Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 114 of 425
Found at i:33748664 original size:96 final size:96
Alignment explanation
Indices: 33748500--33748736 Score: 379
Period size: 96 Copynumber: 2.5 Consensus size: 96
33748490 GACCATTTGG
*
33748500 CATTGTTACGTGAGCAAGTGTAAGACCATGTCT-GAGACATGGCATCGACATCGTTATGTGAGCC
1 CATTGTTACGTGAGCCAGTGTAAGACCATGTCTGGA-ACATGGCATCGACATCGTTATGTGAGCC
33748564 AGTGTAA-AGCCATGTTTGGGACATGGCATCGA
65 AGTGTAAGA-CCATGTTTGGGACATGGCATCGA
*
33748596 CATTGTTACGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATCGTTATGTGAGCCA
1 CATTGTTACGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACATCGTTATGTGAGCCA
* *
33748661 GTGTAAGACCATGTTTGGGACATGGCATTGG
66 GTGTAAGACCATGTTTGGGACATGGCATCGA
* * *
33748692 CATTGTTACATGAGCCAGTGTAAGACCATGTTTGGTACATGGCAT
1 CATTGTTACGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCAT
33748737 GTAACACCTC
Statistics
Matches: 132, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
96 129 0.98
97 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (96 bp):
CATTGTTACGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACATCGTTATGTGAGCCA
GTGTAAGACCATGTTTGGGACATGGCATCGA
Found at i:33750153 original size:34 final size:34
Alignment explanation
Indices: 33750106--33750174 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
33750096 GAATGACCAT
*
33750106 TCCCTATATGCACTCCCGCGAACCTCACATTTTA
1 TCCCTATACGCACTCCCGCGAACCTCACATTTTA
33750140 TCCCTATACGCACTCCCGCGAACCTCACATTTTA
1 TCCCTATACGCACTCCCGCGAACCTCACATTTTA
33750174 T
1 T
33750175 GGTGGGATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.23, C:0.39, G:0.09, T:0.29
Consensus pattern (34 bp):
TCCCTATACGCACTCCCGCGAACCTCACATTTTA
Found at i:33759394 original size:40 final size:40
Alignment explanation
Indices: 33759350--33759574 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
33759340 GCTACTCGTT
* * *
33759350 CAAATACCTTCGGGACATAG-CCTGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGTCC-GGATT-TAGTAACTCGCA
33759390 CAAATGCCTTCGGGACTTA-TCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGT-CCGGATTTAGTAACTCGCA
**
33759430 CAAATGCCTTCGGCTCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
33759470 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCA
* * *
33759510 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAAC-TCGCA
*
33759551 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGTCCGGA
33759575 CATCATTCGA
Statistics
Matches: 168, Mismatches: 11, Indels: 13
0.88 0.06 0.07
Matches are distributed among these distances:
39 11 0.07
40 144 0.86
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:33759468 original size:80 final size:79
Alignment explanation
Indices: 33759376--33759574 Score: 294
Period size: 80 Copynumber: 2.5 Consensus size: 79
33759366 ATAGCCTGGT
*
33759376 TATAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTC
1 TATAGTAACTCGCACAAATGCCTTC-GGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTC
*
33759441 GGCTCTTAGTCCGGA
65 GGATCTTAGTCCGGA
*
33759456 TTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT-CCGGATTTAGTAACTCGCACAAATGCCTT
1 TATAGTAACTCGCACAAATGCCTTCGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTT
33759520 CGGATCTTAGTCCGGA
64 CGGATCTTAGTCCGGA
* * *
33759536 TATAGTCACTTAGCACAAA-GCCTTCGGACTTAGCCCGGA
1 TATAGTAAC-TCGCACAAATGCCTTCGGACTTATCCCGGA
33759575 CATCATTCGA
Statistics
Matches: 108, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
79 12 0.11
80 87 0.81
81 9 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (79 bp):
TATAGTAACTCGCACAAATGCCTTCGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCG
GATCTTAGTCCGGA
Found at i:33761657 original size:39 final size:39
Alignment explanation
Indices: 33761539--33761670 Score: 194
Period size: 39 Copynumber: 3.4 Consensus size: 39
33761529 TGCATGGTAT
* *
33761539 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTACGC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTTATGC
* *
33761578 TGGAAATATATCCGGACTTCAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTTATGC
* *
33761617 TGGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTTA-TGC
33761656 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
33761671 GCTAAGTCCC
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
38 2 0.02
39 84 0.98
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTAAAGTCCGCAGGCTTTATGC
Found at i:33761695 original size:39 final size:39
Alignment explanation
Indices: 33761663--33761907 Score: 346
Period size: 39 Copynumber: 6.3 Consensus size: 39
33761653 TGCTGGAAAA
*
33761663 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * * *
33761702 ATATCCGGACCAAGTCCTGAAGGCATTCATGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * * * *
33761741 ATATCTGGGCGAAATCCTGAAGGCATTCGTGCTAGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* **
33761780 ATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
33761819 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* *
33761858 ATATCCGGGCTAAGTCCTGTAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
33761897 ATATCCGGGCT
1 ATATCCGGGCT
33761908 TAAAGTACCG
Statistics
Matches: 182, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 182 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:33761696 original size:78 final size:76
Alignment explanation
Indices: 33761539--33761907 Score: 260
Period size: 78 Copynumber: 4.7 Consensus size: 76
33761529 TGCATGGTAT
* * * * *
33761539 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTACGCTGGAAATATATCCGGACTTCAAGT-C
1 TGGAAATATATCCGGAC-T-AAGTCCGAAGGCATTATGCTGGAAATATATCCGGGC-T-AAGTCC
* **
33761603 CGCAGGC-TTTATGC
62 CGAAGGCATTCGTGC
* * *
33761617 TGGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCC
1 TGGAAATATATCCGGAC-T-AAGTCCGAAGGCATTA-TGCTGGAAATATATCCGGGCTAAGTCCC
33761681 GAAGGCATTCGTGC
63 GAAGGCATTCGTGC
*** * * * * * * *
33761695 TGGTGTTATATCCGGACCAAGTCCTGAAGGCATTCATGCTGGTATTATATCTGGGCGAAATCCTG
1 TGGAAATATATCCGGACTAAGTCC-GAAGGCATT-ATGCTGGAAATATATCCGGGCTAAGTCCCG
33761760 AAGGCATTCGTGC
64 AAGGCATTCGTGC
* * * * ***
33761773 TAGTATTATATCCAGG-CTAAGTCCCGAAGGCATTCGTGCTGGTGCTATATCCGGGCTAAGTCCC
1 TGGAAATATATCC-GGACTAAGT-CCGAAGGCATT-ATGCTGGAAATATATCCGGGCTAAGTCCC
33761837 GAAGGCATTCGTGC
63 GAAGGCATTCGTGC
*** * * * * *
33761851 TGGTGTTATATCCGGGCTAAGTCCTGTAGGCATTCGTGCTGGTATTATATCCGGGCT
1 TGGAAATATATCCGGACTAAGTCC-GAAGGCATT-ATGCTGGAAATATATCCGGGCT
33761908 TAAAGTACCG
Statistics
Matches: 244, Mismatches: 37, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
76 10 0.04
77 19 0.08
78 210 0.86
79 5 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (76 bp):
TGGAAATATATCCGGACTAAGTCCGAAGGCATTATGCTGGAAATATATCCGGGCTAAGTCCCGAA
GGCATTCGTGC
Found at i:33761745 original size:117 final size:116
Alignment explanation
Indices: 33761584--33761883 Score: 309
Period size: 117 Copynumber: 2.6 Consensus size: 116
33761574 ACGCTGGAAA
* * * * * *
33761584 TATATCCGGACTTCAAGTCCGCAGGC-TTTATGCTGGAAATATATCCGGACTTAAAGTCC-GCAG
1 TATATCCGGAC--CAAGTCCGAAGGCATTCATGCTGGTATTATATCCGGAC-GAAA-TCCTGAAG
* * *
33761647 GC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
62 GCATAAGTGCTAGAAAAATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGC
* *
33761701 TATATCCGGACCAAGTCCTGAAGGCATTCATGCTGGTATTATATCTGGGCGAAATCCTGAAGGCA
1 TATATCCGGACCAAGTCC-GAAGGCATTCATGCTGGTATTATATCCGGACGAAATCCTGAAGGCA
** * **
33761766 TTCGTGCTAGTATTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGC
65 TAAGTGCTAGAAAAATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGC
* * * * * * * *
33761818 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGTAGGCA
1 TATATCCGGACCAAGT-CCGAAGGCATTCATGCTGGTATTATATCCGGACGAAATCCTGAAGGCA
33761883 T
65 T
33761884 TCGTGCTGGT
Statistics
Matches: 154, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
115 10 0.06
116 13 0.08
117 129 0.84
118 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (116 bp):
TATATCCGGACCAAGTCCGAAGGCATTCATGCTGGTATTATATCCGGACGAAATCCTGAAGGCAT
AAGTGCTAGAAAAATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGC
Found at i:33761884 original size:117 final size:117
Alignment explanation
Indices: 33761663--33761907 Score: 382
Period size: 117 Copynumber: 2.1 Consensus size: 117
33761653 TGCTGGAAAA
* *
33761663 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGACCAAGTCCTGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCTATATCCGGACCAAGTCCCGAAGGCAT
*
33761728 TCATGCTGGTATTATATCTGGGCGAAATCCTGAAGGCATTCGTGCTAGTATT
66 TCATGCTGGTATTATATCCGGGCGAAATCCTGAAGGCATTCGTGCTAGTATT
* * *
33761780 ATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCTATATCCGGACCAAGTCCCGAAGGCAT
* * * * * *
33761845 TCGTGCTGGTGTTATATCCGGGCTAAGTCCTGTAGGCATTCGTGCTGGTATT
66 TCATGCTGGTATTATATCCGGGCGAAATCCTGAAGGCATTCGTGCTAGTATT
33761897 ATATCCGGGCT
1 ATATCCGGGCT
33761908 TAAAGTACCG
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (117 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCTATATCCGGACCAAGTCCCGAAGGCAT
TCATGCTGGTATTATATCCGGGCGAAATCCTGAAGGCATTCGTGCTAGTATT
Found at i:33767121 original size:39 final size:39
Alignment explanation
Indices: 33767065--33767196 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
33767055 TGCATGGTAT
33767065 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* *
33767104 TGGAAATATATCTGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * *
33767143 TGGAAATATATCCGGACTTAAAGTCCGCAGGC-TAACTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
33767182 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
33767197 GCTAAGTCCC
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
38 2 0.02
39 84 0.98
