Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 122 of 425
Found at i:36206610 original size:27 final size:27
Alignment explanation
Indices: 36206388--36206636 Score: 137
Period size: 27 Copynumber: 9.1 Consensus size: 27
36206378 TCTACAAACT
* * *
36206388 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
36206415 AATGGTATTTCTA-TAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* * *
36206444 AAGGGTATTTCT-GTAACTTTGTAAATT
1 AAGGGTATTT-TAGTAATTTTATAAATC
* * * *
36206471 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTATAAATC
* ** * * *
36206498 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
36206525 AAAGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
36206551 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTATAAATC
*
36206578 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTATAAATC
* *** * *
36206606 GAGGGTAAAATAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
36206633 AAGG
1 AAGG
36206637 TAAAACGATA
Statistics
Matches: 179, Mismatches: 36, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.01
27 147 0.82
28 15 0.08
29 15 0.08
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:36206747 original size:81 final size:81
Alignment explanation
Indices: 36206591--36206959 Score: 480
Period size: 81 Copynumber: 4.6 Consensus size: 81
36206581 GGGTATTTTA
* * ** *
36206591 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATC-AAGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
36206655 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
* *
36206671 ATAATTATGTAAATTAG-GGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGT
1 GTAATTATGTAAA-TAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGT
36206735 AAATCAGGGGTAAAACG
65 AAATCAGGGGTAAAACG
*
36206752 GTAATTATGTAAATTAG-GGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGT
1 GTAATTATGTAAA-TAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGT
36206816 AAATCAGGGGTAAAACG
65 AAATCAGGGGTAAAACG
* * * * * *
36206833 GTAATTATGTAAATCGAGGATAAAATGGTAATTCTGTAAATCG-GGGTAAAATAGA-AATTCTAT
1 GTAATTATGTAAATAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA-CGATAATTATGT
*
36206896 AAA-CTAAGGGTAAAACG
65 AAATC-AGGGGTAAAACG
* * * **
36206913 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGG
1 GTAATTATGTAAATAGAGGGTAAAACGGTAATTCTGTAAATCGAGGG
36206960 CATTTCAGTA
Statistics
Matches: 261, Mismatches: 22, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
79 1 0.00
80 100 0.38
81 160 0.61
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
GTAATTATGTAAATAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
AATCAGGGGTAAAACG
Found at i:36206953 original size:27 final size:27
Alignment explanation
Indices: 36206591--36206959 Score: 376
Period size: 27 Copynumber: 13.7 Consensus size: 27
36206581 GGGTATTTTA
* **
36206591 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
36206618 GTAATTCTGTAAATC-AAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
36206644 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * *
36206671 ATAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
36206698 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
36206725 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
36206752 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
36206779 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
36206806 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * *
36206833 GTAATTATGTAAATCGAGGATAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
36206860 GTAATTCTGTAAATCG-GGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
36206886 GAAATTCTATAAA-CTAAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
36206913 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
36206940 GTAATTTTACAAATCGAGGG
1 GTAATTCTGTAAATCGAGGG
36206960 CATTTCAGTA
Statistics
Matches: 293, Mismatches: 38, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.00
26 43 0.15
27 245 0.84
28 4 0.01
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:36209651 original size:38 final size:35
Alignment explanation
Indices: 36209592--36209708 Score: 133
Period size: 31 Copynumber: 3.5 Consensus size: 35
36209582 TCAATCATGC
*
36209592 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
36209631 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
36209662 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
36209693 ACTGGGCCGAAGCCTT
1 ACTGGGCCGAAGCCTT
36209709 CACTGTAAAC
Statistics
Matches: 77, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 48 0.62
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:36209653 original size:31 final size:31
Alignment explanation
Indices: 36209615--36209708 Score: 179
Period size: 31 Copynumber: 3.0 Consensus size: 31
36209605 CCTTTTCATA
*
36209615 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
36209646 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
36209677 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
36209708 T
1 T
36209709 CACTGTAAAC
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:36209952 original size:24 final size:24
Alignment explanation
Indices: 36209901--36210043 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
36209891 GCTTTATCAT
*
36209901 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
36209926 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
36209950 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
36209973 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
36209997 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
36210021 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
36210044 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:36209980 original size:47 final size:48
Alignment explanation
Indices: 36209901--36210042 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
36209891 GCTTTATCAT
* *
36209901 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
36209950 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
36209997 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
36210043 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:36210001 original size:71 final size:72
Alignment explanation
Indices: 36209900--36210043 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
36209890 TGCTTTATCA
*
36209900 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
36209965 GCCCTTT
66 GCCCTTT
* * **
36209972 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
36210035 AGCCCTTT
65 AGCCCTTT
36210043 T
1 T
36210044 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:36210116 original size:20 final size:20
Alignment explanation
Indices: 36210093--36210152 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
36210083 TATGATTACC
36210093 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
36210113 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
36210133 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
36210153 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:36210227 original size:25 final size:25
Alignment explanation
Indices: 36210195--36210242 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36210185 ATACATAAAC
* * *
36210195 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
36210220 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
36210243 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:36211464 original size:27 final size:27
Alignment explanation
Indices: 36211402--36211466 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
36211392 GGGCATATTC
36211402 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
36211429 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
36211456 GTCTTTTTACC
1 GTCATTTTACC
36211467 TAATAGGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:36211540 original size:27 final size:27
Alignment explanation
Indices: 36211517--36211735 Score: 195
Period size: 27 Copynumber: 8.0 Consensus size: 27
36211507 TTGGTAAATC
*
36211517 TACAAACTAAGGGTATTTCAGTAATTT
1 TACAAACTAAGGGTATTTCGGTAATTT
** * * **
36211544 TGTAAACCAATGGTATTTCTATAATTTT
1 TACAAACTAAGGGTATTTCGGTAA-TTT
* * * *
36211572 TAGAAAGTCAAGGGTATTTCTGTAACTT
1 TACAAACT-AAGGGTATTTCGGTAATTT
** * * *
36211600 TGTAAATTAGGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCGGTAATTT
* *
36211627 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAACTAAGGGTATTTCGGTAATTT
* * *
36211654 CACAAACCAAGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCGGTAATTT
* *
36211681 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCGGTAATTT
**
36211708 TACAAACTAAGGGTATTTTAGTAATTT
1 TACAAACTAAGGGTATTTCGGTAATTT
36211735 T
1 T
36211736 GTAAATCGAG
Statistics
Matches: 155, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
27 127 0.82
28 14 0.09
29 14 0.09
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
TACAAACTAAGGGTATTTCGGTAATTT
Found at i:36211747 original size:27 final size:27
Alignment explanation
Indices: 36211525--36211773 Score: 146
Period size: 27 Copynumber: 9.1 Consensus size: 27
36211515 TCTACAAACT
* * *
36211525 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
36211552 AATGGTATTTCTA-TAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* * *
36211581 AAGGGTATTTCT-GTAACTTTGTAAATT
1 AAGGGTATTT-TAGTAATTTTATAAATC
* * * *
36211608 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTATAAATC
* ** * * *
36211635 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
36211662 AAGGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
36211688 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTATAAATC
*
36211715 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTATAAATC
* *** * *
36211743 GAGGGTAAAATAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
36211770 AAGG
1 AAGG
36211774 TAAAACGATA
Statistics
Matches: 181, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.01
27 149 0.82
28 15 0.08
29 15 0.08
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:36211748 original size:81 final size:80
Alignment explanation
Indices: 36211505--36211749 Score: 224
Period size: 81 Copynumber: 3.0 Consensus size: 80
36211495 TACAAGGATG
* * ** ** * *
36211505 TTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA-TAAT
1 TTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT-TAGTAAT
36211569 TTTTAGAAAGTCAAGGGTA
65 TTTT--AAA-TCAAGGGTA
* ** * * * **
36211588 TTTCT-GTAACTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAAT
1 TTT-TGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAAT
** *
36211652 TTCACAAACCAAGGGTA
65 TT-TTAAATCAAGGGTA
*
36211669 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATT
1 TTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATT
*
36211734 TTGTAAATCGAGGGTA
66 TT-TAAATCAAGGGTA
36211750 AAATAGTAAT
Statistics
Matches: 126, Mismatches: 31, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
80 1 0.01
81 74 0.59
82 3 0.02
83 47 0.37
84 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
TTTTGGTAAATTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATT
TTTAAATCAAGGGTA
Found at i:36211812 original size:27 final size:27
Alignment explanation
Indices: 36211728--36212083 Score: 393
Period size: 27 Copynumber: 13.2 Consensus size: 27
36211718 GGGTATTTTA
* **
36211728 GTAATTTTGTAAATC-GAGGGTAAAATA
1 GTAATTATGTAAATCAG-GGGTAAAACG
* *
36211755 GTAATTCTGTAAATCA-AGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
*
36211781 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
*
36211808 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
* *
36211835 GTAATTCTGTAAGTC-GAGGGTAAAACG
1 GTAATTATGTAAATCAG-GGGTAAAACG
*
36211862 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
*
36211889 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
* *
36211916 GTAATTCTGTAAGTC-GAGGGTAAAACG
1 GTAATTATGTAAATCAG-GGGTAAAACG
*
36211943 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTATGTAAATCAGGGGTAAAACG
* *
36211970 GTAATTATGTAAATCGAGGAG-AAAATG
1 GTAATTATGTAAATC-AGGGGTAAAACG
* * **
36211997 GTAATTCTGTAAATCGGGGGTAAAATA
1 GTAATTATGTAAATCAGGGGTAAAACG
* *
36212024 GTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTATGTAAATC-AGGGGTAAAACG
*
36212051 GTAATTCTGTAAATC-GAGGGTAAAACG
1 GTAATTATGTAAATCAG-GGGTAAAACG
*
36212078 ATAATT
1 GTAATT
36212084 TTACAAATCG
Statistics
Matches: 282, Mismatches: 36, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
26 27 0.10
27 248 0.88
28 7 0.02
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTATGTAAATCAGGGGTAAAACG
Found at i:36211885 original size:81 final size:81
Alignment explanation
Indices: 36211728--36212097 Score: 473
Period size: 81 Copynumber: 4.6 Consensus size: 81
36211718 GGGTATTTTA
* * ** *
36211728 GTAATTTTGTAAA-TCGAGGGTAAAATAGTAATTCTGTAAATC-AAGGTAAAACGATAATTATGT
1 GTAATTATGTAAATTAG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGT
36211791 AAATCAGGGGTAAAACG
65 AAATCAGGGGTAAAACG
*
36211808 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
36211873 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
*
36211889 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
36211954 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
* * * * * *
36211970 GTAATTATGTAAATCGAGGAG-AAAATGGTAATTCTGTAAATCGGGGGTAAAA-TAGTAATTCTG
1 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTATG
*
36212033 TAAA-CTAAGGGTAAAACG
64 TAAATC-AGGGGTAAAACG
* * * * **
36212051 GTAATTCTGTAAA-TCGAGGGTAAAACGATAATTTTACAAATCGAGGG
1 GTAATTATGTAAATTAG-GGGTAAAACGGTAATTCTGTAAATCGAGGG
36212098 CATTTCAGTA
Statistics
Matches: 259, Mismatches: 24, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
79 1 0.00
80 38 0.15
81 216 0.83
82 4 0.02
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
AATCAGGGGTAAAACG
Found at i:36215235 original size:30 final size:29
Alignment explanation
Indices: 36215141--36215242 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
36215131 TATAGTGAAT
* * *
36215141 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
36215170 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
36215198 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
36215228 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36215243 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:36222607 original size:6 final size:6
Alignment explanation
Indices: 36222589--36222708 Score: 61
Period size: 6 Copynumber: 19.3 Consensus size: 6
36222579 AAGAAACATT
* *
36222589 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGGTGA A--AAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA---GA ATCAGA ATCAGA
* * * *
36222638 ATCAGA ATCAGT ATCAGGTA A-CAGA ATTAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
36222689 A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
36222709 GTGAATGCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 28
0.68 0.10 0.22
Matches are distributed among these distances:
4 2 0.02
5 5 0.06
6 62 0.71
7 13 0.15
8 2 0.02
9 3 0.03
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:36222636 original size:31 final size:31
Alignment explanation
Indices: 36222600--36222708 Score: 121
Period size: 31 Copynumber: 3.5 Consensus size: 31
36222590 TCAGAACTAG
*
36222600 AATCAGAATCAGAATCAGAATTAGGTGAA-AA
1 AATCAGAATCAGAATCAGAATCAGGT-AACAA
* *
36222631 AATCAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
* * * *
36222662 AATTAAAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
*
36222693 AATCAAAAATCAGAAT
1 AATC-AGAATCAGAAT
36222709 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
30 2 0.03
31 57 0.81
32 11 0.16
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAA
Found at i:36224237 original size:40 final size:39
Alignment explanation
Indices: 36224192--36224399 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
36224182 CGGAATACAA
*
36224192 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
36224232 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
36224272 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
36224312 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
36224352 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
36224392 CCGGATAT
1 CCGGATAT
36224400 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36224339 original size:80 final size:81
Alignment explanation
Indices: 36224192--36224397 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
36224182 CGGAATACAA
* * * *
36224192 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
36224256 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
36224272 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
36224335 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
36224352 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
36224398 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:36231193 original size:93 final size:93
Alignment explanation
Indices: 36231081--36231252 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36231071 GCCCATAAGT
* *
36231081 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36231146 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
36231174 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36231239 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
36231253 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36231248 original size:46 final size:46
Alignment explanation
Indices: 36231073--36231248 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
36231063 TGTAACCCGC
* * *
36231073 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
36231119 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
36231169 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
36231212 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36231249 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:36233673 original size:30 final size:30
Alignment explanation
Indices: 36233629--36233717 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
36233619 CAAAGATAAC
36233629 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
36233658 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
36233688 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
36233718 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:36233677 original size:15 final size:15
Alignment explanation
Indices: 36233629--36233708 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
36233619 CAAAGATAAC
*
36233629 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
36233643 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
36233658 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
36233673 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
36233688 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
36233703 AAGAAA
1 AAGAAA
36233709 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:36233717 original size:15 final size:15
Alignment explanation
Indices: 36233640--36233717 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
36233630 AGAAAACCGA
36233640 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
36233655 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
36233669 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
