCAGGCTTTATGCCAGTGAATTACA
*
33664101 TCAGGCTTTATGCC
1 TCAGGCTTTCTGCC
33664115 GGTGTATTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 1 0.02
41 46 0.96
42 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (41 bp):
TCAGGCTTTCTGCCTAGCAGGCTTTATGCCAGTGAATTACA
Found at i:33664115 original size:66 final size:67
Alignment explanation
Indices: 33664036--33664180 Score: 195
Period size: 66 Copynumber: 2.2 Consensus size: 67
33664026 TTCTGCCTAG
* * * *
33664036 CAGGCTTTATGCCGGTGAATTATATCAGGCTTATTGCCTAGTAGGCTTTATGCTAGTGTATTA-C
1 CAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAGGCTCTATGCCAGTGTATTATC
33664100 AT
66 AT
* * * *
33664102 CAGGCTTTATGCCGGTGTATTATTTCAGGCCTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATC
1 CAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAGGCTCTATGCCAGTGTATTATC
*
33664167 CT
66 AT
33664169 -AGGCTTTATGCC
1 CAGGCTTTATGCC
33664181 TAGCAAATTT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 67 0.97
67 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.37
Consensus pattern (67 bp):
CAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAGGCTCTATGCCAGTGTATTATC
AT
Found at i:33665163 original size:31 final size:31
Alignment explanation
Indices: 33665128--33665190 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
33665118 TAGCTATTTA
33665128 TTTTGGTTAATGTATCCATGTAAAAGTTATG
1 TTTTGGTTAATGTATCCATGTAAAAGTTATG
33665159 TTTTGGTTAATGTATCCATGTAAAAGTTATG
1 TTTTGGTTAATGTATCCATGTAAAAGTTATG
33665190 T
1 T
33665191 CATAAAATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (31 bp):
TTTTGGTTAATGTATCCATGTAAAAGTTATG
Found at i:33668446 original size:100 final size:100
Alignment explanation
Indices: 33668135--33668516 Score: 392
Period size: 100 Copynumber: 3.9 Consensus size: 100
33668125 GGTGCTCACA
** * * * * * * *
33668135 CCATGTCCTGGACATGGTTTTACACT-G-GCTCACACATCAAAGTCGATGCCATGTCCCAAACAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATACCTCAAGGCCGATGCCATGTCCCAGACAT
** *
33668198 GGTCTTACACT-GACTCTTGTATATCGAGGCCGATG
66 GGTCTTACACTAG-CTCTCATATCTCGAGGCCGATG
* * * * *
33668233 CCATGTCCTAGACATGGTCTTACACTGGCTCTCAT--CT-ATAGGTGCTGATGTCATGTCTCA-A
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATACCTCA-A-G-GCCGATGCCATGTCCCAGA
* * * * * * *
33668294 TATAGTCTTACA-TTG-ACACATA--T-GAAGTCGATG
63 CATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATG
33668327 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATACCTCAAGGCCGATGCCATGTCCCAGACAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATACCTCAAGGCCGATGCCATGTCCCAGACAT
*
33668392 GGTCTTACACTAGCTCTCATATCTCGAGGCCAATG
66 GGTCTTACACTAGCTCTCATATCTCGAGGCCGATG
* * *
33668427 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCAATGCCATGTCCCAGACAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATACCTCAAGGCCGATGCCATGTCCCAGACAT
33668492 GGTCTTACACTAGCTCTCATATCTC
66 GGTCTTACACTAGCTCTCATATCTC
33668517 CCTAGCATCA
Statistics
Matches: 235, Mismatches: 34, Indels: 28
0.79 0.11 0.09
Matches are distributed among these distances:
94 55 0.23
95 13 0.06
96 5 0.02
97 10 0.04
98 27 0.11
99 14 0.06
100 111 0.47
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (100 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCATACCTCAAGGCCGATGCCATGTCCCAGACAT
GGTCTTACACTAGCTCTCATATCTCGAGGCCGATG
Found at i:33668514 original size:50 final size:50
Alignment explanation
Indices: 33668178--33668516 Score: 397
Period size: 50 Copynumber: 6.9 Consensus size: 50
33668168 ACATCAAAGT
* ** *
33668178 CGATGCCATGTCCCAAACATGGTCTTACACT-GACTCTTGTATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATCTCGAGGC
* * * * *
33668228 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATCTATAG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAG-GC
* * * * * * * * * *
33668278 TGATGTCATGTCTCA-ATATAGTCTTACA-TTG-ACACATA--T-GAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
* *
33668322 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACCTCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
33668372 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
*
33668422 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
*
33668472 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
33668517 CCTAGCATCA
Statistics
Matches: 248, Mismatches: 32, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
44 14 0.06
45 12 0.05
46 2 0.01
47 9 0.04
48 2 0.01
49 13 0.05
50 195 0.79
51 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGC
Found at i:33674872 original size:48 final size:47
Alignment explanation
Indices: 33674762--33675039 Score: 380
Period size: 48 Copynumber: 5.8 Consensus size: 47
33674752 ATGAGATTCC
* *
33674762 GTGTAAGACCATGTCTGGGACATGGCATCGAC-ATCCGAGATATGTTCCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCG-CGAT--GATATATGTGCC-A
* *