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:33767222 original size:39 final size:39
Alignment explanation
Indices: 33767189--33767443 Score: 366
Period size: 39 Copynumber: 6.5 Consensus size: 39
33767179 TGCTGGAAAA
* *
33767189 ATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * * *
33767228 ATGTCCGGGCCAAGTCCTGAAGGCATTCGTGTTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
33767267 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
33767306 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* *
33767345 ATATCCGGGCTAAGTCCCGAAGGCATTCCTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* * *
33767384 ATATCCAGGCTATGTCCGGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
33767423 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
33767444 CATGCTTTGT
Statistics
Matches: 192, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 185 0.96
40 1 0.01
41 6 0.03
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:33767537 original size:17 final size:17
Alignment explanation
Indices: 33767517--33767551 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
33767507 GTAAGATTAT
33767517 GATTTTGAATGTTCGTA
1 GATTTTGAATGTTCGTA
33767534 GATTTTGAATGTTCGTA
1 GATTTTGAATGTTCGTA
33767551 G
1 G
33767552 TAAACTACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.46
Consensus pattern (17 bp):
GATTTTGAATGTTCGTA
Found at i:33774833 original size:40 final size:40
Alignment explanation
Indices: 33774771--33774988 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
33774761 AAGCCAAGTA
* * * *
33774771 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
33774810 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33774850 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
33774890 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
33774930 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGTAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
33774970 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33774989 TTATCATCCA
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 150 0.92
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33775881 original size:18 final size:18
Alignment explanation
Indices: 33775858--33775892 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
33775848 TAAATCAAAC
33775858 ACTAACATTTTGCACTTA
1 ACTAACATTTTGCACTTA
33775876 ACTAACATTTTGCACTT
1 ACTAACATTTTGCACTT
33775893 CACCTTACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (18 bp):
ACTAACATTTTGCACTTA
Found at i:33784276 original size:29 final size:29
Alignment explanation
Indices: 33784244--33784338 Score: 102
Period size: 29 Copynumber: 3.3 Consensus size: 29
33784234 CACGCACACT
* *
33784244 TAGTGCCATGTGATTTAAGCTCGCAAACA
1 TAGTGCCATATAATTTAAGCTCGCAAACA
* *
33784273 TAGTGCCATATAATTTAAGCTCGCACACT
1 TAGTGCCATATAATTTAAGCTCGCAAACA
* * * *
33784302 TAGTGCCATA-CATTTCAAGCTTGCACACT
1 TAGTGCCATATAATTT-AAGCTCGCAAACA
33784331 TAGTGCCA
1 TAGTGCCA
33784339 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.07
29 55 0.93
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (29 bp):
TAGTGCCATATAATTTAAGCTCGCAAACA
Found at i:33786561 original size:40 final size:40
Alignment explanation
Indices: 33786499--33786636 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
33786489 AAGCCAAGTA
* * *
33786499 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCTCAAATG
* *
33786538 CCTTCGGGACATAGCCCGGATATAG-TAACTCG-TACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCT-CAAATG
* *
33786578 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCTCAAATG
33786618 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33786637 TTATCATCCA
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
39 13 0.15
40 73 0.85
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCTCAAATG
Found at i:33790643 original size:52 final size:52
Alignment explanation
Indices: 33790581--33790684 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
33790571 CCAACTTCAA
33790581 TGGCTTATACAAAATAATTTGGTTAAATAATGTAACCAATATTTTTAAACCT
1 TGGCTTATACAAAATAATTTGGTTAAATAATGTAACCAATATTTTTAAACCT
33790633 TGGCTTATACAAAATAATTTGGTTAAATAATGTAACCAATATTTTTAAACCT
1 TGGCTTATACAAAATAATTTGGTTAAATAATGTAACCAATATTTTTAAACCT
33790685 AGGCAATTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (52 bp):
TGGCTTATACAAAATAATTTGGTTAAATAATGTAACCAATATTTTTAAACCT
Found at i:33790673 original size:25 final size:25
Alignment explanation
Indices: 33790593--33790673 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
33790583 GCTTATACAA
33790593 AATAATTTGGTTAAATAATGTAACC
1 AATAATTTGGTTAAATAATGTAACC
*** *
33790618 AAT-ATTT--TTAAACCTTGGCTTATACAA
1 AATAATTTGGTTAAATAAT-G--TA-AC-C
33790645 AATAATTTGGTTAAATAATGTAACC
1 AATAATTTGGTTAAATAATGTAACC
33790670 AATA
1 AATA
33790674 TTTTTAAACC
Statistics
Matches: 40, Mismatches: 8, Indels: 16
0.62 0.12 0.25
Matches are distributed among these distances:
22 6 0.15
23 1 0.03
24 4 0.10
25 9 0.22
26 4 0.10
27 5 0.12
28 4 0.10
29 1 0.03
30 6 0.15
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (25 bp):
AATAATTTGGTTAAATAATGTAACC
Found at i:33802594 original size:23 final size:24
Alignment explanation
Indices: 33802519--33802614 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
33802509 GCTTTATCAT
33802519 ATAACTGGAGGCAT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
33802544 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33802568 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33802591 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33802615 CACTTCCTCC
Statistics
Matches: 67, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
23 23 0.34
24 32 0.48
25 12 0.18
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:33802594 original size:47 final size:49
Alignment explanation
Indices: 33802519--33802614 Score: 153
Period size: 47 Copynumber: 2.0 Consensus size: 49
33802509 GCTTTATCAT
33802519 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
*
33802568 ATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
33802615 CACTTCCTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
47 27 0.60
48 6 0.13
49 12 0.27
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
Found at i:33802688 original size:20 final size:20
Alignment explanation
Indices: 33802663--33802729 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
33802653 TTATGATTAC
*
33802663 ATCATGTGCATATCATAAAT
1 ATCATGTGCATATCATACAT
33802683 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
33802703 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
33802723 ACCATGT
1 ATCATGT
33802730 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:33802798 original size:25 final size:25
Alignment explanation
Indices: 33802766--33802813 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
33802756 ATACATAAAC
* * *
33802766 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
33802791 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
33802814 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:33810384 original size:31 final size:31
Alignment explanation
Indices: 33810346--33810409 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
33810336 CCTTTTCATA
33810346 TTTCATATTTCATAAC-ACTGGGCCGAAGCCT
1 TTTCATATTTCAT-ACTACTGGGCCGAAGCCT
33810377 TTTCATATTTCATACTACTGGGCCGAAGCCT
1 TTTCATATTTCATACTACTGGGCCGAAGCCT
33810408 TT
1 TT
33810410 ACTGTAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 2 0.06
31 30 0.94
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTTCATACTACTGGGCCGAAGCCT
Found at i:33810654 original size:24 final size:24
Alignment explanation
Indices: 33810603--33810698 Score: 133
Period size: 24 Copynumber: 4.0 Consensus size: 24
33810593 GCTTTATCAT
*
33810603 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
33810628 ATAACAGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33810652 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33810675 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
33810699 CACTTCCTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:33810678 original size:23 final size:23
Alignment explanation
Indices: 33810624--33810696 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
33810614 CCTAGCCTCT
* *
33810624 TTTAATAACAGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
33810647 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
33810671 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
33810694 TTT
1 TTT
33810697 TACACTTCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:33810772 original size:20 final size:20
Alignment explanation
Indices: 33810747--33810813 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
33810737 TTATGATTAC
33810747 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
33810767 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
33810787 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
33810807 ACCATGT
1 ATCATGT
33810814 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:33810778 original size:11 final size:11
Alignment explanation
Indices: 33810747--33810802 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
33810737 TTATGATTAC
33810747 ATCATGTGCAT
1 ATCATGTGCAT
*
33810758 ATCA--TACAT
1 ATCATGTGCAT
33810767 ATCATGTGCAT
1 ATCATGTGCAT
*
33810778 ATCA--TACAT
1 ATCATGTGCAT
*
33810787 GTCATGTGCAT
1 ATCATGTGCAT
33810798 ATCAT
1 ATCAT
33810803 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:33813701 original size:32 final size:32
Alignment explanation
Indices: 33813660--33813725 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
33813650 AGAAAGCTAC
33813660 GAGACACCCTGTAGTAGCTAGGTCACATGTGT
1 GAGACACCCTGTAGTAGCTAGGTCACATGTGT