36233684 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
36233700 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
36233715 ATA
1 ATA
36233718 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36236781 original size:93 final size:93
Alignment explanation
Indices: 36236669--36236840 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36236659 GCCCATAAGT
* *
36236669 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36236734 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
36236762 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36236827 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
36236841 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36236836 original size:46 final size:46
Alignment explanation
Indices: 36236661--36236836 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
36236651 TGTAACCCGC
* * *
36236661 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
36236707 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
36236757 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
36236800 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36236837 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:36248101 original size:25 final size:25
Alignment explanation
Indices: 36248072--36248119 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
36248062 TTATAGTATG
* *
36248072 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36248097 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
36248120 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36248226 original size:20 final size:20
Alignment explanation
Indices: 36248163--36248218 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
36248153 TAAACAAGAT
*
36248163 ATGTATAATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
36248183 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
36248203 ATGTATGATATGCACA
1 ATGTATGATATGCACA
36248219 CGAGATGTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:36248309 original size:23 final size:23
Alignment explanation
Indices: 36248272--36248461 Score: 247
Period size: 23 Copynumber: 8.0 Consensus size: 23
36248262 GAGGAAGTGC
36248272 AAAAGGGACTATGCCCCAGTTATT
1 AAAAGGG-CTATGCCCCAGTTATT
**
36248296 AAAAGGGCTATGCCTTAGTTATT
1 AAAAGGGCTATGCCCCAGTTATT
*
36248319 AAAAGGGCTATGCCCTAGTTATT
1 AAAAGGGCTATGCCCCAGTTATT
36248342 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGC-TATGCCCCAGTTATT
36248366 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGC-TATGCCCCAGTTATT
*
36248390 -AAAGGGCTTATGCCACAGTTATT
1 AAAAGGGC-TATGCCCCAGTTATT
*
36248413 AAAAAAGGGCTTTGCCCCAGTTATT
1 --AAAAGGGCTATGCCCCAGTTATT
*
36248438 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTATGCC-CCAGTTAT
36248462 ATGATAAAGC
Statistics
Matches: 151, Mismatches: 9, Indels: 11
0.88 0.05 0.06
Matches are distributed among these distances:
23 71 0.47
24 52 0.34
25 21 0.14
26 7 0.05
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTATGCCCCAGTTATT
Found at i:36248356 original size:47 final size:47
Alignment explanation
Indices: 36248272--36248447 Score: 248
Period size: 47 Copynumber: 3.7 Consensus size: 47
36248262 GAGGAAGTGC
**
36248272 AAAAGGGACTATGCCCCAGTTATTAAAAGGGC-TATGCCTTAGTTATT
1 AAAAGGG-CTATGCCCCAGTTATTAAAAGGGCTTATGCCACAGTTATT
* *
36248319 AAAAGGGCTATGCCCTAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTATGCCCCAGTTATTAAAAGGGCTTATGCCACAGTTATT
36248366 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCACAGTTATT
1 AAAAGGGC-TATGCCCCAGTTATTAAAAGGGCTTATGCCACAGTTATT
*
36248413 AAAAAAGGGCTTTGCCCCAGTTATTAAAAGAGGCT
1 --AAAAGGGCTATGCCCCAGTTATTAAAAG-GGCT
36248448 AGGCCTCCAG
Statistics
Matches: 117, Mismatches: 6, Indels: 9
0.89 0.05 0.07
Matches are distributed among these distances:
46 23 0.20
47 50 0.43
48 28 0.24
49 12 0.10
50 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTATGCCCCAGTTATTAAAAGGGCTTATGCCACAGTTATT
Found at i:36248688 original size:30 final size:31
Alignment explanation
Indices: 36248654--36248717 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
36248644 CGTTTACAGT
36248654 AAAA-GCTTCGGCCCAGTAATATGAAATATG
1 AAAAGGCTTCGGCCCAGTAATATGAAATATG
** *
36248684 AAAAGGCTTCGGCCCAGTGTTATGAATTATG
1 AAAAGGCTTCGGCCCAGTAATATGAAATATG
36248715 AAA
1 AAA
36248718 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTAATATGAAATATG
Found at i:36252063 original size:15 final size:16
Alignment explanation
Indices: 36252031--36252064 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
36252021 ATTTCATCTC
*
36252031 ATTTGCATTTAGGTTA
1 ATTTGCATCTAGGTTA
36252047 ATTTGCATCTA-GTTA
1 ATTTGCATCTAGGTTA
36252062 ATT
1 ATT
36252065 AATTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (16 bp):
ATTTGCATCTAGGTTA
Found at i:36256726 original size:12 final size:12
Alignment explanation
Indices: 36256709--36256734 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36256699 AGGTGGAGGA
36256709 GAGGAAATTGGG
1 GAGGAAATTGGG
36256721 GAGGAAATTGGG
1 GAGGAAATTGGG
36256733 GA
1 GA
36256735 ATTTGAGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.50, T:0.15
Consensus pattern (12 bp):
GAGGAAATTGGG
Found at i:36256825 original size:21 final size:20
Alignment explanation
Indices: 36256799--36256841 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
36256789 GGAATTTGAA
36256799 TTGAGT-AGTTGAGGGAGTGGT
1 TTGAGTGAGTTGA-GGAG-GGT
*
36256820 TTGAGTGATTTGAGGAGGGT
1 TTGAGTGAGTTGAGGAGGGT
36256840 TT
1 TT
36256842 TTATGATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (20 bp):
TTGAGTGAGTTGAGGAGGGT
Found at i:36257900 original size:27 final size:27
Alignment explanation
Indices: 36257862--36258148 Score: 371
Period size: 27 Copynumber: 10.7 Consensus size: 27
36257852 CGTACCTGAA
* *
36257862 CCCTAATGTGATAAAATGATAATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
*
36257889 CCCTCATGTGATAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
* *
36257916 CCCTCATGTGATAAAATGACGATTTTC
1 CCCTCATGTGATAAAATGACAATTTTG
* *
36257943 CCCTCATATGGTAAAATGACAATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
* * *
36257970 TCCTCATGTGATAATATGACAATTTTT
1 CCCTCATGTGATAAAATGACAATTTTG
* * *
36257997 CCCTCATGTGGT--AATGACGATTTTT
1 CCCTCATGTGATAAAATGACAATTTTG
* *
36258022 CCCTCATGTGGTAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
* *
36258049 CCTTCATGTGATAAAATGACGATTTTG
1 CCCTCATGTGATAAAATGACAATTTTG
*
36258076 CCCTCATGTGATAAAATGACAATTTTT
1 CCCTCATGTGATAAAATGACAATTTTG
* *
36258103 CCCTCATGTGATAAAATGATAATTTTT
1 CCCTCATGTGATAAAATGACAATTTTG
*
36258130 CCCTTATGTGATAAAATGA
1 CCCTCATGTGATAAAATGA
36258149 TCGAAATACC
Statistics
Matches: 233, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
25 23 0.10
27 210 0.90
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37
Consensus pattern (27 bp):
CCCTCATGTGATAAAATGACAATTTTG
Found at i:36258114 original size:133 final size:133
Alignment explanation
Indices: 36257883--36258139 Score: 417
Period size: 133 Copynumber: 1.9 Consensus size: 133
36257873 TAAAATGATA
36257883 ATTTTGCCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTCCCCTC
1 ATTTTGCCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTCCCCTC
* *
36257948 ATATGGTAAAATGACAATTTTGTCCTCATGTGATAATATGACAATTTTTCCCTCATGTGGTAATG
66 ATATGATAAAATGACAATTTTGTCCTCATGTGATAAAATGACAATTTTTCCCTCATGTGGTAATG
36258013 ACG
131 ACG
* * * *
36258016 ATTTTTCCCTCATGTGGTAAAATGACGATTTTGCCTTCATGTGATAAAATGACGATTTTGCCCTC
1 ATTTTGCCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTCCCCTC
* * *
36258081 ATGTGATAAAATGACAATTTT-TCCCTCATGTGATAAAATGATAATTTTTCCCTTATGTG
66 ATATGATAAAATGACAATTTTGT-CCTCATGTGATAAAATGACAATTTTTCCCTCATGTG
36258140 ATAAAATGAT
Statistics
Matches: 114, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
132 1 0.01
133 113 0.99
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (133 bp):
ATTTTGCCCTCATGTGATAAAATGACGATTTTGCCCTCATGTGATAAAATGACGATTTTCCCCTC
ATATGATAAAATGACAATTTTGTCCTCATGTGATAAAATGACAATTTTTCCCTCATGTGGTAATG
ACG
Found at i:36258160 original size:27 final size:26
Alignment explanation
Indices: 36258141--36258230 Score: 137
Period size: 27 Copynumber: 3.3 Consensus size: 26
36258131 CCTTATGTGA
36258141 TAAAATGATCGAAATACCCTCATAGGG
1 TAAAATGA-CGAAATACCCTCATAGGG
36258168 TAAAATGACTGAAATACCCTCATAGGG
1 TAAAATGAC-GAAATACCCTCATAGGG
36258195 TAAAATGACCGAAATACCC-CTATAGGG
1 TAAAATGA-CGAAATACCCTC-ATAGGG
36258222 TAAAATGAC
1 TAAAATGAC
36258231 TATAATATCC
Statistics
Matches: 60, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
26 3 0.05
27 56 0.93
28 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (26 bp):
TAAAATGACGAAATACCCTCATAGGG
Found at i:36258251 original size:54 final size:54
Alignment explanation
Indices: 36258141--36258257 Score: 150
Period size: 54 Copynumber: 2.2 Consensus size: 54
36258131 CCTTATGTGA
* *
36258141 TAAAATGATCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCTCATAAGG
**
36258195 TAAAATGACCGAAATACCC-CTATAGGGTAAAATGACT-ATAATATCCC-GGTAAGG
1 TAAAATGACCGAAATACCCTC-ATAGGGTAAAATGACTGA-AATA-CCCTCATAAGG
36258249 TAAAATGAC
1 TAAAATGAC
36258258 AGATTTGTTC
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
53 2 0.04
54 51 0.91
55 3 0.05
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (54 bp):
TAAAATGACCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCTCATAAGG
Found at i:36258621 original size:18 final size:18
Alignment explanation
Indices: 36258565--36258623 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
36258555 TCTGCTTGCA
*
36258565 TACTGCACTGATTACTGT
1 TACTGCACTGATTAATGT