33674812 -TATAAGACCATGTATGGGACATGGCATCAGCGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCGATGATATATGTGCCA
*
33674859 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATTTATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCG-CGATGATATATGTGCCA
*
33674907 GTGTAAGACCATATCTGGGACATGGCATCGGCGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCGATGATATATGTGCCA
*
33674955 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCGATGATATATGTGCCA
* *
33675003 GTGTAAGACCATATCTAGGACATGGCATCGGCGATGA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCGATGA
33675040 CATGTGGATT
Statistics
Matches: 208, Mismatches: 15, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
47 2 0.01
48 175 0.84
49 28 0.13
50 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGCGATGATATATGTGCCA
Found at i:33675024 original size:144 final size:144
Alignment explanation
Indices: 33674762--33675039 Score: 425
Period size: 144 Copynumber: 1.9 Consensus size: 144
33674752 ATGAGATTCC
* *
33674762 GTGTAAGACCATGTCTGGGACATGGCATCGACATCCGAGATATGTTCCTATATAAGACCATGTAT
1 GTGTAAGACCATATCTGGGACATGGCATCGACAT-CGAGATATGTGCCTATATAAGACCATGTAT
* *
33674827 GGGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACG
65 GGGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATATCTAGGACATGGCATCGACG
33674892 ATGATTTATGTGCCA
130 ATGATTTATGTGCCA
* * * *
33674907 GTGTAAGACCATATCTGGGACATGGCATCGGCGAT-GATATATGTGCC-AGTGTAAGACCATGTC
1 GTGTAAGACCATATCTGGGACATGGCATCGAC-ATCGAGATATGTGCCTA-TATAAGACCATGTA
* *
33674970 TGGGACATGGCATCAGCGATGATATATGTGCTAGTGTAAGACCATATCTAGGACATGGCATCGGC
64 TGGGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATATCTAGGACATGGCATCGAC
33675035 GATGA
129 GATGA
33675040 CATGTGGATT
Statistics
Matches: 121, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
143 1 0.01
144 88 0.73
145 30 0.25
146 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (144 bp):
GTGTAAGACCATATCTGGGACATGGCATCGACATCGAGATATGTGCCTATATAAGACCATGTATG
GGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATATCTAGGACATGGCATCGACGA
TGATTTATGTGCCA
Found at i:33675072 original size:48 final size:47
Alignment explanation
Indices: 33674762--33675078 Score: 363
Period size: 48 Copynumber: 6.6 Consensus size: 47
33674752 ATGAGATTCC
* *
33674762 GTGTAAGACCATGTCTGGGACATGGCATCGAC-ATCCGAGATATGTTCCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATATATG-TCC-A
* * *
33674812 -TATAAGACCATGTATGGGACATGGCATCAGCGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGT-CCA
* *
33674859 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATTTATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGT-CCA
*
33674907 GTGTAAGACCATATCTGGGACATGGCATCGGCGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGT-CCA
* *
33674955 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGT-CCA
* * * * *
33675003 GTGTAAGACCATATCTAGGACATGGCATCGGCGATGACATGTGGATTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATAT-G-TCCA
*
33675052 -TGTAAGACCATGT-TAGGGACATAGCAT
1 GTGTAAGACCATGTCT-GGGACATGGCAT
33675079 TGGTACTTTA
Statistics
Matches: 235, Mismatches: 26, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
47 3 0.01
48 200 0.85
49 29 0.12
50 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTCCA
Found at i:33680201 original size:46 final size:46
Alignment explanation
Indices: 33680151--33680326 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
33680141 TGGTTGAGCA
33680151 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33680197 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
33680242 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33680290 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33680327 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33680307 original size:93 final size:93
Alignment explanation
Indices: 33680148--33680319 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
33680138 GGATGGTTGA
* *
33680148 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33680213 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
33680241 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33680306 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
33680320 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33687775 original size:46 final size:46
Alignment explanation
Indices: 33687725--33687900 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
33687715 TGGTTGAGCA
33687725 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33687771 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
33687816 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33687864 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33687901 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33687881 original size:93 final size:93
Alignment explanation
Indices: 33687722--33687893 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
33687712 GGATGGTTGA
* *