33813692 GAGACACCCTGTAGTAGCTAGGTCACATGTGT
1 GAGACACCCTGTAGTAGCTAGGTCACATGTGT
33813724 GA
1 GA
33813726 TACGAGATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (32 bp):
GAGACACCCTGTAGTAGCTAGGTCACATGTGT
Found at i:33820767 original size:32 final size:32
Alignment explanation
Indices: 33820726--33820791 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
33820716 AGAAAGCTAC
33820726 GAGACACCCTGTAGTAGCTAGGTCACATGTGT
1 GAGACACCCTGTAGTAGCTAGGTCACATGTGT
33820758 GAGACACCCTGTAGTAGCTAGGTCACATGTGT
1 GAGACACCCTGTAGTAGCTAGGTCACATGTGT
33820790 GA
1 GA
33820792 TACGAGATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (32 bp):
GAGACACCCTGTAGTAGCTAGGTCACATGTGT
Found at i:33820885 original size:70 final size:71
Alignment explanation
Indices: 33820805--33820967 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
33820795 GAGATGTATC
33820805 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAG-TAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33820869 AGGACA
66 AGGACA
33820875 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33820940 AGGACA
66 AGGACA
33820946 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33820968 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 38 0.41
71 54 0.59
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:33824668 original size:84 final size:83
Alignment explanation
Indices: 33824561--33824721 Score: 209
Period size: 84 Copynumber: 1.9 Consensus size: 83
33824551 GTGGTGGCTC
* *
33824561 ATCCACAAAACCCAGTGGTAGTTTGTTTAATCTG-CCATTGTATTGTGCACTCACAAAAAGTGGC
1 ATCCACAAAACCCAGTGGCAGTTTGCTTAATCTGACCA-TG--TTGTGCACTCACAAAAAGTGGC
33824625 AGTAACTGCAAATATGTGACT
63 AGTAACTGCAAATATGTGACT
* * * *
33824646 ATCCAC-AAACCCAGTGGCAGTTTGCTTAATCTGTAACCATGTTGTGTACTCACAACACGTGGTA
1 ATCCACAAAACCCAGTGGCAGTTTGCTTAATCTG--ACCATGTTGTGCACTCACAAAAAGTGGCA
33824710 GTAACTGCAAAT
64 GTAACTGCAAAT
33824722 GTTTTTATCT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
84 56 0.84
85 6 0.09
86 2 0.03
87 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (83 bp):
ATCCACAAAACCCAGTGGCAGTTTGCTTAATCTGACCATGTTGTGCACTCACAAAAAGTGGCAGT
AACTGCAAATATGTGACT
Found at i:33825364 original size:28 final size:27
Alignment explanation
Indices: 33825304--33825365 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
33825294 CATTTAGGTT
33825304 GTTTTTAATTTATAAAGTTGAAATACG
1 GTTTTTAATTTATAAAGTTGAAATACG
** * *
33825331 AATTTTAATTTATTAAGTGTGAAATATG
1 GTTTTTAATTTATAAAGT-TGAAATACG
33825359 GTTTTTA
1 GTTTTTA
33825366 GTAAAACTAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (27 bp):
GTTTTTAATTTATAAAGTTGAAATACG
Found at i:33826548 original size:2 final size:2
Alignment explanation
Indices: 33826541--33826581 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
33826531 GTTGTTGTTT
33826541 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
33826582 GTCATGTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:33831184 original size:18 final size:19
Alignment explanation
Indices: 33831158--33831200 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
33831148 GCACTGGCTG
33831158 CTCAATGTT-CACCTCCTT
1 CTCAATGTTGCACCTCCTT
* *
33831176 CTCACTGTTGCACTTCCTT
1 CTCAATGTTGCACCTCCTT
*
33831195 GTCAAT
1 CTCAAT
33831201 CCTCCTCTCC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.16, C:0.35, G:0.09, T:0.40
Consensus pattern (19 bp):
CTCAATGTTGCACCTCCTT
Found at i:33837539 original size:29 final size:29
Alignment explanation
Indices: 33837449--33837608 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
33837439 ACTCGATTTC
* * **
33837449 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
33837478 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
33837506 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
33837536 GCACACTTAGTGCCATATATTTCTAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
33837565 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
33837594 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
33837609 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
28 2 0.02
29 106 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:33845607 original size:29 final size:29
Alignment explanation
Indices: 33845517--33845676 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
33845507 ACTCGATTTC
* * **
33845517 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
33845546 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
33845574 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
33845604 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
33845633 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
33845662 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
33845677 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:33847745 original size:73 final size:73
Alignment explanation
Indices: 33847658--33847804 Score: 260
Period size: 73 Copynumber: 2.0 Consensus size: 73
33847648 TCATGGACTC
33847658 ATCATTTCATGAAACTCGTATCTCA-TTACACAATGTAAGTTAACATGATATTACAACACAAATT
1 ATCATTTCATGAAACTCGTATCTCATTTACACAATGTAAGTTAACATGATATTACAACAC-AATT
33847722 CGTAATCAT
65 CGTAATCAT
* *
33847731 ATCATTTCATGAAACTCGTATCTTATTTGCACAATGTAAGTTAACATGATATTACAACACAATTC
1 ATCATTTCATGAAACTCGTATCTCATTTACACAATGTAAGTTAACATGATATTACAACACAATTC
33847796 GTAATCAT
66 GTAATCAT
33847804 A
1 A
33847805 AGCATAAGGA
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
73 38 0.54
74 33 0.46
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (73 bp):
ATCATTTCATGAAACTCGTATCTCATTTACACAATGTAAGTTAACATGATATTACAACACAATTC
GTAATCAT
Found at i:33851836 original size:13 final size:13
Alignment explanation
Indices: 33851818--33851842 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33851808 GAATTGATAT
33851818 GTGTGAAAATTTC
1 GTGTGAAAATTTC
33851831 GTGTGAAAATTT
1 GTGTGAAAATTT
33851843 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:33853030 original size:44 final size:43
Alignment explanation
Indices: 33852946--33853107 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 43
33852936 ATAGGATCCT
* * ***
33852946 GATATGTGATTTCGTGTAAGACCATGTCCGGGATGTTGGCATC
1 GATATATGATTTCGTGTAAGACCATGTCTGGGACAATGGCATC
* *
33852989 GAT-TCATGATTTACGTGTAAGACCATGTCTGGGACACTGGCATA
1 GATAT-ATGATTT-CGTGTAAGACCATGTCTGGGACAATGGCATC
* * * *
33853033 G-TATATGAGTTCGTGTAAGACCCTATTTGGGACAATGGCATC
1 GATATATGATTTCGTGTAAGACCATGTCTGGGACAATGGCATC
* * * *
33853075 GATATGTGATTACATGTAAGACCACGTCTGGGA
1 GATATATGATTTCGTGTAAGACCATGTCTGGGA
33853108 TGTTGGCGTT
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 28 0.29
43 39 0.41
44 28 0.29
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
GATATATGATTTCGTGTAAGACCATGTCTGGGACAATGGCATC
Found at i:33856019 original size:43 final size:43
Alignment explanation
Indices: 33855954--33856126 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
33855944 AACTCGTACA
* * * *
33855954 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * *
33855996 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATATCG
** * *
33856039 ATGCCAATGTCCCAGACATGGTCTTACACACAATCTCA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * *
33856082 ATGCCAATGTCCCAGACATGGTTTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
33856125 AT
1 AT
33856127 AACTTAATGT
Statistics
Matches: 102, Mismatches: 24, Indels: 9
0.76 0.18 0.07
Matches are distributed among these distances:
42 6 0.06
43 94 0.92
44 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:33858932 original size:43 final size:43
Alignment explanation
Indices: 33858885--33859005 Score: 120
Period size: 42 Copynumber: 2.8 Consensus size: 43
33858875 CCTCGATTGA
*
33858885 GATTTACGTATAAGACCATGTCTGGGACATCGGCATCG-TATCT
1 GATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGATAT-T
* * * **
33858928 GATTT-CGTGTAAGATCTTGTCTGGGATAGAGGCATCGATATT
1 GATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGATATT
* * * * *
33858970 GAATTACATGTAAGACCACGTCTGAGACGTCGGCAT
1 GATTTACGTGTAAGACCATGTCTGGGACATCGGCAT
33859006 TGTTCTTGTT
Statistics
Matches: 60, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
42 31 0.52
43 29 0.48
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGATATT
Found at i:33858950 original size:42 final size:41
Alignment explanation
Indices: 33858847--33858966 Score: 109
Period size: 43 Copynumber: 2.9 Consensus size: 41
33858837 GTCTGAGACA
* * *
33858847 TCGTGTAAGATCGTGTCTTGGACACAGGCCTCGATTGAGATT
1 TCGTGTAAGATCATGTCTGGGACACAGGCATCGATT-AGATT
* *
33858889 TACGTATAAGACCATGTCTGGGACATC-GGCATCGTATCT-GATT
1 T-CGTGTAAGATCATGTCTGGGACA-CAGGCATCG-AT-TAGATT
* * *
33858932 TCGTGTAAGATCTTGTCTGGGATAGAGGCATCGAT
1 TCGTGTAAGATCATGTCTGGGACACAGGCATCGAT
33858967 ATTGAATTAC
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
41 2 0.03
42 27 0.43
43 30 0.48
44 3 0.05
45 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGATCATGTCTGGGACACAGGCATCGATTAGATT
Found at i:33858984 original size:85 final size:85
Alignment explanation
Indices: 33858847--33859005 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 85
33858837 GTCTGAGACA
* * * * *
33858847 TCGTGTAAGATCGTGTCTTGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGATCGTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTGAGA
33858912 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * *
33858932 TCGTGTAAGATCTTGTCTGGGATAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGA
1 TCGTGTAAGATCGTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACGTCTGA
*
33858995 GACGTCGGCAT
64 GACATCGGCAT
33859006 TGTTCTTGTT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 56 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (85 bp):
TCGTGTAAGATCGTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTGAGA
CATCGGCATCGTATCTGATT
Found at i:33861456 original size:37 final size:37
Alignment explanation
Indices: 33861406--33861478 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
33861396 TTAATGCATC
33861406 AGCAACAACATTTGCTTTTCCTGGATGATAATCAATG
1 AGCAACAACATTTGCTTTTCCTGGATGATAATCAATG
33861443 AGCAACAACATTTGCTTTTCCTGGATGATAATCAAT
1 AGCAACAACATTTGCTTTTCCTGGATGATAATCAAT
33861479 CACTAACTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (37 bp):
AGCAACAACATTTGCTTTTCCTGGATGATAATCAATG
Found at i:33873353 original size:43 final size:42
Alignment explanation
Indices: 33873244--33873354 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 42
33873234 TGTTTTTGTG
* * * *
33873244 TAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCGTG
1 TAAGACCACGTCTGGGATGTTGGCATCGTATTTGATTACATA
* **
33873286 TAAGACC-CTGTCTAGGATAATGGCATCGATATTTGATTACATA
1 TAAGACCAC-GTCTGGGATGTTGGCATCG-TATTTGATTACATA
33873329 TAAGACCACGTCTGGGATGTTGGCAT
1 TAAGACCACGTCTGGGATGTTGGCAT
33873355 TGTACGAGCT
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 22 0.39
43 32 0.57
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TAAGACCACGTCTGGGATGTTGGCATCGTATTTGATTACATA
Found at i:33875404 original size:29 final size:29
Alignment explanation
Indices: 33875372--33875474 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
33875362 GTGACGAGAT
* *
33875372 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * * *
33875401 TGGCACTAAGTGTGCAAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
33875430 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
33875459 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33875475 TGATCGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:33888335 original size:34 final size:35
Alignment explanation
Indices: 33888292--33888359 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 35
33888282 GAAAAAGTGC
33888292 ATAAATATGAGTTAGAACTCAATCGATAT-AGTTG
1 ATAAATATGAGTTAGAACTCAATCGATATGAGTTG
33888326 ATAAATATGAGTTAGAACTCAATCGATATGAGTT
1 ATAAATATGAGTTAGAACTCAATCGATATGAGTT
33888360 CTAAAAGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 29 0.88
35 4 0.12
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (35 bp):
ATAAATATGAGTTAGAACTCAATCGATATGAGTTG
Found at i:33888912 original size:18 final size:18
Alignment explanation
Indices: 33888889--33888925 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
33888879 TCCTAAAGCC
33888889 AAAATTCACTTTTACTAA
1 AAAATTCACTTTTACTAA
33888907 AAAATTCACTTTTACTAA
1 AAAATTCACTTTTACTAA
33888925 A
1 A
33888926 CTTGGCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTCACTTTTACTAA
Found at i:33891454 original size:40 final size:40
Alignment explanation
Indices: 33891395--33891602 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
33891385 CAATTGAATG
* * * *
33891395 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
33891435 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
33891475 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
33891515 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
33891555 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
33891595 ATATCCGG
1 ATATCCGG
33891603 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:33891533 original size:80 final size:80
Alignment explanation
Indices: 33891396--33891602 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
33891386 AATTGAATGA
* * ** * * *
33891396 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
33891461 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
33891474 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
33891539 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
33891556 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
33891603 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:33899607 original size:40 final size:40
Alignment explanation
Indices: 33899548--33899755 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
33899538 CAATTGAATG
* * * *
33899548 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
33899588 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
33899628 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
33899668 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
33899708 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
33899748 ATATCCGG
1 ATATCCGG
33899756 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:33899686 original size:80 final size:80
Alignment explanation
Indices: 33899549--33899755 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
33899539 AATTGAATGA
* * ** * * *
33899549 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
33899614 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
33899627 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
33899692 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
33899709 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
33899756 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:33905933 original size:20 final size:20
Alignment explanation
Indices: 33905908--33905945 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33905898 GTTTATTCGC
*
33905908 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
33905928 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
33905946 TTTGGAGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:33907594 original size:28 final size:28
Alignment explanation
Indices: 33907562--33907714 Score: 281
Period size: 28 Copynumber: 5.5 Consensus size: 28
33907552 GCGTAGATCA
*
33907562 CGAAATTACCGCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
33907590 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
33907618 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
33907646 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
33907674 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
33907702 CGATA-TACCCCTA
1 CGAAATTACCCCTA
33907715 GGGTTTTAAA
Statistics
Matches: 123, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 8 0.07
28 115 0.93
ACGTcount: A:0.45, C:0.25, G:0.11, T:0.18
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:33915127 original size:28 final size:28
Alignment explanation
Indices: 33915095--33915163 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
33915085 GCGTAGATCA
33915095 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
33915123 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
33915151 CGATA-TACCCCTA
1 CGAAATTACCCCTA
33915164 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:33925526 original size:43 final size:42
Alignment explanation
Indices: 33925393--33925552 Score: 144
Period size: 43 Copynumber: 3.8 Consensus size: 42
33925383 TTCGGGATAT
* * * ** *
33925393 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCA
* * * * * *
33925434 TATCGATGCGACTGTCCCAGACAGGGTTTTACACGAAATC-GA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCA
33925476 TGAACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAA
1 T--ACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCTC-A
* *
33925521 TACAATGCCAGTGTCCTAGACATGGTCTTACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACA
33925553 TGTAATCACA
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 82 0.87
44 1 0.01
45 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCA
Found at i:33925542 original size:86 final size:85
Alignment explanation
Indices: 33925394--33925552 Score: 185
Period size: 86 Copynumber: 1.9 Consensus size: 85
33925384 TCGGGATATT
* * ** * *
33925394 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCGACTGTCCCAGACAGG
1 ACAATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCAATGCCACTGTCCCAGACAGG
*
33925459 GTTTTACACGAAATCGATGA
66 GTCTTACACGAAATCGATGA
* * * *
33925479 ACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCA-ATACAATGCCAGTGTCCTAGACA
1 ACAATGCC-ATATCCCAGACATGGTCTTACACGAAATCACATAT-CAATGCCACTGTCCCAGACA
*
33925543 TGGTCTTACA
64 GGGTCTTACA
33925553 TGTAATCACA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
85 10 0.17
86 50 0.83
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (85 bp):
ACAATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCAATGCCACTGTCCCAGACAGG
GTCTTACACGAAATCGATGA
Found at i:33934755 original size:39 final size:39
Alignment explanation
Indices: 33934675--33934758 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 39
33934665 TTCGATACTT
*
33934675 AATG-TGTAACAACCACATTTTAACTTGGAAATAGGTAC
1 AATGATGTAACAACCACATTTTAACTTGGAAATAAGTAC
33934713 AATGATGTAACAACCACATTTTAACTTGGAAATAAG-AGC
1 AATGATGTAACAACCACATTTTAACTTGGAAATAAGTA-C
33934752 AATGATG
1 AATGATG
33934759 GACTGAGTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
38 5 0.12
39 38 0.88
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (39 bp):
AATGATGTAACAACCACATTTTAACTTGGAAATAAGTAC
Found at i:33949253 original size:43 final size:43
Alignment explanation
Indices: 33949155--33949255 Score: 116
Period size: 43 Copynumber: 2.3 Consensus size: 43
33949145 TACCGAGATG
* * *
33949155 TGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTATTA
1 TGATTACATGTAAGACCATGTCTGAGACAATGGCATCGTATAA
* *
33949198 TGATTACGTGTAAGACCATGTCT-AGGACAATGGGATCGT-TAA
1 TGATTACATGTAAGACCATGTCTGA-GACAATGGCATCGTATAA
*
33949240 TCGATTTCATGTAAGA
1 T-GATTACATGTAAGA
33949256 TTCTGTTTGG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 4 0.08
43 45 0.92
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGAGACAATGGCATCGTATAA
Found at i:33957152 original size:19 final size:19
Alignment explanation
Indices: 33957128--33957164 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
33957118 GGTATTTTTG
*
33957128 ATATGGTTGTTAGAAATGT