* *
36258583 TACTGCATTG-TTCATGGT
1 TACTGCACTGATTAAT-GT
*
36258601 TACTGCACTGATTAATAT
1 TACTGCACTGATTAATGT
36258619 TACTG
1 TACTG
36258624 AAATGGGCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 3 0.09
18 26 0.79
19 4 0.12
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (18 bp):
TACTGCACTGATTAATGT
Found at i:36261272 original size:39 final size:39
Alignment explanation
Indices: 36261191--36261353 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
36261181 TATGGTAACC
* * *
36261191 CGCACAAATGCCTTTGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
36261231 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
36261270 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
36261309 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
36261348 CGCACA
1 CGCACA
36261354 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:36268335 original size:15 final size:15
Alignment explanation
Indices: 36268315--36268345 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36268305 TTCTTGAAGT
36268315 AATAACACCCACCTC
1 AATAACACCCACCTC
*
36268330 AATAACACCCTCCTC
1 AATAACACCCACCTC
36268345 A
1 A
36268346 TGAACGTGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.16
Consensus pattern (15 bp):
AATAACACCCACCTC
Found at i:36275108 original size:17 final size:18
Alignment explanation
Indices: 36275086--36275119 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36275076 CACATTGAAG
36275086 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
36275103 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
36275120 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:36277040 original size:29 final size:27
Alignment explanation
Indices: 36277006--36277107 Score: 87
Period size: 29 Copynumber: 3.6 Consensus size: 27
36276996 ACTCGATCAT
*
36277006 GCACACTTAGTGCCATGTGATTTAAGCCC
1 GCACACTTAGTGCCAT-T-ATTTAAGCTC
* * * *
36277035 GCACACATAGTGCCATATAGTTCAAACTA
1 GCACACTTAGTGCCAT-TA-TTTAAGCTC
*
36277064 GCACACTTAGTGCCATACATTTCAAGCTC
1 GCACACTTAGTGCCAT-TATTT-AAGCTC
*
36277093 GCACACTCAGTGCCA
1 GCACACTTAGTGCCA
36277108 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (27 bp):
GCACACTTAGTGCCATTATTTAAGCTC
Found at i:36279481 original size:29 final size:29
Alignment explanation
Indices: 36279401--36279513 Score: 176
Period size: 29 Copynumber: 4.0 Consensus size: 29
36279391 ATACATGCAC
* * *
36279401 ATGGCCCACTAAGCCC-AATCTCATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
*
36279429 ATGGCCCATT-GGCCCAAATCACATTCGT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
36279457 ATGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTCAT
36279486 ATGGCCCATTAGGCCCAAATCACATTCA
1 ATGGCCCATTAGGCCCAAATCACATTCA
36279514 GATTCATGCT
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
27 4 0.05
28 29 0.37
29 45 0.58
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTCAT
Found at i:36279492 original size:57 final size:57
Alignment explanation
Indices: 36279401--36279512 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
36279391 ATACATGCAC
*
36279401 ATGGCCCACTAAGCCCAATCTCATTCATATGGCCCATT-GGCCCAAATCACATTCGT
1 ATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCACATTCGT
* *
36279457 ATGGCCCATTAGGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATCACATTC
1 ATGGCCCACTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCAAATCACATTC
36279513 AGATTCATGC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 14 0.27
57 21 0.41
58 16 0.31
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (57 bp):
ATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCACATTCGT
Found at i:36287512 original size:28 final size:27
Alignment explanation
Indices: 36287449--36287518 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
36287439 ATAGTGAGTC
36287449 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
36287476 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
36287504 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36287519 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:36295427 original size:28 final size:27
Alignment explanation
Indices: 36295364--36295433 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
36295354 ATAGTGAGTC
36295364 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
36295391 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
36295419 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36295434 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:36297896 original size:40 final size:39
Alignment explanation
Indices: 36297826--36298032 Score: 164
Period size: 40 Copynumber: 5.2 Consensus size: 39
36297816 CGGAATACAA
* * * *
36297826 CCGGATATAACCACATGCACGAATGTCTTCGGGTCTTAGC
1 CCGGATAGAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
* *
36297866 CCAGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATAGAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
** * *
36297906 CCGGATTTAACAACTTGCACGAATGCCTTAGGGTCTTAGC
1 CCGGATAGAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
36297946 CCGGATTTAG-TCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGA--TAGAACACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
36297986 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATAGAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
36298026 CCGGATA
1 CCGGATA
36298033 TCATTTAATT
Statistics
Matches: 132, Mismatches: 30, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
38 1 0.01
39 2 0.02
40 127 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATAGAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36297973 original size:80 final size:81
Alignment explanation
Indices: 36297826--36298031 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 81
36297816 CGGAATACAA
* * * * *
36297826 CCGGATATAACCACATGCACGAATGTCTTCGGGTCTTAGCCCAGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGTCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
36297890 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * * * *
36297906 CCGGATTTAACAACTTGCACGAATGCCTTAGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGTCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
36297969 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** *
36297986 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGTCTTCGGGTCTTAGCCCGGAT
36298032 ATCATTTAAT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
79 1 0.01
80 100 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGTCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:36305862 original size:40 final size:39
Alignment explanation
Indices: 36305793--36305997 Score: 173
Period size: 40 Copynumber: 5.2 Consensus size: 39
36305783 CGGAATACAA
* * *
36305793 CCGGATA-AACCACATGCACGAATGTCTTCGGGTCTTAGC
1 CCGGATAGAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
*
36305832 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATAGAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
** *
36305872 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
36305912 CCGGATTTAG-TCACTAGC-TAATTGCCTTCGGGTCTTAAC
1 CCGGA--TAGAACACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
36305951 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATAGAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
36305991 CCGGATA
1 CCGGATA
36305998 TCATTTAATT
Statistics
Matches: 134, Mismatches: 25, Indels: 13
0.78 0.15 0.08
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 36 0.27
40 94 0.70
41 1 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATAGAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36305947 original size:39 final size:39
Alignment explanation
Indices: 36305813--36305996 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 39
36305803 CACATGCACG
* ** * * *
36305813 AATGTCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACA
1 AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGC-TA
* *
36305853 AATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGC-A
1 AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCTA
*
36305891 CGAATGCCTTCGGGTCTTAGCCCGGATTTAGTC-ACTAGCTA
1 --AATGCCTTCGGGTCTTAGCCCGGATTTA-ACAACTAGCTA
* * *
36305932 ATTGCCTTCGGGTCTTAACCCGGATTTAACTACTAGCATA
1 AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGC-TA
* *
36305972 AATGTCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGTCTTAGCCCGGAT
36305997 ATCATTTAAT
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 87 0.71
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (39 bp):
AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCTA
Found at i:36305981 original size:79 final size:81
Alignment explanation
Indices: 36305808--36305996 Score: 224
Period size: 79 Copynumber: 2.4 Consensus size: 81
36305798 TAAACCACAT
* * *
36305808 GCACGAATGTCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 GCACAAATGTCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAAC
*
36305872 CCGGATTTAACAACTT
66 CCGGATTTAACAACTA
* * * * * *
36305888 GCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGC-TAATTGCCTTCGGGTCTTAA
1 GCACAAATGTCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAATGCCTTCGGGTATTAA
*
36305950 CCCGGATTTAACTACTA
65 CCCGGATTTAACAACTA
* *
36305967 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGTCTTCGGGTCTTAGCCCGGAT
36305997 ATCATTTAAT
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 56 0.60
80 33 0.35
81 1 0.01
82 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (81 bp):
GCACAAATGTCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCTTCGGGTATTAAC
CCGGATTTAACAACTA
Found at i:36313444 original size:12 final size:12
Alignment explanation
Indices: 36313427--36313453 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
36313417 TCCATGTCTA
36313427 TATTCTCAAATT
1 TATTCTCAAATT
36313439 TATTCTCAAATT
1 TATTCTCAAATT
36313451 TAT
1 TAT
36313454 CTACACTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTCTCAAATT
Found at i:36314995 original size:43 final size:44
Alignment explanation
Indices: 36314883--36314996 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 44
36314873 CAATGCCAAG
** *
36314883 GTCCCAGATGTGGTCTTACATGT-AATCAAATATTGATGCCACT
1 GTCCCAGACATGGTCTTACAAGTAAATCAAATATTGATGCCACT
* * * *
36314926 GTCCCGGACAGGGTCTTACACG-AAATCAAATA-TGATGTCGA-T
1 GTCCCAGACATGGTCTTACAAGTAAATCAAATATTGATG-CCACT
*
36314968 GTCCTAGACATGGTCTTACAAGTAAATCA
1 GTCCCAGACATGGTCTTACAAGTAAATCA
36314997 TAAGTCGATG
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACAAGTAAATCAAATATTGATGCCACT
Found at i:36323384 original size:16 final size:18
Alignment explanation
Indices: 36323363--36323395 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
36323353 CATACAAGCT
36323363 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
36323379 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
36323396 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:36323992 original size:43 final size:44
Alignment explanation
Indices: 36323923--36324141 Score: 257
Period size: 45 Copynumber: 5.0 Consensus size: 44
36323913 CCGAATTCAT
* * *
36323923 TCACCGGCATT-TCGCTTGCTAGGCTCGAAGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGAATAGT-ATC
* *
36323965 TCACTGGCATTATAGCCTGCTAGGCTCGAAAGCTCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCG-AAGCCCGAATAGTATC
* * *
36324010 TCACTGGCATT-TCGCCTGCTAGGCTCGAAGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGAATAGTATC
* * *
36324053 TCACCGGCATTATAGCTTGCTAGGCTCAAAGGACCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAA-GCCCGAATAGTATC
**
36324098 TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAGTAT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAA-GCCCGAATAGTAT
36324142 TGTGTGATAT
Statistics
Matches: 154, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
42 10 0.06
43 38 0.25
44 36 0.23
45 69 0.45
46 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGAATAGTATC
Found at i:36324091 original size:88 final size:88
Alignment explanation
Indices: 36323923--36324141 Score: 284
Period size: 88 Copynumber: 2.5 Consensus size: 88
36323913 CCGAATTCAT
* * *
36323923 TCACCGGCATTTCGCTTGCTAGGCTCGAAGCCCG-ATA-TCATTTCACTGGCATTATAGCCTGCT
1 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCGAATAGT-ATCTCACCGGCATTATAGCCTGCT
36323986 AGGCTCGAAAGCTCGAATAGTATC
65 AGGCTCGAAAGCTCGAATAGTATC
* * *
36324010 TCACTGGCATTTCGCCTGCTAGGCTCGAAGCCTGAATAGTATCTCACCGGCATTATAGCTTGCTA
1 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCGAATAGTATCTCACCGGCATTATAGCCTGCTA
36324075 GGCTC-AAAGGAC-CGAATAGTATC
66 GGCTCGAAA-G-CTCGAATAGTATC
* **
36324098 TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAGTAT
1 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCGAATAGTAT
36324142 TGTGTGATAT
Statistics
Matches: 115, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
87 34 0.30
88 52 0.45
89 17 0.15
90 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (88 bp):
TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCGAATAGTATCTCACCGGCATTATAGCCTGCTA
GGCTCGAAAGCTCGAATAGTATC
Found at i:36325053 original size:46 final size:46
Alignment explanation
Indices: 36324949--36325089 Score: 246
Period size: 46 Copynumber: 3.0 Consensus size: 46
36324939 AAAATTTTCT
*
36324949 TTAACTAAGTAACTTATCCAGAAATATTAAGAGCAACTTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAA-TTTAACAAGC
*
36324996 TTAACTAAGTAACTTATCTGGAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
*
36325042 TTAACTAAGTAACTTATCCGAAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
36325088 TT
1 TT
36325090 TAAATTCAAA
Statistics
Matches: 90, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 56 0.62
47 34 0.38
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
Found at i:36327446 original size:55 final size:55
Alignment explanation
Indices: 36327336--36327451 Score: 124
Period size: 55 Copynumber: 2.1 Consensus size: 55
36327326 GTGGGCAACA
* * * * *
36327336 TGACTTTTAGACACGGCCATGGCACACGCCCGTATGGCCTGCCCGTGTTCAATAC
1 TGACTTTGAGACACAGCCATGGCACACGCCCGTATGACCTACCCGTGTCCAATAC
* * * * * *
36327391 TGACTTTGGGACACAGCTATGGCACATGCCCGTGTGACCTACCTGTGTCCTATAC
1 TGACTTTGAGACACAGCCATGGCACACGCCCGTATGACCTACCCGTGTCCAATAC
*
36327446 TAACTT
1 TGACTT
36327452 AAAATTTTAA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (55 bp):
TGACTTTGAGACACAGCCATGGCACACGCCCGTATGACCTACCCGTGTCCAATAC
Found at i:36338052 original size:40 final size:40
Alignment explanation
Indices: 36338000--36338145 Score: 186
Period size: 40 Copynumber: 3.6 Consensus size: 40
36337990 ATAACCATAA
* * * * *
36338000 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAAATC
36338040 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAAATC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAAATC
* *
36338080 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAAATC
** *
36338120 GCGTAAATGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCC
36338146 CGGTATCATT
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 94 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAAATC
Found at i:36345878 original size:40 final size:40
Alignment explanation
Indices: 36345810--36345973 Score: 211
Period size: 40 Copynumber: 4.1 Consensus size: 40
36345800 CGGAATTTAA
* ** * *
36345810 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
36345850 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
*
36345890 CCGGATATAACAAATCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * ** *
36345930 CCGGATATAACCACTAGCGTAAATGCCTTCGGGACTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
36345970 CCGG
1 CCGG
36345974 GTATCATTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:36353699 original size:40 final size:40
Alignment explanation
Indices: 36353638--36353801 Score: 172
Period size: 40 Copynumber: 4.1 Consensus size: 40
36353628 CGGAATTTAA
* * *
36353638 CCGGATATAACCACAA--GCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAA-CA-AATCGCACAAATGCCTTCGGGTCTTAGC
* * *
36353678 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAATCGCACAAATGCCTTCGGGTCTTAGC
*
36353718 CCGGATATAACAAATCGTACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAATCGCACAAATGCCTTCGGGTCTTAGC
* * ** *
36353758 CCGGATATAATC-ACTAGCGTAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAAATCGCACAAATGCCTTCGGGTCTTAGC
36353798 CCGG
1 CCGG
36353802 GTATCATTCA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 2 0.02
40 101 0.96
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAAATCGCACAAATGCCTTCGGGTCTTAGC
Found at i:36363799 original size:55 final size:55
Alignment explanation
Indices: 36363699--36363804 Score: 122
Period size: 55 Copynumber: 1.9 Consensus size: 55
36363689 TAACTTTTAA
* * * * *
36363699 ACACGGCCATGGGACACGTCCGTATGGCCTGCCCGTGTTCAATACTGACTTTGGG
1 ACACGGCCATGGGACACGCCCGTATGACCTACCCGTGTCCAATACTAACTTTGGG
* * * * *
36363754 ACACGGCTATGGGACATGCCCGTGTGACCTACCTGTGTCCTATACTAACTT
1 ACACGGCCATGGGACACGCCCGTATGACCTACCCGTGTCCAATACTAACTT
36363805 AAAATTTTAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 41 1.00
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.25
Consensus pattern (55 bp):
ACACGGCCATGGGACACGCCCGTATGACCTACCCGTGTCCAATACTAACTTTGGG
Found at i:36366628 original size:37 final size:37
Alignment explanation
Indices: 36366569--36366640 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
36366559 AGCTCAGACG
*
36366569 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
36366606 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
36366641 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:36366912 original size:48 final size:49
Alignment explanation
Indices: 36366786--36366924 Score: 201
Period size: 52 Copynumber: 2.8 Consensus size: 49
36366776 GCACATCGCC
*
36366786 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
* *
36366838 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
36366886 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
36366925 TGCATGTTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
48 36 0.45
49 1 0.01
51 1 0.01
52 42 0.52
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:36366973 original size:47 final size:47
Alignment explanation
Indices: 36366894--36367087 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
36366884 CATACATATT
* * * *
36366894 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
36366941 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
36366988 TAACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
36367035 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36367082 TCACAT
1 TCACAT
36367088 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36371264 original size:40 final size:40
Alignment explanation
Indices: 36371220--36371340 Score: 188
Period size: 40 Copynumber: 3.0 Consensus size: 40
36371210 CCAGCATGAT
* * *
36371220 TGCTCTTCGGGACCTAGCCCGGATATAACACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
36371260 TGCTCTTCGGAACTTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
36371300 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
36371340 T
1 T