33687722 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33687787 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
33687815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
33687880 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
33687894 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33690156 original size:47 final size:48
Alignment explanation
Indices: 33689991--33690694 Score: 939
Period size: 47 Copynumber: 15.0 Consensus size: 48
33689981 GTTACAACAC
* * * * *
33689991 TCACATTAGTCATTCGGCTTTACCACATATTCATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* * * *
33690039 TCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
33690087 TCACATT---CATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* * *
33690132 TCACATTAGCCATTCGG-TATACCACATATACATATCTCATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
*
33690179 TCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATA-T
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
33690226 TCACATTAGCCATTCGGCTTTACCACATATACATATCA-ACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
*
33690273 TCACATTAGCCATTCGGCTTTACCAC-TATACATATCTCA-ATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACAT--ATATT
*
33690321 TCACATTCGCCATTCGGCTTTACCAC--AT--ATAT-ACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
33690364 TCACATTAGCCATTCGGCTTTA-C-CATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
*
33690410 TCACATTAGCCATTCGGCTTTACCACATATACATATTCTATAC--ATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATA-TC-ACACATATATT
** *
33690458 TCACATTAGCCATTCGGCTTTA-CACATATACATATCTTATATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* ** *
33690505 TCACATTAGCCATTCGGC-TTACCGCATGCACATTTCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* * *
33690552 TCACATTAGCCATTCGGCTTTA-CACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* *
33690599 TCACATTCGCCATTCGGCTTTACCACATATTACATATAACACATATA--
1 TCACATTAGCCATTCGGCTTTACCACATA-TACATATCACACATATATT
33690646 TCACATTAGCCATTCGGCTTTACCACATATACATATCACTACAATATAT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCAC-AC-ATATAT
33690695 ATTTTATCTG
Statistics
Matches: 585, Mismatches: 44, Indels: 53
0.86 0.06 0.08
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 28 0.05
44 2 0.00
45 54 0.09
46 66 0.11
47 253 0.43
48 162 0.28
49 15 0.03
50 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (48 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
Found at i:33690510 original size:373 final size:373
Alignment explanation
Indices: 33689991--33690682 Score: 1049
Period size: 373 Copynumber: 1.9 Consensus size: 373
33689981 GTTACAACAC
* * * * *
33689991 TCACATTAGTCATTCGGCTTTACCACATATTCATATCTCATACATATTTCACATTCGCCATTCGG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATATTTCACATTAGCCATTCGG
* *
33690056 CTTTACGACATATACATATCTCATATATATTTCACATTCATTCGGCTTTACCACATATACATATC
66 CTTTACCACATATACATATCTCATACATATTTCACATTCATTCGGCTTTACCACATATACATATC
* * *
33690121 ACACATATATTTCACATTAGCCATTCGG-TATACCACATATACATATCTCATATATATTTCACAT
131 ACACATATATTTCACATTAGCCATTCGGCT-TACCACATACACATATCACACATATATTTCACAT
*
33690185 TAGCCATTCGGCTTTACCACATCTACATA-TCACACATATATTCACATTAGCCATTCGGCTTTAC
195 TAGCCATTCGGCTTTA-CACATATACATACTCACACATAT-TTCACATTAGCCATTCGGCTTTAC
* *
33690249 CACATA-TACATATCAACATATATTTCACATTAGCCATTCGGCTTTACCAC-TATACATATCTCA
258 CACATATTACATAT-AACACATATATCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
33690312 ATACATATTTCACATTCGCCATTCGGCTTTACCACATATATACACATATATT
322 ATACATATTTCACATTCGCCATTCGGCTTTACCACATATATACACATATATT
*
33690364 TCACATTAGCCATTCGGCTTTA-C-CATATACATATCACACATATATTTCACATTAGCCATTCGG
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATATTTCACATTAGCCATTCGG
33690427 CTTTACCACATATACATAT-TCTATACATATTTCACATTAGCCATTCGGCTTTA-CACATATACA
66 CTTTACCACATATACATATCTC-ATACATATTTCACATT---CATTCGGCTTTACCACATATACA
** * * * *
33690490 TATCTTATATATATTTCACATTAGCCATTCGGCTTACCGCATGCACATTTCACACATATATTTCA
127 TATCACACATATATTTCACATTAGCCATTCGGCTTACCACATACACATATCACACATATATTTCA
* *
33690555 CATTAGCCATTCGGCTTTACACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTT
192 CATTAGCCATTCGGCTTTACACATATACATA-CTCACACATATTTCACATTAGCCATTCGGCTTT
33690620 ACCACATATTACATATAACACATATATCACATTAGCCATTCGGCTTTACCACATATACATATC
256 ACCACATATTACATATAACACATATATCACATTAGCCATTCGGCTTTACCACATATACATATC
33690683 ACTACAATAT
Statistics
Matches: 288, Mismatches: 22, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
370 2 0.01
371 68 0.24
372 12 0.04
373 167 0.58
374 39 0.14
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (373 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCACACACATATTTCACATTAGCCATTCGG
CTTTACCACATATACATATCTCATACATATTTCACATTCATTCGGCTTTACCACATATACATATC
ACACATATATTTCACATTAGCCATTCGGCTTACCACATACACATATCACACATATATTTCACATT