1 ATATGGTTATTAGAAATGT
*
33957147 ATATGGTTATTTGAAATG
1 ATATGGTTATTAGAAATG
33957165 GCTTATTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.43
Consensus pattern (19 bp):
ATATGGTTATTAGAAATGT
Found at i:33966451 original size:27 final size:28
Alignment explanation
Indices: 33966394--33966463 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
33966384 AAATTTGTAC
**
33966394 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
33966422 AGCACTAAGTGTGTG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
33966449 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
33966464 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:33968919 original size:40 final size:40
Alignment explanation
Indices: 33968811--33969020 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
33968801 CGGGATTTAA
* * * * *
33968811 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
33968851 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33968891 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33968931 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33968971 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33969011 CCGGATATAT
1 CCGGATATAT
33969021 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:33977051 original size:40 final size:40
Alignment explanation
Indices: 33976943--33977152 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
33976933 CGGGATTTAA
* * * * *
33976943 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
33976983 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33977023 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33977063 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33977103 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33977143 CCGGATATAT
1 CCGGATATAT
33977153 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:33983376 original size:40 final size:40
Alignment explanation
Indices: 33983268--33983477 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
33983258 CGGGATTTAA
* * * * *
33983268 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
33983308 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33983348 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33983388 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33983428 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
33983468 CCGGATATAT
1 CCGGATATAT
33983478 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:33990764 original size:29 final size:29
Alignment explanation
Indices: 33990732--33990800 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
33990722 ATACCCTCCG
* *
33990732 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
33990761 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
*
33990790 AGCACGCACAC
1 AGCTCGCACAC
33990801 TTAATGCCGA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.23, C:0.35, G:0.16, T:0.26
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:33990801 original size:29 final size:29
Alignment explanation
Indices: 33990736--33990808 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
33990726 CCTCCGAGCT
** * * *
33990736 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
33990765 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
33990794 CGCACACTTAATGCC
1 CGCACACTTAGTGCC
33990809 GATCTCGTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:33996223 original size:810 final size:810
Alignment explanation
Indices: 33994664--33996287 Score: 3230
Period size: 810 Copynumber: 2.0 Consensus size: 810
33994654 TGTCATCGAT
33994664 AAATACAACTACGAACCGATCCAAGTATGGCCTGAAAATTCTATTCATTAAATCCATAAACACCG
1 AAATACAACTACGAACCGATCCAAGTATGGCCTGAAAATTCTATTCATTAAATCCATAAACACCG
33994729 CAGGGGCATTAGTGAGCCCAAACGGCATCACCAAGAATTCGTAGTGACCGTACCTCGTTCTAAAA
66 CAGGGGCATTAGTGAGCCCAAACGGCATCACCAAGAATTCGTAGTGACCGTACCTCGTTCTAAAA
33994794 GCGGTTTTGGGTATGTCCGATTCTCGGACCCTCAACTGATAGTACCCCGACCTCAAATCTATCTT
131 GCGGTTTTGGGTATGTCCGATTCTCGGACCCTCAACTGATAGTACCCCGACCTCAAATCTATCTT
33994859 TGAAAACACCGAGGCTCCCTTTAATTGATCAAACAAATCGTCAATTCGTGGCAATGGATATTTAT
196 TGAAAACACCGAGGCTCCCTTTAATTGATCAAACAAATCGTCAATTCGTGGCAATGGATATTTAT
33994924 TCTTTATCGTCACTTTATTGAGTTGACGATAGTCGATGCACAACCTCATGGTTCCGTCCTTCTTC
261 TCTTTATCGTCACTTTATTGAGTTGACGATAGTCGATGCACAACCTCATGGTTCCGTCCTTCTTC
33994989 TTCACAAACAATACAGGTGCGCCCCATGGAGAAAAACTCGGTCGAGCGAAACCTCTATCCGTCAA
326 TTCACAAACAATACAGGTGCGCCCCATGGAGAAAAACTCGGTCGAGCGAAACCTCTATCCGTCAA
33995054 TTCTTGCAATTGAACCTTCAATTCCTTTAATTCCGTTAATGCCATACGATACGGGGCTATTGAAA
391 TTCTTGCAATTGAACCTTCAATTCCTTTAATTCCGTTAATGCCATACGATACGGGGCTATTGAAA
33995119 TCGGCGTAGTACCCGGTACAACTTCGATGCCGAATTCCACTTCTCGAACCGGTGGCAATCCCGGT
456 TCGGCGTAGTACCCGGTACAACTTCGATGCCGAATTCCACTTCTCGAACCGGTGGCAATCCCGGT
33995184 AACTCCTCAGGAAAAACATCTGAATACTCACAAACCACTGGTACCGATTCGAGTTTCCTTTCCGT
521 AACTCCTCAGGAAAAACATCTGAATACTCACAAACCACTGGTACCGATTCGAGTTTCCTTTCCGT
33995249 CTCTTTACTTCCAAACACATACGCAAGGTATGTTTCACACCCCTTTTTCACATACCTCCGAGCGG
586 CTCTTTACTTCCAAACACATACGCAAGGTATGTTTCACACCCCTTTTTCACATACCTCCGAGCGG
33995314 TCATAGAAGATATTATCACTGGCGCTCCTTTTAAATCAGTAGACTCGACTCGGACTACCTCATTA
651 TCATAGAAGATATTATCACTGGCGCTCCTTTTAAATCAGTAGACTCGACTCGGACTACCTCATTA
33995379 TTTGCACTCCTCAAATCAATGGTTTTCCTTTTGCAGTCCACCACTGCATCATGTACGGTCAGCCA
716 TTTGCACTCCTCAAATCAATGGTTTTCCTTTTGCAGTCCACCACTGCATCATGTACGGTCAGCCA
33995444 ATCCATACCAAGAATAACATCAAATTCATG
781 ATCCATACCAAGAATAACATCAAATTCATG
33995474 AAATACAACTACGAACCGATCCAAGTATGGCCTGAAAATTCTATTCATTAAATCCATAAACACCG
1 AAATACAACTACGAACCGATCCAAGTATGGCCTGAAAATTCTATTCATTAAATCCATAAACACCG
33995539 CAGGGGCATTAGTGAGCCCAAACGGCATCACCAAGAATTCGTAGTGACCGTACCTCGTTCTAAAA
66 CAGGGGCATTAGTGAGCCCAAACGGCATCACCAAGAATTCGTAGTGACCGTACCTCGTTCTAAAA
33995604 GCGGTTTTGGGTATGTCCGATTCTCGGACCCTCAACTGATAGTACCCCGACCTCAAATCTATCTT
131 GCGGTTTTGGGTATGTCCGATTCTCGGACCCTCAACTGATAGTACCCCGACCTCAAATCTATCTT
33995669 TGAAAACACCGAGGCTCCCTTTAATTGATCAAACAAATCGTCAATTCGTGGCAATGGATATTTAT
196 TGAAAACACCGAGGCTCCCTTTAATTGATCAAACAAATCGTCAATTCGTGGCAATGGATATTTAT
33995734 TCTTTATCGTCACTTTATTGAGTTGACGATAGTCGATGCACAACCTCATGGTTCCGTCCTTCTTC
261 TCTTTATCGTCACTTTATTGAGTTGACGATAGTCGATGCACAACCTCATGGTTCCGTCCTTCTTC
33995799 TTCACAAACAATACAGGTGCGCCCCATGGAGAAAAACTCGGTCGAGCGAAACCTCTATCCGTCAA
326 TTCACAAACAATACAGGTGCGCCCCATGGAGAAAAACTCGGTCGAGCGAAACCTCTATCCGTCAA
33995864 TTCTTGCAATTGAACCTTCAATTCCTTTAATTCCGTTAATGCCATACGATACGGGGCTATTGAAA
391 TTCTTGCAATTGAACCTTCAATTCCTTTAATTCCGTTAATGCCATACGATACGGGGCTATTGAAA
33995929 TCGGCGTAGTACCCGGTACAACTTCGATGCCGAATTCCACTTCTCGAACCGGTGGCAATCCCGGT
456 TCGGCGTAGTACCCGGTACAACTTCGATGCCGAATTCCACTTCTCGAACCGGTGGCAATCCCGGT
33995994 AACTCCTCAGGAAAAACATCTGAATACTCACAAACCACTGGTACCGATTCGAGTTTCCTTTCCGT
521 AACTCCTCAGGAAAAACATCTGAATACTCACAAACCACTGGTACCGATTCGAGTTTCCTTTCCGT
33996059 CTCTTTACTTCCAAACACATACGCAAGGTATGTTTCACACCCCTTTTTCACATACCTCCGAGCGG
586 CTCTTTACTTCCAAACACATACGCAAGGTATGTTTCACACCCCTTTTTCACATACCTCCGAGCGG
*
33996124 TCATAGAAGATATTATCGCTGGCGCTCCTTTTAAATCAGTAGACTCGACTCGGACTACCTCATTA
651 TCATAGAAGATATTATCACTGGCGCTCCTTTTAAATCAGTAGACTCGACTCGGACTACCTCATTA
33996189 TTTGCACTCCTCAAATCAATGGTTTTCCTTTTGCAGTCCACCACTGCATCATGTACGGTCAGCCA
716 TTTGCACTCCTCAAATCAATGGTTTTCCTTTTGCAGTCCACCACTGCATCATGTACGGTCAGCCA
*
33996254 ATCCATACCAAGAATAACATCGAATTCATG
781 ATCCATACCAAGAATAACATCAAATTCATG
33996284 AAAT
1 AAAT
33996288 GGTAGAAGCA
Statistics
Matches: 812, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
810 812 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (810 bp):
AAATACAACTACGAACCGATCCAAGTATGGCCTGAAAATTCTATTCATTAAATCCATAAACACCG
CAGGGGCATTAGTGAGCCCAAACGGCATCACCAAGAATTCGTAGTGACCGTACCTCGTTCTAAAA
GCGGTTTTGGGTATGTCCGATTCTCGGACCCTCAACTGATAGTACCCCGACCTCAAATCTATCTT
TGAAAACACCGAGGCTCCCTTTAATTGATCAAACAAATCGTCAATTCGTGGCAATGGATATTTAT
TCTTTATCGTCACTTTATTGAGTTGACGATAGTCGATGCACAACCTCATGGTTCCGTCCTTCTTC
TTCACAAACAATACAGGTGCGCCCCATGGAGAAAAACTCGGTCGAGCGAAACCTCTATCCGTCAA
TTCTTGCAATTGAACCTTCAATTCCTTTAATTCCGTTAATGCCATACGATACGGGGCTATTGAAA
TCGGCGTAGTACCCGGTACAACTTCGATGCCGAATTCCACTTCTCGAACCGGTGGCAATCCCGGT
AACTCCTCAGGAAAAACATCTGAATACTCACAAACCACTGGTACCGATTCGAGTTTCCTTTCCGT
CTCTTTACTTCCAAACACATACGCAAGGTATGTTTCACACCCCTTTTTCACATACCTCCGAGCGG
TCATAGAAGATATTATCACTGGCGCTCCTTTTAAATCAGTAGACTCGACTCGGACTACCTCATTA
TTTGCACTCCTCAAATCAATGGTTTTCCTTTTGCAGTCCACCACTGCATCATGTACGGTCAGCCA
ATCCATACCAAGAATAACATCAAATTCATG
Found at i:33999048 original size:29 final size:29
Alignment explanation
Indices: 33999016--33999093 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
33999006 ATACCCTCCG
** *
33999016 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
33999045 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
33999074 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
33999094 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:34003500 original size:27 final size:28
Alignment explanation
Indices: 34003443--34003512 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
34003433 AAATTTGTAC
**
34003443 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
34003471 AGCACTAAGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
34003498 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34003513 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 25 0.62
28 15 0.38
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:34016270 original size:40 final size:40
Alignment explanation
Indices: 34016213--34016436 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
34016203 TCGAATGATG
* * * *
34016213 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
34016253 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
34016293 -CC-GACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