36371341 TCACAATGAA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:36371572 original size:40 final size:40
Alignment explanation
Indices: 36371528--36371773 Score: 465
Period size: 40 Copynumber: 6.2 Consensus size: 40
36371518 TGTTCATTTG
36371528 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
36371568 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
36371608 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
36371648 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
36371688 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
36371728 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
36371768 ATCACT
1 ATCACT
36371774 CTCAATTCTT
Statistics
Matches: 200, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 200 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:36373102 original size:37 final size:37
Alignment explanation
Indices: 36373043--36373151 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
36373033 AGCTCAGACG
* *
36373043 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
36373080 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36373117 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36373152 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36373423 original size:48 final size:49
Alignment explanation
Indices: 36373297--36373435 Score: 201
Period size: 52 Copynumber: 2.8 Consensus size: 49
36373287 GCACATCGCC
*
36373297 TACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
* *
36373349 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
36373397 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
36373436 TGCATGTTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
48 36 0.45
49 1 0.01
51 1 0.01
52 42 0.52
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:36373484 original size:47 final size:47
Alignment explanation
Indices: 36373405--36373645 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
36373395 CATACATATT
* * * *
36373405 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
36373452 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36373499 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36373546 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
36373593 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36373640 TCACAT
1 TCACAT
36373646 AAAATCCTAA
Statistics
Matches: 180, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 180 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36373525 original size:22 final size:22
Alignment explanation
Indices: 36373498--36373616 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
36373488 GCTCACATTC
36373498 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
36373520 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36373544 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
36373567 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36373591 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36373614 ATC
1 ATC
36373617 TCATATATAC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 23 0.32
23 14 0.20
24 14 0.20
25 20 0.28
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36373526 original size:94 final size:94
Alignment explanation
Indices: 36373358--36373645 Score: 375
Period size: 94 Copynumber: 3.1 Consensus size: 94
36373348 ATATATATTT
* * * * *
36373358 CACATTGACCATTCGGCTTTA-C-CACATATGCATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC--ACAT-TCATCACATTGGCCATTC
* * *
36373420 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTATCACATATATGCATGTTCACATTCAC
36373453 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
*
36373518 TTATCACATATATGCATGTTCACATTCAT
66 TTATCACATATATGCATGTTCACATTCAC
* *
36373547 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
* * ** *
36373612 TTATCTCATATATACACATTCACATTCAT
66 TTATCACATATATGCATGTTCACATTCAC
36373641 CACAT
1 CACAT
36373646 AAAATCCTAA
Statistics
Matches: 175, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
93 1 0.01
94 140 0.80
95 19 0.11
96 4 0.02
97 11 0.06
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
TTATCACATATATGCATGTTCACATTCAC
Found at i:36380950 original size:56 final size:56
Alignment explanation
Indices: 36380864--36381028 Score: 242
Period size: 56 Copynumber: 2.9 Consensus size: 56
36380854 ACCATGGCAT
*
36380864 CGATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGACATGTGACTC
1 CGATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGATATGTGACTC
* * * *
36380920 CGATATATGTCTGCGAGTAAGACTATGTTTAATACATTGGCATCAATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGATATGTGACTC
* * *
36380976 CGATATATGTGTGTGAGTAAGACCACGTTTAATATAG-TGGCATCGATATGTGA
1 CGATATATGTGTGCGAGTAAGACTACGTTTAATA-CGTTGGCATCGATATGTGA
36381029 TTACATGTAA
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
56 96 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACTACGTTTAATACGTTGGCATCGATATGTGACTC
Found at i:36382086 original size:17 final size:19
Alignment explanation
Indices: 36382044--36382089 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
36382034 ATGAAATTTT
*
36382044 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
36382063 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
36382081 AA-TATTATT
1 AATTATTATT
36382090 GTATGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:36384881 original size:31 final size:32
Alignment explanation
Indices: 36384830--36384892 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
36384820 CTATGGGCCA
36384830 TACTGTTATCTGAAAAAGGGCTAAGGCCCAGT
1 TACTGTTATCTGAAAAAGGGCTAAGGCCCAGT
**
36384862 TACTG-TATTCTG-AAAAGGGCTTCGGCCCAGT
1 TACTGTTA-TCTGAAAAAGGGCTAAGGCCCAGT
36384893 AGCCGCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 19 0.68
32 9 0.32
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (32 bp):
TACTGTTATCTGAAAAAGGGCTAAGGCCCAGT
Found at i:36389227 original size:10 final size:10
Alignment explanation
Indices: 36389214--36389247 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
36389204 AGCTGAATTC
*
36389214 AGCTCATTTG
1 AGCTCGTTTG
*
36389224 AGCTCGTTTC
1 AGCTCGTTTG
36389234 AGCTCGTTTG
1 AGCTCGTTTG
36389244 AGCT
1 AGCT
36389248 AAATCAAGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.38
Consensus pattern (10 bp):
AGCTCGTTTG
Found at i:36389227 original size:20 final size:20
Alignment explanation
Indices: 36389210--36389247 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36389200 GTCTAGCTGA
36389210 ATTCAGCTCATTTGAGCTCG
1 ATTCAGCTCATTTGAGCTCG
* *
36389230 TTTCAGCTCGTTTGAGCT
1 ATTCAGCTCATTTGAGCT
36389248 AAATCAAGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.24, G:0.21, T:0.39
Consensus pattern (20 bp):
ATTCAGCTCATTTGAGCTCG
Found at i:36389268 original size:21 final size:21
Alignment explanation
Indices: 36389244--36389289 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
36389234 AGCTCGTTTG
*
36389244 AGCTAAATCAAGCTTACTTTT
1 AGCTAAACCAAGCTTACTTTT
* *
36389265 AGCTCAACCGAGCTTACTTTT
1 AGCTAAACCAAGCTTACTTTT
36389286 AGCT
1 AGCT
36389290 CGTTCTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (21 bp):
AGCTAAACCAAGCTTACTTTT
Found at i:36391406 original size:12 final size:12
Alignment explanation
Indices: 36391389--36391422 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
36391379 CTCGAGAAAA
36391389 GATTCCTATTAT
1 GATTCCTATTAT
36391401 GATTCCTATTAT
1 GATTCCTATTAT
36391413 GATTCCTATT
1 GATTCCTATT
36391423 CCCCAACAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.50
Consensus pattern (12 bp):
GATTCCTATTAT
Found at i:36391894 original size:12 final size:12
Alignment explanation
Indices: 36391876--36391912 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
36391866 AAACAAAATA
36391876 AGATTGAAAAAG
1 AGATTGAAAAAG
*
36391888 AGCTTGAAAAAG
1 AGATTGAAAAAG
*
36391900 AGAATGAAAAAG
1 AGATTGAAAAAG
36391912 A
1 A
36391913 AAAAGAGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.59, C:0.03, G:0.24, T:0.14
Consensus pattern (12 bp):
AGATTGAAAAAG
Found at i:36395203 original size:46 final size:47
Alignment explanation
Indices: 36395072--36395339 Score: 218
Period size: 46 Copynumber: 5.7 Consensus size: 47
36395062 TATGAGAGCC
*
36395072 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACG-AGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGACGTA--GCT
* * *
36395120 AGTGTAAGA-CATGTCTTGGACAT-GCATTAGCCT-CGAGACGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCGGCTACGAGACGT-AGCT
* * *
36395166 AGTATAAGA-CATGTTTGGGACAT-GCATCGGCTACGAGATGT-G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGACGTAGCT
*
36395209 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACG-GTTATCTGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAG--A-C-G-TAGCT
* * * *
36395260 AGTGTAAGACCATGTCCGGGACATGGCATCAGCCT-CGAAGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTACG-AGACG-TAGCT
36395309 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
36395340 ACACTTTACC
Statistics
Matches: 181, Mismatches: 20, Indels: 38
0.76 0.08 0.16
Matches are distributed among these distances:
43 1 0.01
44 10 0.06
45 20 0.11
46 51 0.28
47 16 0.09
48 12 0.07
49 34 0.19
50 30 0.17
51 6 0.03
53 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGACGTAGCT
Found at i:36397105 original size:10 final size:10
Alignment explanation
Indices: 36397090--36397146 Score: 60
Period size: 10 Copynumber: 5.7 Consensus size: 10
36397080 CAAGCCCATC
*
36397090 CAGCTCAATT
1 CAGCTCATTT
*
36397100 CAGCTCGTTT
1 CAGCTCATTT
*
36397110 CAACTCATTT
1 CAGCTCATTT
*
36397120 CAGCTCGTTT
1 CAGCTCATTT
*
36397130 CAGCTCGTTT