AGCCATTCGGCTTTACACATATACATACTCACACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATTACATATAACACATATATCACATTAGCCATTCGGCTTTACCACATATACATATCTCAATAC
ATATTTCACATTCGCCATTCGGCTTTACCACATATATACACATATATT
Found at i:33699226 original size:48 final size:48
Alignment explanation
Indices: 33699155--33699326 Score: 299
Period size: 48 Copynumber: 3.6 Consensus size: 48
33699145 ATGAGGTTTC
* *
33699155 GTGTAAGACCATGTCTCGGACATGGCGTCGGCGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
*
33699203 GTGTAAGACTATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* *
33699251 GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGGTATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
33699299 GTGTAAGACCATGTCTGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
33699327 TGGTACTTTA
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 118 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
Found at i:33705667 original size:19 final size:20
Alignment explanation
Indices: 33705622--33705663 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
33705612 TTTGCAAAGT
*
33705622 TTGTGAAATTAGGTGATAAGG
1 TTGTGAAATTAGGTGAGAA-G
33705643 TTGTGAAA-TA-GTGAGAAG
1 TTGTGAAATTAGGTGAGAAG
33705661 TTG
1 TTG
33705664 GTGATGCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 4 0.20
19 6 0.30
20 2 0.10
21 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (20 bp):
TTGTGAAATTAGGTGAGAAG
Found at i:33706247 original size:44 final size:45
Alignment explanation
Indices: 33706135--33706253 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 45
33706125 GGATTACTTG
* * *
33706135 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGA
1 TGTGCTAGTGTAAGACATGTCTGGGACACGCATCAGCCTAGACGA
* * * *
33706180 TGATAGCCAGTGTAAGACGTGTCTAGGACACGCATCAG-CTAAGA-GT
1 TG-T-GCTAGTGTAAGACATGTCTGGGACACGCATCAGCCT-AGACGA
33706226 TGTGCTAGTGTAAGACATGTCTGGGACA
1 TGTGCTAGTGTAAGACATGTCTGGGACA
33706254 TGTATCAGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
44 22 0.36
45 3 0.05
46 6 0.10
47 30 0.49
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
TGTGCTAGTGTAAGACATGTCTGGGACACGCATCAGCCTAGACGA
Found at i:33706261 original size:44 final size:45
Alignment explanation
Indices: 33706135--33706353 Score: 147
Period size: 49 Copynumber: 4.7 Consensus size: 45
33706125 GGATTACTTG
* *
33706135 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTAGACGA
* * * * *
33706180 TGATAGCCAGTGTAAGACGTGTCTAGGACACGCATCAG-CTAAGA-GT
1 TG-T-GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCT-AGACGA
* *
33706226 TGTGCTAGTGTAAGACATGTCTGGGACATGTATCAGTACGTATAGACGA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAG--C--CTAGACGA
* * * * * * *
33706275 -GAGCTAGTATAAAACCATGTTTGGGACATGGCGTCAGCCTCGATGA
1 TGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTAGACGA
* *
33706321 TGATAGCCAGTGTAAGACCATGTCCGGGACATG
1 TG-T-GCTAGTGTAAGA-CATGTCTGGGACATG
33706354 GAATCGGCAA
Statistics
Matches: 131, Mismatches: 29, Indels: 25
0.71 0.16 0.14
Matches are distributed among these distances:
44 28 0.21
45 3 0.02
46 11 0.08
47 31 0.24
48 16 0.12
49 37 0.28
50 5 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTAGACGA
Found at i:33712009 original size:23 final size:23
Alignment explanation
Indices: 33711981--33712027 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
33711971 TCCTGATTAA
*
33711981 AGGCTCTTTGTGAGCTTCCCGAT
1 AGGCTCTTTATGAGCTTCCCGAT
33712004 AGGCTCTTTATGAGCTTCCCGAT
1 AGGCTCTTTATGAGCTTCCCGAT
33712027 A
1 A
33712028 ATGCTCGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (23 bp):
AGGCTCTTTATGAGCTTCCCGAT
Found at i:33719947 original size:24 final size:23
Alignment explanation
Indices: 33719882--33719965 Score: 87
Period size: 24 Copynumber: 3.6 Consensus size: 23
33719872 AATTAAAGGC
* * *
33719882 TCTTTGTGAGCTTCCCAATAGGA
1 TCTTTGTGAACTTCCCGATAGGT
* * *
33719905 TCATTATGAGCTTCCCGATATGGT
1 TCTTTGTGAACTTCCCGATA-GGT
33719929 TCTTTGTGAACTTCCCGATAAGGT
1 TCTTTGTGAACTTCCCGAT-AGGT
*
33719953 TCTTAGTGAACTT
1 TCTTTGTGAACTT
33719966 TCTGATTATG
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
23 17 0.33
24 33 0.65
25 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.38
Consensus pattern (23 bp):
TCTTTGTGAACTTCCCGATAGGT
Found at i:33721138 original size:42 final size:42
Alignment explanation
Indices: 33721079--33721194 Score: 214
Period size: 42 Copynumber: 2.8 Consensus size: 42
33721069 AAGGGTAGCG
33721079 ACACAGGCGTGCATCTGAGCCATGTGTGGTACACGGCCTAGA
1 ACACAGGCGTGCATCTGAGCCATGTGTGGTACACGGCCTAGA
* *
33721121 ACACAGGCGTGCGTCTGAGCCATGTGTGGCACACGGCCTAGA
1 ACACAGGCGTGCATCTGAGCCATGTGTGGTACACGGCCTAGA
33721163 ACACAGGCGTGCATCTGAGCCATGTGTGGTAC
1 ACACAGGCGTGCATCTGAGCCATGTGTGGTAC
33721195 CTATGCCTAA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.22, C:0.27, G:0.32, T:0.19
Consensus pattern (42 bp):
ACACAGGCGTGCATCTGAGCCATGTGTGGTACACGGCCTAGA