34016331 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
34016371 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
34016412 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
34016437 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
38 35 0.21
39 5 0.03
40 118 0.70
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34016348 original size:78 final size:80
Alignment explanation
Indices: 34016213--34016436 Score: 280
Period size: 78 Copynumber: 2.8 Consensus size: 80
34016203 TCGAATGATG
* * * * *
34016213 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
34016277 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
34016293 -CC-GACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
34016355 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
** * * *
34016371 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCAT
34016434 TTG
64 TTG
34016437 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 62 0.49
79 13 0.10
80 50 0.39
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:34022152 original size:18 final size:19
Alignment explanation
Indices: 34022131--34022166 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
34022121 AATAAAGAAA
*
34022131 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
34022149 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
34022167 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:34023550 original size:29 final size:29
Alignment explanation
Indices: 34023508--34023636 Score: 226
Period size: 29 Copynumber: 4.5 Consensus size: 29
34023498 AAAATTGTAC
34023508 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
34023537 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
34023566 AGCACTAAGTGTGCGAGCTG--AATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
34023593 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
34023622 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34023637 GATTCACTAT
Statistics
Matches: 97, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
27 27 0.28
29 70 0.72
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:34023614 original size:56 final size:57
Alignment explanation
Indices: 34023508--34023636 Score: 224
Period size: 56 Copynumber: 2.3 Consensus size: 57
34023498 AAAATTGTAC
34023508 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTG-AAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* *
34023566 AGCACTAAGTGTGCGAGCTG-AATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
34023622 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34023637 GATTCACTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
56 50 0.72
58 19 0.28
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAACTGAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:34029886 original size:18 final size:19
Alignment explanation
Indices: 34029865--34029900 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
34029855 AATAAAGAAA
*
34029865 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
34029883 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
34029901 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:34031307 original size:59 final size:60
Alignment explanation
Indices: 34031211--34031343 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
34031201 GACAAGATTG
* * *
34031211 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
34031271 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
34031330 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
34031344 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:34031355 original size:29 final size:29
Alignment explanation
Indices: 34031241--34031343 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
34031231 AAAATTGTAC
*
34031241 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
34031270 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
34031300 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
34031329 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34031344 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:34036077 original size:16 final size:15
Alignment explanation
Indices: 34036058--34036123 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 15
34036048 AATCTCATAA
34036058 TATAATTAATATAAAT
1 TATAATTAA-ATAAAT
*
34036074 TATAATTTAATAAAT
1 TATAATTAAATAAAT
*
34036089 TAATAATAACAATAATAAT
1 T-ATAATTA-AAT-A-AAT
*
34036108 TATTATTATAATAAAT
1 TATAATTA-AATAAAT
34036124 ATCTATTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
15 7 0.17
16 16 0.40
17 4 0.10
18 9 0.22
19 4 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
TATAATTAAATAAAT
Found at i:34036106 original size:28 final size:26
Alignment explanation
Indices: 34036055--34036108 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
34036045 AAAAATCTCA
*
34036055 TAATATAATTAATATAAATTATAATT
1 TAATATAATTAATATAAATAATAATT
34036081 TAATA-AATTAATAATAACAATAATAATT
1 TAATATAATTAAT-AT-A-AATAATAATT
34036109 ATTATTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 7 0.29
26 7 0.29
27 1 0.04
28 9 0.38
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (26 bp):
TAATATAATTAATATAAATAATAATT
Found at i:34036118 original size:15 final size:16
Alignment explanation
Indices: 34036100--34036136 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
34036090 AATAATAACA
*
34036100 ATAATAATTAT-TATT
1 ATAATAAATATCTATT
34036115 ATAATAAATATCTATT
1 ATAATAAATATCTATT
34036131 -TAATAA
1 ATAATAA
34036137 CAAGTATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATAAATATCTATT
Found at i:34037117 original size:20 final size:20
Alignment explanation
Indices: 34037083--34037127 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
34037073 AGGGACTAAA
*
34037083 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAGTTCTAAAATTTG
* * *
34037103 ATGAAAATTTCTAAATTTTT
1 ATGAAAAGTTCTAAAATTTG
34037123 ATGAA
1 ATGAA
34037128 TACATGTGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.02, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGAAAAGTTCTAAAATTTG
Found at i:34038114 original size:15 final size:15
Alignment explanation
Indices: 34038094--34038123 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
34038084 GGCAATTTAG
34038094 CCAAATGGATGGAAA
1 CCAAATGGATGGAAA
34038109 CCAAATGGATGGAAA
1 CCAAATGGATGGAAA
34038124 ACTTGTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.27, T:0.13
Consensus pattern (15 bp):
CCAAATGGATGGAAA
Found at i:34039878 original size:40 final size:40
Alignment explanation
Indices: 34039791--34039883 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
34039781 GGCTATTTGT
* ** *
34039791 GGCATTTAGTGTGTGATTTGACATAGCTTCGGCGATATAT
1 GGCACTTAGTGTGCAATTTGACATAGCTTCGGCGATATAC
* * * *
34039831 GGCACTTAGTGTGCAATTTGAGATAGTTTCGGCTATGTAC
1 GGCACTTAGTGTGCAATTTGACATAGCTTCGGCGATATAC
*
34039871 GGTACTTAGTGTG
1 GGCACTTAGTGTG
34039884 TAAGATATCG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.22, C:0.13, G:0.29, T:0.37
Consensus pattern (40 bp):
GGCACTTAGTGTGCAATTTGACATAGCTTCGGCGATATAC
Found at i:34039917 original size:28 final size:28
Alignment explanation
Indices: 34039874--34039936 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
34039864 TATGTACGGT
* *
34039874 ACTTAGTGTGTAAGATATCGAGTGTGGC
1 ACTTAGTGTGCAAGATATCGAGTATGGC
*
34039902 ACTTAGTGTGCGAGATATCGAGTATGGC
1 ACTTAGTGTGCAAGATATCGAGTATGGC
34039930 ACTTAGT
1 ACTTAGT
34039937 ATGTGAGGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
ACTTAGTGTGCAAGATATCGAGTATGGC
Found at i:34039952 original size:28 final size:28
Alignment explanation
Indices: 34039890--34039954 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
34039880 TGTGTAAGAT
* * *
34039890 ATCGAGTGTGGCACTTAGTGTGCGAGAT
1 ATCGAGTATGGCACTTAGTATGCGAGAC
* *
34039918 ATCGAGTATGGCACTTAGTATGTGAGGC
1 ATCGAGTATGGCACTTAGTATGCGAGAC
*
34039946 ATTGAGTAT
1 ATCGAGTAT
34039955 TCAATGGCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.25, C:0.12, G:0.32, T:0.31
Consensus pattern (28 bp):
ATCGAGTATGGCACTTAGTATGCGAGAC
Found at i:34041935 original size:31 final size:31
Alignment explanation
Indices: 34041911--34041984 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 31
34041901 ATATTGAGTC
34041911 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATATTCAGCT
*
34041942 CGCACACTTAGTGC--TATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATATTC-AGCT
34041970 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34041985 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 6 0.15
31 14 0.35
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (31 bp):
CGCACACTTAGTGCTATATATATATTCAGCT
Found at i:34041980 original size:28 final size:29
Alignment explanation
Indices: 34041911--34041984 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 29
34041901 ATATTGAGTC
*
34041911 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATA-T-AACT
34041942 CGCACACTTAGTGCTATATA-ATCA-AACT
1 CGCACACTTAGTGCTATATATAT-ATAACT
34041970 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34041985 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 18 0.44
30 2 0.05
31 21 0.51
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATATAACT
Found at i:34045330 original size:39 final size:39
Alignment explanation
Indices: 34045278--34045390 Score: 154
Period size: 39 Copynumber: 2.9 Consensus size: 39
34045268 AATGTTCGAG
*
34045278 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTA
* * *
34045317 TGATATCCAGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTA
* **
34045356 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
34045391 GGTTCCATAA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
39 49 0.77
40 15 0.23