1 CAGCTCATTT
*
36397140 TAGCTCA
1 CAGCTCA
36397147 ACCGAGCTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 39 1.00
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.37
Consensus pattern (10 bp):
CAGCTCATTT
Found at i:36397121 original size:20 final size:20
Alignment explanation
Indices: 36397093--36397145 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
36397083 GCCCATCCAG
*
36397093 CTCAATTCAGCTCGTTTCAA
1 CTCATTTCAGCTCGTTTCAA
*
36397113 CTCATTTCAGCTCGTTTCAG
1 CTCATTTCAGCTCGTTTCAA
* *
36397133 CTCGTTTTAGCTC
1 CTCATTTCAGCTC
36397146 AACCGAGCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.17, C:0.30, G:0.13, T:0.40
Consensus pattern (20 bp):
CTCATTTCAGCTCGTTTCAA
Found at i:36398780 original size:42 final size:42
Alignment explanation
Indices: 36398734--36398820 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
36398724 CATTGCACTC
*
36398734 CTTTGTTAGTGCTACAATCTCGAACTCACTAAGCATTTTCTT
1 CTTTGTTAGTGCTACAATCTCAAACTCACTAAGCATTTTCTT
36398776 CTTTGTTAGTGCTACAATCTCAAACTCACTAAGCATTTTCTT
1 CTTTGTTAGTGCTACAATCTCAAACTCACTAAGCATTTTCTT
36398818 CTT
1 CTT
36398821 AGACAGAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (42 bp):
CTTTGTTAGTGCTACAATCTCAAACTCACTAAGCATTTTCTT
Found at i:36410234 original size:50 final size:50
Alignment explanation
Indices: 36410154--36410536 Score: 319
Period size: 50 Copynumber: 7.9 Consensus size: 50
36410144 TGATGCTAGG
* * * *
36410154 GAGATATGAAAGCTAGTGTAAAATCGTGTCTGGGACATGGCATCGGCCTT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
*
36410204 GAGATATGAGAGCTAGTGTAATACCATGTCTGGGACATGGCATCGG-CTT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * *
36410253 --GATAT--GTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTT
* * * *
36410299 GATAGATGAGAGCTAATGTAAGACCATGTCTGAGACATGGCATCGG-CTT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * ** **
36410348 --GATATGTG-TC-AGTGTAAGACCATGTCTGGGGCATAACATC-GCCACC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TT
* * * * * *
36410394 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* **
36410444 GATATATGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTT
1 GAGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * * * *
36410493 -TGATGTGTGAGCCAGTGAAAGACCATGTCCGGGACATGGCATCG
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
36410537 ACACCTTACC
Statistics
Matches: 266, Mismatches: 50, Indels: 35
0.76 0.14 0.10
Matches are distributed among these distances:
44 1 0.00
45 59 0.22
46 1 0.00
47 11 0.04
48 44 0.17
49 5 0.02
50 143 0.54
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
Found at i:36410336 original size:95 final size:95
Alignment explanation
Indices: 36410180--36410536 Score: 414
Period size: 95 Copynumber: 3.7 Consensus size: 95
36410170 TGTAAAATCG
* * * *
36410180 TGTCTGGGACATGGCATCGGC-CTTGAGATATGAGAGCTAGTGTAATACCATGTCTGGGACATGG
1 TGTCTGGGACATGGCATCGGCAC-CGATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
*
36410244 CATCGGCTTGATATGTGCCAGTGTAAGACCA
65 CATCGGCTTGATATGTGTCAGTGTAAGACCA
* * *
36410275 TGTCTAGGACATGGCATCGGCACCGATAGATGAGAGCTAATGTAAGACCATGTCTGAGACATGGC
1 TGTCTGGGACATGGCATCGGCACCGATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
36410340 ATCGGCTTGATATGTGTCAGTGTAAGACCA
66 ATCGGCTTGATATGTGTCAGTGTAAGACCA
* ** * *
36410370 TGTCTGGGGCATAACATCGCCACCGATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 TGTCTGGGACATGGCATCGGCACCGATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
* * *
36410435 ATCAGCATCGATATATGAGAGTCAGTGTAAGACCA
66 ATCGGC-TTG--ATAT--GTGTCAGTGTAAGACCA
** *** * * * *
36410470 TGTCTGGGACATGGCATCAACTTTGAT-G-TGTGAGCCAGTGAAAGACCATGTCCGGGACATGGC
1 TGTCTGGGACATGGCATCGGCACCGATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
36410533 ATCG
66 ATCG
36410537 ACACCTTACC
Statistics
Matches: 225, Mismatches: 31, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
95 147 0.65
96 3 0.01
98 39 0.17
99 1 0.00
100 35 0.16
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (95 bp):
TGTCTGGGACATGGCATCGGCACCGATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
ATCGGCTTGATATGTGTCAGTGTAAGACCA
Found at i:36410668 original size:16 final size:16
Alignment explanation
Indices: 36410647--36410684 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
36410637 CATAAAATTT
36410647 CATTCATATTTTAAAA
1 CATTCATATTTTAAAA
36410663 CATTCATATTTTAAAA
1 CATTCATATTTTAAAA
36410679 CATTCA
1 CATTCA
36410685 ATCACATGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (16 bp):
CATTCATATTTTAAAA
Found at i:36412273 original size:15 final size:16
Alignment explanation
Indices: 36412255--36412284 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36412245 AATTGTTTTA
36412255 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
36412270 TTACATAATTTCACT
1 TTACATAATTTCACT
36412285 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:36415309 original size:8 final size:8
Alignment explanation
Indices: 36415296--36415332 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
36415286 TTATGTTTAG
36415296 TATATTAT
1 TATATTAT
36415304 TATATTAT
1 TATATTAT
36415312 TATATTAT
1 TATATTAT
36415320 TATATTAT
1 TATATTAT
36415328 TATAT
1 TATAT
36415333 AATATAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:36415311 original size:5 final size:5
Alignment explanation
Indices: 36415301--36415386 Score: 68
Period size: 5 Copynumber: 16.6 Consensus size: 5
36415291 TTTAGTATAT
* * *
36415301 TATTA TATTA T-TATA TTATTA TATTA T-TATA TAATA TAAATA TTTTA
1 TATTA TATTA TAT-TA -TATTA TATTA TAT-TA TATTA T-ATTA TATTA
* *
36415348 TGTTT TAATTA TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA T-ATTA TATTA TATTA TATTA TATTA TATTA TAT
36415387 AAACTAAAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
4 2 0.03
5 53 0.79
6 11 0.16
7 1 0.01
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:36416682 original size:15 final size:15
Alignment explanation
Indices: 36416662--36416718 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
36416652 GCGATGAATT
*
36416662 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
36416677 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
36416692 ATTGAAATTATATTG
1 ATTGAAATTATATTG
36416707 ATTG-AATTATAT
1 ATTGAAATTATAT
36416719 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:36420969 original size:25 final size:25
Alignment explanation
Indices: 36420937--36420985 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
36420927 CTATAACATG
* * *
36420937 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
36420962 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
36420986 TTATGTATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36421086 original size:20 final size:20
Alignment explanation
Indices: 36421020--36421086 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
36421010 ATTTTGATAA
*
36421020 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
36421040 ACGTGACATGTATGATATGC
1 ACATGATATGTATGATATGC
36421060 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36421080 ACATGAT
1 ACATGAT
36421087 GTAATCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36421203 original size:46 final size:47
Alignment explanation
Indices: 36421136--36421231 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 47
36421126 AGGAAGTGAA
*
36421136 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
36421182 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
36421229 AAA
1 AAA
36421232 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 23 0.49
47 24 0.51
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:36421214 original size:24 final size:24
Alignment explanation
Indices: 36421135--36421238 Score: 167
Period size: 23 Copynumber: 4.4 Consensus size: 24
36421125 GAGGAAGTGA
36421135 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36421159 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36421182 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36421205 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36421229 AAAAGAGGCT
1 AAAAG-GGCT
36421239 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 44 0.59
24 27 0.36
25 4 0.05
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36421480 original size:31 final size:31
Alignment explanation
Indices: 36421445--36421505 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
36421435 TGTTTACAGT
36421445 AAAGGCTTCGGCCCAGTAATATGAAATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
36421476 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
36421506 AAATAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:36421999 original size:16 final size:16
Alignment explanation
Indices: 36421978--36422010 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
36421968 ATAACAAAGT
36421978 GTGGCTATGGTTGTGG
1 GTGGCTATGGTTGTGG
36421994 GTGGCTATGGTTGTGG
1 GTGGCTATGGTTGTGG
36422010 G
1 G
36422011 CATGTCTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.06, G:0.52, T:0.36
Consensus pattern (16 bp):
GTGGCTATGGTTGTGG
Found at i:36425185 original size:43 final size:42
Alignment explanation
Indices: 36425096--36425250 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 42
36425086 CGAGGCTATG
*
36425096 TGTAAGACCATATTTGGGATATGGCATC-ATTATGAGACTTCT-
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATGAGA-TTCTA
*
36425138 TGTAAGACCATACTCTGGGATATGGCATCGATATGAGATTTTA
1 TGTAAGACCATA-TCTGGGATATGGCATCGATATGAGATTCTA
*** * * * * * *
36425181 TGTAAGGTTATAGT-TAGGCTATTAGCATCGACATGAGATCCCA
1 TGTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGATTCTA
36425224 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
36425251 TGGTGTAATA
Statistics
Matches: 89, Mismatches: 19, Indels: 10
0.75 0.16 0.08
Matches are distributed among these distances:
42 26 0.29
43 62 0.70
44 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTCTA
Found at i:36428754 original size:62 final size:62
Alignment explanation
Indices: 36428657--36428781 Score: 205
Period size: 62 Copynumber: 2.0 Consensus size: 62
36428647 TTACATACAG
* * *
36428657 TAGGGTTGCTGCCTCTCATAAATATTATGAAGGGTTTTGGGTCTCTCTTGTATCAAGTTCAA
1 TAGGGTTGCTGCCTCTCATAAATATTATGAAGGGTTTTGGGGCTCTCCTGTATCAAGTCCAA
* *
36428719 TAGGGTTGCTGCCTCTCTTAAATATTATGAAGGGTTTTGGGGCTCTCCTGTATTAAGTCCAA
1 TAGGGTTGCTGCCTCTCATAAATATTATGAAGGGTTTTGGGGCTCTCCTGTATCAAGTCCAA
36428781 T
1 T
36428782 TATAAGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (62 bp):
TAGGGTTGCTGCCTCTCATAAATATTATGAAGGGTTTTGGGGCTCTCCTGTATCAAGTCCAA
Found at i:36437905 original size:2 final size:2
Alignment explanation
Indices: 36437898--36437934 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
36437888 AACTAGGATT
*
36437898 TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
36437935 AATTTTGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:36440329 original size:22 final size:21
Alignment explanation
Indices: 36440302--36440343 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
36440292 CCTTTCATTT
36440302 TTTTAT-TTTCTTCTCTTGTTTA
1 TTTTATATTTC-TCT-TTGTTTA
36440324 TTTTATATTTCTCTTTGTTT
1 TTTTATATTTCTCTTTGTTT
36440344 TGTTATACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 9 0.47
23 4 0.21
ACGTcount: A:0.10, C:0.12, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTTATATTTCTCTTTGTTTA
Found at i:36440349 original size:20 final size:20
Alignment explanation
Indices: 36440312--36440350 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
36440302 TTTTATTTTC
*
36440312 TTCTCTTGTTTATTTTATAT
1 TTCTCTTGTTTATGTTATAT
36440332 TTCTCTTTGTTT-TGTTATA
1 TTCTC-TTGTTTATGTTATA
36440351 CGTTATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.13, C:0.10, G:0.08, T:0.69
Consensus pattern (20 bp):
TTCTCTTGTTTATGTTATAT
Found at i:36441846 original size:20 final size:21
Alignment explanation
Indices: 36441803--36441850 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
36441793 TGAATTTATT
*
36441803 TTTTGTTATGTTTAACATATA
1 TTTTATTATGTTTAACATATA
36441824 TTTTATTATGTTTAACA-ATA
1 TTTTATTATGTTTAACATATA
36441844 TTTTATT
1 TTTTATT
36441851 TATACTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.60
Consensus pattern (21 bp):
TTTTATTATGTTTAACATATA
Found at i:36441853 original size:21 final size:22
Alignment explanation
Indices: 36441799--36441853 Score: 78
Period size: 21 Copynumber: 2.5 Consensus size: 22
36441789 AACATGAATT
*
36441799 TATTTTTTGTTATGTTTAACATA
1 TATTTTAT-TTATGTTTAACATA
36441822 TATTTTA-TTATGTTTAACA-A
1 TATTTTATTTATGTTTAACATA
36441842 TATTTTATTTAT
1 TATTTTATTTAT
36441854 ACTTATTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 8 0.27
21 16 0.53
23 6 0.20
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (22 bp):
TATTTTATTTATGTTTAACATA
Found at i:36445831 original size:44 final size:44
Alignment explanation
Indices: 36445767--36445889 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
36445757 GAAATCTGAA
* * *
36445767 CTCATTGAGTTGGTCTGAGTTCGTGCTAT-TATGAG-GCATCCGAG
1 CTCATTGAGTTGGTCCGAGTTCAT--TATGGATGAGAGCATCCGAG
* *
36445811 CTCATTGAGTTGGTCCGAGTTCATTATGGATGCGAGCATCGGAG
1 CTCATTGAGTTGGTCCGAGTTCATTATGGATGAGAGCATCCGAG
* * *
36445855 CTCGTTGAGTTGGTCCTAGTTCACTATGGATGAGA
1 CTCATTGAGTTGGTCCGAGTTCATTATGGATGAGA
36445890 TACATGTAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 3 0.04
43 4 0.06
44 61 0.90
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.33
Consensus pattern (44 bp):
CTCATTGAGTTGGTCCGAGTTCATTATGGATGAGAGCATCCGAG
Found at i:36448643 original size:32 final size:33
Alignment explanation
Indices: 36448564--36448630 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
36448554 TGATAAATGG
*
36448564 ATGCCTATATAACTCCCGAAACCCCCCAATTTC
1 ATGCCTATATAACTCCCGAAAACCCCCAATTTC
36448597 ATGCCTATATAACTCCC-AAAACCCCCAATTTC
1 ATGCCTATATAACTCCCGAAAACCCCCAATTTC
36448629 AT
1 AT
36448631 TCTTTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 16 0.48
33 17 0.52
ACGTcount: A:0.33, C:0.37, G:0.04, T:0.25
Consensus pattern (33 bp):
ATGCCTATATAACTCCCGAAAACCCCCAATTTC
Found at i:36448854 original size:2 final size:2
Alignment explanation
Indices: 36448847--36448873 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
36448837 ATAAATTGTA
36448847 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
36448874 AAGAAAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36449576 original size:27 final size:27
Alignment explanation
Indices: 36449521--36449576 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
36449511 TTTAAAAAAA
*
36449521 GTTATATAAAAAATTTAATATGGATAG
1 GTTATATAAAAAATTTAATATGGACAG
* *
36449548 GTTATATAAAAATTTTAATATGGGCAG
1 GTTATATAAAAAATTTAATATGGACAG
36449575 GT
1 GT
36449577 CAAGCCCGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.02, G:0.18, T:0.38
Consensus pattern (27 bp):
GTTATATAAAAAATTTAATATGGACAG
Found at i:36450199 original size:2 final size:2
Alignment explanation
Indices: 36450178--36450231 Score: 83
Period size: 2 Copynumber: 27.5 Consensus size: 2
36450168 AAAAAATTTA
* *
36450178 AT AT A- AT AA AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36450219 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
36450232 AAAAAGCTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:36456652 original size:3 final size:3
Alignment explanation
Indices: 36456644--36456683 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
36456634 TATGTTACTT
*
36456644 TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
36456684 AGAGGAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:36463693 original size:14 final size:14
Alignment explanation
Indices: 36463676--36463703 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36463666 AGTATTTTTG
36463676 ATTAACTAGTTGAA
1 ATTAACTAGTTGAA
36463690 ATTAACTAGTTGAA
1 ATTAACTAGTTGAA
36463704 CTATGCATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
ATTAACTAGTTGAA
Found at i:36466416 original size:40 final size:40
Alignment explanation
Indices: 36466237--36466419 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
36466227 GCTACTCGTT
* * *
36466237 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
* * * *
36466277 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
* * *
36466317 TAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATATAGTAACTCGCA
* * * *
36466357 CGAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATATAGTAAC-TCGCA
36466398 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
36466420 GGACATCATT
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 112 0.90
41 10 0.08
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGCA
Found at i:36469815 original size:37 final size:37
Alignment explanation
Indices: 36469762--36469836 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
36469752 GAGACTCAAA
36469762 TGATTTAAAATAAAGTTTTGACTTTTCGCCTATTAAT
1 TGATTTAAAATAAAGTTTTGACTTTTCGCCTATTAAT
* * *
36469799 TGATTTATAATTAAGTTTTGACTTTTTGCCTATTAAT
1 TGATTTAAAATAAAGTTTTGACTTTTCGCCTATTAAT
36469836 T
1 T
36469837 ATAAACTTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.51
Consensus pattern (37 bp):
TGATTTAAAATAAAGTTTTGACTTTTCGCCTATTAAT
Found at i:36471713 original size:33 final size:33
Alignment explanation
Indices: 36471659--36471736 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
36471649 GACTTACCTC
* *
36471659 GTGTTTATTGTCCCAGAGGACTGTCTCTGTTTT
1 GTGTTTATTGTCCCAGAGGACTATCTCTATTTT
* * *
36471692 GTGTTTATTGTGCCA-ATGGACTATTTTTATTTT
1 GTGTTTATTGTCCCAGA-GGACTATCTCTATTTT
*
36471725 GTGTTTACTGTC
1 GTGTTTATTGTC
36471737 TCGGTAGACC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
32 1 0.03
33 36 0.97
ACGTcount: A:0.14, C:0.14, G:0.22, T:0.50
Consensus pattern (33 bp):
GTGTTTATTGTCCCAGAGGACTATCTCTATTTT
Found at i:36471772 original size:34 final size:35
Alignment explanation
Indices: 36471713--36471778 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
36471703 GCCAATGGAC
* *
36471713 TATTTTTATTTTGTGTTTACTGTCTCGGTAGACCA
1 TATTTCTATTTCGTGTTTACTGTCTCGGTAGACCA
36471748 TATTTCTATTTCGTG-TTACTGTCTCGGTAGA
1 TATTTCTATTTCGTGTTTACTGTCTCGGTAGA
36471779 TCATCTCTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.17, C:0.15, G:0.18, T:0.50
Consensus pattern (35 bp):
TATTTCTATTTCGTGTTTACTGTCTCGGTAGACCA
Found at i:36471790 original size:34 final size:35
Alignment explanation
Indices: 36471719--36471790 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 35
36471709 GGACTATTTT
* *
36471719 TATTTTGTGTTTACTGTCTCGGTAGACCATATTTC
1 TATTTCGTGTTTACTGTCTCGGTAGACCATATCTC
* *
36471754 TATTTCGTG-TTACTGTCTCGGTAGATCATCTCTC
1 TATTTCGTGTTTACTGTCTCGGTAGACCATATCTC
36471788 TAT
1 TAT
36471791 GGATGCCATG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
34 25 0.76
35 8 0.24
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (35 bp):
TATTTCGTGTTTACTGTCTCGGTAGACCATATCTC
Found at i:36473909 original size:13 final size:13
Alignment explanation
Indices: 36473891--36473915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36473881 AAGTAATCGC
36473891 ACACGGGCGTGTT
1 ACACGGGCGTGTT
36473904 ACACGGGCGTGT
1 ACACGGGCGTGT
36473916 CCCTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Done.