Found at i:33723136 original size:46 final size:48
Alignment explanation
Indices: 33723034--33723212 Score: 185
Period size: 47 Copynumber: 3.8 Consensus size: 48
33723024 GTGGGTAAGG
* * * *
33723034 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAACT-TACGTCTCGA-
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATC-AT
* *
33723082 GGCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATCAT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAT
* *
33723128 TGCCGATGCCATTTCCCAGACATGGTCTTACACTGGCTCTCATA--AT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAT
*
33723174 GTGGCCGATG-CATGTCCCGGACAT-GTCTTACACTAGCTC
1 -T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
33723213 ACAAACAAAT
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
45 1 0.01
46 39 0.35
47 40 0.36
48 32 0.29
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAT
Found at i:33723197 original size:94 final size:94
Alignment explanation
Indices: 33723034--33723212 Score: 245
Period size: 94 Copynumber: 1.9 Consensus size: 94
33723024 GTGGGTAAGG
* * * *
33723034 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAACTTACGTCTCGAGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTTACATATCGAGGCCGATGCATGTCCCA
33723099 GACATGTCTTACACTAGCTCTCATATCAT
66 GACATGTCTTACACTAGCTCTCATATCAT
* ** *
33723128 TGCCGATGCCATTTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAACT-TACAT-ATCGAGGCCGATGCATGTCC
*
33723191 CGGACATGTCTTACACTAGCTC
64 CAGACATGTCTTACACTAGCTC
33723213 ACAAACAAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
94 72 0.97
95 2 0.03
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAACTTACATATCGAGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCTCTCATATCAT
Found at i:33724995 original size:94 final size:94
Alignment explanation
Indices: 33724829--33725146 Score: 265
Period size: 94 Copynumber: 3.4 Consensus size: 94
33724819 ATTATGTGAG
* *
33724829 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGGTCTAGTGTAGGACGCG
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATAGAGACGAGGTCTAGTGTAAGACGCG
33724894 TCTGGGACATGCATCAGCCATTTTATGAT
66 TCTGGGACATGCATCAGCCATTTTATGAT
* * * ** * *
33724923 AGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGTGTAGAGATGA-GTGCTAGTGTAAGACGT
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATAGAGACGAGGT-CTAGTGTAAGACGC
* * * *
33724987 GTTTGGGACATGCATCAGCC-TCAATGATGGT
65 GTCTGGGACATGCATCAGCCAT--TTTATGAT
* * * * *** **
33725018 AGTCAGTGTAAGA-CGTGTCTGGGACAT-GCATCAGC-TA-AG-CTTCGTACTAGTGTAAGACAT
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATAGAGACGAGGT-CTAGTGTAAGACGC
* * *
33725078 GTCTAGGACATGCATCAG-CACTTATACATGAG
65 GTCTGGGACATGCATCAGCCA-TT-T-TATGAT
* * *
33725110 AGCTAGAGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
33725147 CTCGATGAAG
Statistics
Matches: 179, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
90 1 0.01
91 34 0.19
92 16 0.09
93 21 0.12
94 91 0.51
95 16 0.09
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATAGAGACGAGGTCTAGTGTAAGACGCG
TCTGGGACATGCATCAGCCATTTTATGAT
Found at i:33725087 original size:44 final size:45
Alignment explanation
Indices: 33724973--33725096 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 45
33724963 GAGATGAGTG
* *
33724973 CTAGTGTAAGACGTGTTTGGGACATGCATCAGCCTCAATGATGGTA
1 CTAGTGTAAGACGTGTCTGGGACATGCATCAG-CTCAATGATCGTA
* *
33725019 GTCAGTGTAAGACGTGTCTGGGACATGCATCAGCT-AA-GCTTCGTA
1 CT-AGTGTAAGACGTGTCTGGGACATGCATCAGCTCAATG-ATCGTA
* *
33725064 CTAGTGTAAGACATGTCTAGGACATGCATCAGC
1 CTAGTGTAAGACGTGTCTGGGACATGCATCAGC
33725097 ACTTATACAT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
44 30 0.43
45 7 0.10
46 3 0.04
47 29 0.42
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (45 bp):
CTAGTGTAAGACGTGTCTGGGACATGCATCAGCTCAATGATCGTA
Found at i:33725819 original size:19 final size:19
Alignment explanation
Indices: 33725795--33725833 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
33725785 TGAAATGATC
33725795 TTGTGTAGGTTGTGCAAAA
1 TTGTGTAGGTTGTGCAAAA
33725814 TTGTGTAGGTTGTGCAAAA
1 TTGTGTAGGTTGTGCAAAA
33725833 T
1 T
33725834 GGCTTGGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.31, T:0.38
Consensus pattern (19 bp):
TTGTGTAGGTTGTGCAAAA
Found at i:33732020 original size:10 final size:10
Alignment explanation
Indices: 33732007--33732103 Score: 55
Period size: 10 Copynumber: 10.1 Consensus size: 10
33731997 CTTTATGAAA
33732007 TTTTAATAAT
1 TTTTAATAAT
33732017 TTTT-A-AAT
1 TTTTAATAAT
* *
33732025 TTTAAATACT
1 TTTTAATAAT
33732035 TTTTAAT--T
1 TTTTAATAAT
33732043 TTTTAA-AAT
1 TTTTAATAAT
*
33732052 TTTTTATAAGT
1 TTTTAATAA-T
* *
33732063 TTTTATTTAT
1 TTTTAATAAT
*
33732073 TTTT-TTAACT
1 TTTTAATAA-T
*
33732083 TTTTTA-AAT
1 TTTTAATAAT
33732092 TTTTAAATAAT
1 TTTT-AATAAT
33732103 T
1 T
33732104 GATGGCGTGG
Statistics
Matches: 67, Mismatches: 10, Indels: 19
0.70 0.10 0.20