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTA
Found at i:34045408 original size:78 final size:79
Alignment explanation
Indices: 34045277--34045421 Score: 186
Period size: 79 Copynumber: 1.8 Consensus size: 79
34045267 GAATGTTCGA
** *
34045277 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCAGGCTAAG-CCCGAAGG
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCAGGCTAAGTCCCGAAGG
34045341 CAATTGTGCAAATT
66 CAATTGTGCAAATT
* ** * * *
34045355 GTGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTT-CCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCAGGCTAAGTCCCGAAG
34045419 GCA
65 GCA
34045422 TTTGAACGAG
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
78 27 0.48
79 29 0.52
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCAGGCTAAGTCCCGAAGG
CAATTGTGCAAATT
Found at i:34053111 original size:31 final size:31
Alignment explanation
Indices: 34053087--34053160 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 31
34053077 ATATTGAGTC
34053087 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATATTCAGCT
*
34053118 CGCACACTTAGTGC--TATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATATTC-AGCT
34053146 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34053161 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 6 0.15
31 14 0.35
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (31 bp):
CGCACACTTAGTGCTATATATATATTCAGCT
Found at i:34053156 original size:28 final size:29
Alignment explanation
Indices: 34053087--34053160 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 29
34053077 ATATTGAGTC
*
34053087 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATA-T-AACT
34053118 CGCACACTTAGTGCTATATA-ATCA-AACT
1 CGCACACTTAGTGCTATATATAT-ATAACT
34053146 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34053161 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 18 0.44
30 2 0.05
31 21 0.51
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATATAACT
Found at i:34055173 original size:40 final size:40
Alignment explanation
Indices: 34055088--34055238 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
34055078 AATTGAATGA
* * *
34055088 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
34055128 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
34055169 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
34055208 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
34055239 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:34055252 original size:40 final size:40
Alignment explanation
Indices: 34055124--34055254 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
34055114 TATGCTGGAA
* * *
34055124 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
34055164 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
34055204 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
34055244 ATTATATCCGG
1 ATTATATCCGG
34055255 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:34063103 original size:40 final size:40
Alignment explanation
Indices: 34063037--34063186 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
34063027 AAATTGAATG
* * *
34063037 ATATCCGGGCTAA-ATCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
34063076 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
34063116 ACATCCGGGCTAAGA-CCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
34063155 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
34063187 ACGTGATTAT
Statistics
Matches: 87, Mismatches: 19, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
38 3 0.03
39 39 0.45
40 43 0.49
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:34063200 original size:40 final size:40
Alignment explanation
Indices: 34063073--34063202 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
34063063 TATGCTGGAA
* * *
34063073 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
34063113 GCTACATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
34063152 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
34063192 ATTATATCCGG
1 ATTATATCCGG
34063203 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 31 0.44
40 40 0.56
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:34065860 original size:31 final size:30
Alignment explanation
Indices: 34065822--34065881 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
34065812 CTCGCTGCAA
* *
34065822 TCTGGTGGCTTCGCCACATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATCTGT
*
34065853 TCTGGTGGCCTAGCCACAATATCTATCTG
1 TCTGGTGGCCTAGCCACAATATATATCTG
34065882 GTGACTTCGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (30 bp):
TCTGGTGGCCTAGCCACAATATATATCTGT
Found at i:34069123 original size:33 final size:33
Alignment explanation
Indices: 34069083--34069149 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
34069073 AAGAACAAGT
34069083 ACCCACTGTCGAGAATCGATGATTTATTCGACC
1 ACCCACTGTCGAGAATCGATGATTTATTCGACC
34069116 ACCCACTGTCGAGAATCGATGATTTATTCGACC
1 ACCCACTGTCGAGAATCGATGATTTATTCGACC
34069149 A
1 A
34069150 ACTTTCAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (33 bp):
ACCCACTGTCGAGAATCGATGATTTATTCGACC
Found at i:34078277 original size:9 final size:9
Alignment explanation
Indices: 34078263--34078288 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
34078253 GAATTGAGCA
34078263 TTGAAATGG
1 TTGAAATGG
34078272 TTGAAATGG
1 TTGAAATGG
34078281 TTGAAATG
1 TTGAAATG
34078289 AATATAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (9 bp):
TTGAAATGG
Found at i:34082598 original size:49 final size:49
Alignment explanation
Indices: 34082543--34082921 Score: 641
Period size: 49 Copynumber: 7.7 Consensus size: 49
34082533 TACTAAAATT
* *
34082543 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
* *
34082592 TGTGAAAGTGTATGTGTATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
* * *
34082641 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
* *
34082690 TGTGAAAGTGTATGTGTATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
*
34082739 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
* *
34082788 TGCGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
*
34082837 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
34082886 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGG
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGG
34082922 TTAATGTAAA
Statistics
Matches: 316, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 316 1.00
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
Found at i:34083072 original size:37 final size:37
Alignment explanation
Indices: 34083025--34083108 Score: 132
Period size: 37 Copynumber: 2.3 Consensus size: 37
34083015 GAATATGTTT
*
34083025 CGGGTGAGACCCGATGACTACATGTGGAGATTATGAC
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGAC
* *
34083062 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGAC
*
34083099 CTGGTAAGAC
1 CGGGTAAGAC
34083109 TCCTTTTATA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACATGTGGAGATTATGAC
Found at i:34084947 original size:40 final size:40
Alignment explanation
Indices: 34084865--34084949 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
34084855 AGAATTGAGA
** * * *
34084865 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
* *
34084905 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
34084945 AGTGA
1 AGTGA
34084950 CGTGTATTCG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
Found at i:34085212 original size:29 final size:29
Alignment explanation
Indices: 34085180--34085311 Score: 237
Period size: 29 Copynumber: 4.6 Consensus size: 29
34085170 CATTAACCGA
34085180 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
34085209 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
34085238 GCACTATGTGTGCGAGATCAGTAATCAAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
34085267 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
34085296 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
34085312 TTTTTCAACA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:34085219 original size:58 final size:58
Alignment explanation
Indices: 34085148--34085311 Score: 215
Period size: 58 Copynumber: 2.8 Consensus size: 58
34085138 CGAATGATTA
* *
34085148 GAGGCACTGTGTGTGC-AAATTCCATTAACCGA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAAA-T-CAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
* *
34085206 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
* * ** *
34085264 AAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAG
34085312 TTTTTCAACA
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
57 8 0.08
58 87 0.90
59 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (58 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:34085916 original size:40 final size:40
Alignment explanation
Indices: 34085838--34085935 Score: 94
Period size: 40 Copynumber: 2.5 Consensus size: 40
34085828 GTTACTAAAT
* *
34085838 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGGCAATCGAGCGAATCACTATAA
* * *
34085878 CCGGGCT-ATGTCCC-AAGGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGG-CAATCGAGCGAATCACTATAA
* *
34085918 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAATTCCCGAAGG
34085936 TACGCGATTC
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
39 13 0.28
40 34 0.72
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGGCAATCGAGCGAATCACTATAA
Found at i:34088817 original size:49 final size:49
Alignment explanation
Indices: 34088762--34089092 Score: 536
Period size: 49 Copynumber: 6.8 Consensus size: 49
34088752 TACTAAAATT
* *
34088762 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
34088811 TGTGAAAGTGTATGTGTATGTGATAAAGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