Matches are distributed among these distances:
8 13 0.19
9 16 0.24
10 27 0.40
11 11 0.16
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:33732037 original size:18 final size:17
Alignment explanation
Indices: 33732004--33732055 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
33731994 ACTCTTTATG
33732004 AAATTTTAATAATTTTT
1 AAATTTTAATAATTTTT
*
33732021 AAATTTTAAATACTTTTT
1 AAATTTT-AATAATTTTT
*
33732039 AATTTTTTAA-AATTTTT
1 AA-ATTTTAATAATTTTT
33732056 TATAAGTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 13 0.43
18 13 0.43
19 4 0.13
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
AAATTTTAATAATTTTT
Found at i:33734328 original size:38 final size:37
Alignment explanation
Indices: 33734275--33734352 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 37
33734265 TTATTTTTAT
*
33734275 AAATAAAATAATTATTAATTAAAAATAAAAGAACTTGA
1 AAATAAAATAATTATTAATTAAAAATAAAAAAACTT-A
* *
33734313 AAATAATATATTTATTAATTAAAAATAAAAAAACTTA
1 AAATAAAATAATTATTAATTAAAAATAAAAAAACTTA
33734350 AAA
1 AAA
33734353 CAACATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
37 4 0.11
38 33 0.89
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (37 bp):
AAATAAAATAATTATTAATTAAAAATAAAAAAACTTA
Found at i:33734571 original size:141 final size:139
Alignment explanation
Indices: 33734325--33734580 Score: 320
Period size: 141 Copynumber: 1.8 Consensus size: 139
33734315 ATAATATATT
**
33734325 TATTAATTAAAAATAAAAAAACTTAAAACAACATGAAATAAAAAATACAAATATGCTTAGAAGAG
1 TATTAATTAAAAATAAAAAAACTTAAAACAACATGAAATAAAAAATACAAATATGAGTAGAAGAG
* ** * *
33734390 GAATTGAACATGAAACTCAAGAATGAAATCATTATTATTTAACCTTTTAATAAAAGGAGTTAATA
66 GAATTAAACATGAAACTCAAGAACAAAATCATTATCATTTAACCATTTAATAAAAGGAGTTAATA
33734455 TGTTAAAAA
131 TGTTAAAAA
* ** * * *
33734464 TATTAATTAAAAATAAAAAAAAGCTTGAAACAATGTGAAATAAAAAGTACAAATATGAGTAGGAT
1 TATTAATTAAAAAT-AAAAAAA-CTTAAAACAACATGAAATAAAAAATACAAATATGAGTAGAAG
*
33734529 AGGAATTAAACCT-AAGACTCAAGAACAAAA-CTATTGA-CATTTAACCATTTAA
64 AGGAATTAAACATGAA-ACTCAAGAACAAAATC-ATT-ATCATTTAACCATTTAA
33734581 CCAAAAGAGA
Statistics
Matches: 98, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
139 14 0.14
140 10 0.10
141 73 0.74
142 1 0.01
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.27
Consensus pattern (139 bp):
TATTAATTAAAAATAAAAAAACTTAAAACAACATGAAATAAAAAATACAAATATGAGTAGAAGAG
GAATTAAACATGAAACTCAAGAACAAAATCATTATCATTTAACCATTTAATAAAAGGAGTTAATA
TGTTAAAAA
Found at i:33734922 original size:22 final size:21
Alignment explanation
Indices: 33734897--33734947 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
33734887 GTATAAATCA
33734897 ATTTAAAATAATATATTATTAT
1 ATTTAAAATAATATATTATT-T
* * *
33734919 ATTTTAAATTATATTTTATTT
1 ATTTAAAATAATATATTATTT
33734940 -TTTAAAAT
1 ATTTAAAAT
33734948 TATTTATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 7 0.28
21 1 0.04
22 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTAAAATAATATATTATTT
Found at i:33734933 original size:20 final size:21
Alignment explanation
Indices: 33734898--33734954 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
33734888 TATAAATCAA
33734898 TTTAAAATAATATATTATTATAT
1 TTTAAAAT--TATATTATTATAT
*
33734921 TTT-AAATTATATT-TTATTT
1 TTTAAAATTATATTATTATAT
33734940 TTTAAAATTAT-TTAT
1 TTTAAAATTATATTAT
33734955 AATTGAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 10 0.32
20 14 0.45
22 4 0.13
23 3 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTAAAATTATATTATTATAT
Found at i:33734951 original size:18 final size:19
Alignment explanation
Indices: 33734906--33734952 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
33734896 AATTTAAAAT
33734906 AATATATTATTATATTTTAA
1 AATATATT-TTATATTTTAA
* *
33734926 ATTATATTTTATTTTTTAA
1 AATATATTTTATATTTTAA
33734945 AAT-TATTT
1 AATATATTT
33734953 ATAATTGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 5 0.21
19 12 0.50
20 7 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
AATATATTTTATATTTTAA
Found at i:33735325 original size:69 final size:70
Alignment explanation
Indices: 33735235--33735407 Score: 219
Period size: 69 Copynumber: 2.5 Consensus size: 70
33735225 AGTGGTAATA
* * * * * * *
33735235 TCTTTATTATTTTTATTAAAAAGTTATTTTTAATCCT-ACATTGATTAGAGAATACTCTTATAGT
1 TCTTCATTATTTTCATTAAAAAGTTAATTTTAATCCTCACATTAATTAGAAAATACTCTCATAGC
33735299 TCACT
66 TCACT
33735304 TCTTCATTATTTTCATTAAAAAGTTAATTTTAAT-CTCACATTAATTAGAAAATACTCTCATAGC
1 TCTTCATTATTTTCATTAAAAAGTTAATTTTAATCCTCACATTAATTAGAAAATACTCTCATAGC
*
33735368 TCTCT
66 TCACT
* *
33735373 TATTCA-TATTTTTCAGTAAAAA-TTAATTTTAATCC
1 TCTTCATTA-TTTTCATTAAAAAGTTAATTTTAATCC
33735408 CTTAAAAAGT
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
68 15 0.16
69 76 0.84
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.47
Consensus pattern (70 bp):
TCTTCATTATTTTCATTAAAAAGTTAATTTTAATCCTCACATTAATTAGAAAATACTCTCATAGC
TCACT