34088860 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
** * *
34088909 TGTGAAAGTGTATGTGCATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
34088958 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
34089007 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
34089056 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
34089093 TAATGTAAAA
Statistics
Matches: 265, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 265 1.00
ACGTcount: A:0.29, C:0.08, G:0.32, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:34089244 original size:37 final size:37
Alignment explanation
Indices: 34089194--34089315 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
34089184 GGAATATGTT
*
34089194 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
34089231 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
* * *
34089268 CCGGGTAAGACCCGATGACTATGTTTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
34089305 CCGGGTAAGAC
1 CCGGGTAAGAC
34089316 TCCTTTTATA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:34105620 original size:6 final size:6
Alignment explanation
Indices: 34105600--34105645 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
34105590 TAAAAAGAAG
* * *
34105600 TAAAAA TAACAA TAAACA TAAACA T-AAAA TAAAAA TAAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
34105646 CAAATAAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 4 0.11
6 31 0.89
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:34108426 original size:17 final size:17
Alignment explanation
Indices: 34108406--34108454 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
34108396 ATACATTTAA
34108406 ATTTTTTATCATATATT
1 ATTTTTTATCATATATT
*
34108423 ATTTTCCTA-CATATATT
1 ATTTT-TTATCATATATT
* *
34108440 ATATTTTATTATATA
1 ATTTTTTATCATATA
34108455 ACATTTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 2 0.08
17 22 0.85
18 2 0.08
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTTTATCATATATT
Found at i:34108448 original size:7 final size:7
Alignment explanation
Indices: 34108446--34108517 Score: 54
Period size: 7 Copynumber: 9.7 Consensus size: 7
34108436 TATTATATTT
34108446 TATTATA
1 TATTATA
** *
34108453 TAACATT
1 TATTATA
34108460 TATTATA
1 TATTATA
34108467 TATATATA
1 TAT-TATA
34108475 TATTTATA
1 TA-TTATA
*
34108483 TATTATC
1 TATTATA
*
34108490 TATCATA
1 TATTATA
34108497 TTATATATA
1 -TAT-TATA
*
34108506 TATTTTA
1 TATTATA
34108513 TATTA
1 TATTA
34108518 CTCATTATAT
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
7 27 0.55
8 18 0.37
9 4 0.08
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (7 bp):
TATTATA
Found at i:34108468 original size:2 final size:2
Alignment explanation
Indices: 34108463--34108508 Score: 51
Period size: 2 Copynumber: 23.5 Consensus size: 2
34108453 TAACATTTAT
* *
34108463 TA TA TA TA TA TA TA TT TA TA TA T- TA TC TA TCA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
34108504 TA TA T
1 TA TA T
34108509 TTTATATTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
1 2 0.05
2 33 0.89
3 2 0.05
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:34108476 original size:24 final size:24
Alignment explanation
Indices: 34108431--34108527 Score: 65
Period size: 25 Copynumber: 4.0 Consensus size: 24
34108421 TTATTTTCCT
*
34108431 ACATATATTATATTTTATTATATA
1 ACATATATTATATTATATTATATA
*
34108455 ACATTTATTATA-TATA-TATATA
1 ACATATATTATATTATATTATATA
** *
34108477 TTTATATATTATCTATCATATTATAT-
1 -ACATATATTA--TATTATATTATATA
* *
34108503 ATATATTTTATATTACTCATTATAT
1 ACATATATTATATTA-T-ATTATAT
34108528 TATTTATAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
22 6 0.11
23 14 0.25
24 12 0.21
25 17 0.30
26 3 0.05
27 5 0.09
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (24 bp):
ACATATATTATATTATATTATATA
Found at i:34108522 original size:27 final size:30
Alignment explanation
Indices: 34108467--34108539 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 30
34108457 ATTTATTATA
34108467 TATATATATATTTATATATTATCTATCATAT
1 TATATATATATTTATATATTATC-ATCATAT
*
34108498 TATATATATATTT-TATATTACTCATTATAT
1 TATATATATATTTATATATTA-TCATCATAT
*
34108528 TATTTATA-ATTT
1 TATATATATATTT
34108540 TAAAATTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 20 0.51
31 15 0.38
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (30 bp):
TATATATATATTTATATATTATCATCATAT
Found at i:34108648 original size:20 final size:20
Alignment explanation
Indices: 34108607--34108648 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
34108597 TCATTATTAA
* *
34108607 TTATTTTTTATGTGATATTT
1 TTATTTATTATGTAATATTT
34108627 TTATTTATTATGTAATTATTT
1 TTATTTATTATGTAA-TATTT
34108648 T
1 T
34108649 GTAAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (20 bp):
TTATTTATTATGTAATATTT
Found at i:34118775 original size:42 final size:42
Alignment explanation
Indices: 34118728--34118834 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
34118718 TATTGGTCTC
34118728 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
34118770 GGCACTAAGTGTACGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
34118812 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
34118835 ATTGTACAGC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.30, C:0.15, G:0.33, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:34118899 original size:27 final size:28
Alignment explanation
Indices: 34118842--34118911 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
34118832 AAAATTGTAC
**
34118842 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
34118870 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
34118897 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34118912 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:34125409 original size:27 final size:28
Alignment explanation
Indices: 34125352--34125421 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
34125342 AAAATTGTAC
**
34125352 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
34125380 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
34125407 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34125422 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:34132599 original size:27 final size:28
Alignment explanation
Indices: 34132542--34132611 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
34132532 AAAATTGTAC
**
34132542 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
34132570 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
34132597 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
34132612 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:34134548 original size:206 final size:206
Alignment explanation
Indices: 34134019--34134582 Score: 823
Period size: 205 Copynumber: 2.7 Consensus size: 206
34134009 TGTTACACAG
34134019 ACGATTATGCTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA
1 ACGATTATGCTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA
* **
34134084 GACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTG
66 GACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCATCTCTG
* * ** * *
34134149 TATTGTCAGAGAACGAGTCAAAGTCTAGCATCTTCACTTTGATGGAGCGCAGATACATAGCAGAT
131 TATTGTCAGAGAACAAATCAAAGTCTAGCATCTTCACTTCAATAGAGAGCAGATACATAGCAGAT
**
34134214 CTCACCTTCGG
196 CTCACCTTCAA
* * * * * *
34134225 ATGTTTATGCTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTACTTACAAGGAACAAATCAAA
1 ACGATTATGCTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA
34134289 GACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCATCTCTG
66 GACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCATCTCTG
* *
34134354 TATTGTCAGAGAACAAATCGAAGTCTGGCATC-TCTACTTCAATAGAGAGCAGATACATAGCAGA
131 TATTGTCAGAGAACAAATCAAAGTCTAGCATCTTC-ACTTCAATAGAGAGCAGATACATAGCAGA
*
34134418 TCTGACCTTCAA
195 TCTCACCTTCAA
*
34134430 ACGATTA-GACTGAAGCAAGATCCAAGATGATTTGGCATCTTTGTGCTTACAAGGAACAAATCGA
1 ACGATTATG-CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA
** *
34134494 AGATGTAGCTGATTTGGCTTTCACGTGTTTATC-CTGAAGCAAATCTAAGATGATTTGTT-ATCT
65 AGACATAGCTGATTTGGCTTTCACGTGTTTA-CGATGAAGCAAATCTAAGATGATTT-TTCATCT
* *
34134557 CTGTATTGTTAGAGAGCAAATCAAAG
128 CTGTATTGTCAGAGAACAAATCAAAG
34134583 AAGCAGATTT
Statistics
Matches: 320, Mismatches: 33, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
204 3 0.01
205 180 0.56
206 134 0.42
207 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (206 bp):
ACGATTATGCTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA
GACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCATCTCTG
TATTGTCAGAGAACAAATCAAAGTCTAGCATCTTCACTTCAATAGAGAGCAGATACATAGCAGAT
CTCACCTTCAA
Found at i:34137869 original size:39 final size:39
Alignment explanation
Indices: 34137805--34137959 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
34137795 TCGGGACTTA
*
34137805 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* * *
34137845 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
34137884 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
34137923 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
34137960 TTCATACACA
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.91
40 10 0.09
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.24
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:34139533 original size:14 final size:15
Alignment explanation
Indices: 34139514--34139551 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
34139504 TATATTATAT
34139514 TTTATTATATA-ACA
1 TTTATTATATATACA
*
34139528 TTTATTATATATATA
1 TTTATTATATATACA
34139543 TTTA-TATAT
1 TTTATTATAT
34139552 TATCTATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTATTATATATACA
Done.