Found at i:33735414 original size:21 final size:22
Alignment explanation
Indices: 33735389--33735430 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
33735379 TATTTTTCAG
33735389 TAAAAA-TTAATTTTAATCCCT
1 TAAAAAGTTAATTTTAATCCCT
33735410 TAAAAAGTTAATTTTAATCCC
1 TAAAAAGTTAATTTTAATCCC
33735431 ACATTGGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.40
Consensus pattern (22 bp):
TAAAAAGTTAATTTTAATCCCT
Found at i:33735494 original size:81 final size:81
Alignment explanation
Indices: 33735412--33735616 Score: 297
Period size: 81 Copynumber: 2.5 Consensus size: 81
33735402 TAATCCCTTA
* * *
33735412 AAAAG-TTAATTTTAATCCCACATTGGCTAGAGAACACTCTCATGCTTATAATAAGTCTCAGTTT
1 AAAAGATTAATTTTAATCCCACATTGACTAGAGAACACTCTCATGCTTACAATAAGTCTCAATTT
33735476 CTTCACTATTTTCATT
66 CTTCACTATTTTCATT
* * * * *
33735492 AAAAGATTAATTTTAATTCCACATTAACTATG-GAACCCTCTCATGCTTACAATTAGTGTCAATT
1 AAAAGATTAATTTTAATCCCACATTGACTA-GAGAACACTCTCATGCTTACAATAAGTCTCAATT
33735556 TCTTCACTATTTTCATT
65 TCTTCACTATTTTCATT
* *
33735573 AAAAGATTAATTTTAATCTCACATTGACTAGAGAACAATCTCAT
1 AAAAGATTAATTTTAATCCCACATTGACTAGAGAACACTCTCAT
33735617 ATCTCACATT
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
80 6 0.06
81 102 0.94
82 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (81 bp):
AAAAGATTAATTTTAATCCCACATTGACTAGAGAACACTCTCATGCTTACAATAAGTCTCAATTT
CTTCACTATTTTCATT
Found at i:33735717 original size:94 final size:94
Alignment explanation
Indices: 33735546--33735717 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 94
33735536 GCTTACAATT
* * *
33735546 AGTGTCAATTTCTTCACTATTTTCATTAAAAGATTAATTTTAATCTCACATTGACTAGAGAACAA
1 AGTGACAATTTCTTCACTATTTTCATTAAAAGATTAATTTTAATCCCACATTGACTAGAAAACAA
*
33735611 TCTCATATCTCACATTTACCTTATAAATA
66 TCTCATAGCTCACATTTACCTTATAAATA
** * *
33735640 AGTGACAATTTCTTTGCTATTTTCATTAAAA-AGTTAATTTTAATCCCATATTGACTAGAAAATA
1 AGTGACAATTTCTTCACTATTTTCATTAAAAGA-TTAATTTTAATCCCACATTGACTAGAAAACA
*
33735704 CTCTCATAGCTCAC
65 ATCTCATAGCTCAC
33735718 TTCTTGTAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
93 1 0.01
94 67 0.99
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (94 bp):
AGTGACAATTTCTTCACTATTTTCATTAAAAGATTAATTTTAATCCCACATTGACTAGAAAACAA
TCTCATAGCTCACATTTACCTTATAAATA
Found at i:33737051 original size:29 final size:27
Alignment explanation
Indices: 33736951--33737144 Score: 146
Period size: 28 Copynumber: 7.1 Consensus size: 27
33736941 CGATCGTGTG
33736951 TTCCCTT-TTTT-TAGATTTTACAGTT
1 TTCCCTTATTTTCTAGATTTTACAGTT
* *
33736976 TTGCCCCTACTTTTC-AGATTTTATAGTT
1 TT-CCCTTA-TTTTCTAGATTTTACAGTT
** *
33737004 TAGACCTTATTTTCCAGATTTTACAGTTTT
1 T-TCCCTTATTTTCTAGATTTTACAG--TT
*
33737034 TTTCCTTATTTTCTAGA-TTTACAGTT
1 TTCCCTTATTTTCTAGATTTTACAGTT
* * *
33737060 TTCCCCTATTTTCTAAATTTTACAACTT
1 TTCCCTTATTTTCTAGATTTTAC-AGTT
* * *
33737088 TTCCACTAATTTT-TAAATTTTATAGTT
1 TTCC-CTTATTTTCTAGATTTTACAGTT
* * *
33737115 TTACCCTTATTTTTTAAATTTTATAGTT
1 TT-CCCTTATTTTCTAGATTTTACAGTT
33737143 TT
1 TT
33737145 GCCCAAAATT
Statistics
Matches: 138, Mismatches: 18, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.01
26 20 0.14
27 22 0.16
28 72 0.52
29 19 0.14
30 3 0.02
ACGTcount: A:0.22, C:0.16, G:0.06, T:0.55
Consensus pattern (27 bp):
TTCCCTTATTTTCTAGATTTTACAGTT
Found at i:33737156 original size:28 final size:28
Alignment explanation
Indices: 33737095--33737156 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
33737085 CTTTTCCACT
**
33737095 AATTTTTAAATTTTATAGTTTTACCCTT
1 AATTTTTAAATTTTATAGTTTTACCCAA
* *
33737123 ATTTTTTAAATTTTATAGTTTTGCCCAA
1 AATTTTTAAATTTTATAGTTTTACCCAA
33737151 AATTTT
1 AATTTT
33737157 ATATATTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.05, T:0.56
Consensus pattern (28 bp):
AATTTTTAAATTTTATAGTTTTACCCAA
Found at i:33738861 original size:48 final size:48
Alignment explanation
Indices: 33738797--33739405 Score: 795
Period size: 48 Copynumber: 12.7 Consensus size: 48
33738787 TGTGTAATCA
* * * * * *
33738797 TGTAATACCATATCTGGGATATGGCATCAGCATCGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* * * *
33738845 TGTAAGACTATGTCTGGGACATGGCATCGACATTGTTACGTAAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* * * *
33738893 TGTAAGACCATGTCTAGAACATGGCATCGCCATCGTTACGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
*
33738941 TGTAAGACCATGTCTGGGACATGGCATCGGTATTGTTACGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* *
33738989 TGTAAGACTATGTCTGGAACATGGCATCGGCATTGTTACGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* * *
33739037 TGTAAGACCATCTCTGGGACATGGCATCAGCATTGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* ** * * * *
33739085 TGTAAGACCATCTCTAAGACATGGCATCAGCATTGTTATGTAAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* ** **
33739133 TGTAAGACCATGTCTGGGACATGGCATAGAAATCATTACGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* * *
33739181 TGTAAGACCATGTCTGGAACATGGCATCGGCGTTGTAACGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
*
33739229 TGTAAGACAATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* * * *
33739277 AGTAAGACCATGTTTGGGACATGGCATCGGCATCGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* * * * *
33739325 TGTAAGACCATGTTTGGAACATGGCATCGACATCGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
* *
33739373 CGTAAGACCATGTCTGGGACATGGCATTGGCAT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAT
33739406 GGGGCATTGT
Statistics
Matches: 490, Mismatches: 71, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 490 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCAG
Found at i:33741183 original size:43 final size:43
Alignment explanation
Indices: 33741058--33741200 Score: 123
Period size: 43 Copynumber: 3.3 Consensus size: 43
33741048 CAATTTGTGT
* * * *
33741058 TTTCGTGTAAGA-CTACGTCTGGGATATTGGCATCGACT-TATGA
1 TTTCGTGTAAGACCT-TGTCTGGGACAGTGGCATCGA-TATTTGA
* ** * *
33741101 TTTATGTGTAAGACAATGTTTTGGAC-GTTGGCATC-ATATTTGA
1 TTT-CGTGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGA
33741144 TTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGA
1 TTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGA
* *
33741187 TTACATGTAAGACC
1 TTTCGTGTAAGACC
33741201 ACGTCGGGAT
Statistics
Matches: 78, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
42 25 0.32
43 32 0.41
44 21 0.27
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (43 bp):
TTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGA
Found at i:33741217 original size:42 final size:43
Alignment explanation
Indices: 33741123--33741218 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
33741113 ACAATGTTTT
* * **
33741123 GGAC-GTTGGCATCATATTTGATTTCGTGTAAGACCTTGTCTG
1 GGACAGTTGGCATCATATTTGATTACATGTAAGACCACGTCTG
33741165 GGACAG-TGGCATCGATATTTGATTACATGTAAGACCACGTC-G
1 GGACAGTTGGCATC-ATATTTGATTACATGTAAGACCACGTCTG
*
33741207 GGA-TGTTGGCAT
1 GGACAGTTGGCAT
33741219 TATACGAGCT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 21 0.46
43 24 0.52
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
GGACAGTTGGCATCATATTTGATTACATGTAAGACCACGTCTG
Found at i:33743335 original size:45 final size:45
Alignment explanation
Indices: 33743284--33743373 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
33743274 GCATGTTAAT
33743284 AAATTTTTTATTATTTACATACCTACTTACTAAGCTATATGCTTA
1 AAATTTTTTATTATTTACATACCTACTTACTAAGCTATATGCTTA
33743329 AAATTTTTTATTATTTACATACCTACTTACTAAGCTATATGCTTA
1 AAATTTTTTATTATTTACATACCTACTTACTAAGCTATATGCTTA
33743374 CTCTCTCTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.33, C:0.16, G:0.04, T:0.47
Consensus pattern (45 bp):
AAATTTTTTATTATTTACATACCTACTTACTAAGCTATATGCTTA
Found at i:33745029 original size:36 final size:37
Alignment explanation
Indices: 33744989--33745067 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 37
33744979 TGGTTGGACC
* * *
33744989 ATGGCAAAGT-ATGGA-ATGTAAGACCATAGCTGGGTT
1 ATGGCAAAGTAAT-GACATGTAAGAACATAACTGGGCT
**
33745025 ATGGCATCGTAATGACATGTAAGAACATAACTGGGCT
1 ATGGCAAAGTAATGACATGTAAGAACATAACTGGGCT
33745062 ATGGCA
1 ATGGCA
33745068 TTGTGATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
36 10 0.28
37 26 0.72
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (37 bp):
ATGGCAAAGTAATGACATGTAAGAACATAACTGGGCT
Found at i:33748513 original size:33 final size:33
Alignment explanation
Indices: 33748465--33748528 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
33748455 ATATGGCATC
* *
33748465 GGCATCGTTATGTGAGCCAGTGTAAGACCATTT
1 GGCATCGTTACGTGAGCAAGTGTAAGACCATTT
*
33748498 GGCATTGTTACGTGAGCAAGTGTAAGACCAT
1 GGCATCGTTACGTGAGCAAGTGTAAGACCAT
33748529 GTCTGAGACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (33 bp):
GGCATCGTTACGTGAGCAAGTGTAAGACCATTT
Found at i:33748587 original size:48 final size:48
Alignment explanation
Indices: 33748504--33748736 Score: 324
Period size: 48 Copynumber: 4.9 Consensus size: 48
33748494 ATTTGGCATT
* * *
33748504 GTTACGTGAGCAAGTGTAAGACCATGTCTGAGACATGGCATCGACATC
1 GTTACGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATC
* *
33748552 GTTATGTGAGCCAGTGTAA-AGCCATGTTTGGGACATGGCATCGACATT
1 GTTACGTGAGCCAGTGTAAGA-CCATGTTTGGGACATGGCATCGACATC
* * *
33748600 GTTACGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATC
1 GTTACGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATC
* * * *
33748648 GTTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCATT
1 GTTACGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATC
* *
33748696 GTTACATGAGCCAGTGTAAGACCATGTTTGGTACATGGCAT
1 GTTACGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
33748737 GTAACACCTC
Statistics
Matches: 165, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 163 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
GTTACGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATC
Done.